AlfalfaGEDB | MsG0580024738.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024738.01

KEGG: K02898
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0015934
PFAM: PF00467 PF16906

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024738.01.T01	XP_003611586.2	98.507	134	2	0	1	134	1	134	1.44E-87	263

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024738.01.T01	Q9FJX2	84.783	138	21	0	1	138	1	138	5.16E-81	239

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024738.01.T01	G7K2J3	98.507	134	2	0	1	134	1	134	6.89e-88	263

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048040.01	MsG0580024738.01	0.805262	1.453533e-49	7.654752e-47
MsG0080048922.01	MsG0580024738.01	0.877845	4.530511e-69	2.312704e-65
MsG0080048933.01	MsG0580024738.01	0.809782	1.596313e-50	9.458727e-48
MsG0180000096.01	MsG0580024738.01	0.860476	2.011375e-63	5.505493e-60
MsG0180000118.01	MsG0580024738.01	0.909422	5.794669e-82	1.126147e-77
MsG0180001169.01	MsG0580024738.01	0.906231	1.850658e-80	3.104189e-76
MsG0180001829.01	MsG0580024738.01	0.886008	4.968983e-72	3.486985e-68
MsG0180001837.01	MsG0580024738.01	0.813423	2.579353e-51	1.683742e-48
MsG0180002738.01	MsG0580024738.01	0.892101	2.164373e-74	1.949546e-70
MsG0180003585.01	MsG0580024738.01	0.910023	2.975995e-82	5.958191e-78
MsG0180003897.01	MsG0580024738.01	0.934624	3.026030e-96	2.315599e-91
MsG0180004064.01	MsG0580024738.01	0.830967	2.179075e-55	2.331899e-52
MsG0180004503.01	MsG0580024738.01	0.867848	1.011347e-65	3.582196e-62
MsG0180004829.01	MsG0580024738.01	0.882886	7.151865e-71	4.433403e-67
MsG0180004946.01	MsG0580024738.01	0.815967	7.047366e-52	4.929720e-49
MsG0180005384.01	MsG0580024738.01	0.865574	5.348848e-65	1.748782e-61
MsG0180005573.01	MsG0580024738.01	0.872150	3.966634e-67	1.642042e-63
MsG0180005789.01	MsG0580024738.01	0.821558	3.788705e-53	3.092656e-50
MsG0280006301.01	MsG0580024738.01	0.872846	2.322442e-67	9.863808e-64
MsG0280011308.01	MsG0580024738.01	0.816034	6.809652e-52	4.772231e-49
MsG0380014507.01	MsG0580024738.01	0.833643	4.739278e-56	5.491333e-53
MsG0480019165.01	MsG0580024738.01	0.861817	7.855639e-64	2.251040e-60
MsG0480019632.01	MsG0580024738.01	0.867959	9.317322e-66	3.312765e-62
MsG0480020796.01	MsG0580024738.01	0.899017	3.004477e-77	3.645546e-73
MsG0480020895.01	MsG0580024738.01	0.841059	5.977407e-58	8.678969e-55
MsG0480020911.01	MsG0580024738.01	0.901888	1.697462e-78	2.341873e-74
MsG0480021279.01	MsG0580024738.01	0.934525	3.531197e-96	2.681042e-91
MsG0480021288.01	MsG0580024738.01	0.802219	6.224967e-49	3.032236e-46
MsG0480021417.01	MsG0580024738.01	0.949667	7.995695e-108	1.610576e-102
MsG0480021879.01	MsG0580024738.01	0.838091	3.534060e-57	4.683281e-54
MsG0480022006.01	MsG0580024738.01	0.914511	1.760309e-84	4.389167e-80
MsG0480022086.01	MsG0580024738.01	0.803110	4.075304e-49	2.030701e-46
MsG0480022363.01	MsG0580024738.01	0.891847	2.733484e-74	2.436824e-70
MsG0480022789.01	MsG0580024738.01	0.804838	1.782154e-49	9.284822e-47
MsG0480022955.01	MsG0580024738.01	0.895966	5.794200e-76	6.139523e-72
MsG0480023050.01	MsG0580024738.01	0.846359	2.282636e-59	3.918762e-56
MsG0480023380.01	MsG0580024738.01	0.924542	6.128872e-90	2.604598e-85
MsG0480023774.01	MsG0580024738.01	0.913571	5.273270e-84	1.255793e-79
MsG0480023931.01	MsG0580024738.01	0.918924	8.539103e-87	2.669142e-82
MsG0480023970.01	MsG0580024738.01	0.806699	7.247610e-50	3.960030e-47
MsG0480023996.01	MsG0580024738.01	0.898840	3.574143e-77	4.302055e-73
MsG0580024059.01	MsG0580024738.01	0.829778	4.254864e-55	4.398783e-52
MsG0580024481.01	MsG0580024738.01	0.857714	1.352112e-62	3.368178e-59
MsG0580024540.01	MsG0580024738.01	0.903939	2.064745e-79	3.120863e-75
MsG0580024738.01	MsG0580024894.01	0.886913	2.259541e-72	1.645402e-68
MsG0580024738.01	MsG0580025073.01	0.835242	1.881039e-56	2.286933e-53
MsG0580024738.01	MsG0580025750.01	0.921093	5.565075e-88	1.951256e-83
MsG0580024738.01	MsG0580029168.01	0.800632	1.315941e-48	6.157635e-46
MsG0580024738.01	MsG0580029284.01	0.863806	1.914006e-64	5.877703e-61
MsG0580024738.01	MsG0580029702.01	0.822260	2.604746e-53	2.169186e-50
MsG0580024738.01	MsG0580030073.01	0.892556	1.423265e-74	1.308046e-70
MsG0580024738.01	MsG0680031368.01	0.892434	1.593845e-74	1.456880e-70
MsG0580024738.01	MsG0680032459.01	0.904053	1.832813e-79	2.785283e-75
MsG0580024738.01	MsG0680035611.01	0.910504	1.739421e-82	3.563268e-78
MsG0580024738.01	MsG0780036015.01	0.804929	1.706062e-49	8.909321e-47
MsG0580024738.01	MsG0780036859.01	0.862645	4.376677e-64	1.290873e-60
MsG0580024738.01	MsG0780037290.01	0.839486	1.539699e-57	2.129438e-54
MsG0580024738.01	MsG0780038383.01	0.893445	6.245301e-75	5.950314e-71
MsG0580024738.01	MsG0780039937.01	0.806910	6.538534e-50	3.592215e-47
MsG0580024738.01	MsG0780041058.01	0.850413	1.725667e-60	3.377650e-57
MsG0580024738.01	MsG0780041076.01	0.810773	9.757158e-51	5.934418e-48
MsG0580024738.01	MsG0780041240.01	0.874262	7.747691e-68	3.465102e-64
MsG0580024738.01	MsG0780041244.01	0.899609	1.673432e-77	2.084515e-73
MsG0580024738.01	MsG0780041311.01	0.856866	2.406966e-62	5.826068e-59
MsG0580024738.01	MsG0780041461.01	0.823762	1.163414e-53	1.011060e-50
MsG0580024738.01	MsG0780041522.01	0.919969	2.312812e-87	7.640006e-83
MsG0580024738.01	MsG0780041790.01	0.874219	8.010853e-68	3.576446e-64
MsG0580024738.01	MsG0880041941.01	0.863879	1.816010e-64	5.590605e-61
MsG0580024738.01	MsG0880042209.01	0.823918	1.069377e-53	9.333668e-51
MsG0580024738.01	MsG0880042517.01	0.935154	1.323645e-96	1.048532e-91
MsG0580024738.01	MsG0880042896.01	0.826530	2.579258e-54	2.425132e-51
MsG0580024738.01	MsG0880043076.01	0.935923	3.944838e-97	3.265323e-92
MsG0580024738.01	MsG0880044204.01	0.872458	3.131216e-67	1.311454e-63
MsG0580024738.01	MsG0880045836.01	0.851770	7.149132e-61	1.462420e-57
MsG0580024738.01	MsG0880046220.01	0.897609	1.191427e-76	1.356566e-72
MsG0580024738.01	MsG0880046486.01	0.883795	3.315489e-71	2.132796e-67
MsG0580024738.01	MsG0880046499.01	0.801809	7.555695e-49	3.642412e-46
MsG0580024738.01	MsG0880046760.01	0.866576	2.578118e-65	8.731787e-62
MsG0580024738.01	MsG0880047146.01	0.822210	2.675803e-53	2.225096e-50
MsG0580024738.01	MsG0880047310.01	0.851220	1.022513e-60	2.055116e-57
MsG0380015446.01	MsG0580024738.01	0.842429	2.599537e-58	3.940916e-55
MsG0380015494.01	MsG0580024738.01	0.838892	2.195691e-57	2.981739e-54
MsG0380015766.01	MsG0580024738.01	0.849224	3.708978e-60	6.984067e-57
MsG0380015857.01	MsG0580024738.01	0.913213	7.980926e-84	1.867245e-79
MsG0380016607.01	MsG0580024738.01	0.843200	1.621676e-58	2.518050e-55
MsG0380016622.01	MsG0580024738.01	0.821522	3.860445e-53	3.147977e-50
MsG0380016653.01	MsG0580024738.01	0.870399	1.502443e-66	5.836216e-63
MsG0380016678.01	MsG0580024738.01	0.912401	2.031994e-83	4.564065e-79
MsG0380016732.01	MsG0580024738.01	0.847955	8.335486e-60	1.506138e-56
MsG0380016744.01	MsG0580024738.01	0.913076	9.352357e-84	2.173226e-79
MsG0380016760.01	MsG0580024738.01	0.905910	2.604427e-80	4.308249e-76
MsG0380016805.01	MsG0580024738.01	0.837101	6.341253e-57	8.152063e-54
MsG0380017119.01	MsG0580024738.01	0.845283	4.472290e-59	7.416281e-56
MsG0380018056.01	MsG0580024738.01	0.828439	8.983599e-55	8.930090e-52
MsG0480018164.01	MsG0580024738.01	0.890036	1.416471e-73	1.171166e-69
MsG0280006629.01	MsG0580024738.01	0.912597	1.622265e-83	3.677182e-79
MsG0280006747.01	MsG0580024738.01	0.931821	2.141879e-94	1.385978e-89
MsG0280007055.01	MsG0580024738.01	0.925931	9.386460e-91	4.304333e-86
MsG0280007084.01	MsG0580024738.01	0.858523	7.772766e-63	1.989316e-59
MsG0280007606.01	MsG0580024738.01	0.848879	4.625606e-60	8.611629e-57
MsG0280007995.01	MsG0580024738.01	0.865260	6.720555e-65	2.172700e-61
MsG0280010203.01	MsG0580024738.01	0.869150	3.840980e-66	1.426481e-62
MsG0280010232.01	MsG0580024738.01	0.885782	6.039786e-72	4.201986e-68
MsG0280010519.01	MsG0580024738.01	0.831160	1.954147e-55	2.103061e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024738.01.T01	MTR_5g015570	98.507	134	2	0	1	134	1	134	1.75e-91	263
MsG0580024738.01.T01	MTR_2g012450	94.030	134	8	0	1	134	1	134	5.70e-79	232
MsG0580024738.01.T01	MTR_5g096540	91.045	134	12	0	1	134	1	134	2.29e-77	228
MsG0580024738.01.T01	MTR_4g126220	92.647	68	5	0	13	80	103	170	1.36e-38	130
MsG0580024738.01.T01	MTR_8g073140	60.465	86	7	1	30	115	1	59	8.87e-25	92.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024738.01.T01	AT5G67510	84.783	138	21	0	1	138	1	138	5.26e-82	239
MsG0580024738.01.T01	AT3G49910	83.333	138	23	0	1	138	1	138	3.62e-81	237

Find 61 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGTAGCTCCTTTGCATTTA+TGG	0.162567	5:+9012451	MsG0580024738.01.T01:CDS
CCGACTATTCCCAAACTTAT+TGG	0.206329	5:+9012376	MsG0580024738.01.T01:CDS
TGTAGCTCCTTTGCATTTAT+GGG	0.278566	5:+9012452	MsG0580024738.01.T01:CDS
CAACGTTAGACCAATAAGTT+TGG	0.320644	5:-9012386	None:intergenic
CTTCCCTTCACGTCCCTTGA+AGG	0.334674	5:-9010671	None:intergenic
TGCAAGTTTATCGTAGGAAA+TGG	0.354784	5:+9010698	MsG0580024738.01.T01:CDS
TGCGGTTTATGTCTTTGATT+TGG	0.373013	5:+9012407	MsG0580024738.01.T01:CDS
TACCAAGATTCGTTTGGATA+AGG	0.385625	5:+9010804	MsG0580024738.01.T01:CDS
ATCCTTATCCAAACGAATCT+TGG	0.396970	5:-9010806	None:intergenic
AAAACACGACGGACGCTTGA+TGG	0.398070	5:-9010553	None:intergenic
ATTACACGTGAGAAGGTTAA+TGG	0.405029	5:+9010739	MsG0580024738.01.T01:CDS
TGTGATTACCAAGATTCGTT+TGG	0.408401	5:+9010798	MsG0580024738.01.T01:CDS
TTGGTAATCACAACCTTTGA+AGG	0.416639	5:-9010787	None:intergenic
GGGTCGTGCCGCTGCTGATA+AGG	0.421050	5:+9010858	MsG0580024738.01.T01:CDS
TCGTAAGGATGATGAAGTTC+AGG	0.424559	5:+9010636	MsG0580024738.01.T01:CDS
CGACGGCTGCTTGAAACCCT+AGG	0.429571	5:-9010502	None:intergenic
AACGTTAGACCAATAAGTTT+GGG	0.455184	5:-9012385	None:intergenic
AAACACGACGGACGCTTGAT+GGG	0.465655	5:-9010552	None:intergenic
GCGTTCTCTTCCCGTTCGTA+AGG	0.475960	5:+9010621	MsG0580024738.01.T01:CDS
CTGAATACCATATGGCTAGC+TGG	0.494215	5:-9011427	None:intergenic
GAAAAGCTTGCTTGATCGTA+AGG	0.501897	5:+9010831	MsG0580024738.01.T01:CDS
GCAAGTTTATCGTAGGAAAT+GGG	0.504322	5:+9010699	MsG0580024738.01.T01:CDS
CTGCACTCCAGCTAGCCATA+TGG	0.505307	5:+9011420	MsG0580024738.01.T01:CDS
ACTTCATCATCCTTACGAAC+GGG	0.506464	5:-9010631	None:intergenic
TTGATGAGCGCACCTCTCTC+CGG	0.508962	5:+9010574	MsG0580024738.01.T01:CDS
ACACAATGAAGTTCAACCCT+AGG	0.518183	5:+9010485	None:intergenic
GGTAGTGAGAGGAACCTTCA+AGG	0.522192	5:+9010657	MsG0580024738.01.T01:CDS
CCAATAAGTTTGGGAATAGT+CGG	0.530448	5:-9012376	None:intergenic
GTACTTTGAACGGAGGTCAC+CGG	0.530458	5:-9010593	None:intergenic
AACTTATTGGTCTAACGTTG+CGG	0.543576	5:+9012389	MsG0580024738.01.T01:CDS
CAGCCGTCGCAAGAGCCGCA+AGG	0.548428	5:+9010516	MsG0580024738.01.T01:CDS
CACAATGAAGTTCAACCCTA+GGG	0.551275	5:+9010486	None:intergenic
AATGGGTGATTCATATTGAG+AGG	0.559538	5:+9010716	MsG0580024738.01.T01:CDS
AACTTCATCATCCTTACGAA+CGG	0.563073	5:-9010632	None:intergenic
GGAACCTTCAAGGGACGTGA+AGG	0.563323	5:+9010667	MsG0580024738.01.T01:CDS
ACGACGGACGCTTGATGGGG+CGG	0.563774	5:-9010548	None:intergenic
GACGGCTGCTTGAAACCCTA+GGG	0.565492	5:-9010501	None:intergenic
GTAGCTCCTTTGCATTTATG+GGG	0.567279	5:+9012453	MsG0580024738.01.T01:CDS
TGTTGGTGTTGATCCTTCAA+AGG	0.568879	5:+9010774	MsG0580024738.01.T01:CDS
TGCCGCTGCTGATAAGGAAA+GGG	0.569825	5:+9010864	MsG0580024738.01.T01:CDS
GAGCCTTGCGGCTCTTGCGA+CGG	0.572981	5:-9010519	None:intergenic
CTTGCTTGATCGTAAGGCGA+AGG	0.575754	5:+9010837	MsG0580024738.01.T01:CDS
AACGCACGTTGTACTTTGAA+CGG	0.578356	5:-9010603	None:intergenic
GTGCCGCTGCTGATAAGGAA+AGG	0.578513	5:+9010863	MsG0580024738.01.T01:CDS
AGATTCGTTTGGATAAGGAT+AGG	0.578817	5:+9010809	MsG0580024738.01.T01:CDS
AACACGACGGACGCTTGATG+GGG	0.578903	5:-9010551	None:intergenic
TGAGAGGATTACACGTGAGA+AGG	0.580146	5:+9010732	MsG0580024738.01.T01:CDS
GATGAAGTTCAGGTAGTGAG+AGG	0.591688	5:+9010646	MsG0580024738.01.T01:CDS
CTTCAAGGGACGTGAAGGGA+AGG	0.593141	5:+9010672	MsG0580024738.01.T01:CDS
AGGTTGTGCAAGTTTATCGT+AGG	0.600876	5:+9010692	MsG0580024738.01.T01:CDS
TACCCTTTCCTTATCAGCAG+CGG	0.602566	5:-9010866	None:intergenic
GCTTTACCCCATAAATGCAA+AGG	0.611306	5:-9012459	None:intergenic
AATGGTCAAACTGTGAATGT+TGG	0.612366	5:+9010757	MsG0580024738.01.T01:CDS
TTGCTTGATCGTAAGGCGAA+GGG	0.621055	5:+9010838	MsG0580024738.01.T01:CDS
TATGGCTAGCTGGAGTGCAG+TGG	0.623203	5:-9011417	None:intergenic
GAACGGAGGTCACCGGAGAG+AGG	0.625041	5:-9010586	None:intergenic
GTAGTGAGAGGAACCTTCAA+GGG	0.634832	5:+9010658	MsG0580024738.01.T01:CDS
GAACCTTCAAGGGACGTGAA+GGG	0.643186	5:+9010668	MsG0580024738.01.T01:CDS
GCACGTTGTACTTTGAACGG+AGG	0.673729	5:-9010600	None:intergenic
GGGCGGTGAAATGAGCCTTG+CGG	0.681827	5:-9010531	None:intergenic
GTGCGCTCATCAAAACACGA+CGG	0.772319	5:-9010564	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTAATTATATTATTAATTT+TGG	+	Chr5:9010930-9010949	MsG0580024738.01.T01:intron	0.0%
!!	AAAATTAATTAAAATAGTCT+AGG	-	Chr5:9011539-9011558	None:intergenic	10.0%
!!!	AAATACTGTATTTTTTATTT+TGG	+	Chr5:9012221-9012240	MsG0580024738.01.T01:intron	10.0%
!!!	ACTATTTTAATTAATTTTAG+GGG	+	Chr5:9011541-9011560	MsG0580024738.01.T01:intron	10.0%
!!!	AGACTATTTTAATTAATTTT+AGG	+	Chr5:9011539-9011558	MsG0580024738.01.T01:intron	10.0%
!!!	GACTATTTTAATTAATTTTA+GGG	+	Chr5:9011540-9011559	MsG0580024738.01.T01:intron	10.0%
!!!	AACATAGTTTTTTTTTTTAG+AGG	+	Chr5:9011300-9011319	MsG0580024738.01.T01:intron	15.0%
!!!	GTTGAGTTTAAATAATTTTA+GGG	+	Chr5:9011241-9011260	MsG0580024738.01.T01:intron	15.0%
!!!	TAAGTTAAATAAAGTTTTTG+TGG	+	Chr5:9011590-9011609	MsG0580024738.01.T01:intron	15.0%
!!!	TGTTGAGTTTAAATAATTTT+AGG	+	Chr5:9011240-9011259	MsG0580024738.01.T01:intron	15.0%
!!!	TTGAGTTTAAATAATTTTAG+GGG	+	Chr5:9011242-9011261	MsG0580024738.01.T01:intron	15.0%
!!!	TGAAATTGGTTAATTTTAGA+TGG	+	Chr5:9011206-9011225	MsG0580024738.01.T01:intron	20.0%
!!!	TGAATTATTTGCAGAATTTT+GGG	+	Chr5:9011014-9011033	MsG0580024738.01.T01:intron	20.0%
!	AAGCTAAACATAGTTTATGT+AGG	+	Chr5:9011323-9011342	MsG0580024738.01.T01:intron	25.0%
!	AATGTTATATTGCACTTTAG+GGG	+	Chr5:9011485-9011504	MsG0580024738.01.T01:intron	25.0%
!	ATTGAACCATGAATAAATCA+AGG	-	Chr5:9011838-9011857	None:intergenic	25.0%
!	CAATGTTATATTGCACTTTA+GGG	+	Chr5:9011484-9011503	MsG0580024738.01.T01:intron	25.0%
!	CATATATTGTTATGTGCAAA+TGG	+	Chr5:9012331-9012350	MsG0580024738.01.T01:intron	25.0%
!	CCCTTAAAATTAACTAATTG+CGG	-	Chr5:9011511-9011530	None:intergenic	25.0%
!	TATACCTCTTCTATTAATTG+TGG	+	Chr5:9011126-9011145	MsG0580024738.01.T01:intron	25.0%
!	TCAATGTTATATTGCACTTT+AGG	+	Chr5:9011483-9011502	MsG0580024738.01.T01:intron	25.0%
!	TGTTATTCCTTTGCATTTAA+GGG	+	Chr5:9011170-9011189	MsG0580024738.01.T01:intron	25.0%
!	TTGAACCATGAATAAATCAA+GGG	-	Chr5:9011837-9011856	None:intergenic	25.0%
!!	CCGCAATTAGTTAATTTTAA+GGG	+	Chr5:9011508-9011527	MsG0580024738.01.T01:intron	25.0%
!!	CTGAATTATTTGCAGAATTT+TGG	+	Chr5:9011013-9011032	MsG0580024738.01.T01:intron	25.0%
!!	TGAAACTTTCACAACTTTTA+TGG	+	Chr5:9012074-9012093	MsG0580024738.01.T01:intron	25.0%
!!!	CTGCATTTAAGTTAGATTTT+CGG	+	Chr5:9011796-9011815	MsG0580024738.01.T01:intron	25.0%
	AACGTTAGACCAATAAGTTT+GGG	-	Chr5:9012388-9012407	None:intergenic	30.0%
	TCACTTGTATAGATTGAAAC+AGG	-	Chr5:9012168-9012187	None:intergenic	30.0%
	TGAACCATGAATAAATCAAG+GGG	-	Chr5:9011836-9011855	None:intergenic	30.0%
	TGAAGATAATTTGAGCAATG+TGG	+	Chr5:9012185-9012204	MsG0580024738.01.T01:intron	30.0%
	TTATCCCCTTGATTTATTCA+TGG	+	Chr5:9011829-9011848	MsG0580024738.01.T01:intron	30.0%
!	AAAGTTTTTGTGGAATAAGC+AGG	+	Chr5:9011600-9011619	MsG0580024738.01.T01:intron	30.0%
!	AAGTTTTTGTGGAATAAGCA+GGG	+	Chr5:9011601-9011620	MsG0580024738.01.T01:intron	30.0%
!	GCCGCAATTAGTTAATTTTA+AGG	+	Chr5:9011507-9011526	MsG0580024738.01.T01:intron	30.0%
!	GTGTTATTCCTTTGCATTTA+AGG	+	Chr5:9011169-9011188	MsG0580024738.01.T01:intron	30.0%
!	TTCCTAGAACTTGATTTTGT+TGG	+	Chr5:9010964-9010983	MsG0580024738.01.T01:intron	30.0%
!!	CAGGGTTGGTATTTATTTAT+AGG	+	Chr5:9011619-9011638	MsG0580024738.01.T01:intron	30.0%
!!	TGTGTTTTTGAATTAGAGCT+GGG	+	Chr5:9012285-9012304	MsG0580024738.01.T01:intron	30.0%
!!	TTGTGTTTTTGAATTAGAGC+TGG	+	Chr5:9012284-9012303	MsG0580024738.01.T01:intron	30.0%
	AACTTCATCATCCTTACGAA+CGG	-	Chr5:9010635-9010654	None:intergenic	35.0%
	AATGCAATATCACCCCAAAT+TGG	-	Chr5:9011769-9011788	None:intergenic	35.0%
	AATGGGTGATTCATATTGAG+AGG	+	Chr5:9010716-9010735	MsG0580024738.01.T01:CDS	35.0%
	AATGGTCAAACTGTGAATGT+TGG	+	Chr5:9010757-9010776	MsG0580024738.01.T01:CDS	35.0%
	AGATAGGATACTGTCTGAAA+TGG	+	Chr5:9011911-9011930	MsG0580024738.01.T01:intron	35.0%
	AGATTCGTTTGGATAAGGAT+AGG	+	Chr5:9010809-9010828	MsG0580024738.01.T01:CDS	35.0%
	ATCCTTATCCAAACGAATCT+TGG	-	Chr5:9010809-9010828	None:intergenic	35.0%
	ATGCAATATCACCCCAAATT+GGG	-	Chr5:9011768-9011787	None:intergenic	35.0%
	ATGTAGCTCCTTTGCATTTA+TGG	+	Chr5:9012451-9012470	MsG0580024738.01.T01:CDS	35.0%
	ATTACACGTGAGAAGGTTAA+TGG	+	Chr5:9010739-9010758	MsG0580024738.01.T01:CDS	35.0%
	CAACGTTAGACCAATAAGTT+TGG	-	Chr5:9012389-9012408	None:intergenic	35.0%
	CAAGCCACAATTAATAGAAG+AGG	-	Chr5:9011133-9011152	None:intergenic	35.0%
	CACCAACAAAATCAAGTTCT+AGG	-	Chr5:9010969-9010988	None:intergenic	35.0%
	CAGGGAAATGTAACTTAACT+GGG	+	Chr5:9012308-9012327	MsG0580024738.01.T01:intron	35.0%
	CCAATAAGTTTGGGAATAGT+CGG	-	Chr5:9012379-9012398	None:intergenic	35.0%
	CTATGTTGTCAATTGCTACT+TGG	+	Chr5:9011380-9011399	MsG0580024738.01.T01:intron	35.0%
	CTGTGAATTGTTCCCAATTT+GGG	+	Chr5:9011753-9011772	MsG0580024738.01.T01:intron	35.0%
	GAAAGTTTCATGTCAAGCAA+CGG	-	Chr5:9012064-9012083	None:intergenic	35.0%
	GCAAGTTTATCGTAGGAAAT+GGG	+	Chr5:9010699-9010718	MsG0580024738.01.T01:CDS	35.0%
	GCAGAGCTTATTGTTGAAAT+TGG	+	Chr5:9011192-9011211	MsG0580024738.01.T01:intron	35.0%
	GTTTACATGCTATGCTAGAT+AGG	+	Chr5:9011895-9011914	MsG0580024738.01.T01:intron	35.0%
	TACCAAGATTCGTTTGGATA+AGG	+	Chr5:9010804-9010823	MsG0580024738.01.T01:CDS	35.0%
	TGCAAGTTTATCGTAGGAAA+TGG	+	Chr5:9010698-9010717	MsG0580024738.01.T01:CDS	35.0%
	TGCGGTTTATGTCTTTGATT+TGG	+	Chr5:9012407-9012426	MsG0580024738.01.T01:CDS	35.0%
	TGTAGCTCCTTTGCATTTAT+GGG	+	Chr5:9012452-9012471	MsG0580024738.01.T01:CDS	35.0%
	TGTGAATTGTTCCCAATTTG+GGG	+	Chr5:9011754-9011773	MsG0580024738.01.T01:intron	35.0%
	TGTGATTACCAAGATTCGTT+TGG	+	Chr5:9010798-9010817	MsG0580024738.01.T01:CDS	35.0%
	TGTGCGATTGTTCTGATATT+GGG	-	Chr5:9011955-9011974	None:intergenic	35.0%
!	AACTTATTGGTCTAACGTTG+CGG	+	Chr5:9012389-9012408	MsG0580024738.01.T01:CDS	35.0%
!	ACGTTTTGCATAATGTCTTC+AGG	-	Chr5:9010903-9010922	None:intergenic	35.0%
!	CTAGAACTTGATTTTGTTGG+TGG	+	Chr5:9010967-9010986	MsG0580024738.01.T01:intron	35.0%
!	TCACAACTTTTATGGCAACA+TGG	+	Chr5:9012082-9012101	MsG0580024738.01.T01:intron	35.0%
!	TTGGTAATCACAACCTTTGA+AGG	-	Chr5:9010790-9010809	None:intergenic	35.0%
!!	TTGGTGGTTTGAATGTTTTG+TGG	+	Chr5:9010983-9011002	MsG0580024738.01.T01:intron	35.0%
	AACGCACGTTGTACTTTGAA+CGG	-	Chr5:9010606-9010625	None:intergenic	40.0%
	ACTTCATCATCCTTACGAAC+GGG	-	Chr5:9010634-9010653	None:intergenic	40.0%
	AGCTAGCCATATGGTATTCA+GGG	+	Chr5:9011429-9011448	MsG0580024738.01.T01:intron	40.0%
	AGGTTGTGCAAGTTTATCGT+AGG	+	Chr5:9010692-9010711	MsG0580024738.01.T01:CDS	40.0%
	CAAGCAATAGCTACACACAT+TGG	-	Chr5:9012257-9012276	None:intergenic	40.0%
	CCGACTATTCCCAAACTTAT+TGG	+	Chr5:9012376-9012395	MsG0580024738.01.T01:CDS	40.0%
	GCAGGGAAATGTAACTTAAC+TGG	+	Chr5:9012307-9012326	MsG0580024738.01.T01:intron	40.0%
	GCTGTGAATTGTTCCCAATT+TGG	+	Chr5:9011752-9011771	MsG0580024738.01.T01:intron	40.0%
	GCTTTACCCCATAAATGCAA+AGG	-	Chr5:9012462-9012481	None:intergenic	40.0%
	GTAGCTCCTTTGCATTTATG+GGG	+	Chr5:9012453-9012472	MsG0580024738.01.T01:CDS	40.0%
	GTGTGCGATTGTTCTGATAT+TGG	-	Chr5:9011956-9011975	None:intergenic	40.0%
	TCGTAAGGATGATGAAGTTC+AGG	+	Chr5:9010636-9010655	MsG0580024738.01.T01:CDS	40.0%
!	ATGTTAACTGTGATAGCGCT+TGG	+	Chr5:9011656-9011675	MsG0580024738.01.T01:intron	40.0%
!	GAAAAGCTTGCTTGATCGTA+AGG	+	Chr5:9010831-9010850	MsG0580024738.01.T01:CDS	40.0%
!	GCAAATGGTTGTTGCTTGTT+AGG	+	Chr5:9012346-9012365	MsG0580024738.01.T01:intron	40.0%
!	TTTTGAATTAGAGCTGGGCA+GGG	+	Chr5:9012290-9012309	MsG0580024738.01.T01:intron	40.0%
!	TTTTGTGGAATAAGCAGGGT+TGG	+	Chr5:9011605-9011624	MsG0580024738.01.T01:intron	40.0%
!	TTTTTGAATTAGAGCTGGGC+AGG	+	Chr5:9012289-9012308	MsG0580024738.01.T01:intron	40.0%
!!	ATAGCGTGCTTGTTGTTGAA+TGG	+	Chr5:9012019-9012038	MsG0580024738.01.T01:intron	40.0%
!!	TGTTGGTGTTGATCCTTCAA+AGG	+	Chr5:9010774-9010793	MsG0580024738.01.T01:CDS	40.0%
	AGCTCTGCCCTTAAATGCAA+AGG	-	Chr5:9011180-9011199	None:intergenic	45.0%
	CAGCTAGCCATATGGTATTC+AGG	+	Chr5:9011428-9011447	MsG0580024738.01.T01:intron	45.0%
	CAGTTGACACCATGTTCACT+CGG	-	Chr5:9011682-9011701	None:intergenic	45.0%
	CTGAATACCATATGGCTAGC+TGG	-	Chr5:9011430-9011449	None:intergenic	45.0%
	GATGAAGTTCAGGTAGTGAG+AGG	+	Chr5:9010646-9010665	MsG0580024738.01.T01:CDS	45.0%
	GCTAGCCATATGGTATTCAG+GGG	+	Chr5:9011430-9011449	MsG0580024738.01.T01:intron	45.0%
	GTAGTGAGAGGAACCTTCAA+GGG	+	Chr5:9010658-9010677	MsG0580024738.01.T01:CDS	45.0%
	TACCCTTTCCTTATCAGCAG+CGG	-	Chr5:9010869-9010888	None:intergenic	45.0%
	TACTGTCTTCTGTCTGTGCA+TGG	+	Chr5:9011866-9011885	MsG0580024738.01.T01:intron	45.0%
	TGAGAGGATTACACGTGAGA+AGG	+	Chr5:9010732-9010751	MsG0580024738.01.T01:CDS	45.0%
	TTGCTTGATCGTAAGGCGAA+GGG	+	Chr5:9010838-9010857	MsG0580024738.01.T01:CDS	45.0%
	AAAACACGACGGACGCTTGA+TGG	-	Chr5:9010556-9010575	None:intergenic	50.0%
	AAACACGACGGACGCTTGAT+GGG	-	Chr5:9010555-9010574	None:intergenic	50.0%
	AACACAGCACCTGCAGAACA+TGG	-	Chr5:9011725-9011744	None:intergenic	50.0%
	ACCTGCAGAACATGGATAGC+TGG	-	Chr5:9011717-9011736	None:intergenic	50.0%
	AGCCATATGGTATTCAGGGG+TGG	+	Chr5:9011433-9011452	MsG0580024738.01.T01:intron	50.0%
	CTTGCTTGATCGTAAGGCGA+AGG	+	Chr5:9010837-9010856	MsG0580024738.01.T01:CDS	50.0%
	GAACCTTCAAGGGACGTGAA+GGG	+	Chr5:9010668-9010687	MsG0580024738.01.T01:CDS	50.0%
	GCACGTTGTACTTTGAACGG+AGG	-	Chr5:9010603-9010622	None:intergenic	50.0%
	GGTAGTGAGAGGAACCTTCA+AGG	+	Chr5:9010657-9010676	MsG0580024738.01.T01:CDS	50.0%
	GTACTTTGAACGGAGGTCAC+CGG	-	Chr5:9010596-9010615	None:intergenic	50.0%
	GTATTCAGGGGTGGCATTTG+CGG	+	Chr5:9011442-9011461	MsG0580024738.01.T01:intron	50.0%
	GTGCGCTCATCAAAACACGA+CGG	-	Chr5:9010567-9010586	None:intergenic	50.0%
	TGCCACCCCTGAATACCATA+TGG	-	Chr5:9011438-9011457	None:intergenic	50.0%
	TGCCGCTGCTGATAAGGAAA+GGG	+	Chr5:9010864-9010883	MsG0580024738.01.T01:CDS	50.0%
	TGTCTTCTGTCTGTGCATGG+AGG	+	Chr5:9011869-9011888	MsG0580024738.01.T01:intron	50.0%
	TTCTGTCTGTGCATGGAGGT+AGG	+	Chr5:9011873-9011892	MsG0580024738.01.T01:intron	50.0%
!	GTCAATTGCTACTTGGCGAG+TGG	+	Chr5:9011387-9011406	MsG0580024738.01.T01:intron	50.0%
	AACACGACGGACGCTTGATG+GGG	-	Chr5:9010554-9010573	None:intergenic	55.0%
	CTGCACTCCAGCTAGCCATA+TGG	+	Chr5:9011420-9011439	MsG0580024738.01.T01:CDS	55.0%
	CTTCAAGGGACGTGAAGGGA+AGG	+	Chr5:9010672-9010691	MsG0580024738.01.T01:CDS	55.0%
	CTTCCCTTCACGTCCCTTGA+AGG	-	Chr5:9010674-9010693	None:intergenic	55.0%
	GACGGCTGCTTGAAACCCTA+GGG	-	Chr5:9010504-9010523	None:intergenic	55.0%
	GCCAGCTATCCATGTTCTGC+AGG	+	Chr5:9011713-9011732	MsG0580024738.01.T01:intron	55.0%
	GCGTTCTCTTCCCGTTCGTA+AGG	+	Chr5:9010621-9010640	MsG0580024738.01.T01:CDS	55.0%
	GGAACCTTCAAGGGACGTGA+AGG	+	Chr5:9010667-9010686	MsG0580024738.01.T01:CDS	55.0%
	TTGATGAGCGCACCTCTCTC+CGG	+	Chr5:9010574-9010593	MsG0580024738.01.T01:CDS	55.0%
!	GTGCCGCTGCTGATAAGGAA+AGG	+	Chr5:9010863-9010882	MsG0580024738.01.T01:CDS	55.0%
!	TATGGCTAGCTGGAGTGCAG+TGG	-	Chr5:9011420-9011439	None:intergenic	55.0%
	AGCGCTTGGCCGAGTGAACA+TGG	+	Chr5:9011670-9011689	MsG0580024738.01.T01:intron	60.0%
	CGACGGCTGCTTGAAACCCT+AGG	-	Chr5:9010505-9010524	None:intergenic	60.0%
	GGGCGGTGAAATGAGCCTTG+CGG	-	Chr5:9010534-9010553	None:intergenic	60.0%
	ACGACGGACGCTTGATGGGG+CGG	-	Chr5:9010551-9010570	None:intergenic	65.0%
	GAACGGAGGTCACCGGAGAG+AGG	-	Chr5:9010589-9010608	None:intergenic	65.0%
	GAGCCTTGCGGCTCTTGCGA+CGG	-	Chr5:9010522-9010541	None:intergenic	65.0%
!	GGGTCGTGCCGCTGCTGATA+AGG	+	Chr5:9010858-9010877	MsG0580024738.01.T01:CDS	65.0%
	CAGCCGTCGCAAGAGCCGCA+AGG	+	Chr5:9010516-9010535	MsG0580024738.01.T01:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	9010490	9012485	9010490	ID=MsG0580024738.01;Name=MsG0580024738.01
Chr5	mRNA	9010490	9012485	9010490	ID=MsG0580024738.01.T01;Parent=MsG0580024738.01;Name=MsG0580024738.01.T01;_AED=0.49;_eAED=0.63;_QI=0\|0\|0\|1\|1\|1\|3\|0\|182
Chr5	exon	9010490	9010885	9010490	ID=MsG0580024738.01.T01:exon:1014;Parent=MsG0580024738.01.T01
Chr5	exon	9011407	9011441	9011407	ID=MsG0580024738.01.T01:exon:1015;Parent=MsG0580024738.01.T01
Chr5	exon	9012368	9012485	9012368	ID=MsG0580024738.01.T01:exon:1016;Parent=MsG0580024738.01.T01
Chr5	CDS	9010490	9010885	9010490	ID=MsG0580024738.01.T01:cds;Parent=MsG0580024738.01.T01
Chr5	CDS	9011407	9011441	9011407	ID=MsG0580024738.01.T01:cds;Parent=MsG0580024738.01.T01
Chr5	CDS	9012368	9012485	9012368	ID=MsG0580024738.01.T01:cds;Parent=MsG0580024738.01.T01

Gene Sequence

>MsG0580024738.01.T01

ATGAAGTTCAACCCTAGGGTTTCAAGCAGCCGTCGCAAGAGCCGCAAGGCTCATTTCACCGCCCCATCAAGCGTCCGTCGTGTTTTGATGAGCGCACCTCTCTCCGGTGACCTCCGTTCAAAGTACAACGTGCGTTCTCTTCCCGTTCGTAAGGATGATGAAGTTCAGGTAGTGAGAGGAACCTTCAAGGGACGTGAAGGGAAGGTTGTGCAAGTTTATCGTAGGAAATGGGTGATTCATATTGAGAGGATTACACGTGAGAAGGTTAATGGTCAAACTGTGAATGTTGGTGTTGATCCTTCAAAGGTTGTGATTACCAAGATTCGTTTGGATAAGGATAGGAAAAGCTTGCTTGATCGTAAGGCGAAGGGTCGTGCCGCTGCTGATAAGGAAAGGTGGACAGTGTCCACTGCACTCCAGCTAGCCATATGGTATATGACCGACTATTCCCAAACTTATTGGTCTAACGTTGCGGTTTATGTCTTTGATTTGGCACATGTTTATTTTCTTAGTTATGTAGCTCCTTTGCATTTATGGGGTAAAGCTTAG

Protein sequence

>MsG0580024738.01.T01

MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSLPVRKDDEVQVVRGTFKGREGKVVQVYRRKWVIHIERITREKVNGQTVNVGVDPSKVVITKIRLDKDRKSLLDRKAKGRAAADKERWTVSTALQLAIWYMTDYSQTYWSNVAVYVFDLAHVYFLSYVAPLHLWGKA*