AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003920.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003920.01.T01 MTR_1g071040 100.000 134 0 0 1 134 1 134 1.12e-93 266
MsG0180003920.01.T01 MTR_1g114050 91.473 129 11 0 6 134 3 131 5.94e-82 236
MsG0180003920.01.T01 MTR_1g011750 86.567 134 18 0 1 134 1 134 1.05e-79 231
MsG0180003920.01.T01 MTR_1g011850 86.567 134 18 0 1 134 1 134 1.05e-79 231
MsG0180003920.01.T01 MTR_4g048490 67.910 134 14 1 1 134 1 105 1.94e-47 149
MsG0180003920.01.T01 MTR_7g027610 67.213 122 14 2 13 134 3 98 6.10e-44 140
MsG0180003920.01.T01 MTR_2g082510 64.545 110 37 2 24 132 14 122 1.06e-39 130
MsG0180003920.01.T01 MTR_2g082220 64.545 110 37 2 24 132 14 122 1.27e-39 129
MsG0180003920.01.T01 MTR_7g108320 59.016 122 47 3 11 130 6 126 2.82e-39 129
MsG0180003920.01.T01 MTR_7g114060 59.664 119 45 3 14 130 6 123 1.49e-38 127
MsG0180003920.01.T01 MTR_7g114040 59.664 119 45 3 14 130 6 123 1.49e-38 127
MsG0180003920.01.T01 MTR_7g093910 55.118 127 50 3 10 130 1 126 5.48e-38 126
MsG0180003920.01.T01 MTR_2g096610 60.550 109 41 2 23 130 19 126 3.62e-36 121
MsG0180003920.01.T01 MTR_0653s0030 61.111 108 17 1 5 112 15 97 4.78e-36 121
MsG0180003920.01.T01 MTR_7g113160 55.752 113 48 2 19 130 19 130 6.19e-36 120
MsG0180003920.01.T01 MTR_4g063280 60.550 109 41 2 23 130 15 122 1.90e-35 119
MsG0180003920.01.T01 MTR_4g071150 62.500 104 37 2 28 130 26 128 8.95e-35 118
MsG0180003920.01.T01 MTR_4g064967 60.952 105 39 2 27 130 25 128 1.35e-34 117
MsG0180003920.01.T01 MTR_2g096570 60.952 105 39 2 27 130 24 127 1.87e-34 117
MsG0180003920.01.T01 MTR_4g064005 61.538 104 38 2 28 130 26 128 1.93e-34 117
MsG0180003920.01.T01 MTR_8g086640 58.716 109 43 2 27 134 25 132 2.65e-34 117
MsG0180003920.01.T01 MTR_4g063410 60.000 105 40 2 27 130 25 128 6.05e-34 115
MsG0180003920.01.T01 MTR_7g114050 49.593 123 48 5 10 130 4 114 6.53e-27 97.4
MsG0180003920.01.T01 MTR_4g063300 62.687 67 24 1 55 120 17 83 1.71e-20 80.9
MsG0180003920.01.T01 MTR_6g005150 45.283 106 47 4 27 130 27 123 3.10e-19 78.2
MsG0180003920.01.T01 MTR_7g427690 78.947 38 8 0 96 133 412 449 3.14e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003920.01.T01 AT3G54560 91.912 136 9 1 1 134 1 136 5.25e-79 229
MsG0180003920.01.T01 AT3G54560 91.912 136 9 1 1 134 1 136 5.25e-79 229
MsG0180003920.01.T01 AT2G38810 89.706 136 12 1 1 134 1 136 8.52e-77 224
MsG0180003920.01.T01 AT2G38810 89.706 136 12 1 1 134 1 136 8.52e-77 224
MsG0180003920.01.T01 AT2G38810 89.706 136 12 1 1 134 1 136 8.52e-77 224
MsG0180003920.01.T01 AT2G38810 89.706 136 12 1 1 134 1 136 8.52e-77 224
MsG0180003920.01.T01 AT1G52740 82.836 134 23 0 1 134 1 134 2.15e-71 210
MsG0180003920.01.T01 AT4G13570 78.022 91 20 0 34 124 28 118 3.30e-47 148
MsG0180003920.01.T01 AT4G13570 78.889 90 19 0 35 124 35 124 6.72e-47 148
MsG0180003920.01.T01 AT3G20670 64.545 110 37 2 24 132 14 122 6.59e-40 130
MsG0180003920.01.T01 AT4G27230 64.545 110 37 2 24 132 14 122 1.08e-39 130
MsG0180003920.01.T01 AT4G27230 64.545 110 37 2 24 132 14 122 1.08e-39 130
MsG0180003920.01.T01 AT5G54640 64.545 110 37 2 24 132 14 122 1.17e-39 130
MsG0180003920.01.T01 AT1G51060 63.889 108 37 2 24 130 14 120 4.31e-39 128
MsG0180003920.01.T01 AT5G02560 60.177 113 43 2 23 134 21 132 1.16e-38 128
MsG0180003920.01.T01 AT1G08880 59.829 117 44 3 14 128 9 124 1.62e-38 127
MsG0180003920.01.T01 AT1G54690 59.829 117 44 3 14 128 9 124 2.02e-38 127
MsG0180003920.01.T01 AT5G27670 60.177 113 43 2 19 130 18 129 9.52e-37 123
MsG0180003920.01.T01 AT5G59870 59.633 109 42 2 23 130 21 128 7.60e-35 118
MsG0180003920.01.T01 AT5G02560 49.635 137 43 3 23 134 21 156 2.98e-33 115

Find 51 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTTGCAGCTTGCTATC+AGG 0.247896 1:+70140472 MsG0180003920.01.T01:CDS
AGCAACAGCTGCAGTGTATT+TGG 0.282329 1:+70140362 MsG0180003920.01.T01:CDS
TTCTTCTCGTGCTGGAATTC+AGG 0.284428 1:+70139348 MsG0180003920.01.T01:CDS
TTCTTATGTGGTCATTTAGA+TGG 0.310155 1:+70140741 MsG0180003920.01.T01:three_prime_UTR
AAAGCAAAGAATTCATTCTT+TGG 0.314617 1:-70140586 None:intergenic
TTGATATGGTAGTGTGTAAA+TGG 0.352891 1:+70140713 MsG0180003920.01.T01:three_prime_UTR
AGTGTATTTGGCATCCATTC+TGG 0.360664 1:+70140374 MsG0180003920.01.T01:CDS
CAGCAATTGTTCCCTTGATA+AGG 0.371937 1:-70140515 None:intergenic
CTTATCAAGGGAACAATTGC+TGG 0.372156 1:+70140516 MsG0180003920.01.T01:CDS
CTCTTTCTCTCTCGATTCCA+AGG 0.394966 1:+70139135 MsG0180003920.01.T01:five_prime_UTR
CTCCGACACGTCCATTAGCT+TGG 0.422586 1:-70140341 None:intergenic
AGCAATTGTTCCCTTGATAA+GGG 0.441041 1:-70140514 None:intergenic
AAGCAAAGAGTCCAAGCTAA+TGG 0.447447 1:+70140330 MsG0180003920.01.T01:CDS
TTAGATATTTGTGATGCTGT+TGG 0.467051 1:+70140779 MsG0180003920.01.T01:three_prime_UTR
TTTATTATGACTTGAAATGA+TGG 0.467990 1:+70140654 MsG0180003920.01.T01:three_prime_UTR
ACTTCTCGTTCTTCTCGTGC+TGG 0.468244 1:+70139340 MsG0180003920.01.T01:CDS
AAATGCTAGCAAAGATTTGA+AGG 0.477120 1:+70140431 MsG0180003920.01.T01:CDS
GACTGCTGAAGTTCTTGAGC+TGG 0.480553 1:+70140404 MsG0180003920.01.T01:CDS
CTCTTTGCTTCAGCTGTCTG+TGG 0.485476 1:-70140317 None:intergenic
GCATTTGCAGCTTGCTATCA+GGG 0.487874 1:+70140473 MsG0180003920.01.T01:CDS
GCTGAAGTTCTTGAGCTGGC+TGG 0.490963 1:+70140408 MsG0180003920.01.T01:CDS
TCAGGTGTTTAAGCAATGGC+AGG 0.495436 1:+70139247 MsG0180003920.01.T01:intron
ATGGCAGGAAAAGGAGGAAA+AGG 0.512104 1:+70139262 MsG0180003920.01.T01:CDS
GGAACTTGATACCCTTATCA+AGG 0.512125 1:+70140503 MsG0180003920.01.T01:CDS
GTTTAAGCAATGGCAGGAAA+AGG 0.523608 1:+70139253 MsG0180003920.01.T01:exon
CTTGTCTTTGTTAGCCGCGG+TGG 0.527714 1:-70139302 None:intergenic
GAAATGATGGTGATCACAGT+AGG 0.529426 1:+70140667 MsG0180003920.01.T01:three_prime_UTR
GTCCTTGTCTTTGTTAGCCG+CGG 0.546728 1:-70139305 None:intergenic
GCAAAGATTTGAAGGTGAAG+AGG 0.563947 1:+70140439 MsG0180003920.01.T01:CDS
TGGTGGTTGTAGTTTCCTGT+GGG 0.573166 1:+70140288 MsG0180003920.01.T01:intron
ATGGTGGTTGTAGTTTCCTG+TGG 0.574055 1:+70140287 MsG0180003920.01.T01:intron
GGTTGTAGTTTCCTGTGGGT+AGG 0.590033 1:+70140292 MsG0180003920.01.T01:intron
AGCAGTCAGATACTCCAGAA+TGG 0.591746 1:-70140388 None:intergenic
ATAGCAAGCTGCAAATGCCT+TGG 0.592261 1:-70140468 None:intergenic
GCTTGCTATCAGGGGAGATG+AGG 0.593400 1:+70140482 MsG0180003920.01.T01:CDS
GTCCAAGCTAATGGACGTGT+CGG 0.596665 1:+70140339 MsG0180003920.01.T01:CDS
TAAATGGTGGTATTCTTATG+TGG 0.602361 1:+70140729 MsG0180003920.01.T01:three_prime_UTR
AGCACGAGAAGAACGAGAAG+TGG 0.609010 1:-70139338 None:intergenic
CATTTGCAGCTTGCTATCAG+GGG 0.612353 1:+70140474 MsG0180003920.01.T01:CDS
TAAGCAATGGCAGGAAAAGG+AGG 0.618835 1:+70139256 MsG0180003920.01.T01:exon
AAATGATGGTGATCACAGTA+GGG 0.620882 1:+70140668 MsG0180003920.01.T01:three_prime_UTR
AAGGGAACAATTGCTGGTGG+TGG 0.621502 1:+70140522 MsG0180003920.01.T01:CDS
GAACTTGATACCCTTATCAA+GGG 0.630061 1:+70140504 MsG0180003920.01.T01:CDS
ATCAAGGACTTGTGGATGTG+AGG 0.631787 1:-70140552 None:intergenic
GCACGAGAAGAACGAGAAGT+GGG 0.642443 1:-70139337 None:intergenic
CACCGCGGCTAACAAAGACA+AGG 0.646788 1:+70139303 MsG0180003920.01.T01:CDS
TGTCTGTGGATCCTACCCAC+AGG 0.647982 1:-70140303 None:intergenic
ATCAAGGGAACAATTGCTGG+TGG 0.659902 1:+70140519 MsG0180003920.01.T01:CDS
ATATGGTAGTGTGTAAATGG+TGG 0.704651 1:+70140716 MsG0180003920.01.T01:three_prime_UTR
AGGTGAAGAGGATTACACCA+AGG 0.739394 1:+70140451 MsG0180003920.01.T01:CDS
CGTTGCAGCGAAAACCACCG+CGG 0.789660 1:+70139288 MsG0180003920.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTTAAGTTACAAATATT+AGG - Chr1:70140007-70140026 None:intergenic 15.0%
!!! ATTTCTGTGTAAAATTTTTA+GGG + Chr1:70139514-70139533 MsG0180003920.01.T01:intron 15.0%
!!! TCGATTTTCTTTATTTTTTA+GGG + Chr1:70139404-70139423 MsG0180003920.01.T01:intron 15.0%
!!! TTCGATTTTCTTTATTTTTT+AGG + Chr1:70139403-70139422 MsG0180003920.01.T01:intron 15.0%
!! ATCTGTAAATGATAATTAAC+AGG - Chr1:70140195-70140214 None:intergenic 20.0%
!! ATTTGTAACTTAAGAATTTG+AGG + Chr1:70140010-70140029 MsG0180003920.01.T01:intron 20.0%
!! TAACAAAACAAAAATAACAG+AGG - Chr1:70140234-70140253 None:intergenic 20.0%
!! TCAAGTCATAATAAAAAACA+CGG - Chr1:70140649-70140668 None:intergenic 20.0%
!! TTTATTATGACTTGAAATGA+TGG + Chr1:70140654-70140673 MsG0180003920.01.T01:three_prime_UTR 20.0%
!!! ATTAACTGTAAAATTTGCTA+TGG + Chr1:70140268-70140287 MsG0180003920.01.T01:intron 20.0%
!!! GAATTTTGAATGAATTGATA+TGG + Chr1:70140699-70140718 MsG0180003920.01.T01:three_prime_UTR 20.0%
!!! GATTTCTGTGTAAAATTTTT+AGG + Chr1:70139513-70139532 MsG0180003920.01.T01:intron 20.0%
!!! GTAAGTTTAATTTTGATGTA+AGG + Chr1:70139946-70139965 MsG0180003920.01.T01:intron 20.0%
!!! TCTGTTCTTTAATTTTTGTA+GGG + Chr1:70139641-70139660 MsG0180003920.01.T01:intron 20.0%
!!! TTCTTTATTTTTTAGGGTTA+GGG + Chr1:70139410-70139429 MsG0180003920.01.T01:intron 20.0%
!!! TTTCTTTATTTTTTAGGGTT+AGG + Chr1:70139409-70139428 MsG0180003920.01.T01:intron 20.0%
! AAAATCGAAATTACGAAGAA+AGG - Chr1:70139392-70139411 None:intergenic 25.0%
! AAAGCAAAGAATTCATTCTT+TGG - Chr1:70140589-70140608 None:intergenic 25.0%
! AAATCGAAATTACGAAGAAA+GGG - Chr1:70139391-70139410 None:intergenic 25.0%
! ACAAAAATAACAGAGGAAAA+TGG - Chr1:70140227-70140246 None:intergenic 25.0%
! ATCTTTACACTAATAGTGTT+TGG + Chr1:70140087-70140106 MsG0180003920.01.T01:intron 25.0%
! CAAAAATAACAGAGGAAAAT+GGG - Chr1:70140226-70140245 None:intergenic 25.0%
! TGAGATTAAATTATTGCCTT+TGG + Chr1:70140149-70140168 MsG0180003920.01.T01:intron 25.0%
!! TTTAGAATTAAACCCTAGAT+GGG - Chr1:70139581-70139600 None:intergenic 25.0%
!! TTTGAAACAAAATTAAGCGA+TGG + Chr1:70139670-70139689 MsG0180003920.01.T01:intron 25.0%
!! TTTTTCGTACATGATTTTTC+TGG + Chr1:70139751-70139770 MsG0180003920.01.T01:intron 25.0%
!!! CTCTGTTCTTTAATTTTTGT+AGG + Chr1:70139640-70139659 MsG0180003920.01.T01:intron 25.0%
!!! CTTTAATTTTTGTAGGGTTA+GGG + Chr1:70139647-70139666 MsG0180003920.01.T01:intron 25.0%
!!! GGTGCTGTTTATTTTAATTA+GGG + Chr1:70140623-70140642 MsG0180003920.01.T01:three_prime_UTR 25.0%
!!! GTGTAAAATTTTTAGGGTTA+GGG + Chr1:70139520-70139539 MsG0180003920.01.T01:intron 25.0%
!!! TCTTTAATTTTTGTAGGGTT+AGG + Chr1:70139646-70139665 MsG0180003920.01.T01:intron 25.0%
!!! TGGTGCTGTTTATTTTAATT+AGG + Chr1:70140622-70140641 MsG0180003920.01.T01:three_prime_UTR 25.0%
!!! TGTGTAAAATTTTTAGGGTT+AGG + Chr1:70139519-70139538 MsG0180003920.01.T01:intron 25.0%
AAATGCTAGCAAAGATTTGA+AGG + Chr1:70140431-70140450 MsG0180003920.01.T01:CDS 30.0%
AACATCTACATGAAATCCAA+AGG - Chr1:70140168-70140187 None:intergenic 30.0%
ACGAAGAAAGGGAAAAAAAA+AGG - Chr1:70139380-70139399 None:intergenic 30.0%
CGAAGAAAGGGAAAAAAAAA+GGG - Chr1:70139379-70139398 None:intergenic 30.0%
TAAATGGTGGTATTCTTATG+TGG + Chr1:70140729-70140748 MsG0180003920.01.T01:three_prime_UTR 30.0%
TAGACGATAATTCTCATCTA+GGG + Chr1:70139448-70139467 MsG0180003920.01.T01:intron 30.0%
TTAGACGATAATTCTCATCT+AGG + Chr1:70139447-70139466 MsG0180003920.01.T01:intron 30.0%
TTAGATATTTGTGATGCTGT+TGG + Chr1:70140779-70140798 MsG0180003920.01.T01:three_prime_UTR 30.0%
TTCTTATGTGGTCATTTAGA+TGG + Chr1:70140741-70140760 MsG0180003920.01.T01:three_prime_UTR 30.0%
TTTATAATCAACCCCCAATT+GGG - Chr1:70139706-70139725 None:intergenic 30.0%
! ACAAAATTAAGCGATGGTTT+TGG + Chr1:70139676-70139695 MsG0180003920.01.T01:intron 30.0%
! AGCAGAGAAGTAATTTTGTT+GGG + Chr1:70139915-70139934 MsG0180003920.01.T01:intron 30.0%
! CAAAATTAAGCGATGGTTTT+GGG + Chr1:70139677-70139696 MsG0180003920.01.T01:intron 30.0%
! TAGCAGAGAAGTAATTTTGT+TGG + Chr1:70139914-70139933 MsG0180003920.01.T01:intron 30.0%
! TTGATATGGTAGTGTGTAAA+TGG + Chr1:70140713-70140732 MsG0180003920.01.T01:three_prime_UTR 30.0%
!! AACTGTAAAATTTGCTATGG+TGG + Chr1:70140271-70140290 MsG0180003920.01.T01:intron 30.0%
!! CTTTAGAATTAAACCCTAGA+TGG - Chr1:70139582-70139601 None:intergenic 30.0%
!!! ATTTTCAGGTGTTTAAGCAA+TGG + Chr1:70139243-70139262 MsG0180003920.01.T01:intron 30.0%
!!! CAGTTGTCGTTTTATTTAAC+CGG + Chr1:70140114-70140133 MsG0180003920.01.T01:intron 30.0%
AATCTCAAAAATCAGCTCTC+CGG - Chr1:70140136-70140155 None:intergenic 35.0%
AGCAATTGTTCCCTTGATAA+GGG - Chr1:70140517-70140536 None:intergenic 35.0%
CTTTATAATCAACCCCCAAT+TGG - Chr1:70139707-70139726 None:intergenic 35.0%
GAAAACTAGAAGAGAAACCT+TGG - Chr1:70139155-70139174 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG + Chr1:70140504-70140523 MsG0180003920.01.T01:CDS 35.0%
! AAATGATGGTGATCACAGTA+GGG + Chr1:70140668-70140687 MsG0180003920.01.T01:three_prime_UTR 35.0%
! ATATGGTAGTGTGTAAATGG+TGG + Chr1:70140716-70140735 MsG0180003920.01.T01:three_prime_UTR 35.0%
! TTTTGTTGATCAAGGACTTG+TGG - Chr1:70140563-70140582 None:intergenic 35.0%
!! TCTTTGCTTTTGTTGTCATG+TGG + Chr1:70140599-70140618 MsG0180003920.01.T01:three_prime_UTR 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG - Chr1:70140571-70140590 None:intergenic 35.0%
AAGCAAAGAGTCCAAGCTAA+TGG + Chr1:70140330-70140349 MsG0180003920.01.T01:CDS 40.0%
AGTGTATTTGGCATCCATTC+TGG + Chr1:70140374-70140393 MsG0180003920.01.T01:CDS 40.0%
AGTTTCCAGATACCCATCTA+GGG + Chr1:70139566-70139585 MsG0180003920.01.T01:intron 40.0%
CAGCAATTGTTCCCTTGATA+AGG - Chr1:70140518-70140537 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG + Chr1:70140516-70140535 MsG0180003920.01.T01:CDS 40.0%
GCAAAGATTTGAAGGTGAAG+AGG + Chr1:70140439-70140458 MsG0180003920.01.T01:CDS 40.0%
GGAACTTGATACCCTTATCA+AGG + Chr1:70140503-70140522 MsG0180003920.01.T01:CDS 40.0%
GTTTAAGCAATGGCAGGAAA+AGG + Chr1:70139253-70139272 MsG0180003920.01.T01:exon 40.0%
TAGTTTCCAGATACCCATCT+AGG + Chr1:70139565-70139584 MsG0180003920.01.T01:intron 40.0%
TTAAACCCTAGATGGGTATC+TGG - Chr1:70139574-70139593 None:intergenic 40.0%
! GAAATGATGGTGATCACAGT+AGG + Chr1:70140667-70140686 MsG0180003920.01.T01:three_prime_UTR 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG + Chr1:70139422-70139441 MsG0180003920.01.T01:intron 40.0%
! TCGATTAACACGTTTTGCTC+TGG + Chr1:70139219-70139238 MsG0180003920.01.T01:intron 40.0%
!! TTGCTTTTGTTGTCATGTGG+TGG + Chr1:70140602-70140621 MsG0180003920.01.T01:three_prime_UTR 40.0%
!!! ATGGTTTTGGGATACCCAAT+TGG + Chr1:70139689-70139708 MsG0180003920.01.T01:intron 40.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG + Chr1:70139229-70139248 MsG0180003920.01.T01:intron 40.0%
!!! TGGTTTTGGGATACCCAATT+GGG + Chr1:70139690-70139709 MsG0180003920.01.T01:intron 40.0%
AGCAACAGCTGCAGTGTATT+TGG + Chr1:70140362-70140381 MsG0180003920.01.T01:CDS 45.0%
AGCAGTCAGATACTCCAGAA+TGG - Chr1:70140391-70140410 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG + Chr1:70140451-70140470 MsG0180003920.01.T01:CDS 45.0%
ATAGCAAGCTGCAAATGCCT+TGG - Chr1:70140471-70140490 None:intergenic 45.0%
ATCAAGGACTTGTGGATGTG+AGG - Chr1:70140555-70140574 None:intergenic 45.0%
ATCAAGGGAACAATTGCTGG+TGG + Chr1:70140519-70140538 MsG0180003920.01.T01:CDS 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG + Chr1:70139262-70139281 MsG0180003920.01.T01:CDS 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG + Chr1:70140287-70140306 MsG0180003920.01.T01:intron 45.0%
CTCTTTCTCTCTCGATTCCA+AGG + Chr1:70139135-70139154 MsG0180003920.01.T01:five_prime_UTR 45.0%
TAAGCAATGGCAGGAAAAGG+AGG + Chr1:70139256-70139275 MsG0180003920.01.T01:exon 45.0%
TCAGGTGTTTAAGCAATGGC+AGG + Chr1:70139247-70139266 MsG0180003920.01.T01:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG + Chr1:70140288-70140307 MsG0180003920.01.T01:intron 45.0%
TTCTTCTCGTGCTGGAATTC+AGG + Chr1:70139348-70139367 MsG0180003920.01.T01:CDS 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG + Chr1:70140474-70140493 MsG0180003920.01.T01:CDS 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG + Chr1:70140473-70140492 MsG0180003920.01.T01:CDS 45.0%
!!! GGTTTTGGGATACCCAATTG+GGG + Chr1:70139691-70139710 MsG0180003920.01.T01:intron 45.0%
!!! GTTTTGGGATACCCAATTGG+GGG + Chr1:70139692-70139711 MsG0180003920.01.T01:intron 45.0%
AAGGGAACAATTGCTGGTGG+TGG + Chr1:70140522-70140541 MsG0180003920.01.T01:CDS 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG + Chr1:70139340-70139359 MsG0180003920.01.T01:CDS 50.0%
AGCACGAGAAGAACGAGAAG+TGG - Chr1:70139341-70139360 None:intergenic 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG - Chr1:70140320-70140339 None:intergenic 50.0%
GACTGCTGAAGTTCTTGAGC+TGG + Chr1:70140404-70140423 MsG0180003920.01.T01:CDS 50.0%
GCACGAGAAGAACGAGAAGT+GGG - Chr1:70139340-70139359 None:intergenic 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG + Chr1:70140292-70140311 MsG0180003920.01.T01:intron 50.0%
GTCCTTGTCTTTGTTAGCCG+CGG - Chr1:70139308-70139327 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG + Chr1:70140339-70140358 MsG0180003920.01.T01:CDS 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG + Chr1:70140472-70140491 MsG0180003920.01.T01:CDS 50.0%
CACCGCGGCTAACAAAGACA+AGG + Chr1:70139303-70139322 MsG0180003920.01.T01:CDS 55.0%
CTCCGACACGTCCATTAGCT+TGG - Chr1:70140344-70140363 None:intergenic 55.0%
CTTGTCTTTGTTAGCCGCGG+TGG - Chr1:70139305-70139324 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG + Chr1:70140408-70140427 MsG0180003920.01.T01:CDS 55.0%
TGTCTGTGGATCCTACCCAC+AGG - Chr1:70140306-70140325 None:intergenic 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG + Chr1:70140482-70140501 MsG0180003920.01.T01:CDS 55.0%
CGTTGCAGCGAAAACCACCG+CGG + Chr1:70139288-70139307 MsG0180003920.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 70139071 70140846 70139071 ID=MsG0180003920.01;Name=MsG0180003920.01
Chr1 mRNA 70139071 70140846 70139071 ID=MsG0180003920.01.T01;Parent=MsG0180003920.01;Name=MsG0180003920.01.T01;_AED=0.47;_eAED=0.47;_QI=97|1|1|1|0.5|0.33|3|250|134
Chr1 exon 70139071 70139156 70139071 ID=MsG0180003920.01.T01:exon:6084;Parent=MsG0180003920.01.T01
Chr1 exon 70139251 70139369 70139251 ID=MsG0180003920.01.T01:exon:6085;Parent=MsG0180003920.01.T01
Chr1 exon 70140300 70140846 70140300 ID=MsG0180003920.01.T01:exon:6086;Parent=MsG0180003920.01.T01
Chr1 five_prime_UTR 70139071 70139156 70139071 ID=MsG0180003920.01.T01:five_prime_utr;Parent=MsG0180003920.01.T01
Chr1 five_prime_UTR 70139251 70139261 70139251 ID=MsG0180003920.01.T01:five_prime_utr;Parent=MsG0180003920.01.T01
Chr1 CDS 70139262 70139369 70139262 ID=MsG0180003920.01.T01:cds;Parent=MsG0180003920.01.T01
Chr1 CDS 70140300 70140596 70140300 ID=MsG0180003920.01.T01:cds;Parent=MsG0180003920.01.T01
Chr1 three_prime_UTR 70140597 70140846 70140597 ID=MsG0180003920.01.T01:three_prime_utr;Parent=MsG0180003920.01.T01
Gene Sequence

>MsG0180003920.01.T01

ATGGCAGGAAAAGGAGGAAAAGGACTCGTTGCAGCGAAAACCACCGCGGCTAACAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGAATTCAGTTTCCTGTGGGTAGGATCCACAGACAGCTGAAGCAAAGAGTCCAAGCTAATGGACGTGTCGGAGCAACAGCTGCAGTGTATTTGGCATCCATTCTGGAGTATCTGACTGCTGAAGTTCTTGAGCTGGCTGGAAATGCTAGCAAAGATTTGAAGGTGAAGAGGATTACACCAAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAACTTGATACCCTTATCAAGGGAACAATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACTGCCAAAGAATGA

Protein sequence

>MsG0180003920.01.T01

MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE*