AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000835.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000835.01.T01 MTR_1g007480 98.707 232 3 0 1 232 1 232 2.54e-170 468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000835.01.T01 AT4G31460 66.497 197 66 0 1 197 1 197 1.96e-96 280

Find 73 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAATAAACTCTTATTT+TGG 0.198796 1:+11859140 None:intergenic
ACCCATAACAACTTTGCTTT+TGG 0.225318 1:+11864050 None:intergenic
TCCCAAAAGCAAAGTTGTTA+TGG 0.322622 1:-11864052 MsG0180000835.01.T01:CDS
TTTGTATGAGGCAATTGTTT+TGG 0.323942 1:-11858949 MsG0180000835.01.T01:three_prime_UTR
CAAAAGATGGACACAGAAAT+AGG 0.324056 1:-11859624 MsG0180000835.01.T01:CDS
TTGTCCACAATAGGCTATAA+TGG 0.332725 1:-11858833 MsG0180000835.01.T01:three_prime_UTR
TTGTGAAGTGATAGGGAAAA+TGG 0.333186 1:-11864169 MsG0180000835.01.T01:intron
GCTGGGAAACATATTCAGTT+TGG 0.336618 1:-11864006 MsG0180000835.01.T01:CDS
TGGACCTTCTGGCTTGTATA+AGG 0.347875 1:-11858929 MsG0180000835.01.T01:three_prime_UTR
CTGGGAAACATATTCAGTTT+GGG 0.362976 1:-11864005 MsG0180000835.01.T01:CDS
CCCAAAAGCAAAGTTGTTAT+GGG 0.364570 1:-11864051 MsG0180000835.01.T01:CDS
GATGAAGAAAGTGCTGAAAA+AGG 0.397823 1:-11864127 MsG0180000835.01.T01:CDS
GAAAGTTTAGAGCATAAAAC+CGG 0.399186 1:+11859189 None:intergenic
TTAGTGAAGATGGTGGTAAC+AGG 0.399831 1:-11863975 MsG0180000835.01.T01:intron
ACAGCGATGAAAGGTTAAAA+TGG 0.402345 1:+11864371 None:intergenic
GGATGAAGCGAAGTTTGAAC+AGG 0.428127 1:-11859526 MsG0180000835.01.T01:CDS
AGCCTCTTATCTTGTACGTT+AGG 0.429435 1:+11859756 None:intergenic
TCTCCAACTTTGAGCCTGTC+AGG 0.432513 1:+11859312 None:intergenic
TCAAACTTCGCTTCATCCTC+CGG 0.436492 1:+11859531 None:intergenic
GGGAATAGTGTTAGTGAAGA+TGG 0.437529 1:-11863985 MsG0180000835.01.T01:CDS
AGATTTGAGATTAGCTGAAA+GGG 0.447839 1:-11859496 MsG0180000835.01.T01:CDS
GAGAAGTTGTATGAAGAGCT+TGG 0.456277 1:-11859579 MsG0180000835.01.T01:CDS
GCACTCTTAGTAAATCTAGA+AGG 0.457321 1:-11859095 MsG0180000835.01.T01:three_prime_UTR
GTGCCCTAGTTGTCCACAAT+AGG 0.469882 1:-11858842 MsG0180000835.01.T01:three_prime_UTR
AACCTAACGTACAAGATAAG+AGG 0.473606 1:-11859758 MsG0180000835.01.T01:CDS
CGAAGGAATCGATAGAGAAA+TGG 0.474673 1:-11864077 MsG0180000835.01.T01:CDS
ATAGGGAAAATGGCGTTTAG+AGG 0.475804 1:-11864159 MsG0180000835.01.T01:exon
AAGATTTGAGATTAGCTGAA+AGG 0.477923 1:-11859497 MsG0180000835.01.T01:CDS
TAAGAGTTTATTCCTTGTAG+TGG 0.480038 1:-11859134 MsG0180000835.01.T01:three_prime_UTR
TAATACGAATGTGACGATCT+AGG 0.481354 1:+11859721 None:intergenic
GAAGACTCCTTATCAAAAGA+TGG 0.484789 1:-11859637 MsG0180000835.01.T01:CDS
TAGTTTGTGCTTGTTCATGC+TGG 0.485930 1:+11859440 None:intergenic
TTTAACCTTTCATCGCTGTC+CGG 0.494675 1:-11864367 MsG0180000835.01.T01:five_prime_UTR
ATTGCCTCATACAAATGAAA+AGG 0.495615 1:+11858957 None:intergenic
ATAGCCTATTGTGGACAACT+AGG 0.509747 1:+11858838 None:intergenic
CTGATAGGACAAGGAGAACA+TGG 0.516494 1:-11859782 MsG0180000835.01.T01:intron
CGAGGGAGCTGCTAAAATTG+AGG 0.519910 1:-11859391 MsG0180000835.01.T01:CDS
CTTCGTTGCATCGACAAGGC+AGG 0.525155 1:-11859681 MsG0180000835.01.T01:CDS
GAGGGAGCTGCTAAAATTGA+GGG 0.526843 1:-11859390 MsG0180000835.01.T01:CDS
GTATTTGGGTGCACCTATGC+AGG 0.529294 1:-11859033 MsG0180000835.01.T01:three_prime_UTR
GAACAAGCACAAACTAATTG+AGG 0.531079 1:-11859433 MsG0180000835.01.T01:CDS
AAGAGTTTATTCCTTGTAGT+GGG 0.532552 1:-11859133 MsG0180000835.01.T01:three_prime_UTR
ATTGAGGTAGAAAGTAAAGA+TGG 0.533016 1:-11859417 MsG0180000835.01.T01:CDS
CTCATCGAGTATGAAAGTCT+TGG 0.534565 1:-11859233 MsG0180000835.01.T01:three_prime_UTR
ACTCGATTCATCAAAGCGAT+TGG 0.536622 1:-11859358 MsG0180000835.01.T01:CDS
TGAAGAGCTTGGAAAGAAAG+AGG 0.537302 1:-11859568 MsG0180000835.01.T01:CDS
GCTCCTGACAGGCTCAAAGT+TGG 0.542014 1:-11859315 MsG0180000835.01.T01:CDS
GGAAAATTGATCCCACTACA+AGG 0.546835 1:+11859122 None:intergenic
CGTATGTGTTAGCTCCTGAC+AGG 0.548037 1:-11859326 MsG0180000835.01.T01:CDS
CGCCCTTCGTTGCATCGACA+AGG 0.548075 1:-11859685 MsG0180000835.01.T01:CDS
GGAGCTAACACATACGAGAC+AGG 0.555598 1:+11859333 None:intergenic
CGAGTTTATCAGTGTTTCTG+CGG 0.561225 1:+11864332 None:intergenic
TAAACCATTATAGCCTATTG+TGG 0.561326 1:+11858829 None:intergenic
TGCCTTGTCGATGCAACGAA+GGG 0.567208 1:+11859683 None:intergenic
CTGCCTTGTCGATGCAACGA+AGG 0.571094 1:+11859682 None:intergenic
TCTATCGATTCCTTCGCTCG+TGG 0.572095 1:+11864084 None:intergenic
GAGATATTAGTCACCTGCAT+AGG 0.584310 1:+11859020 None:intergenic
AGATTTACTAAGAGTGCATG+AGG 0.592242 1:+11859101 None:intergenic
AAACACTGATAAACTCGTCC+AGG 0.593011 1:-11864326 MsG0180000835.01.T01:intron
TAGCCTATTGTGGACAACTA+GGG 0.597219 1:+11858839 None:intergenic
AGAAAGTAAAGATGGTGACG+AGG 0.602281 1:-11859409 MsG0180000835.01.T01:CDS
GTTTATCAGTGTTTCTGCGG+TGG 0.614015 1:+11864335 None:intergenic
ATGAAAGGTTAAAATGGCAA+CGG 0.620217 1:+11864377 None:intergenic
GAATATGACTCCACGAGCGA+AGG 0.626713 1:-11864094 MsG0180000835.01.T01:CDS
GATGCAACGAAGGGCGTGAG+TGG 0.648741 1:+11859692 None:intergenic
CGTTGCATCGACAAGGCAGG+CGG 0.656785 1:-11859678 MsG0180000835.01.T01:CDS
GATGTTATGTCAGCTGATGA+CGG 0.663369 1:-11859275 MsG0180000835.01.T01:three_prime_UTR
AGTACCTTATACAAGCCAGA+AGG 0.672103 1:+11858925 None:intergenic
GTTATGGGTCGTGCAAAACG+TGG 0.672525 1:-11864036 MsG0180000835.01.T01:CDS
AATAGTGTTAGTGAAGATGG+TGG 0.675297 1:-11863982 MsG0180000835.01.T01:CDS
GAAAGTAAAGATGGTGACGA+GGG 0.680500 1:-11859408 MsG0180000835.01.T01:CDS
GATGAAGCGAAGTTTGAACA+GGG 0.683364 1:-11859525 MsG0180000835.01.T01:CDS
AAAGTTTAGAGCATAAAACC+GGG 0.700028 1:+11859190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAGCTTAATTTAA+AGG - Chr1:11860582-11860601 MsG0180000835.01.T01:intron 10.0%
!! AAATAATAGCTTAATTTAAA+GGG - Chr1:11860583-11860602 MsG0180000835.01.T01:intron 10.0%
!!! ATATTGTTAATTTTGTATTT+GGG - Chr1:11864161-11864180 MsG0180000835.01.T01:exon 10.0%
!! AATAAGAGATTCATTAAATA+AGG - Chr1:11860860-11860879 MsG0180000835.01.T01:intron 15.0%
!! ATAAGAGATTCATTAAATAA+GGG - Chr1:11860861-11860880 MsG0180000835.01.T01:intron 15.0%
!!! ATTTTTATAGTTCATCTTAA+AGG + Chr1:11861160-11861179 None:intergenic 15.0%
!!! CATATTGTTAATTTTGTATT+TGG - Chr1:11864160-11864179 MsG0180000835.01.T01:exon 15.0%
!! AATGTTAAGTTATTTGTGTT+TGG - Chr1:11859510-11859529 MsG0180000835.01.T01:CDS 20.0%
!! ACATAAAATCTTGATTCTTT+CGG + Chr1:11861067-11861086 None:intergenic 20.0%
!! ATTATTTATTCTTTGACTAG+TGG + Chr1:11862722-11862741 None:intergenic 20.0%
!! ATTCTACATTCTACATAATT+TGG + Chr1:11860897-11860916 None:intergenic 20.0%
!! TAAGAGATTCATTAAATAAG+GGG - Chr1:11860862-11860881 MsG0180000835.01.T01:intron 20.0%
!! TAGAAAACAATGATAACTAA+AGG - Chr1:11859986-11860005 MsG0180000835.01.T01:intron 20.0%
!! TAGTGATTCATGAATTAATA+GGG - Chr1:11859930-11859949 MsG0180000835.01.T01:intron 20.0%
!! TAGTTGTTAAATGAATACTA+TGG - Chr1:11860397-11860416 MsG0180000835.01.T01:intron 20.0%
!! TGTAATTTAATATGAAGTGT+CGG - Chr1:11859885-11859904 MsG0180000835.01.T01:intron 20.0%
!!! AACTAATTTTTAGTGTTTCA+AGG + Chr1:11860272-11860291 None:intergenic 20.0%
!!! ACTAATTTTTAGTGTTTCAA+GGG + Chr1:11860271-11860290 None:intergenic 20.0%
!!! ATAACATTGAAGTTCTAAAT+TGG + Chr1:11863285-11863304 None:intergenic 20.0%
!!! CCAGTAATAATTTTAGAAAA+TGG - Chr1:11860730-11860749 MsG0180000835.01.T01:intron 20.0%
!!! CCATTTTCTAAAATTATTAC+TGG + Chr1:11860733-11860752 None:intergenic 20.0%
!!! GTTTTCTAATCTACATAATT+AGG + Chr1:11859964-11859983 None:intergenic 20.0%
!!! TACTATCATTGTTATTGAAT+TGG - Chr1:11863026-11863045 MsG0180000835.01.T01:intron 20.0%
! AAATAGGAAAACCATTAGAA+AGG - Chr1:11862191-11862210 MsG0180000835.01.T01:intron 25.0%
! AACCATTATTAAAACAGAAC+TGG + Chr1:11862480-11862499 None:intergenic 25.0%
! AACTTTCCTTTAAACTTAAG+TGG + Chr1:11861807-11861826 None:intergenic 25.0%
! AATATGCTCAAAACAACTTA+TGG + Chr1:11859676-11859695 None:intergenic 25.0%
! ACAACTTTATTAAGCACTTA+CGG + Chr1:11859822-11859841 None:intergenic 25.0%
! ACATAAACACTTATGTGATA+AGG - Chr1:11859789-11859808 MsG0180000835.01.T01:intron 25.0%
! AGAACTTCAATGTTATCATT+TGG - Chr1:11863289-11863308 MsG0180000835.01.T01:intron 25.0%
! ATTCATTAAATAAGGGGATA+AGG - Chr1:11860868-11860887 MsG0180000835.01.T01:intron 25.0%
! CAACAAACAGCAAATAAAAA+TGG + Chr1:11859279-11859298 None:intergenic 25.0%
! CACAAAAGCAAAAAACATTA+AGG + Chr1:11859024-11859043 None:intergenic 25.0%
! CATAAAATCTTGATTCTTTC+GGG + Chr1:11861066-11861085 None:intergenic 25.0%
! CATAAACACTTATGTGATAA+GGG - Chr1:11859790-11859809 MsG0180000835.01.T01:intron 25.0%
! CATGAAAAATTCTAACATGA+AGG + Chr1:11860520-11860539 None:intergenic 25.0%
! GTAGTGATTCATGAATTAAT+AGG - Chr1:11859929-11859948 MsG0180000835.01.T01:intron 25.0%
! GTTCTATCATAAACCATATT+TGG + Chr1:11862240-11862259 None:intergenic 25.0%
! GTTGGAATTAAACTGAAAAA+AGG + Chr1:11858920-11858939 None:intergenic 25.0%
! TATAAAACAACCATAGCTAA+AGG - Chr1:11860916-11860935 MsG0180000835.01.T01:intron 25.0%
! TATAAAACCACACAAAAATG+AGG + Chr1:11863004-11863023 None:intergenic 25.0%
! TCTTCCAAACATACAATTAA+AGG + Chr1:11863346-11863365 None:intergenic 25.0%
! TTGTATTAATCCTTTAGCTA+TGG + Chr1:11860929-11860948 None:intergenic 25.0%
! TTTCTATAAGAATTCCAAGA+TGG - Chr1:11859694-11859713 MsG0180000835.01.T01:CDS 25.0%
! TTTCTTGTTAGAAAGACAAA+TGG + Chr1:11860977-11860996 None:intergenic 25.0%
!! AAAGTACCACTTAAGTTTAA+AGG - Chr1:11861798-11861817 MsG0180000835.01.T01:intron 25.0%
!! TTTTCCTTTTCATTTGTATG+AGG - Chr1:11864247-11864266 MsG0180000835.01.T01:intron 25.0%
!!! AAAAACATTAAGGCTTTGTT+TGG + Chr1:11859014-11859033 None:intergenic 25.0%
!!! ATTTTCATGCTTTAGCTTAT+TGG - Chr1:11859324-11859343 MsG0180000835.01.T01:CDS 25.0%
!!! CAAGGAATAAACTCTTATTT+TGG + Chr1:11864071-11864090 None:intergenic 25.0%
!!! CACTTAAACTGTCAATTTTT+TGG - Chr1:11862886-11862905 MsG0180000835.01.T01:intron 25.0%
!!! GTTATTTTGATAAACCATCT+TGG + Chr1:11859711-11859730 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - Chr1:11862062-11862081 MsG0180000835.01.T01:intron 25.0%
!!! TCTTCAATGGATTCTTTTAA+TGG - Chr1:11862942-11862961 MsG0180000835.01.T01:intron 25.0%
!!! TGAAGTTCTAAATTGGATTA+TGG + Chr1:11863278-11863297 None:intergenic 25.0%
!!! TTTGGATATTTTAAAACGAG+CGG + Chr1:11858996-11859015 None:intergenic 25.0%
!!! TTTTCATGCTTTAGCTTATT+GGG - Chr1:11859325-11859344 MsG0180000835.01.T01:CDS 25.0%
!!! TTTTTTCTAATGACTCTGAT+AGG - Chr1:11863411-11863430 MsG0180000835.01.T01:intron 25.0%
AAAAGGTTTAGAAGAAAACC+TGG + Chr1:11858903-11858922 None:intergenic 30.0%
AAACATACAATTAAAGGCGA+AGG + Chr1:11863340-11863359 None:intergenic 30.0%
AAAGGAGATATAGGTTCTTT+CGG + Chr1:11860121-11860140 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG - Chr1:11862200-11862219 MsG0180000835.01.T01:intron 30.0%
AACTAGAGATGATAGAGAAA+AGG + Chr1:11861629-11861648 None:intergenic 30.0%
AAGAGTTTATTCCTTGTAGT+GGG - Chr1:11864075-11864094 MsG0180000835.01.T01:CDS 30.0%
AATAATAGTTTCGTGATAGC+TGG - Chr1:11863077-11863096 MsG0180000835.01.T01:intron 30.0%
ACACGTTGATACCAATAATA+AGG - Chr1:11859400-11859419 MsG0180000835.01.T01:CDS 30.0%
ACCAACTGAATTAAGAATCA+TGG + Chr1:11862394-11862413 None:intergenic 30.0%
ACCATGATTCTTAATTCAGT+TGG - Chr1:11862390-11862409 MsG0180000835.01.T01:intron 30.0%
AGTACATATCTTCTTGATTC+TGG - Chr1:11863119-11863138 MsG0180000835.01.T01:intron 30.0%
ATGAAAGGTTAAAATGGCAA+CGG + Chr1:11858834-11858853 None:intergenic 30.0%
ATTGAGGTAGAAAGTAAAGA+TGG - Chr1:11863791-11863810 MsG0180000835.01.T01:intron 30.0%
ATTGCCTCATACAAATGAAA+AGG + Chr1:11864254-11864273 None:intergenic 30.0%
CACGTTGATACCAATAATAA+GGG - Chr1:11859401-11859420 MsG0180000835.01.T01:CDS 30.0%
CACTTACTTGATTCTTATGT+TGG + Chr1:11861889-11861908 None:intergenic 30.0%
TAAACCATTATAGCCTATTG+TGG + Chr1:11864382-11864401 None:intergenic 30.0%
TAAGAGTTTATTCCTTGTAG+TGG - Chr1:11864074-11864093 MsG0180000835.01.T01:CDS 30.0%
TAATTGTATGTTTGGAAGAC+TGG - Chr1:11863347-11863366 MsG0180000835.01.T01:intron 30.0%
TAGCTGTTAAGTGAATACTA+TGG - Chr1:11861545-11861564 MsG0180000835.01.T01:intron 30.0%
TATTGAGTGTGCAGAATATA+TGG + Chr1:11861715-11861734 None:intergenic 30.0%
TCCAAACAAACCCTTATTAT+TGG + Chr1:11859414-11859433 None:intergenic 30.0%
TCGTAAGATACCTATGATTA+TGG - Chr1:11860348-11860367 MsG0180000835.01.T01:intron 30.0%
TGATTCTTAATTCAGTTGGT+TGG - Chr1:11862394-11862413 MsG0180000835.01.T01:intron 30.0%
TGGTTTATGATAGAACACTA+TGG - Chr1:11862244-11862263 MsG0180000835.01.T01:intron 30.0%
TTACGATTGACAATATCATG+AGG + Chr1:11860334-11860353 None:intergenic 30.0%
TTCATCTTAAAGGATTTGTC+AGG + Chr1:11861150-11861169 None:intergenic 30.0%
TTCCTTGTTACAAAGACAAA+CGG + Chr1:11860047-11860066 None:intergenic 30.0%
TTCGCCTTTAATTGTATGTT+TGG - Chr1:11863339-11863358 MsG0180000835.01.T01:intron 30.0%
TTCTCAACAGTATACGATTA+AGG - Chr1:11862642-11862661 MsG0180000835.01.T01:intron 30.0%
TTGAATGTAACCAAATGTGT+TGG - Chr1:11860758-11860777 MsG0180000835.01.T01:intron 30.0%
TTTGAAAAATGCATTCACGA+AGG + Chr1:11864316-11864335 None:intergenic 30.0%
! AAAGTTTAGAGCATAAAACC+GGG + Chr1:11864021-11864040 None:intergenic 30.0%
! AAATTATTACTGGTGTCAGT+CGG + Chr1:11860723-11860742 None:intergenic 30.0%
! AAGATTTGAGATTAGCTGAA+AGG - Chr1:11863711-11863730 MsG0180000835.01.T01:intron 30.0%
! AATGGTTTTCCTATTTTCCT+AGG + Chr1:11862187-11862206 None:intergenic 30.0%
! ACCAATAATAAGGGTTTGTT+TGG - Chr1:11859410-11859429 MsG0180000835.01.T01:CDS 30.0%
! AGATTTGAGATTAGCTGAAA+GGG - Chr1:11863712-11863731 MsG0180000835.01.T01:intron 30.0%
! GAAAGTTTAGAGCATAAAAC+CGG + Chr1:11864022-11864041 None:intergenic 30.0%
! GACTCTTCTCATTTGAAATT+TGG + Chr1:11862677-11862696 None:intergenic 30.0%
! GTAAAGTTTAGAACTCAATC+AGG + Chr1:11862975-11862994 None:intergenic 30.0%
! GTTTGTACAAGACTCTTTTT+AGG - Chr1:11862339-11862358 MsG0180000835.01.T01:intron 30.0%
! TAGTGTTTCAAGGGAAATTT+TGG + Chr1:11861387-11861406 None:intergenic 30.0%
! TATATTTGTTAGACTGGACA+TGG - Chr1:11863144-11863163 MsG0180000835.01.T01:intron 30.0%
! TCAAATTCAGAGTATTTGTC+AGG + Chr1:11860206-11860225 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG + Chr1:11862058-11862077 None:intergenic 30.0%
! TTAGCTTATTGGGTTGTATT+TGG - Chr1:11859335-11859354 MsG0180000835.01.T01:CDS 30.0%
! TTTGTATGAGGCAATTGTTT+TGG - Chr1:11864259-11864278 MsG0180000835.01.T01:intron 30.0%
!! ACAAATGGATTGAAAGACAT+TGG + Chr1:11860962-11860981 None:intergenic 30.0%
!! ACACACTTTTTAGTGTTTCA+AGG + Chr1:11861397-11861416 None:intergenic 30.0%
!! AGTCTTGGTTCTTTGATTTT+TGG - Chr1:11863990-11864009 MsG0180000835.01.T01:CDS 30.0%
!! ATCACTATTTAGACTAGCTT+AGG - Chr1:11859644-11859663 MsG0180000835.01.T01:CDS 30.0%
!! CACACTTTTTAGTGTTTCAA+GGG + Chr1:11861396-11861415 None:intergenic 30.0%
!! TTTGCTTTTGTGAAGTGATA+GGG - Chr1:11859032-11859051 MsG0180000835.01.T01:three_prime_UTR 30.0%
!! TTTTGCTTTTGTGAAGTGAT+AGG - Chr1:11859031-11859050 MsG0180000835.01.T01:three_prime_UTR 30.0%
!!! ATATTTTAAAACGAGCGGAA+TGG + Chr1:11858991-11859010 None:intergenic 30.0%
!!! CTCCAGTTCTGTTTTAATAA+TGG - Chr1:11862475-11862494 MsG0180000835.01.T01:intron 30.0%
!!! TACTTCTTTTTTCCCTACTT+AGG + Chr1:11859912-11859931 None:intergenic 30.0%
!!! TTAGTGTATGTTTGGTTTTG+CGG - Chr1:11859439-11859458 MsG0180000835.01.T01:CDS 30.0%
AACAATCCTACCTATAGAGA+TGG + Chr1:11862753-11862772 None:intergenic 35.0%
AACCTAACGTACAAGATAAG+AGG - Chr1:11863450-11863469 MsG0180000835.01.T01:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - Chr1:11862132-11862151 MsG0180000835.01.T01:intron 35.0%
AATAGTGTTAGTGAAGATGG+TGG - Chr1:11859226-11859245 MsG0180000835.01.T01:three_prime_UTR 35.0%
AATATTCCAAGCAGCATTGT+TGG + Chr1:11863173-11863192 None:intergenic 35.0%
AATCAGGTTAAAAGAGGTAG+AGG - Chr1:11862157-11862176 MsG0180000835.01.T01:intron 35.0%
AATCCAGAGAACTTTACATG+TGG + Chr1:11860164-11860183 None:intergenic 35.0%
ACAGCGATGAAAGGTTAAAA+TGG + Chr1:11858840-11858859 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG - Chr1:11862051-11862070 MsG0180000835.01.T01:intron 35.0%
AGGATGTATATAAGCTGACT+AGG + Chr1:11860314-11860333 None:intergenic 35.0%
AGTCATGAAATCTGAATGTC+AGG - Chr1:11860094-11860113 MsG0180000835.01.T01:intron 35.0%
ATAACTCATCGTATTCAAGC+TGG - Chr1:11861732-11861751 MsG0180000835.01.T01:intron 35.0%
ATAAGTACACAGTGCTACAT+AGG - Chr1:11860836-11860855 MsG0180000835.01.T01:intron 35.0%
ATACCTATGATTATGGTGTG+CGG - Chr1:11860355-11860374 MsG0180000835.01.T01:intron 35.0%
ATATCACTGTCCATCTCTAT+AGG - Chr1:11862740-11862759 MsG0180000835.01.T01:intron 35.0%
ATATGAAATGTCATGCGACT+TGG + Chr1:11862561-11862580 None:intergenic 35.0%
ATATTCCAAGCAGCATTGTT+GGG + Chr1:11863172-11863191 None:intergenic 35.0%
ATCAGGTTAAAAGAGGTAGA+GGG - Chr1:11862158-11862177 MsG0180000835.01.T01:intron 35.0%
ATCCGTTTGTCTTTGTAACA+AGG - Chr1:11860042-11860061 MsG0180000835.01.T01:intron 35.0%
ATCTTAAGATGCCTATGAGT+AGG - Chr1:11861495-11861514 MsG0180000835.01.T01:intron 35.0%
ATTGACAAGATTTGCCAAAC+AGG + Chr1:11861434-11861453 None:intergenic 35.0%
CAAAAGATGGACACAGAAAT+AGG - Chr1:11863584-11863603 MsG0180000835.01.T01:intron 35.0%
CCCAAAAGCAAAGTTGTTAT+GGG - Chr1:11859157-11859176 MsG0180000835.01.T01:three_prime_UTR 35.0%
CGTAAGAAGAGTAGATCAAA+TGG - Chr1:11862129-11862148 MsG0180000835.01.T01:intron 35.0%
CTATTTGCTCAAGTTACTAC+TGG + Chr1:11860652-11860671 None:intergenic 35.0%
CTGGGAAACATATTCAGTTT+GGG - Chr1:11859203-11859222 MsG0180000835.01.T01:three_prime_UTR 35.0%
GAAAATAGGCTTAGATGGTT+TGG - Chr1:11862076-11862095 MsG0180000835.01.T01:intron 35.0%
GAACAAGCACAAACTAATTG+AGG - Chr1:11863775-11863794 MsG0180000835.01.T01:intron 35.0%
GAAGACTCCTTATCAAAAGA+TGG - Chr1:11863571-11863590 MsG0180000835.01.T01:intron 35.0%
GACACAGATATAAGACACAT+AGG - Chr1:11860624-11860643 MsG0180000835.01.T01:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG + Chr1:11862205-11862224 None:intergenic 35.0%
GCACTCTTAGTAAATCTAGA+AGG - Chr1:11864113-11864132 MsG0180000835.01.T01:CDS 35.0%
GCTAATCAGAAAGGAGATAT+AGG + Chr1:11860130-11860149 None:intergenic 35.0%
GTCATGAAATCTGAATGTCA+GGG - Chr1:11860095-11860114 MsG0180000835.01.T01:intron 35.0%
TAACTCATCGTATTCAAGCT+GGG - Chr1:11861733-11861752 MsG0180000835.01.T01:intron 35.0%
TAATACGAATGTGACGATCT+AGG + Chr1:11863490-11863509 None:intergenic 35.0%
TAGTGTTTCAAGGGAAACTT+TGG + Chr1:11860262-11860281 None:intergenic 35.0%
TATCCACATGTAAAGTTCTC+TGG - Chr1:11860158-11860177 MsG0180000835.01.T01:intron 35.0%
TATCTACGCGTAAAGTACAT+TGG - Chr1:11861102-11861121 MsG0180000835.01.T01:intron 35.0%
TCCCAAAAGCAAAGTTGTTA+TGG - Chr1:11859156-11859175 MsG0180000835.01.T01:three_prime_UTR 35.0%
TCTTAAGATGCCTATGAGTA+GGG - Chr1:11861496-11861515 MsG0180000835.01.T01:intron 35.0%
TGCAAGCAATATAAATTGCG+AGG + Chr1:11860434-11860453 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - Chr1:11862071-11862090 MsG0180000835.01.T01:intron 35.0%
TTAGCTTCTAGTGTTGTATC+TGG - Chr1:11860542-11860561 MsG0180000835.01.T01:intron 35.0%
TTGATCTACTCTTCTTACGA+CGG + Chr1:11862128-11862147 None:intergenic 35.0%
TTGTCCACAATAGGCTATAA+TGG - Chr1:11864375-11864394 MsG0180000835.01.T01:five_prime_UTR 35.0%
TTGTGAAGTGATAGGGAAAA+TGG - Chr1:11859039-11859058 MsG0180000835.01.T01:three_prime_UTR 35.0%
! AAACACTAAAAAGTGTGTCC+GGG - Chr1:11861399-11861418 MsG0180000835.01.T01:intron 35.0%
! ACCCATAACAACTTTGCTTT+TGG + Chr1:11859161-11859180 None:intergenic 35.0%
! AGAGGTTGTATTCTTTTCAC+CGG - Chr1:11863658-11863677 MsG0180000835.01.T01:intron 35.0%
! AGATTTACTAAGAGTGCATG+AGG + Chr1:11864110-11864129 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - Chr1:11862224-11862243 MsG0180000835.01.T01:intron 35.0%
! CTATCATCTCTAGTTTGCAT+GGG - Chr1:11861634-11861653 MsG0180000835.01.T01:intron 35.0%
! CTGGCATATATTTGTTAGAC+TGG - Chr1:11863138-11863157 MsG0180000835.01.T01:intron 35.0%
! GAAACACTAAAAAGTGTGTC+CGG - Chr1:11861398-11861417 MsG0180000835.01.T01:intron 35.0%
! GCTGGCTAAATTTTCTTCAA+TGG - Chr1:11862929-11862948 MsG0180000835.01.T01:intron 35.0%
! GGATTGACTTAGTGTATGTT+TGG - Chr1:11859431-11859450 MsG0180000835.01.T01:CDS 35.0%
! GTTGCTTCTAGTTGTTGATT+AGG - Chr1:11859295-11859314 MsG0180000835.01.T01:exon 35.0%
! TCTATCATCTCTAGTTTGCA+TGG - Chr1:11861633-11861652 MsG0180000835.01.T01:intron 35.0%
! TCTGAAACAGTGCTGTTAAT+TGG + Chr1:11862517-11862536 None:intergenic 35.0%
! TCTGTGTCCATCTTTTGATA+AGG + Chr1:11863581-11863600 None:intergenic 35.0%
! TGGTTGCTCAATTTTGTGTT+AGG - Chr1:11863309-11863328 MsG0180000835.01.T01:intron 35.0%
! TTATTTCTTGCAACAGCACT+TGG - Chr1:11861590-11861609 MsG0180000835.01.T01:intron 35.0%
! TTTCATGATTTTGTCAGCAG+AGG - Chr1:11860470-11860489 MsG0180000835.01.T01:intron 35.0%
!! AAGAAAGTGCTGAAAAAGGT+TGG - Chr1:11859085-11859104 MsG0180000835.01.T01:three_prime_UTR 35.0%
!! ATTGAATTGGTCTTCTCAAC+TGG - Chr1:11863039-11863058 MsG0180000835.01.T01:intron 35.0%
!! CCCATAACAACTTTGCTTTT+GGG + Chr1:11859160-11859179 None:intergenic 35.0%
!! CGTGAATGCATTTTTCAAAG+AGG - Chr1:11864317-11864336 MsG0180000835.01.T01:intron 35.0%
!! CTATTGACCTCATTTTTGTG+TGG - Chr1:11862994-11863013 MsG0180000835.01.T01:intron 35.0%
!! GATGAAGAAAGTGCTGAAAA+AGG - Chr1:11859081-11859100 MsG0180000835.01.T01:three_prime_UTR 35.0%
!! GTTTCAAGGGAAATTTTGGT+TGG + Chr1:11861383-11861402 None:intergenic 35.0%
!! TATGCTAGATTGATTTGCTC+AGG - Chr1:11862451-11862470 MsG0180000835.01.T01:intron 35.0%
!! TTGAATTGGTCTTCTCAACT+GGG - Chr1:11863040-11863059 MsG0180000835.01.T01:intron 35.0%
!!! AATTTTTTGGAGTATCCGAG+TGG - Chr1:11862899-11862918 MsG0180000835.01.T01:intron 35.0%
!!! ATTTTTTGGAGTATCCGAGT+GGG - Chr1:11862900-11862919 MsG0180000835.01.T01:intron 35.0%
!!! CTTTGATTTTTGGTTCATCC+CGG - Chr1:11864000-11864019 MsG0180000835.01.T01:CDS 35.0%
!!! GCTGGCTAGTACTAATTTTT+TGG - Chr1:11863095-11863114 MsG0180000835.01.T01:intron 35.0%
AAACACTGATAAACTCGTCC+AGG - Chr1:11858882-11858901 MsG0180000835.01.T01:three_prime_UTR 40.0%
AAGGATTTGTCAGGAAGAAG+CGG + Chr1:11861141-11861160 None:intergenic 40.0%
AAGTAAGTGCAGTAGAGATG+AGG - Chr1:11861900-11861919 MsG0180000835.01.T01:intron 40.0%
ACAAGAATGAACCTGTTTGC+TGG - Chr1:11863244-11863263 MsG0180000835.01.T01:intron 40.0%
ACTCGATTCATCAAAGCGAT+TGG - Chr1:11863850-11863869 MsG0180000835.01.T01:intron 40.0%
AGATCAAATGGAGGAGAATC+AGG - Chr1:11862141-11862160 MsG0180000835.01.T01:intron 40.0%
AGCCTCTTATCTTGTACGTT+AGG + Chr1:11863455-11863474 None:intergenic 40.0%
AGTACCTTATACAAGCCAGA+AGG + Chr1:11864286-11864305 None:intergenic 40.0%
ATAGCCTATTGTGGACAACT+AGG + Chr1:11864373-11864392 None:intergenic 40.0%
ATAGGGAAAATGGCGTTTAG+AGG - Chr1:11859049-11859068 MsG0180000835.01.T01:three_prime_UTR 40.0%
ATGTGATGCGCTAATCAGAA+AGG + Chr1:11860139-11860158 None:intergenic 40.0%
CACTTCACTTATTGAGTGAC+GGG - Chr1:11862801-11862820 MsG0180000835.01.T01:intron 40.0%
CCACTTCACTTATTGAGTGA+CGG - Chr1:11862800-11862819 MsG0180000835.01.T01:intron 40.0%
CGAAGGAATCGATAGAGAAA+TGG - Chr1:11859131-11859150 MsG0180000835.01.T01:three_prime_UTR 40.0%
CGGGTTAAAATCATTACCCA+GGG + Chr1:11861047-11861066 None:intergenic 40.0%
CTAATGACTCTGATAGGACA+AGG - Chr1:11863417-11863436 MsG0180000835.01.T01:intron 40.0%
CTCATCGAGTATGAAAGTCT+TGG - Chr1:11863975-11863994 MsG0180000835.01.T01:intron 40.0%
GAGAAGTTGTATGAAGAGCT+TGG - Chr1:11863629-11863648 MsG0180000835.01.T01:intron 40.0%
GAGATATTAGTCACCTGCAT+AGG + Chr1:11864191-11864210 None:intergenic 40.0%
GAGGAGAATCAGGTTAAAAG+AGG - Chr1:11862151-11862170 MsG0180000835.01.T01:intron 40.0%
GATGAAGCGAAGTTTGAACA+GGG - Chr1:11863683-11863702 MsG0180000835.01.T01:intron 40.0%
GATGTTATGTCAGCTGATGA+CGG - Chr1:11863933-11863952 MsG0180000835.01.T01:intron 40.0%
GCTGGGAAACATATTCAGTT+TGG - Chr1:11859202-11859221 MsG0180000835.01.T01:three_prime_UTR 40.0%
GGAAAATTGATCCCACTACA+AGG + Chr1:11864089-11864108 None:intergenic 40.0%
GGATTTAGAGGTCAATGAGT+TGG - Chr1:11862212-11862231 MsG0180000835.01.T01:intron 40.0%
GGGAATAGTGTTAGTGAAGA+TGG - Chr1:11859223-11859242 MsG0180000835.01.T01:three_prime_UTR 40.0%
GTACCAACACTTCAGATTCA+AGG + Chr1:11860813-11860832 None:intergenic 40.0%
GTACTTTACGCGTAGATATG+TGG + Chr1:11861100-11861119 None:intergenic 40.0%
TAGCCTATTGTGGACAACTA+GGG + Chr1:11864372-11864391 None:intergenic 40.0%
TATTCCAAGCAGCATTGTTG+GGG + Chr1:11863171-11863190 None:intergenic 40.0%
TCGGGTTAAAATCATTACCC+AGG + Chr1:11861048-11861067 None:intergenic 40.0%
TGAAGAGCTTGGAAAGAAAG+AGG - Chr1:11863640-11863659 MsG0180000835.01.T01:intron 40.0%
TGACACAACACCAACACATT+TGG + Chr1:11860771-11860790 None:intergenic 40.0%
TGCTTCGTTGCTCTTTATGA+CGG + Chr1:11861003-11861022 None:intergenic 40.0%
TTGACAAGATGCTTATCACG+AGG + Chr1:11861476-11861495 None:intergenic 40.0%
TTTAACCTTTCATCGCTGTC+CGG - Chr1:11858841-11858860 MsG0180000835.01.T01:three_prime_UTR 40.0%
! ACACAGAAATAGGCGTTTTG+TGG - Chr1:11863594-11863613 MsG0180000835.01.T01:intron 40.0%
! ACACCTTGAATCTGAAGTGT+TGG - Chr1:11860807-11860826 MsG0180000835.01.T01:intron 40.0%
! AGAAAGTAAAGATGGTGACG+AGG - Chr1:11863799-11863818 MsG0180000835.01.T01:intron 40.0%
! CAAAACGTGGTCTTTTTGCT+GGG - Chr1:11859185-11859204 MsG0180000835.01.T01:three_prime_UTR 40.0%
! CGAGTTTATCAGTGTTTCTG+CGG + Chr1:11858879-11858898 None:intergenic 40.0%
! GAAAGTAAAGATGGTGACGA+GGG - Chr1:11863800-11863819 MsG0180000835.01.T01:intron 40.0%
! TAGTTTGTGCTTGTTCATGC+TGG + Chr1:11863771-11863790 None:intergenic 40.0%
! TTAGTGAAGATGGTGGTAAC+AGG - Chr1:11859233-11859252 MsG0180000835.01.T01:three_prime_UTR 40.0%
!!! CAGCACTTGGTTTGTTTTCA+TGG - Chr1:11861603-11861622 MsG0180000835.01.T01:intron 40.0%
!!! TTTTTTGGAGTATCCGAGTG+GGG - Chr1:11862901-11862920 MsG0180000835.01.T01:intron 40.0%
ACCAGCGATGTTGTATGGTA+CGG - Chr1:11861845-11861864 MsG0180000835.01.T01:intron 45.0%
AGAGGGAGACCTAGGAAAAT+AGG - Chr1:11862175-11862194 MsG0180000835.01.T01:intron 45.0%
AGTCGGCGTAAGAACTTCAT+AGG + Chr1:11860706-11860725 None:intergenic 45.0%
ATCATTACCCAGGGACATTC+AGG + Chr1:11861038-11861057 None:intergenic 45.0%
ATGCCTATGAGTAGGGAATG+TGG - Chr1:11861503-11861522 MsG0180000835.01.T01:intron 45.0%
ATGTTGTATGGTACGGAGTG+TGG - Chr1:11861852-11861871 MsG0180000835.01.T01:intron 45.0%
CAATGGAGTGGAAATTGCGT+TGG + Chr1:11858938-11858957 None:intergenic 45.0%
CACCAGTCAATGTAAGCAGA+AGG + Chr1:11861685-11861704 None:intergenic 45.0%
CACTGTCCATCTCTATAGGT+AGG - Chr1:11862744-11862763 MsG0180000835.01.T01:intron 45.0%
CCGTCACTCAATAAGTGAAG+TGG + Chr1:11862803-11862822 None:intergenic 45.0%
CGTGCAGTGTTCTCAAATAG+TGG + Chr1:11861358-11861377 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCTAA+TGG + Chr1:11861978-11861997 None:intergenic 45.0%
CTGATAGGACAAGGAGAACA+TGG - Chr1:11863426-11863445 MsG0180000835.01.T01:intron 45.0%
CTTATCGCACAAAACACCTG+AGG + Chr1:11861778-11861797 None:intergenic 45.0%
GAGGGAGCTGCTAAAATTGA+GGG - Chr1:11863818-11863837 MsG0180000835.01.T01:intron 45.0%
GATGAGTGGTAAGACTAGAC+GGG - Chr1:11861934-11861953 MsG0180000835.01.T01:intron 45.0%
GCTATAGCACTGTAGCGTAA+TGG + Chr1:11861250-11861269 None:intergenic 45.0%
GCTATAGCGCTATAATGCAG+CGG + Chr1:11861336-11861355 None:intergenic 45.0%
GGATGAAGCGAAGTTTGAAC+AGG - Chr1:11863682-11863701 MsG0180000835.01.T01:intron 45.0%
GGATGAGTGGTAAGACTAGA+CGG - Chr1:11861933-11861952 MsG0180000835.01.T01:intron 45.0%
GTTCCACATTCCCTACTCAT+AGG + Chr1:11861509-11861528 None:intergenic 45.0%
GTTCCGCACACCATAATCAT+AGG + Chr1:11860361-11860380 None:intergenic 45.0%
TAGAGATGAGGATGTTGTGC+TGG - Chr1:11861912-11861931 MsG0180000835.01.T01:intron 45.0%
TAGTGTTGCCAATCGTGGAT+CGG - Chr1:11861200-11861219 MsG0180000835.01.T01:intron 45.0%
TCAAACTTCGCTTCATCCTC+CGG + Chr1:11863680-11863699 None:intergenic 45.0%
TCTTCTTACGACGGCATCTA+CGG + Chr1:11862119-11862138 None:intergenic 45.0%
TGCCTTCTGCTTACATTGAC+TGG - Chr1:11861680-11861699 MsG0180000835.01.T01:intron 45.0%
TGTGACAGACAAGATCATGC+AGG + Chr1:11863203-11863222 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+GGG - Chr1:11861853-11861872 MsG0180000835.01.T01:intron 45.0%
TTAAAACGAGCGGAATGGAG+CGG + Chr1:11858986-11859005 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - Chr1:11861745-11861764 MsG0180000835.01.T01:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG - Chr1:11861759-11861778 MsG0180000835.01.T01:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG + Chr1:11862293-11862312 None:intergenic 45.0%
! AGAGAGAGAGAGAGTGTGTT+GGG - Chr1:11862026-11862045 MsG0180000835.01.T01:intron 45.0%
! ATTTTGTCAGCAGAGGACAC+CGG - Chr1:11860477-11860496 MsG0180000835.01.T01:intron 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG + Chr1:11862294-11862313 None:intergenic 45.0%
! GCAAAACGTGGTCTTTTTGC+TGG - Chr1:11859184-11859203 MsG0180000835.01.T01:three_prime_UTR 45.0%
! GGTTGTATTCTTTTCACCGG+AGG - Chr1:11863661-11863680 MsG0180000835.01.T01:intron 45.0%
! GTTTATCAGTGTTTCTGCGG+TGG + Chr1:11858876-11858895 None:intergenic 45.0%
! TTTTTCCGGACAGCGATGAA+AGG + Chr1:11858849-11858868 None:intergenic 45.0%
!! AAGAAGTGCTCCAAGCTTTG+TGG - Chr1:11860231-11860250 MsG0180000835.01.T01:intron 45.0%
!! AGAAGTGCTCCAAGCTTTGT+GGG - Chr1:11860232-11860251 MsG0180000835.01.T01:intron 45.0%
!! ATGAAGTGTCGGTCCTAAGT+AGG - Chr1:11859896-11859915 MsG0180000835.01.T01:intron 45.0%
!! GAACCTGTTTGCTGGTTTAG+TGG - Chr1:11863252-11863271 MsG0180000835.01.T01:intron 45.0%
!! TGAAGTGTCGGTCCTAAGTA+GGG - Chr1:11859897-11859916 MsG0180000835.01.T01:intron 45.0%
!! TGGACCTTCTGGCTTGTATA+AGG - Chr1:11864279-11864298 MsG0180000835.01.T01:intron 45.0%
!! TTTGGTTTGCCCACAAAGCT+TGG + Chr1:11860244-11860263 None:intergenic 45.0%
!!! GGCAATTGTTTTGGACCTTC+TGG - Chr1:11864268-11864287 MsG0180000835.01.T01:intron 45.0%
AAAGAGGTAGAGGGAGACCT+AGG - Chr1:11862167-11862186 MsG0180000835.01.T01:intron 50.0%
ACGGAAACCTGAATGTCCCT+GGG - Chr1:11861028-11861047 MsG0180000835.01.T01:intron 50.0%
AGAGATCTGCTACGACGCAA+TGG + Chr1:11858955-11858974 None:intergenic 50.0%
AGGATGTTGTGCTGGATGAG+TGG - Chr1:11861920-11861939 MsG0180000835.01.T01:intron 50.0%
AGTGTTGCCAATCGTGGATC+GGG - Chr1:11861201-11861220 MsG0180000835.01.T01:intron 50.0%
CCAAACAGGTACTTACGACC+CGG + Chr1:11861420-11861439 None:intergenic 50.0%
CCACTTAGTGGGAAAAGGCT+TGG - Chr1:11862292-11862311 MsG0180000835.01.T01:intron 50.0%
CGAGGGAGCTGCTAAAATTG+AGG - Chr1:11863817-11863836 MsG0180000835.01.T01:intron 50.0%
CGTATGTGTTAGCTCCTGAC+AGG - Chr1:11863882-11863901 MsG0180000835.01.T01:intron 50.0%
CTCATCGTATTCAAGCTGGG+TGG - Chr1:11861736-11861755 MsG0180000835.01.T01:intron 50.0%
CTTCTTACGACGGCATCTAC+GGG + Chr1:11862118-11862137 None:intergenic 50.0%
GAATATGACTCCACGAGCGA+AGG - Chr1:11859114-11859133 MsG0180000835.01.T01:three_prime_UTR 50.0%
GATCCACGATTGGCAACACT+AGG + Chr1:11861201-11861220 None:intergenic 50.0%
GGAGCTAACACATACGAGAC+AGG + Chr1:11863878-11863897 None:intergenic 50.0%
GTATTTGGGTGCACCTATGC+AGG - Chr1:11864175-11864194 MsG0180000835.01.T01:intron 50.0%
GTCAGACCAGCGATGTTGTA+TGG - Chr1:11861840-11861859 MsG0180000835.01.T01:intron 50.0%
GTGCCCTAGTTGTCCACAAT+AGG - Chr1:11864366-11864385 MsG0180000835.01.T01:five_prime_UTR 50.0%
GTGGTAAGACTAGACGGGAT+AGG - Chr1:11861939-11861958 MsG0180000835.01.T01:intron 50.0%
GTTATGGGTCGTGCAAAACG+TGG - Chr1:11859172-11859191 MsG0180000835.01.T01:three_prime_UTR 50.0%
TCCGTACCATACAACATCGC+TGG + Chr1:11861849-11861868 None:intergenic 50.0%
TCTCCAACTTTGAGCCTGTC+AGG + Chr1:11863899-11863918 None:intergenic 50.0%
TGCCTTGTCGATGCAACGAA+GGG + Chr1:11863528-11863547 None:intergenic 50.0%
TGGCCACTAAACCAGCAAAC+AGG + Chr1:11863258-11863277 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG + Chr1:11862295-11862314 None:intergenic 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG + Chr1:11862289-11862308 None:intergenic 50.0%
! GAGAGAGAGAGAGAGTGTGT+TGG - Chr1:11862025-11862044 MsG0180000835.01.T01:intron 50.0%
! GAGAGAGAGAGAGTGTGTTG+GGG - Chr1:11862027-11862046 MsG0180000835.01.T01:intron 50.0%
! GATTTTCCCCGATCCACGAT+TGG + Chr1:11861211-11861230 None:intergenic 50.0%
!! TCTATCGATTCCTTCGCTCG+TGG + Chr1:11859127-11859146 None:intergenic 50.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr1:11862281-11862300 None:intergenic 55.0%
AGAGCAACGAAGCAGAGCCA+CGG - Chr1:11861009-11861028 MsG0180000835.01.T01:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr1:11862280-11862299 MsG0180000835.01.T01:intron 55.0%
CACGGAAACCTGAATGTCCC+TGG - Chr1:11861027-11861046 MsG0180000835.01.T01:intron 55.0%
CCGGGTCGTAAGTACCTGTT+TGG - Chr1:11861417-11861436 MsG0180000835.01.T01:intron 55.0%
CGACCCCACTTAGTGGGAAA+AGG - Chr1:11862287-11862306 MsG0180000835.01.T01:intron 55.0%
CTGCCTTGTCGATGCAACGA+AGG + Chr1:11863529-11863548 None:intergenic 55.0%
GAGCCTAGTGTTGCCAATCG+TGG - Chr1:11861195-11861214 MsG0180000835.01.T01:intron 55.0%
GCTCCTGACAGGCTCAAAGT+TGG - Chr1:11863893-11863912 MsG0180000835.01.T01:intron 55.0%
GTGTTGCCAATCGTGGATCG+GGG - Chr1:11861202-11861221 MsG0180000835.01.T01:intron 55.0%
TAGCCAGCATCATCCCCACT+CGG + Chr1:11862917-11862936 None:intergenic 55.0%
TATCCGAGTGGGGATGATGC+TGG - Chr1:11862911-11862930 MsG0180000835.01.T01:intron 55.0%
TCGTGGATCGGGGAAAATCG+TGG - Chr1:11861212-11861231 MsG0180000835.01.T01:intron 55.0%
TCTGCTACGACGCAATGGAG+TGG + Chr1:11858950-11858969 None:intergenic 55.0%
TGGACCCCAACAATGCTGCT+TGG - Chr1:11863164-11863183 MsG0180000835.01.T01:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr1:11862281-11862300 MsG0180000835.01.T01:intron 55.0%
! CAGGGACATTCAGGTTTCCG+TGG + Chr1:11861029-11861048 None:intergenic 55.0%
! CTTCGTTGCATCGACAAGGC+AGG - Chr1:11863527-11863546 MsG0180000835.01.T01:intron 55.0%
!!! CACCGGCTCGTTTTCATAGG+CGG - Chr1:11860494-11860513 MsG0180000835.01.T01:intron 55.0%
!!! GGACACCGGCTCGTTTTCAT+AGG - Chr1:11860491-11860510 MsG0180000835.01.T01:intron 55.0%
!!! TCTGCGGTGGACGCTTTTTC+CGG + Chr1:11858863-11858882 None:intergenic 55.0%
GGCCGCCTATGAAAACGAGC+CGG + Chr1:11860499-11860518 None:intergenic 60.0%
! CGCCCTTCGTTGCATCGACA+AGG - Chr1:11863523-11863542 MsG0180000835.01.T01:intron 60.0%
! CGTTGCATCGACAAGGCAGG+CGG - Chr1:11863530-11863549 MsG0180000835.01.T01:intron 60.0%
! GATGCAACGAAGGGCGTGAG+TGG + Chr1:11863519-11863538 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 11858827 11864403 11858827 ID=MsG0180000835.01;Name=MsG0180000835.01
Chr1 mRNA 11858827 11864403 11858827 ID=MsG0180000835.01.T01;Parent=MsG0180000835.01;Name=MsG0180000835.01.T01;_AED=0.44;_eAED=0.44;_QI=88|1|1|1|0|0.33|3|469|232
Chr1 exon 11864327 11864403 11864327 ID=MsG0180000835.01.T01:exon:518;Parent=MsG0180000835.01.T01
Chr1 exon 11863976 11864183 11863976 ID=MsG0180000835.01.T01:exon:519;Parent=MsG0180000835.01.T01
Chr1 exon 11858827 11859797 11858827 ID=MsG0180000835.01.T01:exon:520;Parent=MsG0180000835.01.T01
Chr1 five_prime_UTR 11864327 11864403 11864327 ID=MsG0180000835.01.T01:five_prime_utr;Parent=MsG0180000835.01.T01
Chr1 five_prime_UTR 11864173 11864183 11864173 ID=MsG0180000835.01.T01:five_prime_utr;Parent=MsG0180000835.01.T01
Chr1 CDS 11863976 11864172 11863976 ID=MsG0180000835.01.T01:cds;Parent=MsG0180000835.01.T01
Chr1 CDS 11859296 11859797 11859296 ID=MsG0180000835.01.T01:cds;Parent=MsG0180000835.01.T01
Chr1 three_prime_UTR 11858827 11859295 11858827 ID=MsG0180000835.01.T01:three_prime_utr;Parent=MsG0180000835.01.T01
Gene Sequence

>MsG0180000835.01.T01

ATGGCGTTTAGAGGAAAAGAGATGATGAAGAAAGTGCTGAAAAAGGTTGGAGACAAGAATATGACTCCACGAGCGAAGGAATCGATAGAGAAATGGCTTCCCAAAAGCAAAGTTGTTATGGGTCGTGCAAAACGTGGTCTTTTTGCTGGGAAACATATTCAGTTTGGGAATAGTGTTAGTGAAGATGGTGGTAACAGGACAAGGAGAACATGGAAACCTAACGTACAAGATAAGAGGCTCTTTAGTTATATCCTAGATCGTCACATTCGTATTAAAGTCACCACTCACGCCCTTCGTTGCATCGACAAGGCAGGCGGAATTGATGAGTACTTGCTGAAGACTCCTTATCAAAAGATGGACACAGAAATAGGCGTTTTGTGGAAGTCAAAGATTGAGAAGTTGTATGAAGAGCTTGGAAAGAAAGAGGTTGTATTCTTTTCACCGGAGGATGAAGCGAAGTTTGAACAGGGCTTTAAAGATTTGAGATTAGCTGAAAGGGAAGCACGAAAAGAAGTCAGAAAAATAATGCATGCCAGCATGAACAAGCACAAACTAATTGAGGTAGAAAGTAAAGATGGTGACGAGGGAGCTGCTAAAATTGAGGGAGAAATCTCACTCGATTCATCAAAGCGATTGGTTCCTGTCTCGTATGTGTTAGCTCCTGACAGGCTCAAAGTTGGAGATTATATATCTAATTGA

Protein sequence

>MsG0180000835.01.T01

MAFRGKEMMKKVLKKVGDKNMTPRAKESIEKWLPKSKVVMGRAKRGLFAGKHIQFGNSVSEDGGNRTRRTWKPNVQDKRLFSYILDRHIRIKVTTHALRCIDKAGGIDEYLLKTPYQKMDTEIGVLWKSKIEKLYEELGKKEVVFFSPEDEAKFEQGFKDLRLAEREARKEVRKIMHASMNKHKLIEVESKDGDEGAAKIEGEISLDSSKRLVPVSYVLAPDRLKVGDYISN*