Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022006.01.T01 | XP_004293968.1 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 1.12E-129 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022006.01.T01 | P46287 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 1.77E-132 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022006.01.T01 | A0A0B2QKZ6 | 98.343 | 181 | 3 | 0 | 1 | 181 | 497 | 677 | 1.17e-122 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048040.01 | MsG0480022006.01 | 0.831467 | 1.642014e-55 | 1.783484e-52 |
| MsG0080048922.01 | MsG0480022006.01 | 0.833837 | 4.238755e-56 | 4.940782e-53 |
| MsG0180000096.01 | MsG0480022006.01 | 0.925708 | 1.271057e-90 | 5.752609e-86 |
| MsG0180000118.01 | MsG0480022006.01 | 0.906162 | 1.992398e-80 | 3.331990e-76 |
| MsG0180001169.01 | MsG0480022006.01 | 0.906056 | 2.229859e-80 | 3.712576e-76 |
| MsG0180001829.01 | MsG0480022006.01 | 0.890444 | 9.802152e-74 | 8.242041e-70 |
| MsG0180001837.01 | MsG0480022006.01 | 0.827577 | 1.449153e-54 | 1.404544e-51 |
| MsG0180002738.01 | MsG0480022006.01 | 0.811328 | 7.395547e-51 | 4.564371e-48 |
| MsG0180003258.01 | MsG0480022006.01 | 0.833049 | 6.666423e-56 | 7.589095e-53 |
| MsG0180003585.01 | MsG0480022006.01 | 0.841390 | 4.891196e-58 | 7.176444e-55 |
| MsG0180003897.01 | MsG0480022006.01 | 0.896400 | 3.827379e-76 | 4.133765e-72 |
| MsG0180004064.01 | MsG0480022006.01 | 0.869212 | 3.667795e-66 | 1.365259e-62 |
| MsG0180004503.01 | MsG0480022006.01 | 0.864098 | 1.552019e-64 | 4.815215e-61 |
| MsG0180004829.01 | MsG0480022006.01 | 0.860731 | 1.684132e-63 | 4.650155e-60 |
| MsG0180005384.01 | MsG0480022006.01 | 0.930640 | 1.219053e-93 | 7.328198e-89 |
| MsG0180005573.01 | MsG0480022006.01 | 0.840451 | 8.628777e-58 | 1.229621e-54 |
| MsG0280006301.01 | MsG0480022006.01 | 0.903411 | 3.566968e-79 | 5.274552e-75 |
| MsG0380014507.01 | MsG0480022006.01 | 0.800977 | 1.118898e-48 | 5.281946e-46 |
| MsG0480019165.01 | MsG0480022006.01 | 0.860903 | 1.492750e-63 | 4.146035e-60 |
| MsG0480019632.01 | MsG0480022006.01 | 0.804773 | 1.839184e-49 | 9.565402e-47 |
| MsG0480020796.01 | MsG0480022006.01 | 0.897522 | 1.296304e-76 | 1.470218e-72 |
| MsG0480020911.01 | MsG0480022006.01 | 0.898971 | 3.141750e-77 | 3.803690e-73 |
| MsG0480021279.01 | MsG0480022006.01 | 0.908221 | 2.166789e-81 | 3.982273e-77 |
| MsG0480021288.01 | MsG0480022006.01 | 0.844637 | 6.682248e-59 | 1.085542e-55 |
| MsG0480021293.01 | MsG0480022006.01 | 0.801940 | 7.101857e-49 | 3.434912e-46 |
| MsG0480021417.01 | MsG0480022006.01 | 0.896368 | 3.944722e-76 | 4.253812e-72 |
| MsG0480022006.01 | MsG0480022302.01 | 0.824697 | 7.012398e-54 | 6.258643e-51 |
| MsG0480022006.01 | MsG0480022363.01 | 0.842347 | 2.732731e-58 | 4.131884e-55 |
| MsG0480022006.01 | MsG0480022789.01 | 0.812553 | 4.002112e-51 | 2.552366e-48 |
| MsG0480022006.01 | MsG0480022955.01 | 0.907628 | 4.127690e-81 | 7.384714e-77 |
| MsG0480022006.01 | MsG0480023380.01 | 0.916914 | 1.003448e-85 | 2.822741e-81 |
| MsG0480022006.01 | MsG0480023774.01 | 0.945224 | 4.555876e-104 | 6.875049e-99 |
| MsG0480022006.01 | MsG0480023931.01 | 0.877602 | 5.507030e-69 | 2.785153e-65 |
| MsG0480022006.01 | MsG0480023941.01 | 0.860231 | 2.386674e-63 | 6.477384e-60 |
| MsG0480022006.01 | MsG0480023996.01 | 0.886820 | 2.451203e-72 | 1.778057e-68 |
| MsG0480022006.01 | MsG0580024059.01 | 0.846675 | 1.871375e-59 | 3.246151e-56 |
| MsG0480022006.01 | MsG0580024481.01 | 0.862004 | 6.888103e-64 | 1.986536e-60 |
| MsG0480022006.01 | MsG0580024540.01 | 0.869340 | 3.331677e-66 | 1.246019e-62 |
| MsG0480022006.01 | MsG0580024738.01 | 0.914511 | 1.760309e-84 | 4.389167e-80 |
| MsG0480022006.01 | MsG0580024894.01 | 0.890242 | 1.175863e-73 | 9.807670e-70 |
| MsG0480022006.01 | MsG0580025750.01 | 0.824174 | 9.309376e-54 | 8.184202e-51 |
| MsG0480022006.01 | MsG0580026029.01 | 0.807631 | 4.600686e-50 | 2.575331e-47 |
| MsG0480022006.01 | MsG0580026749.01 | 0.835291 | 1.828194e-56 | 2.226010e-53 |
| MsG0480022006.01 | MsG0680031368.01 | 0.893738 | 4.750297e-75 | 4.584977e-71 |
| MsG0480022006.01 | MsG0680032459.01 | 0.857829 | 1.250324e-62 | 3.126522e-59 |
| MsG0480022006.01 | MsG0680035611.01 | 0.859479 | 4.021492e-63 | 1.063588e-59 |
| MsG0480022006.01 | MsG0780036015.01 | 0.837812 | 4.167121e-57 | 5.476058e-54 |
| MsG0480022006.01 | MsG0780036859.01 | 0.828539 | 8.500143e-55 | 8.473811e-52 |
| MsG0480022006.01 | MsG0780037290.01 | 0.854346 | 1.308327e-61 | 2.912966e-58 |
| MsG0480022006.01 | MsG0780038383.01 | 0.869164 | 3.801411e-66 | 1.412566e-62 |
| MsG0480022006.01 | MsG0780039937.01 | 0.877389 | 6.533994e-69 | 3.280012e-65 |
| MsG0480022006.01 | MsG0780040174.01 | 0.823204 | 1.571116e-53 | 1.343844e-50 |
| MsG0480022006.01 | MsG0780041240.01 | 0.856030 | 4.236446e-62 | 9.975175e-59 |
| MsG0480022006.01 | MsG0780041244.01 | 0.809520 | 1.817245e-50 | 1.069277e-47 |
| MsG0480022006.01 | MsG0780041311.01 | 0.860009 | 2.784402e-63 | 7.500042e-60 |
| MsG0480022006.01 | MsG0780041522.01 | 0.893479 | 6.050634e-75 | 5.772857e-71 |
| MsG0480022006.01 | MsG0780041790.01 | 0.896725 | 2.800966e-76 | 3.067982e-72 |
| MsG0480022006.01 | MsG0880041941.01 | 0.889946 | 1.535184e-73 | 1.265012e-69 |
| MsG0480022006.01 | MsG0880042517.01 | 0.860223 | 2.399258e-63 | 6.509796e-60 |
| MsG0480022006.01 | MsG0880042896.01 | 0.806780 | 6.964680e-50 | 3.813476e-47 |
| MsG0480022006.01 | MsG0880043076.01 | 0.883330 | 4.915076e-71 | 3.102107e-67 |
| MsG0480022006.01 | MsG0880044204.01 | 0.893802 | 4.477758e-75 | 4.334724e-71 |
| MsG0480022006.01 | MsG0880045836.01 | 0.896310 | 4.168796e-76 | 4.485695e-72 |
| MsG0480022006.01 | MsG0880046220.01 | 0.867276 | 1.542058e-65 | 5.352326e-62 |
| MsG0480022006.01 | MsG0880046486.01 | 0.867529 | 1.279669e-65 | 4.482103e-62 |
| MsG0480022006.01 | MsG0880046499.01 | 0.813519 | 2.457349e-51 | 1.608297e-48 |
| MsG0480022006.01 | MsG0880047090.01 | 0.834677 | 2.609546e-56 | 3.118771e-53 |
| MsG0480022006.01 | MsG0880047310.01 | 0.867712 | 1.118300e-65 | 3.941965e-62 |
| MsG0380015402.01 | MsG0480022006.01 | 0.838954 | 2.115889e-57 | 2.878779e-54 |
| MsG0380015446.01 | MsG0480022006.01 | 0.846245 | 2.450895e-59 | 4.191990e-56 |
| MsG0380015766.01 | MsG0480022006.01 | 0.854523 | 1.163395e-61 | 2.605630e-58 |
| MsG0380015857.01 | MsG0480022006.01 | 0.957061 | 6.710408e-115 | 2.268483e-109 |
| MsG0380016031.01 | MsG0480022006.01 | 0.805484 | 1.305288e-49 | 6.913922e-47 |
| MsG0380016607.01 | MsG0480022006.01 | 0.820797 | 5.673179e-53 | 4.533829e-50 |
| MsG0380016653.01 | MsG0480022006.01 | 0.874586 | 6.016565e-68 | 2.723096e-64 |
| MsG0380016678.01 | MsG0480022006.01 | 0.855650 | 5.472190e-62 | 1.272319e-58 |
| MsG0380016732.01 | MsG0480022006.01 | 0.851837 | 6.839318e-61 | 1.402036e-57 |
| MsG0380016744.01 | MsG0480022006.01 | 0.904951 | 7.167887e-80 | 1.134215e-75 |
| MsG0380016760.01 | MsG0480022006.01 | 0.929988 | 3.146526e-93 | 1.812946e-88 |
| MsG0380016805.01 | MsG0480022006.01 | 0.804435 | 2.162960e-49 | 1.115125e-46 |
| MsG0380017119.01 | MsG0480022006.01 | 0.801910 | 7.204137e-49 | 3.481843e-46 |
| MsG0380017155.01 | MsG0480022006.01 | 0.840404 | 8.874322e-58 | 1.262815e-54 |
| MsG0380017516.01 | MsG0480022006.01 | 0.862999 | 3.403970e-64 | 1.016357e-60 |
| MsG0380018056.01 | MsG0480022006.01 | 0.834522 | 2.854326e-56 | 3.396129e-53 |
| MsG0480018164.01 | MsG0480022006.01 | 0.911478 | 5.812991e-83 | 1.247815e-78 |
| MsG0280006629.01 | MsG0480022006.01 | 0.870171 | 1.784398e-66 | 6.875289e-63 |
| MsG0280006717.01 | MsG0480022006.01 | 0.836069 | 1.161265e-56 | 1.447297e-53 |
| MsG0280006747.01 | MsG0480022006.01 | 0.907800 | 3.423660e-81 | 6.170626e-77 |
| MsG0280006760.01 | MsG0480022006.01 | 0.801881 | 7.303521e-49 | 3.527403e-46 |
| MsG0280007055.01 | MsG0480022006.01 | 0.930903 | 8.305086e-94 | 5.075992e-89 |
| MsG0280007084.01 | MsG0480022006.01 | 0.876216 | 1.666161e-68 | 8.011303e-65 |
| MsG0280007606.01 | MsG0480022006.01 | 0.855427 | 6.355692e-62 | 1.466897e-58 |
| MsG0280007995.01 | MsG0480022006.01 | 0.838315 | 3.094119e-57 | 4.128217e-54 |
| MsG0280010232.01 | MsG0480022006.01 | 0.816949 | 4.247191e-52 | 3.052168e-49 |
| MsG0280010519.01 | MsG0480022006.01 | 0.839894 | 1.205776e-57 | 1.688709e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0280009999.01 | MsG0480022006.01 | PPI |
| MsG0780039623.01 | MsG0480022006.01 | PPI |
| MsG0880044003.01 | MsG0480022006.01 | PPI |
| MsG0880047038.01 | MsG0480022006.01 | PPI |
| MsG0580024916.01 | MsG0480022006.01 | PPI |
| MsG0180003409.01 | MsG0480022006.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022006.01.T01 | MTR_8g046140 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.50e-132 | 369 |
| MsG0480022006.01.T01 | MTR_4g080740 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.85e-132 | 368 |
| MsG0480022006.01.T01 | MTR_3g007700 | 99.441 | 179 | 1 | 0 | 3 | 181 | 4 | 182 | 4.00e-132 | 367 |
| MsG0480022006.01.T01 | MTR_3g007690 | 80.663 | 181 | 33 | 2 | 2 | 180 | 61 | 241 | 1.70e-101 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022006.01.T01 | AT2G42740 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 5.13e-129 | 360 |
| MsG0480022006.01.T01 | AT5G45775 | 95.028 | 181 | 9 | 0 | 1 | 181 | 1 | 181 | 2.23e-128 | 358 |
| MsG0480022006.01.T01 | AT4G18730 | 95.028 | 181 | 9 | 0 | 1 | 181 | 1 | 181 | 2.23e-128 | 358 |
| MsG0480022006.01.T01 | AT3G58700 | 95.028 | 181 | 9 | 0 | 1 | 181 | 1 | 181 | 2.23e-128 | 358 |
| MsG0480022006.01.T01 | AT5G45775 | 95.322 | 171 | 8 | 0 | 11 | 181 | 1 | 171 | 9.70e-121 | 338 |
Find 64 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTATTAGTCAGATTT+TGG | 0.109315 | 4:-66987837 | MsG0480022006.01.T01:three_prime_UTR |
| GACCCTTCTACTGGTATTTA+TGG | 0.148591 | 4:-66988099 | MsG0480022006.01.T01:CDS |
| AATGGATTTCTTTGTTGTTC+TGG | 0.273830 | 4:-66988076 | MsG0480022006.01.T01:CDS |
| TTGCTTTGGATTTGGTATTC+AGG | 0.280202 | 4:-66988592 | MsG0480022006.01.T01:CDS |
| TTCAGTGATACTGGTTGCTT+TGG | 0.301811 | 4:-66988606 | MsG0480022006.01.T01:CDS |
| TATTCAGGAGCATATTGATT+TGG | 0.317273 | 4:-66988577 | MsG0480022006.01.T01:CDS |
| TGACAAGGCAATGCAGCTTT+TGG | 0.318529 | 4:-66988673 | MsG0480022006.01.T01:CDS |
| TGAACCTTGATCTCCCTCAT+TGG | 0.332362 | 4:+66989613 | None:intergenic |
| ATTCAGGAGCATATTGATTT+GGG | 0.344346 | 4:-66988576 | MsG0480022006.01.T01:CDS |
| AGGAGGAACTTCAGTGATAC+TGG | 0.352064 | 4:-66988615 | MsG0480022006.01.T01:CDS |
| GAACCTTGATCTCCCTCATT+GGG | 0.354507 | 4:+66989614 | None:intergenic |
| ATTCCATAAATACCAGTAGA+AGG | 0.360196 | 4:+66988096 | None:intergenic |
| CAATTGCCTGGGATTTGTTA+AGG | 0.361161 | 4:+66987935 | None:intergenic |
| GATACTGGTTGCTTTGGATT+TGG | 0.362752 | 4:-66988600 | MsG0480022006.01.T01:CDS |
| TTTGACCTGGAACCACTTCA+TGG | 0.374960 | 4:+66987972 | None:intergenic |
| TGATGCCATGAAGTGGTTCC+AGG | 0.388963 | 4:-66987977 | MsG0480022006.01.T01:CDS |
| TGGGTTCGCCAGTTTCTTCT+CGG | 0.418287 | 4:+66989633 | None:intergenic |
| AGGTACACTGTGCGATCCTT+TGG | 0.421779 | 4:-66988741 | MsG0480022006.01.T01:CDS |
| CCGCAGCCGCAACACATCAA+TGG | 0.425249 | 4:-66989659 | MsG0480022006.01.T01:exon |
| CAACACGGGCCTTGCATCTA+CGG | 0.426608 | 4:+66988025 | None:intergenic |
| GGAGAGTGGTTTAAAGGTGA+AGG | 0.433325 | 4:-66988652 | MsG0480022006.01.T01:CDS |
| GGAGTATTTAACACAGCTAT+AGG | 0.434952 | 4:+66987761 | None:intergenic |
| ATTTCGAGTCAATAATATAA+CGG | 0.441402 | 4:+66987694 | None:intergenic |
| AATGGCTTCCGAGAAGAAAC+TGG | 0.445897 | 4:-66989641 | MsG0480022006.01.T01:CDS |
| TTCTACTGGTATTTATGGAA+TGG | 0.448616 | 4:-66988094 | MsG0480022006.01.T01:CDS |
| AACTATAGTCTGGTCTCTCT+TGG | 0.455652 | 4:-66987867 | MsG0480022006.01.T01:three_prime_UTR |
| CTCATTTCTTCTGATTCCAA+AGG | 0.457634 | 4:+66988725 | None:intergenic |
| CCATTGATGTGTTGCGGCTG+CGG | 0.462739 | 4:+66989659 | None:intergenic |
| AGTTTAACTAAACAATTGCC+TGG | 0.470565 | 4:+66987923 | None:intergenic |
| TTTGTTGTTCTGGAACGTCC+TGG | 0.481018 | 4:-66988066 | MsG0480022006.01.T01:CDS |
| TCCAGGTATGACCCTTCTAC+TGG | 0.482968 | 4:-66988108 | MsG0480022006.01.T01:intron |
| GCTGCGGCGGCAGAGATGAA+TGG | 0.490912 | 4:+66989675 | None:intergenic |
| CGACGACCCACACGATAACC+AGG | 0.522163 | 4:+66988048 | None:intergenic |
| GTGGTTCCAGGTCAAATATG+AGG | 0.522922 | 4:-66987965 | MsG0480022006.01.T01:CDS |
| AACATCTCCGTCGGTGAGAG+TGG | 0.528749 | 4:-66989577 | MsG0480022006.01.T01:CDS |
| GAACGTCCTGGTTATCGTGT+GGG | 0.532113 | 4:-66988054 | MsG0480022006.01.T01:CDS |
| GAACCCAATGAGGGAGATCA+AGG | 0.532538 | 4:-66989617 | MsG0480022006.01.T01:CDS |
| TAGGTGCTGGAACAACTTAG+TGG | 0.535243 | 4:-66989436 | MsG0480022006.01.T01:CDS |
| AACTAACCTTTGGAGAACAC+TGG | 0.544806 | 4:+66989406 | None:intergenic |
| GGAACGTCCTGGTTATCGTG+TGG | 0.550259 | 4:-66988055 | MsG0480022006.01.T01:CDS |
| GTTTAACTAAACAATTGCCT+GGG | 0.556618 | 4:+66987924 | None:intergenic |
| TCGTCTCACCAGAGCTGCAA+AGG | 0.558754 | 4:-66989551 | MsG0480022006.01.T01:intron |
| ACTAACCTTTGGAGAACACT+GGG | 0.563850 | 4:+66989407 | None:intergenic |
| TGGCATCATCCTTCGTGACA+CGG | 0.570122 | 4:+66987992 | None:intergenic |
| CGGAAGCCATTGATGTGTTG+CGG | 0.571620 | 4:+66989653 | None:intergenic |
| GGGTCGTCGCCGTAGATGCA+AGG | 0.575968 | 4:-66988034 | MsG0480022006.01.T01:CDS |
| TTGATGTGTTGCGGCTGCGG+CGG | 0.581033 | 4:+66989662 | None:intergenic |
| CGTAGATGCAAGGCCCGTGT+TGG | 0.590250 | 4:-66988024 | MsG0480022006.01.T01:CDS |
| CTCGTTCTCAACATCTCCGT+CGG | 0.591586 | 4:-66989586 | MsG0480022006.01.T01:CDS |
| TTCCATAAATACCAGTAGAA+GGG | 0.597500 | 4:+66988097 | None:intergenic |
| CACGGTGTTGAATTCCAACA+CGG | 0.601715 | 4:+66988010 | None:intergenic |
| CGAAGGATGATGCCATGAAG+TGG | 0.606576 | 4:-66987984 | MsG0480022006.01.T01:CDS |
| AGTGATCCTTAACAAATCCC+AGG | 0.615373 | 4:-66987941 | MsG0480022006.01.T01:CDS |
| TGTTACTGTCAGAGGTGACA+AGG | 0.617824 | 4:-66988688 | MsG0480022006.01.T01:CDS |
| TCACTCCCTCATATTTGACC+TGG | 0.621443 | 4:+66987959 | None:intergenic |
| TGGTTCCAGGTCAAATATGA+GGG | 0.622773 | 4:-66987964 | MsG0480022006.01.T01:CDS |
| GCATGCTATGTTACTGTCAG+AGG | 0.636257 | 4:-66988696 | MsG0480022006.01.T01:CDS |
| CAAACCCCAGTGTTCTCCAA+AGG | 0.636410 | 4:-66989412 | MsG0480022006.01.T01:intron |
| GAAACTGGCGAACCCAATGA+GGG | 0.640398 | 4:-66989626 | MsG0480022006.01.T01:CDS |
| ACGATCTCCACTCTCACCGA+CGG | 0.655877 | 4:+66989570 | None:intergenic |
| AGAAACTGGCGAACCCAATG+AGG | 0.672801 | 4:-66989627 | MsG0480022006.01.T01:CDS |
| ACGGTGTTGAATTCCAACAC+GGG | 0.675200 | 4:+66988011 | None:intergenic |
| AATTCAACACCGTGTCACGA+AGG | 0.700404 | 4:-66988001 | MsG0480022006.01.T01:CDS |
| CTAACCTTTGGAGAACACTG+GGG | 0.723201 | 4:+66989408 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATTGAAACATTAT+TGG | - | Chr4:66989218-66989237 | MsG0480022006.01.T01:intron | 10.0% |
| !! | TATTATATAATCTTATAAAC+TGG | - | Chr4:66988544-66988563 | MsG0480022006.01.T01:intron | 10.0% |
| !!! | AATTACATGTTTATTTTTAT+AGG | - | Chr4:66988055-66988074 | MsG0480022006.01.T01:CDS | 10.0% |
| !!! | ACAAATATTTTCTATTAATT+TGG | + | Chr4:66988951-66988970 | None:intergenic | 10.0% |
| !!! | ATAAACTTTATTATCAATTT+TGG | - | Chr4:66988081-66988100 | MsG0480022006.01.T01:CDS | 10.0% |
| !!! | TAAACTTTATTATCAATTTT+GGG | - | Chr4:66988082-66988101 | MsG0480022006.01.T01:CDS | 10.0% |
| !! | AAAATAAATCCAAAAAAGAA+AGG | + | Chr4:66989156-66989175 | None:intergenic | 15.0% |
| !!! | ATAATAAAGTTTGCTTTATA+TGG | - | Chr4:66989007-66989026 | MsG0480022006.01.T01:intron | 15.0% |
| !!! | ATATATTTTTTTTGTGTTGT+AGG | - | Chr4:66987916-66987935 | MsG0480022006.01.T01:exon | 15.0% |
| !! | AAAGAAATGAAAGATGTTTA+CGG | - | Chr4:66988415-66988434 | MsG0480022006.01.T01:intron | 20.0% |
| !! | AAATTGCAAAAACAGATAAT+TGG | + | Chr4:66989102-66989121 | None:intergenic | 20.0% |
| !! | CATATAATATTGGATAAATG+TGG | - | Chr4:66988571-66988590 | MsG0480022006.01.T01:CDS | 20.0% |
| !! | TATGAAATCAAACATTTATG+AGG | + | Chr4:66989186-66989205 | None:intergenic | 20.0% |
| !! | TCAGACAAAAAAATTAACTT+GGG | - | Chr4:66988156-66988175 | MsG0480022006.01.T01:intron | 20.0% |
| !! | TTCAGACAAAAAAATTAACT+TGG | - | Chr4:66988155-66988174 | MsG0480022006.01.T01:intron | 20.0% |
| !!! | AAATTGTTGACTTGTTTTAA+TGG | + | Chr4:66989657-66989676 | None:intergenic | 20.0% |
| !!! | CTTAATTATTAGTCAGATTT+TGG | - | Chr4:66989534-66989553 | MsG0480022006.01.T01:intron | 20.0% |
| !!! | TAGTTTGATTTTGTAGTTAT+TGG | - | Chr4:66988283-66988302 | MsG0480022006.01.T01:intron | 20.0% |
| !!! | TCTAATTTAGGGTTAATTAT+GGG | - | Chr4:66988192-66988211 | MsG0480022006.01.T01:intron | 20.0% |
| !!! | TTTTGTAGAAATTTATCACT+GGG | - | Chr4:66987986-66988005 | MsG0480022006.01.T01:CDS | 20.0% |
| ! | AACTGGCTATCATATAATAT+TGG | - | Chr4:66988561-66988580 | MsG0480022006.01.T01:intron | 25.0% |
| ! | ATTTCTACAAAACTAACCTT+TGG | + | Chr4:66987978-66987997 | None:intergenic | 25.0% |
| ! | TTGGTATGTAGTCTAATTTA+GGG | - | Chr4:66988181-66988200 | MsG0480022006.01.T01:intron | 25.0% |
| ! | TTTATTATTCCTTGCTTTGT+TGG | - | Chr4:66988979-66988998 | MsG0480022006.01.T01:intron | 25.0% |
| !! | AATGTGAAAGCTTGATAATA+GGG | - | Chr4:66988251-66988270 | MsG0480022006.01.T01:intron | 25.0% |
| !! | CAGACAAAAAAATTAACTTG+GGG | - | Chr4:66988157-66988176 | MsG0480022006.01.T01:intron | 25.0% |
| !! | GTCTAATTTAGGGTTAATTA+TGG | - | Chr4:66988191-66988210 | MsG0480022006.01.T01:intron | 25.0% |
| !! | GTTTTGTAGAAATTTATCAC+TGG | - | Chr4:66987985-66988004 | MsG0480022006.01.T01:CDS | 25.0% |
| !! | TAGGATTATGTTACTGTTTT+TGG | - | Chr4:66989480-66989499 | MsG0480022006.01.T01:intron | 25.0% |
| !! | TAGTTAAACTGAGTTCTTTT+AGG | - | Chr4:66989461-66989480 | MsG0480022006.01.T01:intron | 25.0% |
| !!! | GTACATTAGATTTTTTAGCA+TGG | + | Chr4:66988501-66988520 | None:intergenic | 25.0% |
| !!! | TAGTTATTGGTAATGATGAA+AGG | - | Chr4:66988296-66988315 | MsG0480022006.01.T01:intron | 25.0% |
| AAATCCAAAAAAGAAAGGCA+TGG | + | Chr4:66989151-66989170 | None:intergenic | 30.0% | |
| AAATTGTGGTAAGGTTGTTA+CGG | - | Chr4:66988335-66988354 | MsG0480022006.01.T01:intron | 30.0% | |
| AGGTTCAAAAAACTTAGCAT+AGG | + | Chr4:66989634-66989653 | None:intergenic | 30.0% | |
| AGTTTAACTAAACAATTGCC+TGG | + | Chr4:66989451-66989470 | None:intergenic | 30.0% | |
| ATTCCATAAATACCAGTAGA+AGG | + | Chr4:66989278-66989297 | None:intergenic | 30.0% | |
| CATTACACTTTCAAATCACT+AGG | + | Chr4:66988132-66988151 | None:intergenic | 30.0% | |
| CTTGGTATGTAGTCTAATTT+AGG | - | Chr4:66988180-66988199 | MsG0480022006.01.T01:intron | 30.0% | |
| GTTTAACTAAACAATTGCCT+GGG | + | Chr4:66989450-66989469 | None:intergenic | 30.0% | |
| TGAACTTGTGACTAAAATTG+TGG | - | Chr4:66988321-66988340 | MsG0480022006.01.T01:intron | 30.0% | |
| TTCCATAAATACCAGTAGAA+GGG | + | Chr4:66989277-66989296 | None:intergenic | 30.0% | |
| TTCTACTGGTATTTATGGAA+TGG | - | Chr4:66989277-66989296 | MsG0480022006.01.T01:intron | 30.0% | |
| TTGTGACTAAAATTGTGGTA+AGG | - | Chr4:66988326-66988345 | MsG0480022006.01.T01:intron | 30.0% | |
| ! | AAAAAAATTAACTTGGGGCT+TGG | - | Chr4:66988162-66988181 | MsG0480022006.01.T01:intron | 30.0% |
| ! | CAATGTGAAAGCTTGATAAT+AGG | - | Chr4:66988250-66988269 | MsG0480022006.01.T01:intron | 30.0% |
| ! | CATTTCTTTTCTTACATGTG+TGG | + | Chr4:66988404-66988423 | None:intergenic | 30.0% |
| ! | CTGTCAGAGATTAACATTTT+AGG | - | Chr4:66988870-66988889 | MsG0480022006.01.T01:intron | 30.0% |
| ! | TATTCAGGAGCATATTGATT+TGG | - | Chr4:66988794-66988813 | MsG0480022006.01.T01:intron | 30.0% |
| ! | TGTTTTATGATGAAGCACAT+GGG | - | Chr4:66989584-66989603 | MsG0480022006.01.T01:CDS | 30.0% |
| !! | AATGGATTTCTTTGTTGTTC+TGG | - | Chr4:66989295-66989314 | MsG0480022006.01.T01:intron | 30.0% |
| !! | ATTCAGGAGCATATTGATTT+GGG | - | Chr4:66988795-66988814 | MsG0480022006.01.T01:intron | 30.0% |
| !! | TTGTTTTATGATGAAGCACA+TGG | - | Chr4:66989583-66989602 | MsG0480022006.01.T01:CDS | 30.0% |
| !!! | GATTTTTTAGCATGGAAACT+AGG | + | Chr4:66988493-66988512 | None:intergenic | 30.0% |
| !!! | TTGTTGACTTGTTTTAATGG+AGG | + | Chr4:66989654-66989673 | None:intergenic | 30.0% |
| AATTGTGGTAAGGTTGTTAC+GGG | - | Chr4:66988336-66988355 | MsG0480022006.01.T01:intron | 35.0% | |
| ACCTCGCTGTAAAAATTCAA+AGG | + | Chr4:66988614-66988633 | None:intergenic | 35.0% | |
| CTCATTTCTTCTGATTCCAA+AGG | + | Chr4:66988649-66988668 | None:intergenic | 35.0% | |
| GTAAGCTTAAGAACAACTCT+TGG | - | Chr4:66988824-66988843 | MsG0480022006.01.T01:intron | 35.0% | |
| TGACATAGATTGTGTACTTG+TGG | - | Chr4:66988910-66988929 | MsG0480022006.01.T01:intron | 35.0% | |
| TTATATGCACCAACAAAGCA+AGG | + | Chr4:66988991-66989010 | None:intergenic | 35.0% | |
| ! | CAGAGATTAACATTTTAGGC+AGG | - | Chr4:66988874-66988893 | MsG0480022006.01.T01:intron | 35.0% |
| ! | GGAGTATTTAACACAGCTAT+AGG | + | Chr4:66989613-66989632 | None:intergenic | 35.0% |
| ! | GGTAATGAGTGTGGATTTTA+GGG | - | Chr4:66988024-66988043 | MsG0480022006.01.T01:CDS | 35.0% |
| ! | GTTTGCTTTATATGGTCTTG+AGG | - | Chr4:66989015-66989034 | MsG0480022006.01.T01:intron | 35.0% |
| ! | TCCTTTGAATTTTTACAGCG+AGG | - | Chr4:66988610-66988629 | MsG0480022006.01.T01:CDS | 35.0% |
| ! | TTATATGGTCTTGAGGAACA+AGG | - | Chr4:66989022-66989041 | MsG0480022006.01.T01:intron | 35.0% |
| ! | TTGCTTTGGATTTGGTATTC+AGG | - | Chr4:66988779-66988798 | MsG0480022006.01.T01:intron | 35.0% |
| !! | TGAAGGAGTATGAACTTTTG+AGG | - | Chr4:66988736-66988755 | MsG0480022006.01.T01:CDS | 35.0% |
| !! | TGGTAATGAGTGTGGATTTT+AGG | - | Chr4:66988023-66988042 | MsG0480022006.01.T01:CDS | 35.0% |
| !!! | TGTTTTTGGCAACTATAGTC+TGG | - | Chr4:66989494-66989513 | MsG0480022006.01.T01:intron | 35.0% |
| !!! | TTTTTTTGTGTTGTAGGTGC+TGG | - | Chr4:66987922-66987941 | MsG0480022006.01.T01:exon | 35.0% |
| AACTATAGTCTGGTCTCTCT+TGG | - | Chr4:66989504-66989523 | MsG0480022006.01.T01:intron | 40.0% | |
| ACTGGGTTCTTATGTAATGC+TGG | - | Chr4:66988003-66988022 | MsG0480022006.01.T01:CDS | 40.0% | |
| AGTGATCCTTAACAAATCCC+AGG | - | Chr4:66989430-66989449 | MsG0480022006.01.T01:CDS | 40.0% | |
| GACCCTTCTACTGGTATTTA+TGG | - | Chr4:66989272-66989291 | MsG0480022006.01.T01:intron | 40.0% | |
| TGGTTCCAGGTCAAATATGA+GGG | - | Chr4:66989407-66989426 | MsG0480022006.01.T01:intron | 40.0% | |
| ! | AACTAACCTTTGGAGAACAC+TGG | + | Chr4:66987968-66987987 | None:intergenic | 40.0% |
| ! | ACTAACCTTTGGAGAACACT+GGG | + | Chr4:66987967-66987986 | None:intergenic | 40.0% |
| ! | GATACTGGTTGCTTTGGATT+TGG | - | Chr4:66988771-66988790 | MsG0480022006.01.T01:intron | 40.0% |
| ! | TGTAATGCTGGTAATGAGTG+TGG | - | Chr4:66988015-66988034 | MsG0480022006.01.T01:CDS | 40.0% |
| ! | TGTGGTGTACTTGAGCATTT+TGG | - | Chr4:66988447-66988466 | MsG0480022006.01.T01:intron | 40.0% |
| ! | TTCAGTGATACTGGTTGCTT+TGG | - | Chr4:66988765-66988784 | MsG0480022006.01.T01:intron | 40.0% |
| !! | AGGAGTATGAACTTTTGAGG+AGG | - | Chr4:66988739-66988758 | MsG0480022006.01.T01:CDS | 40.0% |
| !! | CAATTGCCTGGGATTTGTTA+AGG | + | Chr4:66989439-66989458 | None:intergenic | 40.0% |
| !! | GCTTTTGGAGAGTGGTTTAA+AGG | - | Chr4:66988713-66988732 | MsG0480022006.01.T01:CDS | 40.0% |
| !!! | ACTGCCATGCCTTTCTTTTT+TGG | - | Chr4:66989144-66989163 | MsG0480022006.01.T01:intron | 40.0% |
| AACAAGGACTTGTGTAGGCT+AGG | - | Chr4:66989038-66989057 | MsG0480022006.01.T01:intron | 45.0% | |
| AACTCAGATCCAGTGAGAAG+AGG | + | Chr4:66987854-66987873 | None:intergenic | 45.0% | |
| AAGGTTGTTACGGGTCTTAG+AGG | - | Chr4:66988345-66988364 | MsG0480022006.01.T01:intron | 45.0% | |
| AATGGCTTCCGAGAAGAAAC+TGG | - | Chr4:66987730-66987749 | MsG0480022006.01.T01:three_prime_UTR | 45.0% | |
| AATTCAACACCGTGTCACGA+AGG | - | Chr4:66989370-66989389 | MsG0480022006.01.T01:intron | 45.0% | |
| ACTCAGATCCAGTGAGAAGA+GGG | + | Chr4:66987853-66987872 | None:intergenic | 45.0% | |
| AGGAGGAACTTCAGTGATAC+TGG | - | Chr4:66988756-66988775 | MsG0480022006.01.T01:intron | 45.0% | |
| GAACCTTGATCTCCCTCATT+GGG | + | Chr4:66987760-66987779 | None:intergenic | 45.0% | |
| GCATGCTATGTTACTGTCAG+AGG | - | Chr4:66988675-66988694 | MsG0480022006.01.T01:CDS | 45.0% | |
| GGAGAGTGGTTTAAAGGTGA+AGG | - | Chr4:66988719-66988738 | MsG0480022006.01.T01:CDS | 45.0% | |
| GGTAAAAACCTTTGCAGCTC+TGG | + | Chr4:66987831-66987850 | None:intergenic | 45.0% | |
| GTGGTTCCAGGTCAAATATG+AGG | - | Chr4:66989406-66989425 | MsG0480022006.01.T01:intron | 45.0% | |
| GTTACGGGTCTTAGAGGAAT+AGG | - | Chr4:66988351-66988370 | MsG0480022006.01.T01:intron | 45.0% | |
| TCACTCCCTCATATTTGACC+TGG | + | Chr4:66989415-66989434 | None:intergenic | 45.0% | |
| TGAACCTTGATCTCCCTCAT+TGG | + | Chr4:66987761-66987780 | None:intergenic | 45.0% | |
| TGAGGAACAAGGACTTGTGT+AGG | - | Chr4:66989033-66989052 | MsG0480022006.01.T01:intron | 45.0% | |
| TGTTACTGTCAGAGGTGACA+AGG | - | Chr4:66988683-66988702 | MsG0480022006.01.T01:CDS | 45.0% | |
| TTTGACCTGGAACCACTTCA+TGG | + | Chr4:66989402-66989421 | None:intergenic | 45.0% | |
| ! | ACGGTGTTGAATTCCAACAC+GGG | + | Chr4:66989363-66989382 | None:intergenic | 45.0% |
| ! | CACGGTGTTGAATTCCAACA+CGG | + | Chr4:66989364-66989383 | None:intergenic | 45.0% |
| ! | CTAACCTTTGGAGAACACTG+GGG | + | Chr4:66987966-66987985 | None:intergenic | 45.0% |
| ! | GTTTTTACCCCTCTTCTCAC+TGG | - | Chr4:66987842-66987861 | MsG0480022006.01.T01:three_prime_UTR | 45.0% |
| ! | TGACAAGGCAATGCAGCTTT+TGG | - | Chr4:66988698-66988717 | MsG0480022006.01.T01:CDS | 45.0% |
| ! | TGTTTACGGTCTTCGACTTG+TGG | - | Chr4:66988429-66988448 | MsG0480022006.01.T01:intron | 45.0% |
| !! | TAGGTGCTGGAACAACTTAG+TGG | - | Chr4:66987935-66987954 | MsG0480022006.01.T01:CDS | 45.0% |
| !! | TTTGTTGTTCTGGAACGTCC+TGG | - | Chr4:66989305-66989324 | MsG0480022006.01.T01:intron | 45.0% |
| ACCAGTAGAAGGGTCATACC+TGG | + | Chr4:66989267-66989286 | None:intergenic | 50.0% | |
| AGAAACTGGCGAACCCAATG+AGG | - | Chr4:66987744-66987763 | MsG0480022006.01.T01:three_prime_UTR | 50.0% | |
| AGGTACACTGTGCGATCCTT+TGG | - | Chr4:66988630-66988649 | MsG0480022006.01.T01:CDS | 50.0% | |
| CAAACCCCAGTGTTCTCCAA+AGG | - | Chr4:66987959-66987978 | MsG0480022006.01.T01:CDS | 50.0% | |
| CGAAGGATGATGCCATGAAG+TGG | - | Chr4:66989387-66989406 | MsG0480022006.01.T01:intron | 50.0% | |
| CGGAAGCCATTGATGTGTTG+CGG | + | Chr4:66987721-66987740 | None:intergenic | 50.0% | |
| CTCAGATCCAGTGAGAAGAG+GGG | + | Chr4:66987852-66987871 | None:intergenic | 50.0% | |
| CTCGTTCTCAACATCTCCGT+CGG | - | Chr4:66987785-66987804 | MsG0480022006.01.T01:three_prime_UTR | 50.0% | |
| GAAACTGGCGAACCCAATGA+GGG | - | Chr4:66987745-66987764 | MsG0480022006.01.T01:three_prime_UTR | 50.0% | |
| GAACCCAATGAGGGAGATCA+AGG | - | Chr4:66987754-66987773 | MsG0480022006.01.T01:three_prime_UTR | 50.0% | |
| GAACGTCCTGGTTATCGTGT+GGG | - | Chr4:66989317-66989336 | MsG0480022006.01.T01:intron | 50.0% | |
| GAGCAGATTGTCAAGCGTCA+GGG | + | Chr4:66989245-66989264 | None:intergenic | 50.0% | |
| TCCAGGTATGACCCTTCTAC+TGG | - | Chr4:66989263-66989282 | MsG0480022006.01.T01:intron | 50.0% | |
| TGATGCCATGAAGTGGTTCC+AGG | - | Chr4:66989394-66989413 | MsG0480022006.01.T01:intron | 50.0% | |
| TGGCATCATCCTTCGTGACA+CGG | + | Chr4:66989382-66989401 | None:intergenic | 50.0% | |
| TGGGTTCGCCAGTTTCTTCT+CGG | + | Chr4:66987741-66987760 | None:intergenic | 50.0% | |
| !! | GCAATGCAGCTTTTGGAGAG+TGG | - | Chr4:66988705-66988724 | MsG0480022006.01.T01:CDS | 50.0% |
| AACATCTCCGTCGGTGAGAG+TGG | - | Chr4:66987794-66987813 | MsG0480022006.01.T01:three_prime_UTR | 55.0% | |
| ACGATCTCCACTCTCACCGA+CGG | + | Chr4:66987804-66987823 | None:intergenic | 55.0% | |
| CAACACGGGCCTTGCATCTA+CGG | + | Chr4:66989349-66989368 | None:intergenic | 55.0% | |
| CCATTGATGTGTTGCGGCTG+CGG | + | Chr4:66987715-66987734 | None:intergenic | 55.0% | |
| GACGCTTGACAATCTGCTCC+AGG | - | Chr4:66989246-66989265 | MsG0480022006.01.T01:intron | 55.0% | |
| GGAACGTCCTGGTTATCGTG+TGG | - | Chr4:66989316-66989335 | MsG0480022006.01.T01:intron | 55.0% | |
| GGAGCAGATTGTCAAGCGTC+AGG | + | Chr4:66989246-66989265 | None:intergenic | 55.0% | |
| TCGTCTCACCAGAGCTGCAA+AGG | - | Chr4:66987820-66987839 | MsG0480022006.01.T01:three_prime_UTR | 55.0% | |
| CCGCAGCCGCAACACATCAA+TGG | - | Chr4:66987712-66987731 | MsG0480022006.01.T01:three_prime_UTR | 60.0% | |
| CGACGACCCACACGATAACC+AGG | + | Chr4:66989326-66989345 | None:intergenic | 60.0% | |
| CGTAGATGCAAGGCCCGTGT+TGG | - | Chr4:66989347-66989366 | MsG0480022006.01.T01:intron | 60.0% | |
| TTGATGTGTTGCGGCTGCGG+CGG | + | Chr4:66987712-66987731 | None:intergenic | 60.0% | |
| GGGTCGTCGCCGTAGATGCA+AGG | - | Chr4:66989337-66989356 | MsG0480022006.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 66987698 | 66989695 | 66987698 | ID=MsG0480022006.01;Name=MsG0480022006.01 |
| Chr4 | mRNA | 66987698 | 66989695 | 66987698 | ID=MsG0480022006.01.T01;Parent=MsG0480022006.01;Name=MsG0480022006.01.T01;_AED=0.49;_eAED=0.49;_QI=33|1|1|1|1|1|4|232|181 |
| Chr4 | exon | 66987698 | 66988125 | 66987698 | ID=MsG0480022006.01.T01:exon:7454;Parent=MsG0480022006.01.T01 |
| Chr4 | exon | 66988570 | 66988765 | 66988570 | ID=MsG0480022006.01.T01:exon:7453;Parent=MsG0480022006.01.T01 |
| Chr4 | exon | 66989413 | 66989455 | 66989413 | ID=MsG0480022006.01.T01:exon:7452;Parent=MsG0480022006.01.T01 |
| Chr4 | exon | 66989552 | 66989695 | 66989552 | ID=MsG0480022006.01.T01:exon:7451;Parent=MsG0480022006.01.T01 |
| Chr4 | five_prime_UTR | 66989663 | 66989695 | 66989663 | ID=MsG0480022006.01.T01:five_prime_utr;Parent=MsG0480022006.01.T01 |
| Chr4 | CDS | 66989552 | 66989662 | 66989552 | ID=MsG0480022006.01.T01:cds;Parent=MsG0480022006.01.T01 |
| Chr4 | CDS | 66989413 | 66989455 | 66989413 | ID=MsG0480022006.01.T01:cds;Parent=MsG0480022006.01.T01 |
| Chr4 | CDS | 66988570 | 66988765 | 66988570 | ID=MsG0480022006.01.T01:cds;Parent=MsG0480022006.01.T01 |
| Chr4 | CDS | 66987930 | 66988125 | 66987930 | ID=MsG0480022006.01.T01:cds;Parent=MsG0480022006.01.T01 |
| Chr4 | three_prime_UTR | 66987698 | 66987929 | 66987698 | ID=MsG0480022006.01.T01:three_prime_utr;Parent=MsG0480022006.01.T01 |
| Gene Sequence |
| Protein sequence |
