Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003585.01.T01 | XP_013468200.1 | 100 | 166 | 0 | 0 | 1 | 166 | 1 | 166 | 1.00E-112 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003585.01.T01 | O50003 | 93.373 | 166 | 11 | 0 | 1 | 166 | 1 | 166 | 6.62E-108 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003585.01.T01 | I3SXZ6 | 100.000 | 166 | 0 | 0 | 1 | 166 | 1 | 166 | 4.79e-113 | 327 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048922.01 | MsG0180003585.01 | 0.872956 | 2.134254e-67 | 9.100014e-64 |
| MsG0180000118.01 | MsG0180003585.01 | 0.831553 | 1.564178e-55 | 1.703312e-52 |
| MsG0180001169.01 | MsG0180003585.01 | 0.861407 | 1.048629e-63 | 2.964261e-60 |
| MsG0180001829.01 | MsG0180003585.01 | 0.823690 | 1.209338e-53 | 1.048871e-50 |
| MsG0180002738.01 | MsG0180003585.01 | 0.876702 | 1.132004e-68 | 5.541479e-65 |
| MsG0180003585.01 | MsG0180003623.01 | 0.822691 | 2.068594e-53 | 1.743942e-50 |
| MsG0180003585.01 | MsG0180003897.01 | 0.877728 | 4.978105e-69 | 2.530207e-65 |
| MsG0180003585.01 | MsG0180004503.01 | 0.835033 | 2.123921e-56 | 2.565652e-53 |
| MsG0180003585.01 | MsG0180005384.01 | 0.810956 | 8.908311e-51 | 5.444976e-48 |
| MsG0180003585.01 | MsG0180005573.01 | 0.818563 | 1.836680e-52 | 1.379523e-49 |
| MsG0180003585.01 | MsG0180005789.01 | 0.861569 | 9.354761e-64 | 2.658783e-60 |
| MsG0180003585.01 | MsG0180005819.01 | 0.810073 | 1.381960e-50 | 8.250870e-48 |
| MsG0180003585.01 | MsG0280006301.01 | 0.870052 | 1.952716e-66 | 7.491930e-63 |
| MsG0180003585.01 | MsG0280006629.01 | 0.885707 | 6.447492e-72 | 4.471631e-68 |
| MsG0180003585.01 | MsG0280006747.01 | 0.897221 | 1.735258e-76 | 1.941151e-72 |
| MsG0180003585.01 | MsG0280007055.01 | 0.861608 | 9.103659e-64 | 2.590698e-60 |
| MsG0180003585.01 | MsG0280007084.01 | 0.852013 | 6.099902e-61 | 1.257278e-57 |
| MsG0180003585.01 | MsG0280007606.01 | 0.891280 | 4.588436e-74 | 3.996547e-70 |
| MsG0180003585.01 | MsG0280007995.01 | 0.837947 | 3.847736e-57 | 5.077196e-54 |
| MsG0180003585.01 | MsG0280010203.01 | 0.816501 | 5.353546e-52 | 3.799738e-49 |
| MsG0180003585.01 | MsG0280010232.01 | 0.836590 | 8.557330e-57 | 1.083287e-53 |
| MsG0180003585.01 | MsG0280010519.01 | 0.834826 | 2.394259e-56 | 2.874572e-53 |
| MsG0180003585.01 | MsG0380014507.01 | 0.862173 | 6.114280e-64 | 1.774188e-60 |
| MsG0180003585.01 | MsG0380015446.01 | 0.866736 | 2.293144e-65 | 7.811193e-62 |
| MsG0180003585.01 | MsG0380015857.01 | 0.869567 | 2.811202e-66 | 1.059938e-62 |
| MsG0180003585.01 | MsG0380016653.01 | 0.810488 | 1.124208e-50 | 6.785554e-48 |
| MsG0180003585.01 | MsG0380016678.01 | 0.866466 | 2.793276e-65 | 9.423486e-62 |
| MsG0180003585.01 | MsG0380016732.01 | 0.813584 | 2.377177e-51 | 1.558541e-48 |
| MsG0180003585.01 | MsG0380016744.01 | 0.902942 | 5.780357e-79 | 8.378775e-75 |
| MsG0180003585.01 | MsG0380016760.01 | 0.894829 | 1.705997e-75 | 1.724508e-71 |
| MsG0180003585.01 | MsG0380016805.01 | 0.853034 | 3.119752e-61 | 6.649361e-58 |
| MsG0180003585.01 | MsG0380017119.01 | 0.826192 | 3.103739e-54 | 2.890532e-51 |
| MsG0180003585.01 | MsG0380017516.01 | 0.851228 | 1.017502e-60 | 2.045557e-57 |
| MsG0180003585.01 | MsG0380018056.01 | 0.807165 | 5.776215e-50 | 3.194458e-47 |
| MsG0180003585.01 | MsG0480018164.01 | 0.832432 | 9.486546e-56 | 1.060098e-52 |
| MsG0180003585.01 | MsG0480019165.01 | 0.824415 | 8.171274e-54 | 7.232488e-51 |
| MsG0180003585.01 | MsG0480019632.01 | 0.814631 | 1.396618e-51 | 9.420199e-49 |
| MsG0180003585.01 | MsG0480020796.01 | 0.877950 | 4.164803e-69 | 2.135029e-65 |
| MsG0180003585.01 | MsG0480020895.01 | 0.816867 | 4.430772e-52 | 3.176761e-49 |
| MsG0180003585.01 | MsG0480020911.01 | 0.865896 | 4.235195e-65 | 1.400438e-61 |
| MsG0180003585.01 | MsG0480021279.01 | 0.871028 | 9.335527e-67 | 3.709653e-63 |
| MsG0180003585.01 | MsG0480021288.01 | 0.834301 | 3.244522e-56 | 3.834659e-53 |
| MsG0180003585.01 | MsG0480021417.01 | 0.903585 | 2.980237e-79 | 4.438803e-75 |
| MsG0180003585.01 | MsG0480022006.01 | 0.841390 | 4.891196e-58 | 7.176444e-55 |
| MsG0180003585.01 | MsG0480022086.01 | 0.837593 | 4.744769e-57 | 6.193001e-54 |
| MsG0180003585.01 | MsG0480022363.01 | 0.866307 | 3.136714e-65 | 1.052363e-61 |
| MsG0180003585.01 | MsG0480022955.01 | 0.840127 | 1.048362e-57 | 1.479075e-54 |
| MsG0180003585.01 | MsG0480023380.01 | 0.851133 | 1.081932e-60 | 2.168385e-57 |
| MsG0180003585.01 | MsG0480023774.01 | 0.866940 | 1.974441e-65 | 6.773784e-62 |
| MsG0180003585.01 | MsG0480023931.01 | 0.911258 | 7.450627e-83 | 1.582560e-78 |
| MsG0180003585.01 | MsG0480023996.01 | 0.903259 | 4.174564e-79 | 6.131937e-75 |
| MsG0180003585.01 | MsG0580024540.01 | 0.865566 | 5.383190e-65 | 1.759527e-61 |
| MsG0180003585.01 | MsG0580024738.01 | 0.910023 | 2.975995e-82 | 5.958191e-78 |
| MsG0180003585.01 | MsG0580024894.01 | 0.853764 | 1.925327e-61 | 4.205147e-58 |
| MsG0180003585.01 | MsG0580025750.01 | 0.878162 | 3.510819e-69 | 1.814082e-65 |
| MsG0180003585.01 | MsG0580028107.01 | 0.811067 | 8.426354e-51 | 5.165239e-48 |
| MsG0180003585.01 | MsG0580029047.01 | 0.852063 | 5.900904e-61 | 1.218390e-57 |
| MsG0180003585.01 | MsG0580029157.01 | 0.801821 | 7.515313e-49 | 3.623965e-46 |
| MsG0180003585.01 | MsG0580029754.01 | 0.802942 | 4.416258e-49 | 2.191155e-46 |
| MsG0180003585.01 | MsG0580030073.01 | 0.810158 | 1.324958e-50 | 7.927970e-48 |
| MsG0180003585.01 | MsG0680031368.01 | 0.868809 | 4.955354e-66 | 1.816890e-62 |
| MsG0180003585.01 | MsG0680032459.01 | 0.921803 | 2.237668e-88 | 8.166353e-84 |
| MsG0180003585.01 | MsG0680035611.01 | 0.865733 | 4.766461e-65 | 1.567274e-61 |
| MsG0180003585.01 | MsG0780036859.01 | 0.815302 | 9.911823e-52 | 6.808024e-49 |
| MsG0180003585.01 | MsG0780038383.01 | 0.824925 | 6.195941e-54 | 5.566081e-51 |
| MsG0180003585.01 | MsG0780040174.01 | 0.812224 | 4.721608e-51 | 2.984973e-48 |
| MsG0180003585.01 | MsG0780041240.01 | 0.841854 | 3.691543e-58 | 5.495041e-55 |
| MsG0180003585.01 | MsG0780041244.01 | 0.834239 | 3.362240e-56 | 3.966259e-53 |
| MsG0180003585.01 | MsG0780041311.01 | 0.826747 | 2.289861e-54 | 2.166392e-51 |
| MsG0180003585.01 | MsG0780041461.01 | 0.812896 | 3.365392e-51 | 2.165726e-48 |
| MsG0180003585.01 | MsG0780041522.01 | 0.885847 | 5.713365e-72 | 3.984103e-68 |
| MsG0180003585.01 | MsG0780041790.01 | 0.863190 | 2.970377e-64 | 8.927882e-61 |
| MsG0180003585.01 | MsG0880041941.01 | 0.820069 | 8.333703e-53 | 6.527518e-50 |
| MsG0180003585.01 | MsG0880042517.01 | 0.856446 | 3.200147e-62 | 7.640391e-59 |
| MsG0180003585.01 | MsG0880042896.01 | 0.875436 | 3.086343e-68 | 1.440692e-64 |
| MsG0180003585.01 | MsG0880043076.01 | 0.924923 | 3.679393e-90 | 1.595759e-85 |
| MsG0180003585.01 | MsG0880044204.01 | 0.834988 | 2.179423e-56 | 2.629412e-53 |
| MsG0180003585.01 | MsG0880046220.01 | 0.812332 | 4.471437e-51 | 2.835100e-48 |
| MsG0180003585.01 | MsG0880046243.01 | 0.836985 | 6.788635e-57 | 8.697103e-54 |
| MsG0180003585.01 | MsG0880046486.01 | 0.875678 | 2.550317e-68 | 1.201549e-64 |
| MsG0180003585.01 | MsG0880046499.01 | 0.800921 | 1.148451e-48 | 5.413669e-46 |
| MsG0180003585.01 | MsG0880046760.01 | 0.891966 | 2.449443e-74 | 2.193649e-70 |
| MsG0180003585.01 | MsG0880047090.01 | 0.803672 | 3.117332e-49 | 1.575917e-46 |
| MsG0180003585.01 | MsG0880047310.01 | 0.837133 | 6.220188e-57 | 8.004284e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180003585.01 | MsG0180006082.01 | PPI |
| MsG0180003585.01 | MsG0280009999.01 | PPI |
| MsG0180003585.01 | MsG0380016248.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003585.01.T01 | MTR_1g064500 | 100.000 | 166 | 0 | 0 | 1 | 166 | 1 | 166 | 1.22e-116 | 327 |
| MsG0180003585.01.T01 | MTR_4g059400 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 1.26e-114 | 322 |
| MsG0180003585.01.T01 | MTR_2g094300 | 83.537 | 164 | 27 | 0 | 1 | 164 | 1 | 164 | 1.27e-97 | 279 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003585.01.T01 | AT5G60670 | 90.964 | 166 | 15 | 0 | 1 | 166 | 1 | 166 | 1.32e-107 | 304 |
| MsG0180003585.01.T01 | AT2G37190 | 90.854 | 164 | 15 | 0 | 1 | 164 | 1 | 164 | 6.00e-107 | 303 |
| MsG0180003585.01.T01 | AT3G53430 | 90.244 | 164 | 16 | 0 | 1 | 164 | 1 | 164 | 1.15e-106 | 302 |
Find 56 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTTCGCTTGACGATTC+TGG | 0.204840 | 1:-64732118 | None:intergenic |
| ATGTCTTCTCCGATCTTCTT+TGG | 0.275399 | 1:-64732038 | None:intergenic |
| ACGAAGAATATTAAGCATAA+TGG | 0.343409 | 1:+64732209 | MsG0180003585.01.T01:CDS |
| ATCTGTGATGGGTCGAGCTT+TGG | 0.352336 | 1:-64731930 | None:intergenic |
| CTTGGAACTTGTGTTTCTGT+TGG | 0.355041 | 1:+64732323 | MsG0180003585.01.T01:CDS |
| CGAAGAATATTAAGCATAAT+GGG | 0.358983 | 1:+64732210 | MsG0180003585.01.T01:CDS |
| TCTGTTGGGTGTACTGTTGA+TGG | 0.361476 | 1:+64732338 | MsG0180003585.01.T01:CDS |
| CGCGGCGGCGCTTGTGATCA+AGG | 0.362603 | 1:+64732154 | MsG0180003585.01.T01:CDS |
| AATCTCTTGTTGCAAATCCT+TGG | 0.364185 | 1:-64732369 | None:intergenic |
| ATCTCTTGTTGCAAATCCTT+GGG | 0.391437 | 1:-64732368 | None:intergenic |
| TTGGAACTTGTGTTTCTGTT+GGG | 0.400252 | 1:+64732324 | MsG0180003585.01.T01:CDS |
| TGAAGGAACCAGAGAGAGAT+AGG | 0.404063 | 1:+64732180 | MsG0180003585.01.T01:CDS |
| GTCTTCTTCCTATCTCTCTC+TGG | 0.414689 | 1:-64732188 | None:intergenic |
| GAGACCGAGGGGACCGATCT+TGG | 0.416952 | 1:-64732012 | None:intergenic |
| CCAAAGAAACCGCAAAAGAC+TGG | 0.428144 | 1:+64732063 | MsG0180003585.01.T01:CDS |
| AGACCGAGGGGACCGATCTT+GGG | 0.428565 | 1:-64732011 | None:intergenic |
| GATCTTGGGAGCGAGGGAAC+TGG | 0.450092 | 1:-64731997 | None:intergenic |
| GGTACTGTGAAGGAGATTCT+TGG | 0.451833 | 1:+64732305 | MsG0180003585.01.T01:CDS |
| TGTGATGGGTCGAGCTTTGG+AGG | 0.459117 | 1:-64731927 | None:intergenic |
| TCCATGGCGAAGGAGCTTGC+GGG | 0.471935 | 1:+64732284 | MsG0180003585.01.T01:CDS |
| AGCTCCTTCGCCATGGATCT+CGG | 0.474540 | 1:-64732278 | None:intergenic |
| GATTATGAAGCCGAGATCCA+TGG | 0.485064 | 1:+64732268 | MsG0180003585.01.T01:CDS |
| GAAGTCTACGTCCGCGTCAC+CGG | 0.489324 | 1:+64731957 | MsG0180003585.01.T01:CDS |
| AGTTCCCTCGCTCCCAAGAT+CGG | 0.497799 | 1:+64731999 | MsG0180003585.01.T01:CDS |
| CTGTTGGGTGTACTGTTGAT+GGG | 0.503488 | 1:+64732339 | MsG0180003585.01.T01:CDS |
| GGGACCGATCTTGGGAGCGA+GGG | 0.509084 | 1:-64732003 | None:intergenic |
| CGCGTCACCGGTGGAGAAGT+CGG | 0.509186 | 1:+64731969 | MsG0180003585.01.T01:CDS |
| GGGGACCGATCTTGGGAGCG+AGG | 0.533033 | 1:-64732004 | None:intergenic |
| ATCCATGGCGAAGGAGCTTG+CGG | 0.534410 | 1:+64732283 | MsG0180003585.01.T01:CDS |
| GCTCCCAAGATCGGTCCCCT+CGG | 0.536064 | 1:+64732008 | MsG0180003585.01.T01:CDS |
| GCTTGTGATCAAGGCGTTGA+AGG | 0.539531 | 1:+64732163 | MsG0180003585.01.T01:CDS |
| ATCACAAGCGCCGCCGCGGA+GGG | 0.546925 | 1:-64732149 | None:intergenic |
| GGCGGCGCCGACTTCTCCAC+CGG | 0.558047 | 1:-64731976 | None:intergenic |
| GTCTACGTCCGCGTCACCGG+TGG | 0.568502 | 1:+64731960 | MsG0180003585.01.T01:CDS |
| TTGCAACAAGAGATTGATGA+TGG | 0.571171 | 1:+64732377 | MsG0180003585.01.T01:CDS |
| ACCCGCAAGCTCCTTCGCCA+TGG | 0.574079 | 1:-64732285 | None:intergenic |
| CTTGGGAGCGAGGGAACTGG+CGG | 0.575994 | 1:-64731994 | None:intergenic |
| GGTCTCTCTCCAAAGAAGAT+CGG | 0.584278 | 1:+64732029 | MsG0180003585.01.T01:CDS |
| GATCACAAGCGCCGCCGCGG+AGG | 0.585182 | 1:-64732150 | None:intergenic |
| TAGACTTCGACGATCTGTGA+TGG | 0.587094 | 1:-64731942 | None:intergenic |
| CGACTTCTCCACCGGTGACG+CGG | 0.588865 | 1:-64731968 | None:intergenic |
| AGAAACCGCAAAAGACTGGA+AGG | 0.591239 | 1:+64732067 | MsG0180003585.01.T01:CDS |
| CTTCTTTGGAGAGAGACCGA+GGG | 0.594178 | 1:-64732024 | None:intergenic |
| GGAGCTTGCGGGTACTGTGA+AGG | 0.597173 | 1:+64732295 | MsG0180003585.01.T01:CDS |
| TGCGGTTGTTCCCTCCGCGG+CGG | 0.605465 | 1:+64732139 | MsG0180003585.01.T01:CDS |
| TCTTCTTTGGAGAGAGACCG+AGG | 0.616068 | 1:-64732025 | None:intergenic |
| AGACTTCGACGATCTGTGAT+GGG | 0.618253 | 1:-64731941 | None:intergenic |
| GAATCGTCAAGCGAAGGTTG+CGG | 0.619107 | 1:+64732121 | MsG0180003585.01.T01:CDS |
| CTTGATCACAAGCGCCGCCG+CGG | 0.628883 | 1:-64732153 | None:intergenic |
| TGTTGATGGGAAAGATCCCA+AGG | 0.632585 | 1:+64732352 | MsG0180003585.01.T01:CDS |
| AGTCCAGAATCGTCAAGCGA+AGG | 0.641493 | 1:+64732115 | MsG0180003585.01.T01:CDS |
| GAAGCCGAGATCCATGGCGA+AGG | 0.654215 | 1:+64732274 | MsG0180003585.01.T01:CDS |
| CTGTGAGCTTGACTGTGACA+CGG | 0.663078 | 1:-64732094 | None:intergenic |
| GAAACCGCAAAAGACTGGAA+GGG | 0.670069 | 1:+64732068 | MsG0180003585.01.T01:CDS |
| GGTTGCGGTTGTTCCCTCCG+CGG | 0.676784 | 1:+64732136 | MsG0180003585.01.T01:CDS |
| TTCTTTGGAGAGAGACCGAG+GGG | 0.684696 | 1:-64732023 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACGAAGAATATTAAGCATAA+TGG | + | Chr1:64732209-64732228 | MsG0180003585.01.T01:CDS | 25.0% |
| ! | CGAAGAATATTAAGCATAAT+GGG | + | Chr1:64732210-64732229 | MsG0180003585.01.T01:CDS | 25.0% |
| AATCTCTTGTTGCAAATCCT+TGG | - | Chr1:64732372-64732391 | None:intergenic | 35.0% | |
| ATCTCTTGTTGCAAATCCTT+GGG | - | Chr1:64732371-64732390 | None:intergenic | 35.0% | |
| TTGCAACAAGAGATTGATGA+TGG | + | Chr1:64732377-64732396 | MsG0180003585.01.T01:CDS | 35.0% | |
| ! | TTGGAACTTGTGTTTCTGTT+GGG | + | Chr1:64732324-64732343 | MsG0180003585.01.T01:CDS | 35.0% |
| ATGTCTTCTCCGATCTTCTT+TGG | - | Chr1:64732041-64732060 | None:intergenic | 40.0% | |
| ! | CTTGGAACTTGTGTTTCTGT+TGG | + | Chr1:64732323-64732342 | MsG0180003585.01.T01:CDS | 40.0% |
| AGAAACCGCAAAAGACTGGA+AGG | + | Chr1:64732067-64732086 | MsG0180003585.01.T01:CDS | 45.0% | |
| AGACTTCGACGATCTGTGAT+GGG | - | Chr1:64731944-64731963 | None:intergenic | 45.0% | |
| CCAAAGAAACCGCAAAAGAC+TGG | + | Chr1:64732063-64732082 | MsG0180003585.01.T01:CDS | 45.0% | |
| CTGTTGGGTGTACTGTTGAT+GGG | + | Chr1:64732339-64732358 | MsG0180003585.01.T01:CDS | 45.0% | |
| GAAACCGCAAAAGACTGGAA+GGG | + | Chr1:64732068-64732087 | MsG0180003585.01.T01:CDS | 45.0% | |
| GATTATGAAGCCGAGATCCA+TGG | + | Chr1:64732268-64732287 | MsG0180003585.01.T01:CDS | 45.0% | |
| GGTACTGTGAAGGAGATTCT+TGG | + | Chr1:64732305-64732324 | MsG0180003585.01.T01:CDS | 45.0% | |
| GGTCTCTCTCCAAAGAAGAT+CGG | + | Chr1:64732029-64732048 | MsG0180003585.01.T01:CDS | 45.0% | |
| GTCTTCTTCCTATCTCTCTC+TGG | - | Chr1:64732191-64732210 | None:intergenic | 45.0% | |
| TAGACTTCGACGATCTGTGA+TGG | - | Chr1:64731945-64731964 | None:intergenic | 45.0% | |
| TCTGTTGGGTGTACTGTTGA+TGG | + | Chr1:64732338-64732357 | MsG0180003585.01.T01:CDS | 45.0% | |
| TGAAGGAACCAGAGAGAGAT+AGG | + | Chr1:64732180-64732199 | MsG0180003585.01.T01:CDS | 45.0% | |
| ! | CCAGTCTTTTGCGGTTTCTT+TGG | - | Chr1:64732066-64732085 | None:intergenic | 45.0% |
| ! | TGTTGATGGGAAAGATCCCA+AGG | + | Chr1:64732352-64732371 | MsG0180003585.01.T01:CDS | 45.0% |
| AGTCCAGAATCGTCAAGCGA+AGG | + | Chr1:64732115-64732134 | MsG0180003585.01.T01:CDS | 50.0% | |
| CAACCTTCGCTTGACGATTC+TGG | - | Chr1:64732121-64732140 | None:intergenic | 50.0% | |
| CTGTGAGCTTGACTGTGACA+CGG | - | Chr1:64732097-64732116 | None:intergenic | 50.0% | |
| GAATCGTCAAGCGAAGGTTG+CGG | + | Chr1:64732121-64732140 | MsG0180003585.01.T01:CDS | 50.0% | |
| ! | CTTCTTTGGAGAGAGACCGA+GGG | - | Chr1:64732027-64732046 | None:intergenic | 50.0% |
| ! | GAGACCCTTCCAGTCTTTTG+CGG | - | Chr1:64732075-64732094 | None:intergenic | 50.0% |
| ! | TCTTCTTTGGAGAGAGACCG+AGG | - | Chr1:64732028-64732047 | None:intergenic | 50.0% |
| ! | TTCTTTGGAGAGAGACCGAG+GGG | - | Chr1:64732026-64732045 | None:intergenic | 50.0% |
| !! | ATCTGTGATGGGTCGAGCTT+TGG | - | Chr1:64731933-64731952 | None:intergenic | 50.0% |
| !! | GCTTGTGATCAAGGCGTTGA+AGG | + | Chr1:64732163-64732182 | MsG0180003585.01.T01:CDS | 50.0% |
| AGCTCCTTCGCCATGGATCT+CGG | - | Chr1:64732281-64732300 | None:intergenic | 55.0% | |
| AGTTCCCTCGCTCCCAAGAT+CGG | + | Chr1:64731999-64732018 | MsG0180003585.01.T01:CDS | 55.0% | |
| ATCCATGGCGAAGGAGCTTG+CGG | + | Chr1:64732283-64732302 | MsG0180003585.01.T01:CDS | 55.0% | |
| !! | TGTGATGGGTCGAGCTTTGG+AGG | - | Chr1:64731930-64731949 | None:intergenic | 55.0% |
| AGACCGAGGGGACCGATCTT+GGG | - | Chr1:64732014-64732033 | None:intergenic | 60.0% | |
| GAAGCCGAGATCCATGGCGA+AGG | + | Chr1:64732274-64732293 | MsG0180003585.01.T01:CDS | 60.0% | |
| GAAGTCTACGTCCGCGTCAC+CGG | + | Chr1:64731957-64731976 | MsG0180003585.01.T01:CDS | 60.0% | |
| GATCTTGGGAGCGAGGGAAC+TGG | - | Chr1:64732000-64732019 | None:intergenic | 60.0% | |
| TCCATGGCGAAGGAGCTTGC+GGG | + | Chr1:64732284-64732303 | MsG0180003585.01.T01:CDS | 60.0% | |
| ! | GGAGCTTGCGGGTACTGTGA+AGG | + | Chr1:64732295-64732314 | MsG0180003585.01.T01:CDS | 60.0% |
| ACCCGCAAGCTCCTTCGCCA+TGG | - | Chr1:64732288-64732307 | None:intergenic | 65.0% | |
| CGACTTCTCCACCGGTGACG+CGG | - | Chr1:64731971-64731990 | None:intergenic | 65.0% | |
| CGCGTCACCGGTGGAGAAGT+CGG | + | Chr1:64731969-64731988 | MsG0180003585.01.T01:CDS | 65.0% | |
| CTTGGGAGCGAGGGAACTGG+CGG | - | Chr1:64731997-64732016 | None:intergenic | 65.0% | |
| GAGACCGAGGGGACCGATCT+TGG | - | Chr1:64732015-64732034 | None:intergenic | 65.0% | |
| GCTCCCAAGATCGGTCCCCT+CGG | + | Chr1:64732008-64732027 | MsG0180003585.01.T01:CDS | 65.0% | |
| GGGACCGATCTTGGGAGCGA+GGG | - | Chr1:64732006-64732025 | None:intergenic | 65.0% | |
| GGTTGCGGTTGTTCCCTCCG+CGG | + | Chr1:64732136-64732155 | MsG0180003585.01.T01:CDS | 65.0% | |
| ! | CTTGATCACAAGCGCCGCCG+CGG | - | Chr1:64732156-64732175 | None:intergenic | 65.0% |
| CGCGGCGGCGCTTGTGATCA+AGG | + | Chr1:64732154-64732173 | MsG0180003585.01.T01:CDS | 70.0% | |
| GGGGACCGATCTTGGGAGCG+AGG | - | Chr1:64732007-64732026 | None:intergenic | 70.0% | |
| GTCTACGTCCGCGTCACCGG+TGG | + | Chr1:64731960-64731979 | MsG0180003585.01.T01:CDS | 70.0% | |
| TGCGGTTGTTCCCTCCGCGG+CGG | + | Chr1:64732139-64732158 | MsG0180003585.01.T01:CDS | 70.0% | |
| ! | ATCACAAGCGCCGCCGCGGA+GGG | - | Chr1:64732152-64732171 | None:intergenic | 70.0% |
| ! | GATCACAAGCGCCGCCGCGG+AGG | - | Chr1:64732153-64732172 | None:intergenic | 75.0% |
| !! | GGCGGCGCCGACTTCTCCAC+CGG | - | Chr1:64731979-64731998 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 64731924 | 64732424 | 64731924 | ID=MsG0180003585.01;Name=MsG0180003585.01 |
| Chr1 | mRNA | 64731924 | 64732424 | 64731924 | ID=MsG0180003585.01.T01;Parent=MsG0180003585.01;Name=MsG0180003585.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|166 |
| Chr1 | exon | 64731924 | 64732424 | 64731924 | ID=MsG0180003585.01.T01:exon:50386;Parent=MsG0180003585.01.T01 |
| Chr1 | CDS | 64731924 | 64732424 | 64731924 | ID=MsG0180003585.01.T01:cds;Parent=MsG0180003585.01.T01 |
| Gene Sequence |
| Protein sequence |
