Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046486.01.T01 | XP_013457943.1 | 100 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 3.08E-114 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046486.01.T01 | P26564 | 98.137 | 161 | 2 | 1 | 1 | 160 | 1 | 161 | 1.42E-114 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046486.01.T01 | B7FMA6 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 1.47e-114 | 330 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048922.01 | MsG0880046486.01 | 0.839490 | 1.536222e-57 | 2.124907e-54 |
| MsG0180000096.01 | MsG0880046486.01 | 0.833017 | 6.787739e-56 | 7.719536e-53 |
| MsG0180000118.01 | MsG0880046486.01 | 0.841801 | 3.812197e-58 | 5.664631e-55 |
| MsG0180000459.01 | MsG0880046486.01 | -0.800698 | 1.275325e-48 | 5.977398e-46 |
| MsG0180001054.01 | MsG0880046486.01 | -0.808480 | 3.033359e-50 | 1.736367e-47 |
| MsG0180001169.01 | MsG0880046486.01 | 0.888003 | 8.677284e-73 | 6.604112e-69 |
| MsG0180001829.01 | MsG0880046486.01 | 0.844643 | 6.656205e-59 | 1.081549e-55 |
| MsG0180001837.01 | MsG0880046486.01 | 0.875213 | 3.678483e-68 | 1.703787e-64 |
| MsG0880046220.01 | MsG0880046486.01 | 0.802559 | 5.297710e-49 | 2.602962e-46 |
| MsG0880046486.01 | MsG0880046499.01 | 0.842033 | 3.310904e-58 | 4.956102e-55 |
| MsG0880046486.01 | MsG0880046760.01 | 0.840696 | 7.441512e-58 | 1.068521e-54 |
| MsG0880046486.01 | MsG0880047090.01 | 0.825778 | 3.893467e-54 | 3.583570e-51 |
| MsG0880046486.01 | MsG0880047310.01 | 0.812241 | 4.679960e-51 | 2.959940e-48 |
| MsG0180002738.01 | MsG0880046486.01 | 0.818128 | 2.303775e-52 | 1.709776e-49 |
| MsG0180003258.01 | MsG0880046486.01 | 0.815689 | 8.130172e-52 | 5.644157e-49 |
| MsG0180003585.01 | MsG0880046486.01 | 0.875678 | 2.550317e-68 | 1.201549e-64 |
| MsG0180003897.01 | MsG0880046486.01 | 0.885433 | 8.162555e-72 | 5.601729e-68 |
| MsG0180004064.01 | MsG0880046486.01 | 0.882033 | 1.462091e-70 | 8.767019e-67 |
| MsG0180004773.01 | MsG0880046486.01 | -0.828598 | 8.224813e-55 | 8.213209e-52 |
| MsG0180005321.01 | MsG0880046486.01 | 0.817616 | 3.007418e-52 | 2.200769e-49 |
| MsG0180005613.01 | MsG0880046486.01 | -0.804139 | 2.492797e-49 | 1.275475e-46 |
| MsG0180005789.01 | MsG0880046486.01 | 0.814682 | 1.360327e-51 | 9.187990e-49 |
| MsG0180006029.01 | MsG0880046486.01 | 0.832488 | 9.184666e-56 | 1.028127e-52 |
| MsG0280006301.01 | MsG0880046486.01 | 0.834292 | 3.261086e-56 | 3.853298e-53 |
| MsG0780040877.01 | MsG0880046486.01 | 0.814186 | 1.751360e-51 | 1.167139e-48 |
| MsG0780041076.01 | MsG0880046486.01 | 0.821480 | 3.949365e-53 | 3.216708e-50 |
| MsG0780041240.01 | MsG0880046486.01 | 0.808731 | 2.681116e-50 | 1.544688e-47 |
| MsG0780041244.01 | MsG0880046486.01 | 0.815401 | 9.419519e-52 | 6.487735e-49 |
| MsG0780041311.01 | MsG0880046486.01 | 0.801817 | 7.528750e-49 | 3.630099e-46 |
| MsG0780041522.01 | MsG0880046486.01 | 0.860232 | 2.384583e-63 | 6.471942e-60 |
| MsG0780041790.01 | MsG0880046486.01 | 0.828934 | 6.820005e-55 | 6.876890e-52 |
| MsG0880042517.01 | MsG0880046486.01 | 0.813736 | 2.200489e-51 | 1.448703e-48 |
| MsG0880042896.01 | MsG0880046486.01 | 0.821977 | 3.030168e-53 | 2.502967e-50 |
| MsG0880043076.01 | MsG0880046486.01 | 0.869816 | 2.331225e-66 | 8.867079e-63 |
| MsG0880043472.01 | MsG0880046486.01 | 0.834535 | 2.833605e-56 | 3.372714e-53 |
| MsG0280010994.01 | MsG0880046486.01 | -0.800429 | 1.447170e-48 | 6.737150e-46 |
| MsG0380014507.01 | MsG0880046486.01 | 0.826835 | 2.181493e-54 | 2.069139e-51 |
| MsG0680032459.01 | MsG0880046486.01 | 0.808361 | 3.216397e-50 | 1.835445e-47 |
| MsG0680035611.01 | MsG0880046486.01 | 0.859589 | 3.724510e-63 | 9.886821e-60 |
| MsG0480019051.01 | MsG0880046486.01 | 0.824740 | 6.851317e-54 | 6.122344e-51 |
| MsG0480019165.01 | MsG0880046486.01 | 0.841729 | 3.982199e-58 | 5.904013e-55 |
| MsG0480019604.01 | MsG0880046486.01 | -0.814784 | 1.291348e-51 | 8.745958e-49 |
| MsG0480019833.01 | MsG0880046486.01 | -0.814575 | 1.437053e-51 | 9.678331e-49 |
| MsG0480020796.01 | MsG0880046486.01 | 0.825851 | 3.741099e-54 | 3.450581e-51 |
| MsG0480020895.01 | MsG0880046486.01 | 0.803576 | 3.263180e-49 | 1.645751e-46 |
| MsG0480020911.01 | MsG0880046486.01 | 0.819728 | 9.974312e-53 | 7.737905e-50 |
| MsG0480021279.01 | MsG0880046486.01 | 0.896698 | 2.873171e-76 | 3.143120e-72 |
| MsG0480021417.01 | MsG0880046486.01 | 0.842075 | 3.225684e-58 | 4.835435e-55 |
| MsG0480021879.01 | MsG0880046486.01 | 0.816461 | 5.465945e-52 | 3.875234e-49 |
| MsG0480022006.01 | MsG0880046486.01 | 0.867529 | 1.279669e-65 | 4.482103e-62 |
| MsG0480022789.01 | MsG0880046486.01 | 0.823224 | 1.554189e-53 | 1.330106e-50 |
| MsG0480022955.01 | MsG0880046486.01 | 0.805641 | 1.210433e-49 | 6.437305e-47 |
| MsG0480023380.01 | MsG0880046486.01 | 0.818347 | 2.055142e-52 | 1.534592e-49 |
| MsG0480023774.01 | MsG0880046486.01 | 0.868367 | 6.885029e-66 | 2.484148e-62 |
| MsG0480023925.01 | MsG0880046486.01 | 0.806930 | 6.474690e-50 | 3.559021e-47 |
| MsG0480023931.01 | MsG0880046486.01 | 0.923950 | 1.349438e-89 | 5.556880e-85 |
| MsG0480023996.01 | MsG0880046486.01 | 0.830088 | 3.575783e-55 | 3.729233e-52 |
| MsG0580024059.01 | MsG0880046486.01 | 0.830510 | 2.820267e-55 | 2.977444e-52 |
| MsG0580024540.01 | MsG0880046486.01 | 0.863282 | 2.782022e-64 | 8.388886e-61 |
| MsG0580024738.01 | MsG0880046486.01 | 0.883795 | 3.315489e-71 | 2.132796e-67 |
| MsG0580025750.01 | MsG0880046486.01 | 0.811778 | 5.904644e-51 | 3.687981e-48 |
| MsG0580026029.01 | MsG0880046486.01 | 0.834800 | 2.431245e-56 | 2.916340e-53 |
| MsG0380015446.01 | MsG0880046486.01 | 0.871563 | 6.212540e-67 | 2.517543e-63 |
| MsG0380015857.01 | MsG0880046486.01 | 0.873394 | 1.520930e-67 | 6.590162e-64 |
| MsG0380016183.01 | MsG0880046486.01 | 0.854188 | 1.453948e-61 | 3.220987e-58 |
| MsG0380016607.01 | MsG0880046486.01 | 0.801544 | 8.566306e-49 | 4.101824e-46 |
| MsG0380016653.01 | MsG0880046486.01 | 0.868814 | 4.936783e-66 | 1.810373e-62 |
| MsG0380016744.01 | MsG0880046486.01 | 0.870350 | 1.559208e-66 | 6.045391e-63 |
| MsG0380016760.01 | MsG0880046486.01 | 0.894383 | 2.596372e-75 | 2.575301e-71 |
| MsG0380017385.01 | MsG0880046486.01 | -0.832752 | 7.902499e-56 | 8.915631e-53 |
| MsG0380017775.01 | MsG0880046486.01 | -0.816152 | 6.407375e-52 | 4.504929e-49 |
| MsG0480018164.01 | MsG0880046486.01 | 0.817284 | 3.571077e-52 | 2.589628e-49 |
| MsG0680030644.01 | MsG0880046486.01 | -0.809933 | 1.481237e-50 | 8.811427e-48 |
| MsG0280006629.01 | MsG0880046486.01 | 0.858911 | 5.952442e-63 | 1.543762e-59 |
| MsG0280006747.01 | MsG0880046486.01 | 0.895078 | 1.347740e-75 | 1.377190e-71 |
| MsG0280007016.01 | MsG0880046486.01 | -0.803767 | 2.979721e-49 | 1.510069e-46 |
| MsG0280007055.01 | MsG0880046486.01 | 0.852007 | 6.124000e-61 | 1.262012e-57 |
| MsG0280007084.01 | MsG0880046486.01 | 0.918128 | 2.283130e-86 | 6.839103e-82 |
| MsG0280007227.01 | MsG0880046486.01 | 0.802594 | 5.209114e-49 | 2.561902e-46 |
| MsG0280007606.01 | MsG0880046486.01 | 0.888897 | 3.926395e-73 | 3.098940e-69 |
| MsG0280007995.01 | MsG0880046486.01 | 0.876704 | 1.129734e-68 | 5.531045e-65 |
| MsG0280008263.01 | MsG0880046486.01 | 0.831883 | 1.296923e-55 | 1.426250e-52 |
| MsG0280010203.01 | MsG0880046486.01 | 0.804704 | 1.901468e-49 | 9.871419e-47 |
| MsG0780036015.01 | MsG0880046486.01 | 0.806102 | 9.684028e-50 | 5.211273e-47 |
| MsG0780038383.01 | MsG0880046486.01 | 0.847166 | 1.373154e-59 | 2.419593e-56 |
| MsG0780039937.01 | MsG0880046486.01 | 0.847438 | 1.156260e-59 | 2.055181e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046486.01.T01 | MTR_4g109130 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 3.73e-118 | 330 |
| MsG0880046486.01.T01 | MTR_3g437680 | 96.250 | 160 | 6 | 0 | 1 | 160 | 1 | 160 | 7.28e-113 | 317 |
| MsG0880046486.01.T01 | MTR_3g437680 | 96.250 | 160 | 6 | 0 | 1 | 160 | 1 | 160 | 7.28e-113 | 317 |
| MsG0880046486.01.T01 | MTR_4g130917 | 93.711 | 159 | 10 | 0 | 1 | 159 | 1 | 159 | 3.59e-109 | 308 |
| MsG0880046486.01.T01 | MTR_5g042990 | 91.824 | 159 | 13 | 0 | 1 | 159 | 1 | 159 | 1.19e-107 | 304 |
| MsG0880046486.01.T01 | MTR_4g130917 | 92.913 | 127 | 9 | 0 | 1 | 127 | 1 | 127 | 5.95e-86 | 248 |
| MsG0880046486.01.T01 | MTR_5g042990 | 92.126 | 127 | 10 | 0 | 1 | 127 | 1 | 127 | 1.42e-85 | 247 |
| MsG0880046486.01.T01 | MTR_5g042990 | 86.232 | 138 | 19 | 0 | 1 | 138 | 1 | 138 | 2.55e-85 | 247 |
| MsG0880046486.01.T01 | MTR_4g109130 | 90.000 | 120 | 12 | 0 | 1 | 120 | 1 | 120 | 2.89e-75 | 221 |
| MsG0880046486.01.T01 | MTR_4g112440 | 71.569 | 102 | 19 | 1 | 1 | 102 | 1 | 92 | 6.52e-48 | 150 |
| MsG0880046486.01.T01 | MTR_4g130907 | 46.094 | 128 | 21 | 2 | 18 | 145 | 42 | 121 | 1.62e-25 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046486.01.T01 | AT1G13950 | 91.195 | 159 | 13 | 1 | 1 | 159 | 1 | 158 | 7.23e-104 | 294 |
| MsG0880046486.01.T01 | AT1G69410 | 86.792 | 159 | 20 | 1 | 1 | 159 | 1 | 158 | 5.64e-101 | 287 |
| MsG0880046486.01.T01 | AT1G26630 | 81.646 | 158 | 28 | 1 | 1 | 158 | 1 | 157 | 3.47e-95 | 272 |
| MsG0880046486.01.T01 | AT1G26630 | 83.465 | 127 | 20 | 1 | 1 | 127 | 1 | 126 | 4.40e-76 | 223 |
Find 57 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGTGTTGGTGGTGTTTA+TGG | 0.113621 | 8:-73944770 | MsG0880046486.01.T01:three_prime_UTR |
| TCAAACGAGTATTTCCTTAT+TGG | 0.168992 | 8:-73944698 | MsG0880046486.01.T01:three_prime_UTR |
| CAAACGAGTATTTCCTTATT+GGG | 0.252830 | 8:-73944697 | MsG0880046486.01.T01:three_prime_UTR |
| TTCGTCAGACATATTGATTC+AGG | 0.282730 | 8:+73946287 | None:intergenic |
| CATCGGCCTTAGATTCAAAT+TGG | 0.297056 | 8:+73946259 | None:intergenic |
| CTCATTGACATTTCTGAAGA+TGG | 0.299146 | 8:-73945770 | MsG0880046486.01.T01:CDS |
| GTGAGCTTGCTCACTGAAAA+TGG | 0.342511 | 8:-73945172 | MsG0880046486.01.T01:CDS |
| TAAAGGACAAATACCCAATA+AGG | 0.344877 | 8:+73944684 | None:intergenic |
| CTTGGCATGTCCATGCTTCC+CGG | 0.359341 | 8:+73946020 | None:intergenic |
| ATCTGTGCTTTGAAGGATAT+TGG | 0.363464 | 8:-73944903 | MsG0880046486.01.T01:CDS |
| AGAGCACCAATTTGAATCTA+AGG | 0.377994 | 8:-73946265 | MsG0880046486.01.T01:CDS |
| AGCTTGTTGAGGATAAGTTT+TGG | 0.388597 | 8:+73946227 | None:intergenic |
| TACTATACTTGTAAAGATAA+AGG | 0.392946 | 8:+73944667 | None:intergenic |
| ATGAGAACAGAGATTTGTTT+CGG | 0.409267 | 8:+73946339 | None:intergenic |
| CGTAAAACTCTGCTCTAGTC+TGG | 0.417524 | 8:+73944594 | None:intergenic |
| CTGTTCTCATTATCGCTCTT+CGG | 0.419231 | 8:-73946326 | MsG0880046486.01.T01:five_prime_UTR |
| TAACTATGTATCCATTCTTA+CGG | 0.463557 | 8:+73946196 | None:intergenic |
| GGAGCAGATCTGTGCTTTGA+AGG | 0.467522 | 8:-73944910 | MsG0880046486.01.T01:CDS |
| AATGTCAATGAGCTGATAAT+CGG | 0.473877 | 8:+73945781 | None:intergenic |
| GCTGGTACCATCCGTAAGAA+TGG | 0.484451 | 8:-73946207 | MsG0880046486.01.T01:CDS |
| TGATTCAGGAGCGGCGGTGG+CGG | 0.485987 | 8:+73946301 | None:intergenic |
| TGTATCCGTGATGTCTGCTA+TGG | 0.510337 | 8:-73944937 | MsG0880046486.01.T01:CDS |
| CTTTGTGTGCAGATCAAGGA+TGG | 0.512763 | 8:-73944984 | MsG0880046486.01.T01:intron |
| CACTGAAAATGGAAACACTA+AGG | 0.519818 | 8:-73945161 | MsG0880046486.01.T01:CDS |
| TGTGAGACTAGTGGTGTTGG+TGG | 0.526439 | 8:-73944779 | MsG0880046486.01.T01:three_prime_UTR |
| GAAGTTTCGACTTCGAAGAC+CGG | 0.527896 | 8:-73946039 | MsG0880046486.01.T01:CDS |
| TATTGATTCAGGAGCGGCGG+TGG | 0.530564 | 8:+73946298 | None:intergenic |
| GAATAATCACCTTGCATGGA+CGG | 0.531922 | 8:+73946166 | None:intergenic |
| GGATGGATTTGCTGAGGGAA+AGG | 0.534900 | 8:-73944967 | MsG0880046486.01.T01:CDS |
| TGTCATCGGTGGGAAGTTTG+AGG | 0.539905 | 8:+73945134 | None:intergenic |
| ACTTCGAAGACCGGGAAGCA+TGG | 0.555740 | 8:-73946030 | MsG0880046486.01.T01:CDS |
| CTGAGTGAGCAGACTGTCAT+CGG | 0.555770 | 8:+73945120 | None:intergenic |
| TTTGAATCTAAGGCCGATGC+CGG | 0.559985 | 8:-73946255 | MsG0880046486.01.T01:CDS |
| TTACGAATAATCACCTTGCA+TGG | 0.560163 | 8:+73946162 | None:intergenic |
| TCTTGTGAGACTAGTGGTGT+TGG | 0.565302 | 8:-73944782 | MsG0880046486.01.T01:three_prime_UTR |
| CTTCACTTCAAAGAAGCTTG+AGG | 0.580602 | 8:-73945974 | MsG0880046486.01.T01:CDS |
| AAAACTTATCCTCAACAAGC+TGG | 0.581192 | 8:-73946225 | MsG0880046486.01.T01:CDS |
| AGTGAGCAGACTGTCATCGG+TGG | 0.592770 | 8:+73945123 | None:intergenic |
| AAGTTTCGACTTCGAAGACC+GGG | 0.594274 | 8:-73946038 | MsG0880046486.01.T01:CDS |
| TGTGCTTTGAAGGATATTGG+TGG | 0.594489 | 8:-73944900 | MsG0880046486.01.T01:CDS |
| CGGATGGTACCAGCTTGTTG+AGG | 0.595998 | 8:+73946216 | None:intergenic |
| CGTGATGTCTGCTATGGGTG+AGG | 0.597852 | 8:-73944931 | MsG0880046486.01.T01:CDS |
| CGATGACAGTCTGCTCACTC+AGG | 0.597987 | 8:-73945119 | MsG0880046486.01.T01:intron |
| ATAGATTCTTGTGAGACTAG+TGG | 0.603554 | 8:-73944788 | MsG0880046486.01.T01:three_prime_UTR |
| TATGTATCCATTCTTACGGA+TGG | 0.607030 | 8:+73946200 | None:intergenic |
| ACATCACAATTATGTGAAGA+CGG | 0.610965 | 8:+73945943 | None:intergenic |
| GTATCCGTGATGTCTGCTAT+GGG | 0.612684 | 8:-73944936 | MsG0880046486.01.T01:CDS |
| GTGAGCAGACTGTCATCGGT+GGG | 0.615967 | 8:+73945124 | None:intergenic |
| GATCAAGGATGGATTTGCTG+AGG | 0.618132 | 8:-73944973 | MsG0880046486.01.T01:CDS |
| ATCAAGGATGGATTTGCTGA+GGG | 0.621184 | 8:-73944972 | MsG0880046486.01.T01:CDS |
| CAATTGAAAGTGAAGACAAG+TGG | 0.623911 | 8:+73946367 | None:intergenic |
| AATAGCAACAAAATGACACT+TGG | 0.628478 | 8:+73946002 | None:intergenic |
| CAGACATCACGGATACAACA+AGG | 0.636222 | 8:+73944943 | None:intergenic |
| ACATATTGATTCAGGAGCGG+CGG | 0.647198 | 8:+73946295 | None:intergenic |
| CTCACCCATAGCAGACATCA+CGG | 0.653023 | 8:+73944932 | None:intergenic |
| CAGACATATTGATTCAGGAG+CGG | 0.719014 | 8:+73946292 | None:intergenic |
| TAATCGGTACGATTCACGTG+AGG | 0.748646 | 8:+73945797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACAAACTAAATTAAAA+CGG | - | Chr8:73945584-73945603 | MsG0880046486.01.T01:intron | 10.0% |
| !! | TAAACAAACTAAATTAAAAC+GGG | - | Chr8:73945585-73945604 | MsG0880046486.01.T01:intron | 15.0% |
| !!! | CAATTGTTTTTATTTTTGTT+AGG | - | Chr8:73945101-73945120 | MsG0880046486.01.T01:intron | 15.0% |
| !! | TACTATACTTGTAAAGATAA+AGG | + | Chr8:73946259-73946278 | None:intergenic | 20.0% |
| !! | TTCATAATATAGCTATCAAA+AGG | + | Chr8:73945673-73945692 | None:intergenic | 20.0% |
| !!! | ACAAAATAATCACTTTTCAA+AGG | + | Chr8:73945207-73945226 | None:intergenic | 20.0% |
| !!! | TGATTATGTTTTTGTATTGT+AGG | - | Chr8:73945729-73945748 | MsG0880046486.01.T01:intron | 20.0% |
| !!! | TTTAGTTTGTTTAAGCTTTA+TGG | + | Chr8:73945578-73945597 | None:intergenic | 20.0% |
| ! | AGAGCTTAGAAAAAAGATTT+CGG | + | Chr8:73945548-73945567 | None:intergenic | 25.0% |
| ! | TAACTATGTATCCATTCTTA+CGG | + | Chr8:73944730-73944749 | None:intergenic | 25.0% |
| ! | TAATCTGATTTAGATTAGTG+TGG | + | Chr8:73945488-73945507 | None:intergenic | 25.0% |
| !! | TTTTTGTACTTCGTTATTCA+TGG | - | Chr8:73944812-73944831 | MsG0880046486.01.T01:three_prime_UTR | 25.0% |
| !!! | TGTTTTTTGTTGTTGCTATT+AGG | - | Chr8:73944856-73944875 | MsG0880046486.01.T01:three_prime_UTR | 25.0% |
| AATAGCAACAAAATGACACT+TGG | + | Chr8:73944924-73944943 | None:intergenic | 30.0% | |
| AATGTCAATGAGCTGATAAT+CGG | + | Chr8:73945145-73945164 | None:intergenic | 30.0% | |
| ACATCACAATTATGTGAAGA+CGG | + | Chr8:73944983-73945002 | None:intergenic | 30.0% | |
| ATAAGCCTGTTACAGATTAA+TGG | + | Chr8:73945645-73945664 | None:intergenic | 30.0% | |
| CAAACGAGTATTTCCTTATT+GGG | - | Chr8:73946226-73946245 | MsG0880046486.01.T01:CDS | 30.0% | |
| GAGCTTAGAAAAAAGATTTC+GGG | + | Chr8:73945547-73945566 | None:intergenic | 30.0% | |
| TAAAGGACAAATACCCAATA+AGG | + | Chr8:73946242-73946261 | None:intergenic | 30.0% | |
| TAAGCCTGTTACAGATTAAT+GGG | + | Chr8:73945644-73945663 | None:intergenic | 30.0% | |
| TCAAACGAGTATTTCCTTAT+TGG | - | Chr8:73946225-73946244 | MsG0880046486.01.T01:CDS | 30.0% | |
| ! | ATGAGAACAGAGATTTGTTT+CGG | + | Chr8:73944587-73944606 | None:intergenic | 30.0% |
| ! | GATTTGTTCTTGCATTGTAA+TGG | - | Chr8:73945835-73945854 | MsG0880046486.01.T01:intron | 30.0% |
| ! | GGTACAATAACTTTTGTAAC+AGG | + | Chr8:73945622-73945641 | None:intergenic | 30.0% |
| ! | TGGTGTTTATGGATTTTTGT+TGG | - | Chr8:73946164-73946183 | MsG0880046486.01.T01:intron | 30.0% |
| AAAACTTATCCTCAACAAGC+TGG | - | Chr8:73944698-73944717 | MsG0880046486.01.T01:three_prime_UTR | 35.0% | |
| AAGCCTGTTACAGATTAATG+GGG | + | Chr8:73945643-73945662 | None:intergenic | 35.0% | |
| ATAGATTCTTGTGAGACTAG+TGG | - | Chr8:73946135-73946154 | MsG0880046486.01.T01:intron | 35.0% | |
| CACTGAAAATGGAAACACTA+AGG | - | Chr8:73945762-73945781 | MsG0880046486.01.T01:intron | 35.0% | |
| CATACACAAAATCAACTCAC+CGG | + | Chr8:73945439-73945458 | None:intergenic | 35.0% | |
| CCATACCCTTCAACATAAAA+GGG | + | Chr8:73945416-73945435 | None:intergenic | 35.0% | |
| TATGTATCCATTCTTACGGA+TGG | + | Chr8:73944726-73944745 | None:intergenic | 35.0% | |
| TATTAAAAACCGTCCATGCA+AGG | - | Chr8:73944748-73944767 | MsG0880046486.01.T01:three_prime_UTR | 35.0% | |
| TTACGAATAATCACCTTGCA+TGG | + | Chr8:73944764-73944783 | None:intergenic | 35.0% | |
| ! | AGAGCACCAATTTGAATCTA+AGG | - | Chr8:73944658-73944677 | MsG0880046486.01.T01:three_prime_UTR | 35.0% |
| ! | CTCATTGACATTTCTGAAGA+TGG | - | Chr8:73945153-73945172 | MsG0880046486.01.T01:CDS | 35.0% |
| ! | TCAGACCCTTTTATGTTGAA+GGG | - | Chr8:73945408-73945427 | MsG0880046486.01.T01:intron | 35.0% |
| ! | TTCAGACCCTTTTATGTTGA+AGG | - | Chr8:73945407-73945426 | MsG0880046486.01.T01:intron | 35.0% |
| !! | ATCTGTGCTTTGAAGGATAT+TGG | - | Chr8:73946020-73946039 | MsG0880046486.01.T01:CDS | 35.0% |
| !! | TTCGTCAGACATATTGATTC+AGG | + | Chr8:73944639-73944658 | None:intergenic | 35.0% |
| !!! | AGCTTGTTGAGGATAAGTTT+TGG | + | Chr8:73944699-73944718 | None:intergenic | 35.0% |
| CATCGGCCTTAGATTCAAAT+TGG | + | Chr8:73944667-73944686 | None:intergenic | 40.0% | |
| CTGTTCTCATTATCGCTCTT+CGG | - | Chr8:73944597-73944616 | MsG0880046486.01.T01:three_prime_UTR | 40.0% | |
| CTTCACTTCAAAGAAGCTTG+AGG | - | Chr8:73944949-73944968 | MsG0880046486.01.T01:CDS | 40.0% | |
| GAATAATCACCTTGCATGGA+CGG | + | Chr8:73944760-73944779 | None:intergenic | 40.0% | |
| GCCATACCCTTCAACATAAA+AGG | + | Chr8:73945417-73945436 | None:intergenic | 40.0% | |
| GTACCCCATTAATCTGTAAC+AGG | - | Chr8:73945637-73945656 | MsG0880046486.01.T01:intron | 40.0% | |
| TTTGCTTTGTGTGCAGATCA+AGG | - | Chr8:73945935-73945954 | MsG0880046486.01.T01:intron | 40.0% | |
| ! | CCCTTTTATGTTGAAGGGTA+TGG | - | Chr8:73945413-73945432 | MsG0880046486.01.T01:intron | 40.0% |
| ! | TTTATGTTGAAGGGTATGGC+CGG | - | Chr8:73945417-73945436 | MsG0880046486.01.T01:intron | 40.0% |
| !! | ATCAAGGATGGATTTGCTGA+GGG | - | Chr8:73945951-73945970 | MsG0880046486.01.T01:CDS | 40.0% |
| !! | CAGACATATTGATTCAGGAG+CGG | + | Chr8:73944634-73944653 | None:intergenic | 40.0% |
| !! | TGTGCTTTGAAGGATATTGG+TGG | - | Chr8:73946023-73946042 | MsG0880046486.01.T01:CDS | 40.0% |
| !!! | AGGATAAGTTTTGGAAGCAC+CGG | + | Chr8:73944690-73944709 | None:intergenic | 40.0% |
| AAGTTTCGACTTCGAAGACC+GGG | - | Chr8:73944885-73944904 | MsG0880046486.01.T01:exon | 45.0% | |
| CAGACATCACGGATACAACA+AGG | + | Chr8:73945983-73946002 | None:intergenic | 45.0% | |
| CGTAAAACTCTGCTCTAGTC+TGG | + | Chr8:73946332-73946351 | None:intergenic | 45.0% | |
| CTTTGTGTGCAGATCAAGGA+TGG | - | Chr8:73945939-73945958 | MsG0880046486.01.T01:intron | 45.0% | |
| GAAGTTTCGACTTCGAAGAC+CGG | - | Chr8:73944884-73944903 | MsG0880046486.01.T01:exon | 45.0% | |
| GTATCCGTGATGTCTGCTAT+GGG | - | Chr8:73945987-73946006 | MsG0880046486.01.T01:CDS | 45.0% | |
| TAATCGGTACGATTCACGTG+AGG | + | Chr8:73945129-73945148 | None:intergenic | 45.0% | |
| TCTTGTGAGACTAGTGGTGT+TGG | - | Chr8:73946141-73946160 | MsG0880046486.01.T01:intron | 45.0% | |
| TGTATCCGTGATGTCTGCTA+TGG | - | Chr8:73945986-73946005 | MsG0880046486.01.T01:CDS | 45.0% | |
| ! | GTGAGCTTGCTCACTGAAAA+TGG | - | Chr8:73945751-73945770 | MsG0880046486.01.T01:intron | 45.0% |
| ! | TTTGAATCTAAGGCCGATGC+CGG | - | Chr8:73944668-73944687 | MsG0880046486.01.T01:three_prime_UTR | 45.0% |
| !! | ACATATTGATTCAGGAGCGG+CGG | + | Chr8:73944631-73944650 | None:intergenic | 45.0% |
| !! | AGTGGTGTTGGTGGTGTTTA+TGG | - | Chr8:73946153-73946172 | MsG0880046486.01.T01:intron | 45.0% |
| !! | GATCAAGGATGGATTTGCTG+AGG | - | Chr8:73945950-73945969 | MsG0880046486.01.T01:CDS | 45.0% |
| CTCACCCATAGCAGACATCA+CGG | + | Chr8:73945994-73946013 | None:intergenic | 50.0% | |
| CTGAGTGAGCAGACTGTCAT+CGG | + | Chr8:73945806-73945825 | None:intergenic | 50.0% | |
| GCTGGTACCATCCGTAAGAA+TGG | - | Chr8:73944716-73944735 | MsG0880046486.01.T01:three_prime_UTR | 50.0% | |
| GGAGCAGATCTGTGCTTTGA+AGG | - | Chr8:73946013-73946032 | MsG0880046486.01.T01:CDS | 50.0% | |
| TGTCATCGGTGGGAAGTTTG+AGG | + | Chr8:73945792-73945811 | None:intergenic | 50.0% | |
| ! | TGTGAGACTAGTGGTGTTGG+TGG | - | Chr8:73946144-73946163 | MsG0880046486.01.T01:intron | 50.0% |
| !! | GGATGGATTTGCTGAGGGAA+AGG | - | Chr8:73945956-73945975 | MsG0880046486.01.T01:CDS | 50.0% |
| !!! | AGTTTTGGAAGCACCGGCAT+CGG | + | Chr8:73944684-73944703 | None:intergenic | 50.0% |
| ACTTCGAAGACCGGGAAGCA+TGG | - | Chr8:73944893-73944912 | MsG0880046486.01.T01:CDS | 55.0% | |
| AGTGAGCAGACTGTCATCGG+TGG | + | Chr8:73945803-73945822 | None:intergenic | 55.0% | |
| CGATGACAGTCTGCTCACTC+AGG | - | Chr8:73945804-73945823 | MsG0880046486.01.T01:intron | 55.0% | |
| CGTGATGTCTGCTATGGGTG+AGG | - | Chr8:73945992-73946011 | MsG0880046486.01.T01:CDS | 55.0% | |
| CTTGGCATGTCCATGCTTCC+CGG | + | Chr8:73944906-73944925 | None:intergenic | 55.0% | |
| GTGAGCAGACTGTCATCGGT+GGG | + | Chr8:73945802-73945821 | None:intergenic | 55.0% | |
| !! | CGGATGGTACCAGCTTGTTG+AGG | + | Chr8:73944710-73944729 | None:intergenic | 55.0% |
| !! | TATTGATTCAGGAGCGGCGG+TGG | + | Chr8:73944628-73944647 | None:intergenic | 55.0% |
| TGATTCAGGAGCGGCGGTGG+CGG | + | Chr8:73944625-73944644 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 73944558 | 73946387 | 73944558 | ID=MsG0880046486.01;Name=MsG0880046486.01 |
| Chr8 | mRNA | 73944558 | 73946387 | 73944558 | ID=MsG0880046486.01.T01;Parent=MsG0880046486.01;Name=MsG0880046486.01.T01;_AED=0.48;_eAED=0.48;_QI=89|1|1|1|1|1|5|332|160 |
| Chr8 | exon | 73944558 | 73944994 | 73944558 | ID=MsG0880046486.01.T01:exon:19021;Parent=MsG0880046486.01.T01 |
| Chr8 | exon | 73945120 | 73945194 | 73945120 | ID=MsG0880046486.01.T01:exon:19020;Parent=MsG0880046486.01.T01 |
| Chr8 | exon | 73945766 | 73945822 | 73945766 | ID=MsG0880046486.01.T01:exon:19019;Parent=MsG0880046486.01.T01 |
| Chr8 | exon | 73945945 | 73946067 | 73945945 | ID=MsG0880046486.01.T01:exon:19018;Parent=MsG0880046486.01.T01 |
| Chr8 | exon | 73946176 | 73946387 | 73946176 | ID=MsG0880046486.01.T01:exon:19017;Parent=MsG0880046486.01.T01 |
| Chr8 | five_prime_UTR | 73946299 | 73946387 | 73946299 | ID=MsG0880046486.01.T01:five_prime_utr;Parent=MsG0880046486.01.T01 |
| Chr8 | CDS | 73946176 | 73946298 | 73946176 | ID=MsG0880046486.01.T01:cds;Parent=MsG0880046486.01.T01 |
| Chr8 | CDS | 73945945 | 73946067 | 73945945 | ID=MsG0880046486.01.T01:cds;Parent=MsG0880046486.01.T01 |
| Chr8 | CDS | 73945766 | 73945822 | 73945766 | ID=MsG0880046486.01.T01:cds;Parent=MsG0880046486.01.T01 |
| Chr8 | CDS | 73945120 | 73945194 | 73945120 | ID=MsG0880046486.01.T01:cds;Parent=MsG0880046486.01.T01 |
| Chr8 | CDS | 73944890 | 73944994 | 73944890 | ID=MsG0880046486.01.T01:cds;Parent=MsG0880046486.01.T01 |
| Chr8 | three_prime_UTR | 73944558 | 73944889 | 73944558 | ID=MsG0880046486.01.T01:three_prime_utr;Parent=MsG0880046486.01.T01 |
| Gene Sequence |
| Protein sequence |
