Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000960 | XP_003612215.2 | 88.442 | 796 | 36 | 6 | 1 | 742 | 1 | 794 | 0.0 | 1395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000960 | sp|Q7X659|VP35A_ARATH | 68.182 | 792 | 197 | 7 | 1 | 742 | 1 | 787 | 0.0 | 1053 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000960 | Msa0065680 | -0.810893 | 9.192435e-51 | -8.615850e-47 |
| Msa0000960 | Msa0232020 | 0.801136 | 1.038363e-48 | -8.615850e-47 |
| Msa0000960 | Msa0307310 | 0.819006 | 1.456659e-52 | -8.615850e-47 |
| Msa0000960 | Msa0483740 | 0.907067 | 7.555821e-81 | -8.615850e-47 |
| Msa0000960 | Msa0713510 | 0.800185 | 1.622939e-48 | -8.615850e-47 |
| Msa0000960 | Msa0713870 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
| Msa0000960 | Msa0741070 | 0.820487 | 6.683439e-53 | -8.615850e-47 |
| Msa0000960 | Msa0800310 | 0.982345 | 7.465843e-155 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000960 | MtrunA17_Chr5g0405801 | 88.442 | 796 | 36 | 6 | 1 | 742 | 1 | 794 | 0.0 | 1395 |
| Msa0000960 | MtrunA17_Chr1g0156861 | 69.221 | 796 | 186 | 8 | 1 | 742 | 1 | 791 | 0.0 | 1085 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000960 | AT2G17790.1 | 68.182 | 792 | 197 | 7 | 1 | 742 | 1 | 787 | 0.0 | 1053 |
| Msa0000960 | AT1G75850.1 | 67.047 | 789 | 209 | 6 | 3 | 742 | 4 | 790 | 0.0 | 1041 |
| Msa0000960 | AT3G51310.1 | 64.817 | 793 | 212 | 10 | 7 | 742 | 4 | 786 | 0.0 | 977 |
| Msa0000960 | AT1G75850.2 | 69.713 | 558 | 142 | 2 | 211 | 742 | 1 | 557 | 0.0 | 780 |
Find 177 sgRNAs with CRISPR-Local
Find 727 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAATTGCATTGCTTAATT+TGG | 0.084194 | 1_1:+2343617 | None:intergenic |
| AATTTAATTAATAGCCAATT+TGG | 0.112187 | 1_1:-2347903 | Msa0000960:five_prime_UTR |
| AGGCTTGCTGTCGGGCTTTC+TGG | 0.122684 | 1_1:-2344894 | Msa0000960:CDS |
| CTGCTTTGAATTGTCTTCTT+TGG | 0.167989 | 1_1:-2336702 | Msa0000960:three_prime_UTR |
| TATGCCTTAAGCGGGCTTTA+AGG | 0.189667 | 1_1:-2337179 | Msa0000960:CDS |
| TTGAAAGCCTTTCCATTAAC+TGG | 0.202513 | 1_1:+2343697 | None:intergenic |
| TGTTCATTTCTGTGAAATTT+TGG | 0.207828 | 1_1:+2345614 | None:intergenic |
| CTGGTCTGCAGGGGCCTTCC+CGG | 0.210811 | 1_1:-2344875 | Msa0000960:CDS |
| CAAAGGTATACACAGATTTA+TGG | 0.217403 | 1_1:-2336472 | Msa0000960:three_prime_UTR |
| ATGCTTGCTCACATTTGTTT+TGG | 0.257018 | 1_1:-2337908 | Msa0000960:CDS |
| GACAGTACTATCCCAGTTAA+TGG | 0.262602 | 1_1:-2343709 | Msa0000960:CDS |
| CATTCATAATTAACTCAATT+AGG | 0.271218 | 1_1:+2336930 | None:intergenic |
| ATTTAATTAATAGCCAATTT+GGG | 0.274260 | 1_1:-2347902 | Msa0000960:five_prime_UTR |
| AGCATTGTTTGAACTGATAA+AGG | 0.285330 | 1_1:-2340038 | Msa0000960:CDS |
| TGCAATCCATCAAGTAGAAT+TGG | 0.299727 | 1_1:+2344482 | None:intergenic |
| TGATCCAGAAGAGATGTTTA+AGG | 0.306305 | 1_1:-2339738 | Msa0000960:intron |
| AGTCAAGAAGAAAATCCTTT+TGG | 0.307658 | 1_1:-2338850 | Msa0000960:CDS |
| CCTTGACGTTCCAACTAATA+AGG | 0.309908 | 1_1:-2340210 | Msa0000960:CDS |
| GTTGGCCCAATTCTACTTGA+TGG | 0.310066 | 1_1:-2344488 | Msa0000960:CDS |
| CACAGAAATGAACAAACTTT+GGG | 0.324886 | 1_1:-2345605 | Msa0000960:CDS |
| ACAGCTATCCATTTGATAAT+AGG | 0.329025 | 1_1:-2338138 | Msa0000960:CDS |
| GATCATCATTATAAAACATT+TGG | 0.340860 | 1_1:+2339756 | None:intergenic |
| TCACAGAAATGAACAAACTT+TGG | 0.345532 | 1_1:-2345606 | Msa0000960:CDS |
| GGGCGCTTACCCTCAACTTC+AGG | 0.349713 | 1_1:-2344407 | Msa0000960:intron |
| AAGCCCGCTTAAGGCATAAT+AGG | 0.353896 | 1_1:+2337184 | None:intergenic |
| TGTCGGGCTTTCTGGTCTGC+AGG | 0.367999 | 1_1:-2344886 | Msa0000960:CDS |
| GGATCATCACATGAGCAAAT+TGG | 0.377606 | 1_1:+2336730 | None:intergenic |
| CTCACCTTAAACATCTCTTC+TGG | 0.378777 | 1_1:+2339734 | None:intergenic |
| AGTTACAGTTGCTGCTATCC+AGG | 0.385834 | 1_1:-2336954 | Msa0000960:CDS |
| TCCTGCTAAGGATGTTCTTA+AGG | 0.387412 | 1_1:-2346215 | Msa0000960:CDS |
| CAAACTCTTGATGTGCTGTT+GGG | 0.388585 | 1_1:-2344427 | Msa0000960:CDS |
| ATGTCTTCGGTGTTGAGAAC+AGG | 0.390066 | 1_1:-2338098 | Msa0000960:CDS |
| TTCCTCGCCGCCGGCATCGC+CGG | 0.392272 | 1_1:-2347693 | Msa0000960:CDS |
| TAAGAATAAGAATATGCTTA+TGG | 0.400405 | 1_1:+2347843 | None:intergenic |
| AACACAAACTTGTGGTTTCA+CGG | 0.401490 | 1_1:+2336672 | None:intergenic |
| AAGCTCGTAAAGATCAATAA+TGG | 0.401737 | 1_1:+2347219 | None:intergenic |
| AGACAATTCAAAGCAGTTGC+TGG | 0.402550 | 1_1:+2336709 | None:intergenic |
| GCATTGTTTGAACTGATAAA+GGG | 0.403489 | 1_1:-2340037 | Msa0000960:CDS |
| AAAGCATCTGCCGATGGATC+TGG | 0.409395 | 1_1:+2336884 | None:intergenic |
| TCCAAATTAAGCAATGCAAT+TGG | 0.414365 | 1_1:-2343618 | Msa0000960:CDS |
| GTTTGCAAATGGTACTCATC+AGG | 0.414564 | 1_1:+2344445 | None:intergenic |
| CAGCCTGACATGCCCACTGC+TGG | 0.415024 | 1_1:-2340749 | Msa0000960:CDS |
| CAGACCATCGAGACTCTGTT+AGG | 0.417291 | 1_1:-2338507 | Msa0000960:CDS |
| CTGAGTTGAGGCTTGCTGTC+GGG | 0.419435 | 1_1:-2344902 | Msa0000960:CDS |
| GAGGAACTTCTCTTCATCTT+CGG | 0.420874 | 1_1:+2347710 | None:intergenic |
| TCCACATGTCAAACCTTGAT+TGG | 0.421015 | 1_1:+2336791 | None:intergenic |
| CAATCCTTAAAGCCCGCTTA+AGG | 0.421497 | 1_1:+2337175 | None:intergenic |
| CTGTTGAAGTCCGGCGATGC+CGG | 0.421693 | 1_1:+2347683 | None:intergenic |
| TTTCTCGTTTCTCCTTCTCC+CGG | 0.421907 | 1_1:+2344856 | None:intergenic |
| GCAAACTCTTGATGTGCTGT+TGG | 0.425162 | 1_1:-2344428 | Msa0000960:CDS |
| TGGTCTGCAGGGGCCTTCCC+GGG | 0.427856 | 1_1:-2344874 | Msa0000960:CDS |
| GCAAAATGTTGCCGGCGTGC+TGG | 0.429765 | 1_1:+2347194 | None:intergenic |
| TTGGGTGCGGATGCAGCATC+AGG | 0.431226 | 1_1:-2345587 | Msa0000960:intron |
| ACTCCAGCAGTGGGCATGTC+AGG | 0.434101 | 1_1:+2340746 | None:intergenic |
| CGTTTCTCCTTCTCCCGGGA+AGG | 0.438675 | 1_1:+2344861 | None:intergenic |
| CAATCGCGGCAAAATGTTGC+CGG | 0.441838 | 1_1:+2347186 | None:intergenic |
| TGCAAATGCTGCACAACAAA+TGG | 0.444033 | 1_1:-2337154 | Msa0000960:CDS |
| CGAGACTCTGTTAGGTGTCC+TGG | 0.448133 | 1_1:-2338499 | Msa0000960:CDS |
| GTTGCCATGACCTTATTAGT+TGG | 0.450360 | 1_1:+2340200 | None:intergenic |
| TTCAAACTACCCTCGTGTAA+TGG | 0.463333 | 1_1:-2340237 | Msa0000960:CDS |
| GTCGGGCTTTCTGGTCTGCA+GGG | 0.464275 | 1_1:-2344885 | Msa0000960:CDS |
| GAAGAGTTCCTATTATCAAA+TGG | 0.465787 | 1_1:+2338130 | None:intergenic |
| TCATGTTCTCAGTCAGATAG+AGG | 0.467619 | 1_1:-2344684 | Msa0000960:CDS |
| TTTACTGTCTACAGTTGGTC+AGG | 0.469598 | 1_1:-2338894 | Msa0000960:intron |
| TCAGCATAATCTAGTCGATC+GGG | 0.469613 | 1_1:+2340677 | None:intergenic |
| TGAGAAATATGAACCAATCA+AGG | 0.471525 | 1_1:-2336804 | Msa0000960:CDS |
| AAGCATATTCTTATTCTTAG+CGG | 0.478257 | 1_1:-2347839 | Msa0000960:five_prime_UTR |
| TATCTTTACTTCTTTGAGAA+GGG | 0.481938 | 1_1:-2336986 | Msa0000960:CDS |
| CTTCAAAGGATGCATGTCTT+CGG | 0.482111 | 1_1:-2338111 | Msa0000960:CDS |
| GCAATCCATCAAGTAGAATT+GGG | 0.487567 | 1_1:+2344483 | None:intergenic |
| GCAGGGGCCTTCCCGGGAGA+AGG | 0.490072 | 1_1:-2344868 | Msa0000960:CDS |
| TACACAGCTCTGCATTGATC+TGG | 0.494461 | 1_1:+2337930 | None:intergenic |
| TTTACCTGCTCAAGTACTCT+AGG | 0.496535 | 1_1:+2344626 | None:intergenic |
| ACTGATAAAGGGGCTTATCA+AGG | 0.497046 | 1_1:-2340026 | Msa0000960:CDS |
| AATGAAGAGCATTACTGATC+CGG | 0.499744 | 1_1:+2337110 | None:intergenic |
| GATAGCTGTGACCTGTGCTC+TGG | 0.502526 | 1_1:+2338152 | None:intergenic |
| ATTCTACATGCACCGTGCAT+TGG | 0.505624 | 1_1:-2347655 | Msa0000960:intron |
| TGCGCGCATTTGATCAATTG+AGG | 0.507817 | 1_1:-2347285 | Msa0000960:CDS |
| GTATCTTTACTTCTTTGAGA+AGG | 0.508035 | 1_1:-2336987 | Msa0000960:CDS |
| CCGACAGCAAGCCTCAACTC+AGG | 0.510046 | 1_1:+2344903 | None:intergenic |
| TAATTAACTCAATTAGGCCC+TGG | 0.511873 | 1_1:+2336936 | None:intergenic |
| CCTGAGTTGAGGCTTGCTGT+CGG | 0.512700 | 1_1:-2344903 | Msa0000960:CDS |
| ACTGAAATGACCTCTTCATC+AGG | 0.513627 | 1_1:+2339989 | None:intergenic |
| TCCTTAAGAACATCCTTAGC+AGG | 0.514144 | 1_1:+2346214 | None:intergenic |
| TAGCAGCAACTGTAACTTGT+GGG | 0.515070 | 1_1:+2336960 | None:intergenic |
| ATTTGATCAATTGAGGAAGC+TGG | 0.517144 | 1_1:-2347278 | Msa0000960:CDS |
| GCAAAACGGGAGAAATTAAG+AGG | 0.520084 | 1_1:-2347868 | Msa0000960:five_prime_UTR |
| TTCTCGTTTCTCCTTCTCCC+GGG | 0.525927 | 1_1:+2344857 | None:intergenic |
| ACTTTAACTCACAAGGCCAC+AGG | 0.526213 | 1_1:-2338072 | Msa0000960:CDS |
| GAATGAATTCTGTTGAAGTC+CGG | 0.528606 | 1_1:+2347674 | None:intergenic |
| GGAGAAGGAGAAACGAGAAA+AGG | 0.529242 | 1_1:-2344853 | Msa0000960:CDS |
| TGAAAGCCTTTCCATTAACT+GGG | 0.530830 | 1_1:+2343698 | None:intergenic |
| AGATTATGCTGATCAAGTCT+TGG | 0.535438 | 1_1:-2340666 | Msa0000960:intron |
| GAAGAGAAGTTCCTCGCCGC+CGG | 0.535875 | 1_1:-2347702 | Msa0000960:CDS |
| ATGTCATTATATTTCTCTAG+TGG | 0.538353 | 1_1:+2340278 | None:intergenic |
| TTTAATTAATAGCCAATTTG+GGG | 0.539337 | 1_1:-2347901 | Msa0000960:five_prime_UTR |
| GATCATGATAACATGAAAGA+TGG | 0.539688 | 1_1:-2337879 | Msa0000960:CDS |
| GCACATCAAGAGTTTGCAAA+TGG | 0.543783 | 1_1:+2344434 | None:intergenic |
| GTGTTTGTTATGTTACACTT+TGG | 0.544738 | 1_1:-2336754 | Msa0000960:three_prime_UTR |
| AGGGTAGTTTGAAAGCTTCA+AGG | 0.545666 | 1_1:+2340247 | None:intergenic |
| AAACAAAAGGGTGGTACAGT+TGG | 0.548365 | 1_1:-2336827 | Msa0000960:CDS |
| GTCCGGCGATGCCGGCGGCG+AGG | 0.550071 | 1_1:+2347691 | None:intergenic |
| GTTGATGCATCATCTCCAAA+AGG | 0.553449 | 1_1:+2338835 | None:intergenic |
| GTTCCCTAACCTGAAGTTGA+GGG | 0.556360 | 1_1:+2344398 | None:intergenic |
| CACTGCAACTCCAGATCCAT+CGG | 0.556884 | 1_1:-2336894 | Msa0000960:CDS |
| ATCGAAGGAAGCTCCTGCTA+AGG | 0.560242 | 1_1:-2346227 | Msa0000960:CDS |
| CGTGAATTGCAAAGATGAGT+TGG | 0.561375 | 1_1:-2344506 | Msa0000960:CDS |
| AGGTATCTCCTCTGTACAGT+AGG | 0.562543 | 1_1:-2346265 | Msa0000960:CDS |
| CACAACTGCAATGCTAACTC+TGG | 0.562797 | 1_1:+2338474 | None:intergenic |
| TGATAATAGGAACTCTTCAA+AGG | 0.563619 | 1_1:-2338125 | Msa0000960:CDS |
| AATGCAGCACGAGGTAGCAC+CGG | 0.565115 | 1_1:-2337129 | Msa0000960:CDS |
| GAAGCTGGAGATGTTCTTCG+AGG | 0.574256 | 1_1:-2347263 | Msa0000960:CDS |
| AGGTAAAATTGAGGACAAGA+AGG | 0.574526 | 1_1:-2340333 | Msa0000960:CDS |
| ATCGAAGTTGAGAACTTCGC+CGG | 0.575166 | 1_1:-2347754 | Msa0000960:five_prime_UTR |
| GGCTTATCAAGGATTCTGAC+GGG | 0.575698 | 1_1:-2340015 | Msa0000960:CDS |
| AGTCCTATTATGCCTTAAGC+GGG | 0.575988 | 1_1:-2337187 | Msa0000960:CDS |
| CCTTATTAGTTGGAACGTCA+AGG | 0.577662 | 1_1:+2340210 | None:intergenic |
| CTCTGGCAAAGGTAAAATTG+AGG | 0.578328 | 1_1:-2340342 | Msa0000960:CDS |
| ATCAGCATAATCTAGTCGAT+CGG | 0.578728 | 1_1:+2340676 | None:intergenic |
| GGCTGCAAATGACTGTGAGT+TGG | 0.580108 | 1_1:-2338355 | Msa0000960:CDS |
| GCAATGCTAACTCTGGTGCC+AGG | 0.580206 | 1_1:+2338481 | None:intergenic |
| TTGAAGTCCGGCGATGCCGG+CGG | 0.582299 | 1_1:+2347686 | None:intergenic |
| TGTCTTCGGTGTTGAGAACA+GGG | 0.583710 | 1_1:-2338097 | Msa0000960:CDS |
| TTTGCAAATGGTACTCATCA+GGG | 0.584013 | 1_1:+2344446 | None:intergenic |
| CAACATCTTTGTACATCTCA+AGG | 0.584038 | 1_1:+2344654 | None:intergenic |
| CTTTAACTCACAAGGCCACA+GGG | 0.584542 | 1_1:-2338071 | Msa0000960:CDS |
| TAAAGTTACAACTCCAGCAG+TGG | 0.587524 | 1_1:+2340736 | None:intergenic |
| CATTGTTTGAACTGATAAAG+GGG | 0.590196 | 1_1:-2340036 | Msa0000960:CDS |
| TACGAGCTTGTCCAGCACGC+CGG | 0.590451 | 1_1:-2347205 | Msa0000960:CDS |
| TTATGCTGCTTCAAGTGCAG+AGG | 0.591369 | 1_1:-2343673 | Msa0000960:CDS |
| CGTTCCAACTAATAAGGTCA+TGG | 0.594538 | 1_1:-2340204 | Msa0000960:CDS |
| ATCTGTATACATCAAATCGA+AGG | 0.594866 | 1_1:-2346242 | Msa0000960:CDS |
| CGACAGCAAGCCTCAACTCA+GGG | 0.595611 | 1_1:+2344904 | None:intergenic |
| GCTTCCTAGAGTACTTGAGC+AGG | 0.596217 | 1_1:-2344630 | Msa0000960:intron |
| ATACCAGGATTCCAGAGCAC+AGG | 0.596376 | 1_1:-2338163 | Msa0000960:intron |
| CAGGGATACTTTAACTCACA+AGG | 0.597480 | 1_1:-2338079 | Msa0000960:CDS |
| TACTATCCCAGTTAATGGAA+AGG | 0.598378 | 1_1:-2343704 | Msa0000960:CDS |
| AATTGTTATACAGGTCATAG+AGG | 0.598940 | 1_1:-2340774 | Msa0000960:intron |
| GAGTCCTATTATGCCTTAAG+CGG | 0.599450 | 1_1:-2337188 | Msa0000960:CDS |
| GGGCTTATCAAGGATTCTGA+CGG | 0.602860 | 1_1:-2340016 | Msa0000960:CDS |
| TCGGGCTTTCTGGTCTGCAG+GGG | 0.603686 | 1_1:-2344884 | Msa0000960:CDS |
| TGACGGGACTCCTGATGAAG+AGG | 0.605204 | 1_1:-2339999 | Msa0000960:intron |
| CAAAGTTCGTAGTATTTGTG+AGG | 0.605691 | 1_1:+2347423 | None:intergenic |
| GTTACAGTTGCTGCTATCCA+GGG | 0.605864 | 1_1:-2336953 | Msa0000960:CDS |
| AAATGAACAAACTTTGGGTG+CGG | 0.606382 | 1_1:-2345600 | Msa0000960:CDS |
| AGTTCCCTAACCTGAAGTTG+AGG | 0.609828 | 1_1:+2344397 | None:intergenic |
| ATTAAGCAATGCAATTGGCA+AGG | 0.614576 | 1_1:-2343613 | Msa0000960:intron |
| GACACCTAACAGAGTCTCGA+TGG | 0.616245 | 1_1:+2338503 | None:intergenic |
| TCTTAGCTGACCCTGAGTTG+AGG | 0.619517 | 1_1:-2344914 | Msa0000960:intron |
| ATTATTCTAGTTGTGCACAA+AGG | 0.620310 | 1_1:-2336489 | Msa0000960:three_prime_UTR |
| CTGTATATAGCGCATAGTAG+TGG | 0.620971 | 1_1:+2336856 | None:intergenic |
| CATGTTCTCAGTCAGATAGA+GGG | 0.621850 | 1_1:-2344683 | Msa0000960:CDS |
| GCTAAGAAAGCATCTGCCGA+TGG | 0.622652 | 1_1:+2336878 | None:intergenic |
| ATATCATGAACACAAACTTG+TGG | 0.623862 | 1_1:+2336664 | None:intergenic |
| ACGGAGGAGTTACCAATGCA+CGG | 0.624713 | 1_1:+2347643 | None:intergenic |
| AGGAGAAACGAGAAAAGGAG+AGG | 0.627935 | 1_1:-2344848 | Msa0000960:CDS |
| AAAGTTACAACTCCAGCAGT+GGG | 0.628281 | 1_1:+2340737 | None:intergenic |
| GGATGAAGATGATTTCAAAG+AGG | 0.628375 | 1_1:-2339804 | Msa0000960:CDS |
| ACCAATCAAGGTTTGACATG+TGG | 0.632076 | 1_1:-2336792 | Msa0000960:exon |
| GTTGTGCTTGCAATGTGCTG+AGG | 0.641551 | 1_1:-2338457 | Msa0000960:intron |
| TTAATTAATAGCCAATTTGG+GGG | 0.645092 | 1_1:-2347900 | Msa0000960:five_prime_UTR |
| ATAACATGAAAGATGGAGAG+AGG | 0.651839 | 1_1:-2337872 | Msa0000960:intron |
| CAGTTGGTCAGGCAGTTGCA+AGG | 0.652495 | 1_1:-2338883 | Msa0000960:CDS |
| TTCGAGGAAGAGACTCGTCG+TGG | 0.654957 | 1_1:-2347247 | Msa0000960:CDS |
| AATAACACATACCTTGTCAG+AGG | 0.659815 | 1_1:+2340133 | None:intergenic |
| CCGGAGAAAATGATGCTCGA+CGG | 0.665622 | 1_1:-2347735 | Msa0000960:exon |
| ATAGCAGCAACTGTAACTTG+TGG | 0.666553 | 1_1:+2336959 | None:intergenic |
| ACGCATTTCTACCTCTGACA+AGG | 0.688272 | 1_1:-2340144 | Msa0000960:intron |
| CATAATCTAGTCGATCGGGG+TGG | 0.695269 | 1_1:+2340681 | None:intergenic |
| CAAATGGCAAATGCAGCACG+AGG | 0.695757 | 1_1:-2337138 | Msa0000960:CDS |
| CAGCATAATCTAGTCGATCG+GGG | 0.697857 | 1_1:+2340678 | None:intergenic |
| TCAAGGAATTCCATTACACG+AGG | 0.703879 | 1_1:+2340227 | None:intergenic |
| TCTAGCGCCACTTACAATCG+CGG | 0.707563 | 1_1:+2347172 | None:intergenic |
| GAATTCAATAATCACCCCTG+TGG | 0.722096 | 1_1:+2338056 | None:intergenic |
| TTTAACTCACAAGGCCACAG+GGG | 0.727627 | 1_1:-2338070 | Msa0000960:intron |
| ATACAGATCCTACTGTACAG+AGG | 0.740473 | 1_1:+2346257 | None:intergenic |
| CAAGGAATTCCATTACACGA+GGG | 0.748600 | 1_1:+2340228 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACTTAGAAAAAAAA+AGG | + | chr1_1:2338552-2338571 | None:intergenic | 10.0% |
| !! | ATAAAATTGTAATAGATATT+TGG | + | chr1_1:2340565-2340584 | None:intergenic | 10.0% |
| !!! | TTCAAATTTTTAATATAAAC+TGG | - | chr1_1:2342460-2342479 | Msa0000960:intron | 10.0% |
| !!! | TCAAATTTTTAATATAAACT+GGG | - | chr1_1:2342461-2342480 | Msa0000960:intron | 10.0% |
| !! | AAAAAATGATTAGAAAAAAA+TGG | + | chr1_1:2342903-2342922 | None:intergenic | 10.0% |
| !!! | ATTAACATTTTAAATAAAAC+AGG | + | chr1_1:2343108-2343127 | None:intergenic | 10.0% |
| !!! | TTATTGATTATTTTCATTTA+AGG | - | chr1_1:2343932-2343951 | Msa0000960:intron | 10.0% |
| !! | AAATATTAAATTATTTCACT+GGG | + | chr1_1:2345445-2345464 | None:intergenic | 10.0% |
| !! | TAAATATTAAATTATTTCAC+TGG | + | chr1_1:2345446-2345465 | None:intergenic | 10.0% |
| !! | TTATAAATAAATAAAAGAAC+CGG | + | chr1_1:2345622-2345641 | None:intergenic | 10.0% |
| !!! | TTTTTCATGATAAAAATTTA+TGG | - | chr1_1:2346155-2346174 | Msa0000960:intron | 10.0% |
| !! | AATTTAATTAATAGCCAATT+TGG | - | chr1_1:2336471-2336490 | Msa0000960:three_prime_UTR | 15.0% |
| !! | ATTTAATTAATAGCCAATTT+GGG | - | chr1_1:2336472-2336491 | Msa0000960:three_prime_UTR | 15.0% |
| !!! | GATATTTTATGATTATGATT+AGG | - | chr1_1:2338089-2338108 | Msa0000960:CDS | 15.0% |
| !!! | ATTAATTAACAAGTTTTCAT+TGG | - | chr1_1:2340179-2340198 | Msa0000960:CDS | 15.0% |
| !!! | ACAAATTTAGAATTATTGAA+TGG | + | chr1_1:2340278-2340297 | None:intergenic | 15.0% |
| !!! | TATTGATATTTATGCTTTTA+AGG | - | chr1_1:2340400-2340419 | Msa0000960:intron | 15.0% |
| !! | TAAATAGAGCTTATAAATAT+TGG | - | chr1_1:2341349-2341368 | Msa0000960:intron | 15.0% |
| !! | ATCTAGTATTAGTATAAATA+TGG | + | chr1_1:2341484-2341503 | None:intergenic | 15.0% |
| !! | ATCTAGTATTAGTATAAATA+TGG | + | chr1_1:2341484-2341503 | None:intergenic | 15.0% |
| !! | ATATTCCAAAACTATAATAA+TGG | + | chr1_1:2342672-2342691 | None:intergenic | 15.0% |
| !! | AATGAAATAAATAATGTCAA+AGG | + | chr1_1:2343813-2343832 | None:intergenic | 15.0% |
| !! | TTATTTATTTCATTAACTCA+TGG | - | chr1_1:2343819-2343838 | Msa0000960:intron | 15.0% |
| !! | TTAATTATTTATACGCAATT+AGG | + | chr1_1:2345664-2345683 | None:intergenic | 15.0% |
| !!! | ATTTTTATCATGAAAAAAAG+AGG | + | chr1_1:2346152-2346171 | None:intergenic | 15.0% |
| !! | TTTAATTAATAGCCAATTTG+GGG | - | chr1_1:2336473-2336492 | Msa0000960:three_prime_UTR | 20.0% |
| !! | TAAGAATAAGAATATGCTTA+TGG | + | chr1_1:2336534-2336553 | None:intergenic | 20.0% |
| !!! | TTTTTTAACTGTTTGTTCAA+CGG | + | chr1_1:2336590-2336609 | None:intergenic | 20.0% |
| !! | CTGAACAGTTTATATAATAA+AGG | + | chr1_1:2337246-2337265 | None:intergenic | 20.0% |
| !! | ATTATATAAACTGTTCAGAT+AGG | - | chr1_1:2337248-2337267 | Msa0000960:intron | 20.0% |
| !!! | CTATTTAGAGATATTTTTAC+CGG | - | chr1_1:2337289-2337308 | Msa0000960:intron | 20.0% |
| !!! | AAATATTTGTTTTTACCAAC+CGG | + | chr1_1:2337311-2337330 | None:intergenic | 20.0% |
| !!! | TCAAAAATCAATCTAGAATT+AGG | + | chr1_1:2337384-2337403 | None:intergenic | 20.0% |
| !! | ATTTACTAAATAGTATATCG+CGG | + | chr1_1:2337532-2337551 | None:intergenic | 20.0% |
| !! | AGTGAGATAATAAATTAGTT+TGG | + | chr1_1:2338457-2338476 | None:intergenic | 20.0% |
| !! | TATTGGAGTCATTATAATAT+TGG | - | chr1_1:2338509-2338528 | Msa0000960:intron | 20.0% |
| !! | AAAAAAAAAGGAAATGAAGA+GGG | + | chr1_1:2338540-2338559 | None:intergenic | 20.0% |
| !! | AATTTAGTAACTTCTGTTAA+TGG | + | chr1_1:2338939-2338958 | None:intergenic | 20.0% |
| !! | TATATTAAAATACAACAAGC+TGG | + | chr1_1:2339028-2339047 | None:intergenic | 20.0% |
| !! | TCAGTTTATTAGATCTATTT+AGG | - | chr1_1:2339298-2339317 | Msa0000960:intron | 20.0% |
| !! | TTTATCCTTGATACATTATT+AGG | - | chr1_1:2339654-2339673 | Msa0000960:intron | 20.0% |
| !!! | CATTTTTTAAATACTACTTC+TGG | - | chr1_1:2340002-2340021 | Msa0000960:CDS | 20.0% |
| !!! | GTATTTTTAGCAAAATTTTG+GGG | + | chr1_1:2340253-2340272 | None:intergenic | 20.0% |
| !!! | CGTATTTTTAGCAAAATTTT+GGG | + | chr1_1:2340254-2340273 | None:intergenic | 20.0% |
| !!! | ACGTATTTTTAGCAAAATTT+TGG | + | chr1_1:2340255-2340274 | None:intergenic | 20.0% |
| !!! | GCTTTGTTTTAATATCAAAT+AGG | + | chr1_1:2341455-2341474 | None:intergenic | 20.0% |
| !! | TTCCTAATAGTTACTAATTA+TGG | - | chr1_1:2341556-2341575 | Msa0000960:intron | 20.0% |
| !! | TTCCATAATTAGTAACTATT+AGG | + | chr1_1:2341561-2341580 | None:intergenic | 20.0% |
| !! | AACTCGAAAATAGTTTATTT+CGG | + | chr1_1:2341773-2341792 | None:intergenic | 20.0% |
| !!! | AAATAAACTATTTTCGAGTT+AGG | - | chr1_1:2341773-2341792 | Msa0000960:intron | 20.0% |
| !!! | TATTAAAAAATAGTTGGTGA+GGG | + | chr1_1:2342291-2342310 | None:intergenic | 20.0% |
| !!! | TTATTAAAAAATAGTTGGTG+AGG | + | chr1_1:2342292-2342311 | None:intergenic | 20.0% |
| !! | GAGAGTTATTAAAAAATAGT+TGG | + | chr1_1:2342297-2342316 | None:intergenic | 20.0% |
| !! | TTATTAATGTGTTAATTGTG+TGG | - | chr1_1:2342357-2342376 | Msa0000960:intron | 20.0% |
| !! | AAAATGGAGAAAACAAAAAA+AGG | + | chr1_1:2342887-2342906 | None:intergenic | 20.0% |
| !!! | CTCTGTTTTTTTATTAACAT+TGG | - | chr1_1:2342927-2342946 | Msa0000960:intron | 20.0% |
| !!! | TGTTTTTTTATTAACATTGG+TGG | - | chr1_1:2342930-2342949 | Msa0000960:intron | 20.0% |
| !!! | ATTCAAAGCATTATGAAAAA+TGG | - | chr1_1:2344204-2344223 | Msa0000960:intron | 20.0% |
| !! | GTACAACATTTGATTATTTA+AGG | + | chr1_1:2344466-2344485 | None:intergenic | 20.0% |
| !! | TTGTACATTTCAATTAAAGT+AGG | - | chr1_1:2344480-2344499 | Msa0000960:CDS | 20.0% |
| !! | GATCATCATTATAAAACATT+TGG | + | chr1_1:2344621-2344640 | None:intergenic | 20.0% |
| !! | TTTAAAGAAGAAAACATAAG+AGG | + | chr1_1:2344881-2344900 | None:intergenic | 20.0% |
| !!! | TCTTATGTTTTCTTCTTTAA+AGG | - | chr1_1:2344880-2344899 | Msa0000960:CDS | 20.0% |
| !! | ATTGCAAGATGATAATTTAA+TGG | - | chr1_1:2345075-2345094 | Msa0000960:intron | 20.0% |
| !! | TTGCAAGATGATAATTTAAT+GGG | - | chr1_1:2345076-2345095 | Msa0000960:intron | 20.0% |
| !! | TCATTCATTGAAGTTTAAAA+TGG | + | chr1_1:2345176-2345195 | None:intergenic | 20.0% |
| !!! | ATTTTAAACTTCAATGAATG+AGG | - | chr1_1:2345175-2345194 | Msa0000960:intron | 20.0% |
| !!! | TCATATTTTTTTTTATGCTG+TGG | - | chr1_1:2345340-2345359 | Msa0000960:intron | 20.0% |
| !! | ATCAAAAAAAATCATAGACA+CGG | + | chr1_1:2345370-2345389 | None:intergenic | 20.0% |
| !! | TTAATTGTTTACTAATATCG+AGG | - | chr1_1:2345680-2345699 | Msa0000960:intron | 20.0% |
| !!! | TTATGTGTAATTGATTTGAT+TGG | - | chr1_1:2345809-2345828 | Msa0000960:intron | 20.0% |
| !!! | ATTTATTTTTTCTTCCGTTA+AGG | - | chr1_1:2345998-2346017 | Msa0000960:intron | 20.0% |
| !!! | CTTATTTTGAATATCCTTTT+TGG | - | chr1_1:2346379-2346398 | Msa0000960:intron | 20.0% |
| !! | CATTCATAATTAACTCAATT+AGG | + | chr1_1:2347447-2347466 | None:intergenic | 20.0% |
| !!! | ATGTTAATTTTGTAGAGAAA+AGG | + | chr1_1:2347823-2347842 | None:intergenic | 20.0% |
| !!! | TTTTTGTTCGTATTTTTTAG+CGG | - | chr1_1:2347958-2347977 | Msa0000960:five_prime_UTR | 20.0% |
| ! | TTAATTAATAGCCAATTTGG+GGG | - | chr1_1:2336474-2336493 | Msa0000960:three_prime_UTR | 25.0% |
| ! | AAGCATATTCTTATTCTTAG+CGG | - | chr1_1:2336535-2336554 | Msa0000960:three_prime_UTR | 25.0% |
| ! | TCTTTGAATTTCAATCGATT+TGG | - | chr1_1:2336823-2336842 | Msa0000960:CDS | 25.0% |
| ! | CGGTAAAAATATCTCTAAAT+AGG | + | chr1_1:2337291-2337310 | None:intergenic | 25.0% |
| !!! | TCTAGATTGATTTTTGAACA+CGG | - | chr1_1:2337387-2337406 | Msa0000960:intron | 25.0% |
| !!! | GAATTTTAAGAATCCACTAT+CGG | - | chr1_1:2337588-2337607 | Msa0000960:intron | 25.0% |
| ! | TTGTACTAAATAGTGTATCA+TGG | + | chr1_1:2337771-2337790 | None:intergenic | 25.0% |
| ! | ATCAGTAACATTAATTACAC+CGG | + | chr1_1:2337928-2337947 | None:intergenic | 25.0% |
| !! | AAACAAGAAGCATACTAAAT+AGG | + | chr1_1:2338067-2338086 | None:intergenic | 25.0% |
| ! | GATATAACTAAAAGAAGAGA+TGG | + | chr1_1:2338407-2338426 | None:intergenic | 25.0% |
| !!! | TCTCTTCTTTTAGTTATATC+TGG | - | chr1_1:2338407-2338426 | Msa0000960:intron | 25.0% |
| ! | AAAAAAAAGGAAATGAAGAG+GGG | + | chr1_1:2338539-2338558 | None:intergenic | 25.0% |
| ! | GAAAAAAAAAGGAAATGAAG+AGG | + | chr1_1:2338541-2338560 | None:intergenic | 25.0% |
| !! | TGTTCATTTCTGTGAAATTT+TGG | + | chr1_1:2338763-2338782 | None:intergenic | 25.0% |
| ! | TACTAAATTGAACTGTCATT+TGG | - | chr1_1:2338950-2338969 | Msa0000960:intron | 25.0% |
| ! | TTCTTAAAAACGTAACAGTT+TGG | - | chr1_1:2339274-2339293 | Msa0000960:intron | 25.0% |
| !! | TTTTTAAATACTACTTCTGG+AGG | - | chr1_1:2340005-2340024 | Msa0000960:CDS | 25.0% |
| ! | TCGAAAATTAGAGAAAGTAA+AGG | - | chr1_1:2340144-2340163 | Msa0000960:intron | 25.0% |
| ! | GTAAAAAAATCTGCAAATGA+AGG | + | chr1_1:2340349-2340368 | None:intergenic | 25.0% |
| ! | TTTCATGTTATGTTATGATC+TGG | - | chr1_1:2340377-2340396 | Msa0000960:intron | 25.0% |
| !!! | ACTTTAACTTCTAAAGTAAC+AGG | + | chr1_1:2340497-2340516 | None:intergenic | 25.0% |
| !!! | TTTTATTTTGCAAATCCAGT+AGG | - | chr1_1:2340579-2340598 | Msa0000960:intron | 25.0% |
| ! | TCACTTAAAAATTTCCTGTT+GGG | + | chr1_1:2340973-2340992 | None:intergenic | 25.0% |
| ! | ATCACTTAAAAATTTCCTGT+TGG | + | chr1_1:2340974-2340993 | None:intergenic | 25.0% |
| !!! | TTGCTTGTTCTTCTATTTTT+AGG | - | chr1_1:2341060-2341079 | Msa0000960:intron | 25.0% |
| !! | TTTAGGATTGATGAAATTGT+AGG | - | chr1_1:2341077-2341096 | Msa0000960:intron | 25.0% |
| ! | TTAGGATTGATGAAATTGTA+GGG | - | chr1_1:2341078-2341097 | Msa0000960:intron | 25.0% |
| ! | TATACCCAATAAGAACAAAA+CGG | - | chr1_1:2341410-2341429 | Msa0000960:intron | 25.0% |
| !!! | TTATCCGTTTTGTTCTTATT+GGG | + | chr1_1:2341417-2341436 | None:intergenic | 25.0% |
| !!! | ATTATCCGTTTTGTTCTTAT+TGG | + | chr1_1:2341418-2341437 | None:intergenic | 25.0% |
| ! | TGATCTTGGATGTTTATTTA+TGG | - | chr1_1:2341737-2341756 | Msa0000960:intron | 25.0% |
| ! | GATCTTGGATGTTTATTTAT+GGG | - | chr1_1:2341738-2341757 | Msa0000960:intron | 25.0% |
| ! | ACTCGAAAATAGTTTATTTC+GGG | + | chr1_1:2341772-2341791 | None:intergenic | 25.0% |
| !!! | AGTTAATTTGTTTCTGTCTT+AGG | - | chr1_1:2341983-2342002 | Msa0000960:intron | 25.0% |
| !!! | GTTAATTTGTTTCTGTCTTA+GGG | - | chr1_1:2341984-2342003 | Msa0000960:intron | 25.0% |
| !!! | TTAATTTGTTTCTGTCTTAG+GGG | - | chr1_1:2341985-2342004 | Msa0000960:intron | 25.0% |
| ! | AAAATTGGGTTTCATAAAAG+TGG | - | chr1_1:2342177-2342196 | Msa0000960:intron | 25.0% |
| ! | TGTGTGGAATTTATCAAATT+TGG | - | chr1_1:2342373-2342392 | Msa0000960:intron | 25.0% |
| ! | GTGTGGAATTTATCAAATTT+GGG | - | chr1_1:2342374-2342393 | Msa0000960:intron | 25.0% |
| !! | AACTATAATAATGGAGGAAA+TGG | + | chr1_1:2342663-2342682 | None:intergenic | 25.0% |
| !! | TTCCTCCATTATTATAGTTT+TGG | - | chr1_1:2342664-2342683 | Msa0000960:intron | 25.0% |
| ! | TTCCAAAACTATAATAATGG+AGG | + | chr1_1:2342669-2342688 | None:intergenic | 25.0% |
| !! | TGAAGTTTGTAAATGTTTTG+GGG | + | chr1_1:2342741-2342760 | None:intergenic | 25.0% |
| !! | CTGAAGTTTGTAAATGTTTT+GGG | + | chr1_1:2342742-2342761 | None:intergenic | 25.0% |
| !! | ACTGAAGTTTGTAAATGTTT+TGG | + | chr1_1:2342743-2342762 | None:intergenic | 25.0% |
| ! | ACATTTACAAACTTCAGTAA+TGG | - | chr1_1:2342745-2342764 | Msa0000960:intron | 25.0% |
| !!! | TTTTATTAACATTGGTGGTT+TGG | - | chr1_1:2342935-2342954 | Msa0000960:intron | 25.0% |
| !! | TTTATTAACATTGGTGGTTT+GGG | - | chr1_1:2342936-2342955 | Msa0000960:intron | 25.0% |
| !! | TCCTTTTCTTTATCTATACT+GGG | + | chr1_1:2342982-2343001 | None:intergenic | 25.0% |
| !! | ATCCTTTTCTTTATCTATAC+TGG | + | chr1_1:2342983-2343002 | None:intergenic | 25.0% |
| !! | ATGTGTTTTCAAAGTGTAAT+TGG | - | chr1_1:2343126-2343145 | Msa0000960:intron | 25.0% |
| ! | AAATTGTGATTCTTAAGATC+AGG | + | chr1_1:2343211-2343230 | None:intergenic | 25.0% |
| !!! | AATCACAATTTTGACAACAT+TGG | - | chr1_1:2343220-2343239 | Msa0000960:intron | 25.0% |
| ! | TATTTATGTCTATGCATATG+TGG | - | chr1_1:2343312-2343331 | Msa0000960:intron | 25.0% |
| ! | GAATCTTCAATAAGTTAACA+TGG | + | chr1_1:2343764-2343783 | None:intergenic | 25.0% |
| ! | ATGTCATTATATTTCTCTAG+TGG | + | chr1_1:2344099-2344118 | None:intergenic | 25.0% |
| !!! | GTATGTGTTATTTTACTTTC+TGG | - | chr1_1:2344252-2344271 | Msa0000960:intron | 25.0% |
| !!! | AGCTTTTTTTTAACAAAGCT+TGG | - | chr1_1:2344297-2344316 | Msa0000960:intron | 25.0% |
| !!! | GAGAAAGTATCACAAAAATA+AGG | + | chr1_1:2344516-2344535 | None:intergenic | 25.0% |
| !!! | TGTTTTCTTCTTTAAAGGTT+TGG | - | chr1_1:2344885-2344904 | Msa0000960:CDS | 25.0% |
| !! | TTACATTGTTTGTTGCTTAA+TGG | - | chr1_1:2344950-2344969 | Msa0000960:intron | 25.0% |
| ! | TCAAAAAAAATCATAGACAC+GGG | + | chr1_1:2345369-2345388 | None:intergenic | 25.0% |
| !! | AAAAGCTGAAAGATTTTCTT+TGG | + | chr1_1:2345569-2345588 | None:intergenic | 25.0% |
| ! | TTATTTATACGCAATTAGGT+TGG | + | chr1_1:2345660-2345679 | None:intergenic | 25.0% |
| ! | GTAAAAAATTCATATGCAAC+AGG | + | chr1_1:2346047-2346066 | None:intergenic | 25.0% |
| !!! | TGAATTCTTTTATTTAGCAG+TGG | - | chr1_1:2346334-2346353 | Msa0000960:intron | 25.0% |
| !! | TAGGAAATCTTAAACTTTTC+AGG | - | chr1_1:2346556-2346575 | Msa0000960:intron | 25.0% |
| ! | TCTACAACTATAGGATTATT+TGG | + | chr1_1:2346691-2346710 | None:intergenic | 25.0% |
| !! | TAGGAAATCTTAAACTTTTC+AGG | - | chr1_1:2346556-2346575 | Msa0000960:intron | 25.0% |
| ! | AAAATGGTATAGACAACAAT+AGG | + | chr1_1:2346895-2346914 | None:intergenic | 25.0% |
| !!! | TTGTTGTCTATACCATTTTT+CGG | - | chr1_1:2346896-2346915 | Msa0000960:intron | 25.0% |
| ! | TCAAAGTTTGAAAAGGAATA+TGG | - | chr1_1:2347087-2347106 | Msa0000960:intron | 25.0% |
| !! | TATCTTTACTTCTTTGAGAA+GGG | - | chr1_1:2347388-2347407 | Msa0000960:intron | 25.0% |
| ! | TATACAGTTCCAAAAACAAA+AGG | - | chr1_1:2347534-2347553 | Msa0000960:intron | 25.0% |
| ! | ATACAGTTCCAAAAACAAAA+GGG | - | chr1_1:2347535-2347554 | Msa0000960:intron | 25.0% |
| ! | AAAAAGTTGATTCACTCGTA+AGG | + | chr1_1:2336426-2336445 | None:intergenic | 30.0% |
| AGAATAAGGTTAGGGTTTAA+CGG | + | chr1_1:2336753-2336772 | None:intergenic | 30.0% | |
| AAGAAGAGAGAATAAGGTTA+GGG | + | chr1_1:2336761-2336780 | None:intergenic | 30.0% | |
| GAAATGAAGAAGAGAGAATA+AGG | + | chr1_1:2336767-2336786 | None:intergenic | 30.0% | |
| ACGAATCGGAAAATGAAAAT+CGG | + | chr1_1:2336851-2336870 | None:intergenic | 30.0% | |
| ACAAATTCACAAGATGAAAG+TGG | + | chr1_1:2337002-2337021 | None:intergenic | 30.0% | |
| AAGCTCGTAAAGATCAATAA+TGG | + | chr1_1:2337158-2337177 | None:intergenic | 30.0% | |
| !! | TTAGAGATATTTTTACCGGT+TGG | - | chr1_1:2337293-2337312 | Msa0000960:intron | 30.0% |
| ! | ACTAATTTTCACTGTTGTGT+CGG | + | chr1_1:2337335-2337354 | None:intergenic | 30.0% |
| AGAATTAGGAAAAACGTACT+CGG | + | chr1_1:2337370-2337389 | None:intergenic | 30.0% | |
| ! | CAATCTAAAGCTAAGTGATT+AGG | + | chr1_1:2337442-2337461 | None:intergenic | 30.0% |
| ! | TATTTTGTCAACGTGAATGA+CGG | - | chr1_1:2337668-2337687 | Msa0000960:intron | 30.0% |
| TCAGTAACATTAATTACACC+GGG | + | chr1_1:2337927-2337946 | None:intergenic | 30.0% | |
| AATTAATGTTACTGATGCCT+TGG | - | chr1_1:2337932-2337951 | Msa0000960:CDS | 30.0% | |
| ! | GCATATGTTATATGTCCTTT+TGG | - | chr1_1:2337954-2337973 | Msa0000960:CDS | 30.0% |
| TTCTCCTCAAAAAATAGCAT+GGG | + | chr1_1:2337990-2338009 | None:intergenic | 30.0% | |
| !!! | ATGCTATTTTTTGAGGAGAA+GGG | - | chr1_1:2337990-2338009 | Msa0000960:intron | 30.0% |
| ATCTGTATACATCAAATCGA+AGG | - | chr1_1:2338132-2338151 | Msa0000960:CDS | 30.0% | |
| TTATCTTTCTCAAGTTAGCA+AGG | - | chr1_1:2338240-2338259 | Msa0000960:intron | 30.0% | |
| TGATCAACGTTGTAAACTAT+TGG | - | chr1_1:2338492-2338511 | Msa0000960:CDS | 30.0% | |
| ! | TCTACATTTGTCTTGATGAT+TGG | - | chr1_1:2338623-2338642 | Msa0000960:intron | 30.0% |
| ! | CTACATTTGTCTTGATGATT+GGG | - | chr1_1:2338624-2338643 | Msa0000960:intron | 30.0% |
| TTAAGATTGAACCTGATATG+TGG | - | chr1_1:2338676-2338695 | Msa0000960:intron | 30.0% | |
| TCACAGAAATGAACAAACTT+TGG | - | chr1_1:2338768-2338787 | Msa0000960:intron | 30.0% | |
| CACAGAAATGAACAAACTTT+GGG | - | chr1_1:2338769-2338788 | Msa0000960:intron | 30.0% | |
| !!! | TTTTTTCATGAACCATGAAC+AGG | + | chr1_1:2338870-2338889 | None:intergenic | 30.0% |
| ! | ATTGAACTGTCATTTGGTAA+TGG | - | chr1_1:2338956-2338975 | Msa0000960:intron | 30.0% |
| ATAATAGTTGCATGTCATGA+AGG | - | chr1_1:2339387-2339406 | Msa0000960:intron | 30.0% | |
| TAATAGTTGCATGTCATGAA+GGG | - | chr1_1:2339388-2339407 | Msa0000960:intron | 30.0% | |
| CATGATCAAATGCTTATAGA+AGG | - | chr1_1:2339618-2339637 | Msa0000960:intron | 30.0% | |
| TCCTTGATACATTATTAGGT+TGG | - | chr1_1:2339658-2339677 | Msa0000960:intron | 30.0% | |
| CCTTGATACATTATTAGGTT+GGG | - | chr1_1:2339659-2339678 | Msa0000960:intron | 30.0% | |
| AGACATTTCCACTTTCTAAT+CGG | - | chr1_1:2339808-2339827 | Msa0000960:CDS | 30.0% | |
| TTCCGTATCCTCAATTATAT+TGG | - | chr1_1:2339839-2339858 | Msa0000960:intron | 30.0% | |
| GTCCAATATAATTGAGGATA+CGG | + | chr1_1:2339844-2339863 | None:intergenic | 30.0% | |
| TATCCTCAATTATATTGGAC+AGG | - | chr1_1:2339844-2339863 | Msa0000960:intron | 30.0% | |
| ! | GAAAAAGCATACACGTATAA+AGG | + | chr1_1:2340034-2340053 | None:intergenic | 30.0% |
| ! | TGAATGAAATCTCACTGTTT+TGG | + | chr1_1:2340062-2340081 | None:intergenic | 30.0% |
| CAAATGAAGGTGACAAAATA+TGG | + | chr1_1:2340336-2340355 | None:intergenic | 30.0% | |
| !! | CTTTTAAGGACTATTGATGA+TGG | - | chr1_1:2340414-2340433 | Msa0000960:intron | 30.0% |
| TCCAAATTAAGCAATGCAAT+TGG | - | chr1_1:2340756-2340775 | Msa0000960:CDS | 30.0% | |
| !! | CTTTTTGATTCGATAGATCT+TGG | - | chr1_1:2340788-2340807 | Msa0000960:intron | 30.0% |
| ! | CTATATATGTTTTCAGTCCA+TGG | + | chr1_1:2340823-2340842 | None:intergenic | 30.0% |
| ! | ATGAATGCTTCATGACTTTT+AGG | + | chr1_1:2340863-2340882 | None:intergenic | 30.0% |
| ! | TAAAAGTCATGAAGCATTCA+TGG | - | chr1_1:2340862-2340881 | Msa0000960:intron | 30.0% |
| ! | AAAGTCTATCAATTAGTCTC+GGG | + | chr1_1:2340920-2340939 | None:intergenic | 30.0% |
| ! | GAAAGTCTATCAATTAGTCT+CGG | + | chr1_1:2340921-2340940 | None:intergenic | 30.0% |
| ! | GCAATGTTGTACTATTTCTT+TGG | + | chr1_1:2341044-2341063 | None:intergenic | 30.0% |
| TTGATCTCATATTGGACTTT+GGG | + | chr1_1:2341212-2341231 | None:intergenic | 30.0% | |
| TTTGATCTCATATTGGACTT+TGG | + | chr1_1:2341213-2341232 | None:intergenic | 30.0% | |
| TAATCCACATCTTTAGATGA+GGG | + | chr1_1:2341331-2341350 | None:intergenic | 30.0% | |
| TTAATCCACATCTTTAGATG+AGG | + | chr1_1:2341332-2341351 | None:intergenic | 30.0% | |
| ! | ACAGTTTTTACCGTATATGT+TGG | - | chr1_1:2341372-2341391 | Msa0000960:intron | 30.0% |
| GTGAGAAAATTATTCCTAAG+AGG | - | chr1_1:2341605-2341624 | Msa0000960:intron | 30.0% | |
| TGAAATCTTAGCAAGATTGA+AGG | - | chr1_1:2341676-2341695 | Msa0000960:intron | 30.0% | |
| GAAATCTTAGCAAGATTGAA+GGG | - | chr1_1:2341677-2341696 | Msa0000960:intron | 30.0% | |
| GACCTTTAATGTATTTGAAC+CGG | - | chr1_1:2342094-2342113 | Msa0000960:intron | 30.0% | |
| ! | ACCGATATATGTCTTATTGA+AGG | - | chr1_1:2342490-2342509 | Msa0000960:intron | 30.0% |
| GCCTTCAATAAGACATATAT+CGG | + | chr1_1:2342494-2342513 | None:intergenic | 30.0% | |
| AAAGCATGACATTAAATGAG+TGG | - | chr1_1:2342699-2342718 | Msa0000960:intron | 30.0% | |
| !! | AAGTTTGTAAATGTTTTGGG+GGG | + | chr1_1:2342739-2342758 | None:intergenic | 30.0% |
| !! | GAAGTTTGTAAATGTTTTGG+GGG | + | chr1_1:2342740-2342759 | None:intergenic | 30.0% |
| AATAAAGATGATCTTGACTC+TGG | - | chr1_1:2342789-2342808 | Msa0000960:intron | 30.0% | |
| ! | GTTTTCAAAGTGTAATTGGT+TGG | - | chr1_1:2343130-2343149 | Msa0000960:intron | 30.0% |
| !! | GTATTTTAAGCCCCATAAAA+TGG | + | chr1_1:2343353-2343372 | None:intergenic | 30.0% |
| GAATTCCTCAATTGTTATAC+AGG | - | chr1_1:2343591-2343610 | Msa0000960:intron | 30.0% | |
| TATGACCTGTATAACAATTG+AGG | + | chr1_1:2343599-2343618 | None:intergenic | 30.0% | |
| AATTGTTATACAGGTCATAG+AGG | - | chr1_1:2343600-2343619 | Msa0000960:intron | 30.0% | |
| ACAAAGCTTGGTTTATTTGT+AGG | - | chr1_1:2344309-2344328 | Msa0000960:intron | 30.0% | |
| AGCATTGTTTGAACTGATAA+AGG | - | chr1_1:2344336-2344355 | Msa0000960:intron | 30.0% | |
| GCATTGTTTGAACTGATAAA+GGG | - | chr1_1:2344337-2344356 | Msa0000960:intron | 30.0% | |
| CATTGTTTGAACTGATAAAG+GGG | - | chr1_1:2344338-2344357 | Msa0000960:intron | 30.0% | |
| GCATTGTAAAAAAATAGCTG+TGG | + | chr1_1:2344412-2344431 | None:intergenic | 30.0% | |
| ! | TATTTAAGGTGCCATGTAAT+GGG | + | chr1_1:2344452-2344471 | None:intergenic | 30.0% |
| ! | TTATTTAAGGTGCCATGTAA+TGG | + | chr1_1:2344453-2344472 | None:intergenic | 30.0% |
| TAAAAGGGACAGGAAAAAAT+GGG | + | chr1_1:2344547-2344566 | None:intergenic | 30.0% | |
| TCATCTTCATCCAACTAAAA+GGG | + | chr1_1:2344562-2344581 | None:intergenic | 30.0% | |
| ATCATCTTCATCCAACTAAA+AGG | + | chr1_1:2344563-2344582 | None:intergenic | 30.0% | |
| AAAGAAGAAAACATAAGAGG+TGG | + | chr1_1:2344878-2344897 | None:intergenic | 30.0% | |
| ! | ACAGTGTAAAATAGAAGCAT+CGG | + | chr1_1:2344929-2344948 | None:intergenic | 30.0% |
| !! | TAATGGTGAATTGATAATGC+TGG | - | chr1_1:2344967-2344986 | Msa0000960:intron | 30.0% |
| !!! | ACGATACTAGTTTTGCATTT+TGG | - | chr1_1:2345011-2345030 | Msa0000960:intron | 30.0% |
| !! | TTGGCTTAGTTTTTATCTTG+CGG | - | chr1_1:2345030-2345049 | Msa0000960:intron | 30.0% |
| !!! | GGGATTATAGTTTTAGTAAC+AGG | - | chr1_1:2345096-2345115 | Msa0000960:intron | 30.0% |
| AAGTTCATCTGAATGAGAAA+TGG | + | chr1_1:2345286-2345305 | None:intergenic | 30.0% | |
| TGAGTCATATGATTGATGTT+AGG | - | chr1_1:2345312-2345331 | Msa0000960:intron | 30.0% | |
| CAAAAAAAATCATAGACACG+GGG | + | chr1_1:2345368-2345387 | None:intergenic | 30.0% | |
| ! | AGTCAAGAAGAAAATCCTTT+TGG | - | chr1_1:2345524-2345543 | Msa0000960:intron | 30.0% |
| ! | AATCTTTCAGCTTTTGAATC+AGG | - | chr1_1:2345574-2345593 | Msa0000960:intron | 30.0% |
| !! | AGATTTGTTGGTACAATAAC+TGG | - | chr1_1:2345709-2345728 | Msa0000960:intron | 30.0% |
| GTTCTTTGTTAGTGATCAAT+CGG | - | chr1_1:2345771-2345790 | Msa0000960:intron | 30.0% | |
| ! | ACAGCTATCCATTTGATAAT+AGG | - | chr1_1:2346236-2346255 | Msa0000960:CDS | 30.0% |
| GAAGAGTTCCTATTATCAAA+TGG | + | chr1_1:2346247-2346266 | None:intergenic | 30.0% | |
| TGATAATAGGAACTCTTCAA+AGG | - | chr1_1:2346249-2346268 | Msa0000960:CDS | 30.0% | |
| GATCATGATAACATGAAAGA+TGG | - | chr1_1:2346495-2346514 | Msa0000960:intron | 30.0% | |
| TTTCTATTGATATAGCGTCT+AGG | - | chr1_1:2346537-2346556 | Msa0000960:intron | 30.0% | |
| TGTTCAACTAAAGAGAATCT+AGG | + | chr1_1:2346632-2346651 | None:intergenic | 30.0% | |
| AATCCTATAGTTGTAGATAG+AGG | - | chr1_1:2346694-2346713 | Msa0000960:intron | 30.0% | |
| AAACCTCTATCTACAACTAT+AGG | + | chr1_1:2346700-2346719 | None:intergenic | 30.0% | |
| TTTCTATTGATATAGCGTCT+AGG | - | chr1_1:2346537-2346556 | Msa0000960:intron | 30.0% | |
| TGTTCAACTAAAGAGAATCT+AGG | + | chr1_1:2346632-2346651 | None:intergenic | 30.0% | |
| TAGACAACAATAGGATCATT+TGG | + | chr1_1:2346886-2346905 | None:intergenic | 30.0% | |
| AGTATTTCCAACTTATGATC+AGG | + | chr1_1:2347030-2347049 | None:intergenic | 30.0% | |
| ! | TGATCATAAGTTGGAAATAC+TGG | - | chr1_1:2347029-2347048 | Msa0000960:intron | 30.0% |
| ! | GATCATAAGTTGGAAATACT+GGG | - | chr1_1:2347030-2347049 | Msa0000960:intron | 30.0% |
| ATCTGTCTCAAAGTTTGAAA+AGG | - | chr1_1:2347080-2347099 | Msa0000960:intron | 30.0% | |
| AACATCTATAATCCTAAGCT+AGG | - | chr1_1:2347309-2347328 | Msa0000960:intron | 30.0% | |
| ACATCTATAATCCTAAGCTA+GGG | - | chr1_1:2347310-2347329 | Msa0000960:intron | 30.0% | |
| TTTGCTTCTCAACAGTAAAT+TGG | - | chr1_1:2347342-2347361 | Msa0000960:intron | 30.0% | |
| TCAACAGTAAATTGGAATGA+TGG | - | chr1_1:2347350-2347369 | Msa0000960:intron | 30.0% | |
| ! | GTATCTTTACTTCTTTGAGA+AGG | - | chr1_1:2347387-2347406 | Msa0000960:intron | 30.0% |
| TGAGAAATATGAACCAATCA+AGG | - | chr1_1:2347570-2347589 | Msa0000960:intron | 30.0% | |
| !! | GTGTTTGTTATGTTACACTT+TGG | - | chr1_1:2347620-2347639 | Msa0000960:intron | 30.0% |
| ATATCATGAACACAAACTTG+TGG | + | chr1_1:2347713-2347732 | None:intergenic | 30.0% | |
| ! | ATTATTCTAGTTGTGCACAA+AGG | - | chr1_1:2347885-2347904 | Msa0000960:five_prime_UTR | 30.0% |
| ! | CAAAGGTATACACAGATTTA+TGG | - | chr1_1:2347902-2347921 | Msa0000960:five_prime_UTR | 30.0% |
| GAATGAATTCTGTTGAAGTC+CGG | + | chr1_1:2336703-2336722 | None:intergenic | 35.0% | |
| GAAGAAGAGAGAATAAGGTT+AGG | + | chr1_1:2336762-2336781 | None:intergenic | 35.0% | |
| CAAAGTTCGTAGTATTTGTG+AGG | + | chr1_1:2336954-2336973 | None:intergenic | 35.0% | |
| ATTTGATCAATTGAGGAAGC+TGG | - | chr1_1:2337096-2337115 | Msa0000960:CDS | 35.0% | |
| ! | ATGCTATAGTAGCACTTTTG+CGG | - | chr1_1:2337561-2337580 | Msa0000960:intron | 35.0% |
| ATGACGGCGTTGTTAAATAA+CGG | - | chr1_1:2337684-2337703 | Msa0000960:intron | 35.0% | |
| ! | GTGTTATCGAATATCGATTG+TGG | + | chr1_1:2337863-2337882 | None:intergenic | 35.0% |
| CAATCGATATTCGATAACAC+TGG | - | chr1_1:2337863-2337882 | Msa0000960:intron | 35.0% | |
| AGGACATATAACATATGCCA+AGG | + | chr1_1:2337952-2337971 | None:intergenic | 35.0% | |
| CTTCTCCTCAAAAAATAGCA+TGG | + | chr1_1:2337991-2338010 | None:intergenic | 35.0% | |
| !!! | CATGCTATTTTTTGAGGAGA+AGG | - | chr1_1:2337989-2338008 | Msa0000960:intron | 35.0% |
| AGTTAGCAAGGATAAATTGC+CGG | - | chr1_1:2338252-2338271 | Msa0000960:intron | 35.0% | |
| AAGGATAAATTGCCGGATAT+TGG | - | chr1_1:2338259-2338278 | Msa0000960:intron | 35.0% | |
| AAAGAAGAGATGGTCTGAAA+GGG | + | chr1_1:2338397-2338416 | None:intergenic | 35.0% | |
| AAAAGAAGAGATGGTCTGAA+AGG | + | chr1_1:2338398-2338417 | None:intergenic | 35.0% | |
| AAATGAACAAACTTTGGGTG+CGG | - | chr1_1:2338774-2338793 | Msa0000960:intron | 35.0% | |
| ATTGTTGATGCTCTCATGTT+TGG | - | chr1_1:2338829-2338848 | Msa0000960:CDS | 35.0% | |
| AGTAACTTCTGTTAATGGCT+TGG | + | chr1_1:2338934-2338953 | None:intergenic | 35.0% | |
| !! | ACTGTCATTTGGTAATGGTT+TGG | - | chr1_1:2338961-2338980 | Msa0000960:intron | 35.0% |
| !! | CTGTCATTTGGTAATGGTTT+GGG | - | chr1_1:2338962-2338981 | Msa0000960:intron | 35.0% |
| ! | AAATACAACAAGCTGGTTCA+GGG | + | chr1_1:2339021-2339040 | None:intergenic | 35.0% |
| ! | AAAATACAACAAGCTGGTTC+AGG | + | chr1_1:2339022-2339041 | None:intergenic | 35.0% |
| !! | ACTAAATCAGTTTGCTAGTG+TGG | - | chr1_1:2339073-2339092 | Msa0000960:intron | 35.0% |
| !! | GCTTCACTTTAAGATCAGTT+TGG | - | chr1_1:2339251-2339270 | Msa0000960:intron | 35.0% |
| CTATTATGACGACATGCATA+AGG | + | chr1_1:2339374-2339393 | None:intergenic | 35.0% | |
| CCCAACCTAATAATGTATCA+AGG | + | chr1_1:2339662-2339681 | None:intergenic | 35.0% | |
| CAACATCTTTGTACATCTCA+AGG | + | chr1_1:2339723-2339742 | None:intergenic | 35.0% | |
| CCATTTATCCGATTAGAAAG+TGG | + | chr1_1:2339819-2339838 | None:intergenic | 35.0% | |
| CCACTTTCTAATCGGATAAA+TGG | - | chr1_1:2339816-2339835 | Msa0000960:intron | 35.0% | |
| GCAATCCATCAAGTAGAATT+GGG | + | chr1_1:2339894-2339913 | None:intergenic | 35.0% | |
| TGCAATCCATCAAGTAGAAT+TGG | + | chr1_1:2339895-2339914 | None:intergenic | 35.0% | |
| TTTGCAAATGGTACTCATCA+GGG | + | chr1_1:2339931-2339950 | None:intergenic | 35.0% | |
| TGAGATTTCATTCATCCAAG+AGG | - | chr1_1:2340068-2340087 | Msa0000960:intron | 35.0% | |
| GAGATTTCATTCATCCAAGA+GGG | - | chr1_1:2340069-2340088 | Msa0000960:intron | 35.0% | |
| ! | TCTTCAAGTTCTAACTGTAC+AGG | + | chr1_1:2340213-2340232 | None:intergenic | 35.0% |
| GTGACAAAATATGGTTATGC+TGG | + | chr1_1:2340327-2340346 | None:intergenic | 35.0% | |
| TACTATCCCAGTTAATGGAA+AGG | - | chr1_1:2340670-2340689 | Msa0000960:CDS | 35.0% | |
| TGAAAGCCTTTCCATTAACT+GGG | + | chr1_1:2340679-2340698 | None:intergenic | 35.0% | |
| TTGAAAGCCTTTCCATTAAC+TGG | + | chr1_1:2340680-2340699 | None:intergenic | 35.0% | |
| GCCAATTGCATTGCTTAATT+TGG | + | chr1_1:2340760-2340779 | None:intergenic | 35.0% | |
| ATTAAGCAATGCAATTGGCA+AGG | - | chr1_1:2340761-2340780 | Msa0000960:CDS | 35.0% | |
| GACTAATTGATAGACTTTCC+AGG | - | chr1_1:2340922-2340941 | Msa0000960:intron | 35.0% | |
| CTATATTGAAGCCATACGTT+GGG | + | chr1_1:2341132-2341151 | None:intergenic | 35.0% | |
| ATCCTTCTAGACGATTATGT+GGG | - | chr1_1:2341175-2341194 | Msa0000960:intron | 35.0% | |
| ! | GATCAGCTTTGATCTCATAT+TGG | + | chr1_1:2341220-2341239 | None:intergenic | 35.0% |
| ! | CTGATCCTTGATTAGTTGTT+GGG | - | chr1_1:2341234-2341253 | Msa0000960:intron | 35.0% |
| !!! | TACCGTATATGTTGGTTTTG+TGG | - | chr1_1:2341380-2341399 | Msa0000960:intron | 35.0% |
| CTCCACAAAACCAACATATA+CGG | + | chr1_1:2341385-2341404 | None:intergenic | 35.0% | |
| ! | TTGTCTTTTTCTGTACAGCA+TGG | - | chr1_1:2341822-2341841 | Msa0000960:intron | 35.0% |
| ! | TGTCTTTTTCTGTACAGCAT+GGG | - | chr1_1:2341823-2341842 | Msa0000960:intron | 35.0% |
| !!! | GACCATTTTTTTGCTTTCTC+TGG | - | chr1_1:2341870-2341889 | Msa0000960:intron | 35.0% |
| GACCAGAGAAAGCAAAAAAA+TGG | + | chr1_1:2341875-2341894 | None:intergenic | 35.0% | |
| ! | GAGATGATAATGTCAATTGC+TGG | - | chr1_1:2341916-2341935 | Msa0000960:intron | 35.0% |
| TATTTGAACCGGCCAAAATT+CGG | - | chr1_1:2342105-2342124 | Msa0000960:intron | 35.0% | |
| ! | AAACCCAATTTTCTGTGAAC+CGG | + | chr1_1:2342169-2342188 | None:intergenic | 35.0% |
| ! | TCAGTAATGGAGAGAATGAA+TGG | - | chr1_1:2342758-2342777 | Msa0000960:intron | 35.0% |
| CTAATCAGTGTTTCAAAACC+GGG | + | chr1_1:2342828-2342847 | None:intergenic | 35.0% | |
| CCTAATCAGTGTTTCAAAAC+CGG | + | chr1_1:2342829-2342848 | None:intergenic | 35.0% | |
| !!! | CGGTTTTGAAACACTGATTA+GGG | - | chr1_1:2342827-2342846 | Msa0000960:intron | 35.0% |
| !!! | GGTTTTGAAACACTGATTAG+GGG | - | chr1_1:2342828-2342847 | Msa0000960:intron | 35.0% |
| GCCCAGTATAGATAAAGAAA+AGG | - | chr1_1:2342978-2342997 | Msa0000960:intron | 35.0% | |
| CAAAGTGTAATTGGTTGGAT+AGG | - | chr1_1:2343135-2343154 | Msa0000960:intron | 35.0% | |
| TGATTCTTAAGATCAGGAGA+GGG | + | chr1_1:2343205-2343224 | None:intergenic | 35.0% | |
| ! | TCTATGCATATGTGGATTGT+GGG | - | chr1_1:2343320-2343339 | Msa0000960:intron | 35.0% |
| ! | TGGGTGGTATTCCATTTTAT+GGG | - | chr1_1:2343339-2343358 | Msa0000960:intron | 35.0% |
| AAACAGAGCACAAAAGAAAG+AGG | + | chr1_1:2343396-2343415 | None:intergenic | 35.0% | |
| ATCAGCATAATCTAGTCGAT+CGG | + | chr1_1:2343701-2343720 | None:intergenic | 35.0% | |
| AGATTATGCTGATCAAGTCT+TGG | - | chr1_1:2343708-2343727 | Msa0000960:CDS | 35.0% | |
| ! | CTGACTGTGTATACTTGTTA+GGG | - | chr1_1:2343991-2344010 | Msa0000960:intron | 35.0% |
| AGGTAAAATTGAGGACAAGA+AGG | - | chr1_1:2344041-2344060 | Msa0000960:intron | 35.0% | |
| AATAACACATACCTTGTCAG+AGG | + | chr1_1:2344244-2344263 | None:intergenic | 35.0% | |
| ATGGGAGAAGTCAAAACAAT+AGG | + | chr1_1:2344434-2344453 | None:intergenic | 35.0% | |
| !!! | TTTTGACTTCTCCCATTACA+TGG | - | chr1_1:2344438-2344457 | Msa0000960:CDS | 35.0% |
| CTAAAAGGGACAGGAAAAAA+TGG | + | chr1_1:2344548-2344567 | None:intergenic | 35.0% | |
| ! | TTTTTCCTGTCCCTTTTAGT+TGG | - | chr1_1:2344549-2344568 | Msa0000960:intron | 35.0% |
| GGATGAAGATGATTTCAAAG+AGG | - | chr1_1:2344570-2344589 | Msa0000960:intron | 35.0% | |
| TGATCCAGAAGAGATGTTTA+AGG | - | chr1_1:2344636-2344655 | Msa0000960:CDS | 35.0% | |
| !! | AAGCATCGGACTAATCAAAA+TGG | + | chr1_1:2344915-2344934 | None:intergenic | 35.0% |
| TTTCAAGCTGGAAATTTGTG+TGG | - | chr1_1:2345134-2345153 | Msa0000960:intron | 35.0% | |
| TGTACTTTACTGTCTACAGT+TGG | - | chr1_1:2345475-2345494 | Msa0000960:intron | 35.0% | |
| TATGCTTGTATAAAGAACGC+CGG | - | chr1_1:2345600-2345619 | Msa0000960:CDS | 35.0% | |
| TCGAGGATTTGAAGATTTGT+TGG | - | chr1_1:2345697-2345716 | Msa0000960:intron | 35.0% | |
| TTGTTGGTACAATAACTGGT+AGG | - | chr1_1:2345713-2345732 | Msa0000960:intron | 35.0% | |
| !! | CTGAGGTACTGGAATATATT+TGG | - | chr1_1:2345934-2345953 | Msa0000960:intron | 35.0% |
| TGGAATTTGTAGGGGTTATA+TGG | + | chr1_1:2346114-2346133 | None:intergenic | 35.0% | |
| ! | AAAAGAGGATTTTGTGTGTG+AGG | + | chr1_1:2346137-2346156 | None:intergenic | 35.0% |
| ! | CACATTTGTGTTGTTATACC+AGG | - | chr1_1:2346196-2346215 | Msa0000960:intron | 35.0% |
| ! | ATGCTTGCTCACATTTGTTT+TGG | - | chr1_1:2346466-2346485 | Msa0000960:intron | 35.0% |
| !! | TGCTTGCTCACATTTGTTTT+GGG | - | chr1_1:2346467-2346486 | Msa0000960:intron | 35.0% |
| ATAACATGAAAGATGGAGAG+AGG | - | chr1_1:2346502-2346521 | Msa0000960:intron | 35.0% | |
| CTTACAAACAGAGCAATTCA+AGG | + | chr1_1:2346593-2346612 | None:intergenic | 35.0% | |
| CTTTAGTTGTTGCCGAAAAA+TGG | + | chr1_1:2346911-2346930 | None:intergenic | 35.0% | |
| TTCACTACTTCACTTTCATG+AGG | + | chr1_1:2346983-2347002 | None:intergenic | 35.0% | |
| ! | CAACTTATGATCAGGTTTTG+TGG | + | chr1_1:2347022-2347041 | None:intergenic | 35.0% |
| CACAAAACCTGATCATAAGT+TGG | - | chr1_1:2347020-2347039 | Msa0000960:intron | 35.0% | |
| TGGGCAAGAAAAAAGAAAGA+AGG | - | chr1_1:2347049-2347068 | Msa0000960:intron | 35.0% | |
| GGGCAAGAAAAAAGAAAGAA+GGG | - | chr1_1:2347050-2347069 | Msa0000960:intron | 35.0% | |
| !! | AATGAAGAGCATTACTGATC+CGG | + | chr1_1:2347267-2347286 | None:intergenic | 35.0% |
| AAGAAAAACAACCCTAGCTT+AGG | + | chr1_1:2347324-2347343 | None:intergenic | 35.0% | |
| !! | AATGATGGTGTGTTTTTGCA+AGG | - | chr1_1:2347365-2347384 | Msa0000960:intron | 35.0% |
| TAATTAACTCAATTAGGCCC+TGG | + | chr1_1:2347441-2347460 | None:intergenic | 35.0% | |
| ! | CTGCTTTGAATTGTCTTCTT+TGG | - | chr1_1:2347672-2347691 | Msa0000960:CDS | 35.0% |
| AACACAAACTTGTGGTTTCA+CGG | + | chr1_1:2347705-2347724 | None:intergenic | 35.0% | |
| CAGCAAAAACATGTTCAGTT+TGG | - | chr1_1:2347740-2347759 | Msa0000960:exon | 35.0% | |
| GCAAAACGGGAGAAATTAAG+AGG | - | chr1_1:2336506-2336525 | Msa0000960:three_prime_UTR | 40.0% | |
| GAGGAACTTCTCTTCATCTT+CGG | + | chr1_1:2336667-2336686 | None:intergenic | 40.0% | |
| ATAAGGTTAGGGTTTAACGG+AGG | + | chr1_1:2336750-2336769 | None:intergenic | 40.0% | |
| !! | TTCATTTTCCGATTCGTTGC+AGG | - | chr1_1:2336854-2336873 | Msa0000960:CDS | 40.0% |
| CTCTACAGCATAGCAGAATT+CGG | - | chr1_1:2337490-2337509 | Msa0000960:intron | 40.0% | |
| AGTATATCGCGGAACAATAG+TGG | + | chr1_1:2337521-2337540 | None:intergenic | 40.0% | |
| CAATCCAATGTTGTCAATCG+CGG | + | chr1_1:2337647-2337666 | None:intergenic | 40.0% | |
| TCCATAGTGATGTTGCATAG+CGG | - | chr1_1:2337722-2337741 | Msa0000960:intron | 40.0% | |
| TTGTGGATCACAGGAAATAG+CGG | + | chr1_1:2337846-2337865 | None:intergenic | 40.0% | |
| ! | GAATATCGATTGTGGATCAC+AGG | + | chr1_1:2337855-2337874 | None:intergenic | 40.0% |
| TATTCGATAACACTGGTGCA+TGG | - | chr1_1:2337870-2337889 | Msa0000960:intron | 40.0% | |
| ATGGGAGCTTCATAACCAAA+AGG | + | chr1_1:2337972-2337991 | None:intergenic | 40.0% | |
| !!! | AGCTCCCATGCTATTTTTTG+AGG | - | chr1_1:2337983-2338002 | Msa0000960:intron | 40.0% |
| ATACAGATCCTACTGTACAG+AGG | + | chr1_1:2338120-2338139 | None:intergenic | 40.0% | |
| TCCTGCTAAGGATGTTCTTA+AGG | - | chr1_1:2338159-2338178 | Msa0000960:CDS | 40.0% | |
| TCCTTAAGAACATCCTTAGC+AGG | + | chr1_1:2338163-2338182 | None:intergenic | 40.0% | |
| TCGTACTCAGAACCAATATC+CGG | + | chr1_1:2338274-2338293 | None:intergenic | 40.0% | |
| !! | GATATTGGTTCTGAGTACGA+GGG | - | chr1_1:2338274-2338293 | Msa0000960:intron | 40.0% |
| !! | ATATTGGTTCTGAGTACGAG+GGG | - | chr1_1:2338275-2338294 | Msa0000960:intron | 40.0% |
| TTATCCTCCACTTCTGTTTG+TGG | - | chr1_1:2338322-2338341 | Msa0000960:CDS | 40.0% | |
| CAAGAAACCACAAACAGAAG+TGG | + | chr1_1:2338332-2338351 | None:intergenic | 40.0% | |
| AGTTTGGATGTCTTCAGATC+CGG | + | chr1_1:2338441-2338460 | None:intergenic | 40.0% | |
| CAGTGTTTGAATTGCAGAGA+CGG | + | chr1_1:2338598-2338617 | None:intergenic | 40.0% | |
| AGAGTAGACATCCACATATC+AGG | + | chr1_1:2338690-2338709 | None:intergenic | 40.0% | |
| ATGTCTACTCTGACAACTGT+AGG | - | chr1_1:2338699-2338718 | Msa0000960:intron | 40.0% | |
| TGTCTACTCTGACAACTGTA+GGG | - | chr1_1:2338700-2338719 | Msa0000960:intron | 40.0% | |
| GTGCAGTTTACAGTTCAGTT+TGG | + | chr1_1:2338893-2338912 | None:intergenic | 40.0% | |
| ACACTCTTAGGAATCCAGTT+TGG | - | chr1_1:2338991-2339010 | Msa0000960:intron | 40.0% | |
| ATCTACCTTGTCTTTGCTGA+AGG | - | chr1_1:2339128-2339147 | Msa0000960:intron | 40.0% | |
| CATCACTTTATGGTTGGGTT+TGG | - | chr1_1:2339206-2339225 | Msa0000960:intron | 40.0% | |
| GAGTTCAGCTTAGTTCAGTT+TGG | - | chr1_1:2339320-2339339 | Msa0000960:intron | 40.0% | |
| TATGACGACATGCATAAGGT+TGG | + | chr1_1:2339370-2339389 | None:intergenic | 40.0% | |
| TAGTGAAGCAAACCAGTTAC+AGG | + | chr1_1:2339583-2339602 | None:intergenic | 40.0% | |
| !! | ACTGGTTTGCTTCACTATGA+TGG | - | chr1_1:2339586-2339605 | Msa0000960:intron | 40.0% |
| TCATGTTCTCAGTCAGATAG+AGG | - | chr1_1:2339690-2339709 | Msa0000960:intron | 40.0% | |
| CATGTTCTCAGTCAGATAGA+GGG | - | chr1_1:2339691-2339710 | Msa0000960:intron | 40.0% | |
| TTTACCTGCTCAAGTACTCT+AGG | + | chr1_1:2339751-2339770 | None:intergenic | 40.0% | |
| CGACCTGTCCAATATAATTG+AGG | + | chr1_1:2339850-2339869 | None:intergenic | 40.0% | |
| CGTGAATTGCAAAGATGAGT+TGG | - | chr1_1:2339868-2339887 | Msa0000960:intron | 40.0% | |
| GTTTGCAAATGGTACTCATC+AGG | + | chr1_1:2339932-2339951 | None:intergenic | 40.0% | |
| GCACATCAAGAGTTTGCAAA+TGG | + | chr1_1:2339943-2339962 | None:intergenic | 40.0% | |
| ! | CAAACTCTTGATGTGCTGTT+GGG | - | chr1_1:2339947-2339966 | Msa0000960:intron | 40.0% |
| ! | TTACCCTCAACTTCAGGTTA+GGG | - | chr1_1:2339973-2339992 | Msa0000960:intron | 40.0% |
| TTTGTTCTTCAGAACCCTCT+TGG | + | chr1_1:2340086-2340105 | None:intergenic | 40.0% | |
| TGCATTCTTTGACTGCTAGT+TGG | - | chr1_1:2340469-2340488 | Msa0000960:intron | 40.0% | |
| TTTACTAGCAGTCAACTAGC+AGG | + | chr1_1:2340522-2340541 | None:intergenic | 40.0% | |
| TGCTAGTTGACTGCTAGTAA+AGG | - | chr1_1:2340521-2340540 | Msa0000960:intron | 40.0% | |
| AACTGAGTGACAATACCTAC+TGG | + | chr1_1:2340597-2340616 | None:intergenic | 40.0% | |
| GACAGTACTATCCCAGTTAA+TGG | - | chr1_1:2340665-2340684 | Msa0000960:intron | 40.0% | |
| ! | CAAGTTGACTATGTACTTCC+TGG | + | chr1_1:2340943-2340962 | None:intergenic | 40.0% |
| ! | CAACTTGTTTACTTCCCAAC+AGG | - | chr1_1:2340956-2340975 | Msa0000960:intron | 40.0% |
| GCTATATTGAAGCCATACGT+TGG | + | chr1_1:2341133-2341152 | None:intergenic | 40.0% | |
| CATAATCGTCTAGAAGGATG+AGG | + | chr1_1:2341174-2341193 | None:intergenic | 40.0% | |
| CATCCTTCTAGACGATTATG+TGG | - | chr1_1:2341174-2341193 | Msa0000960:intron | 40.0% | |
| TCCTTCTAGACGATTATGTG+GGG | - | chr1_1:2341176-2341195 | Msa0000960:intron | 40.0% | |
| ! | GCTGATCCTTGATTAGTTGT+TGG | - | chr1_1:2341233-2341252 | Msa0000960:intron | 40.0% |
| ATCTTTAGATGAGGGACTTG+AGG | + | chr1_1:2341323-2341342 | None:intergenic | 40.0% | |
| AAGTCCCTCATCTAAAGATG+TGG | - | chr1_1:2341324-2341343 | Msa0000960:intron | 40.0% | |
| TCCTAAGAGGTCATGTATCA+AGG | - | chr1_1:2341618-2341637 | Msa0000960:intron | 40.0% | |
| ACCTTGATACATGACCTCTT+AGG | + | chr1_1:2341622-2341641 | None:intergenic | 40.0% | |
| ! | AGCACGATTTTGTGTGATCT+TGG | - | chr1_1:2341723-2341742 | Msa0000960:intron | 40.0% |
| AAAAGACAACCGCACAAAGA+TGG | + | chr1_1:2341811-2341830 | None:intergenic | 40.0% | |
| ! | GGCCGGTTCAAATACATTAA+AGG | + | chr1_1:2342099-2342118 | None:intergenic | 40.0% |
| TTGTCCGGTTCACAGAAAAT+TGG | - | chr1_1:2342162-2342181 | Msa0000960:intron | 40.0% | |
| TGTCCGGTTCACAGAAAATT+GGG | - | chr1_1:2342163-2342182 | Msa0000960:intron | 40.0% | |
| GTGTCACAAATTGACGCATT+TGG | + | chr1_1:2342528-2342547 | None:intergenic | 40.0% | |
| ! | GGAGAGCATAGAAAATAGAG+AGG | + | chr1_1:2342642-2342661 | None:intergenic | 40.0% |
| !!! | CCGGTTTTGAAACACTGATT+AGG | - | chr1_1:2342826-2342845 | Msa0000960:intron | 40.0% |
| ! | GAAACACTGATTAGGGGTAT+TGG | - | chr1_1:2342834-2342853 | Msa0000960:intron | 40.0% |
| !! | ACTGATTAGGGGTATTGGTT+TGG | - | chr1_1:2342839-2342858 | Msa0000960:intron | 40.0% |
| !! | CTGATTAGGGGTATTGGTTT+GGG | - | chr1_1:2342840-2342859 | Msa0000960:intron | 40.0% |
| TTATCTATACTGGGCCTTCA+TGG | + | chr1_1:2342973-2342992 | None:intergenic | 40.0% | |
| GTGATTCTTAAGATCAGGAG+AGG | + | chr1_1:2343206-2343225 | None:intergenic | 40.0% | |
| ! | GTCTATGCATATGTGGATTG+TGG | - | chr1_1:2343319-2343338 | Msa0000960:intron | 40.0% |
| ! | GTGGGTGGTATTCCATTTTA+TGG | - | chr1_1:2343338-2343357 | Msa0000960:intron | 40.0% |
| ! | GGGTGGTATTCCATTTTATG+GGG | - | chr1_1:2343340-2343359 | Msa0000960:intron | 40.0% |
| AAAGTTACAACTCCAGCAGT+GGG | + | chr1_1:2343640-2343659 | None:intergenic | 40.0% | |
| TAAAGTTACAACTCCAGCAG+TGG | + | chr1_1:2343641-2343660 | None:intergenic | 40.0% | |
| TCAGCATAATCTAGTCGATC+GGG | + | chr1_1:2343700-2343719 | None:intergenic | 40.0% | |
| TAAGGAAGCAGACTTACTCT+TGG | - | chr1_1:2343950-2343969 | Msa0000960:intron | 40.0% | |
| !! | ACACAGTCAGGCATTGTTTT+TGG | + | chr1_1:2343981-2344000 | None:intergenic | 40.0% |
| CCTAACAAGTATACACAGTC+AGG | + | chr1_1:2343993-2344012 | None:intergenic | 40.0% | |
| CCTGACTGTGTATACTTGTT+AGG | - | chr1_1:2343990-2344009 | Msa0000960:intron | 40.0% | |
| GCATGTGTGAAAAATCTCTC+TGG | - | chr1_1:2344015-2344034 | Msa0000960:intron | 40.0% | |
| GTGAAAAATCTCTCTGGCAA+AGG | - | chr1_1:2344021-2344040 | Msa0000960:intron | 40.0% | |
| CTCTGGCAAAGGTAAAATTG+AGG | - | chr1_1:2344032-2344051 | Msa0000960:intron | 40.0% | |
| AGGGTAGTTTGAAAGCTTCA+AGG | + | chr1_1:2344130-2344149 | None:intergenic | 40.0% | |
| TTCAAACTACCCTCGTGTAA+TGG | - | chr1_1:2344137-2344156 | Msa0000960:intron | 40.0% | |
| CAAGGAATTCCATTACACGA+GGG | + | chr1_1:2344149-2344168 | None:intergenic | 40.0% | |
| TCAAGGAATTCCATTACACG+AGG | + | chr1_1:2344150-2344169 | None:intergenic | 40.0% | |
| CCTTATTAGTTGGAACGTCA+AGG | + | chr1_1:2344167-2344186 | None:intergenic | 40.0% | |
| CCTTGACGTTCCAACTAATA+AGG | - | chr1_1:2344164-2344183 | Msa0000960:intron | 40.0% | |
| CGTTCCAACTAATAAGGTCA+TGG | - | chr1_1:2344170-2344189 | Msa0000960:intron | 40.0% | |
| GTTGCCATGACCTTATTAGT+TGG | + | chr1_1:2344177-2344196 | None:intergenic | 40.0% | |
| ACTGATAAAGGGGCTTATCA+AGG | - | chr1_1:2344348-2344367 | Msa0000960:intron | 40.0% | |
| ACTGAAATGACCTCTTCATC+AGG | + | chr1_1:2344388-2344407 | None:intergenic | 40.0% | |
| TTCATCCAACTAAAAGGGAC+AGG | + | chr1_1:2344557-2344576 | None:intergenic | 40.0% | |
| CTCACCTTAAACATCTCTTC+TGG | + | chr1_1:2344643-2344662 | None:intergenic | 40.0% | |
| ! | GAGATGTTTAAGGTGAGTTG+TGG | - | chr1_1:2344646-2344665 | Msa0000960:CDS | 40.0% |
| TCATAGTTTACGCCCTATTC+AGG | - | chr1_1:2344730-2344749 | Msa0000960:intron | 40.0% | |
| CATAGTTTACGCCCTATTCA+GGG | - | chr1_1:2344731-2344750 | Msa0000960:intron | 40.0% | |
| CACTAATTGCACATGATGAC+TGG | - | chr1_1:2344824-2344843 | Msa0000960:intron | 40.0% | |
| TAATTGCACATGATGACTGG+AGG | - | chr1_1:2344827-2344846 | Msa0000960:intron | 40.0% | |
| ATAAGAGGTGGAACAGTGAA+AGG | + | chr1_1:2344866-2344885 | None:intergenic | 40.0% | |
| !! | TGGTGAATTGATAATGCTGG+CGG | - | chr1_1:2344970-2344989 | Msa0000960:intron | 40.0% |
| !! | GTTTTAGTAACAGGCTGCTA+AGG | - | chr1_1:2345105-2345124 | Msa0000960:intron | 40.0% |
| ! | CTAAGGCTTTGATTTCAAGC+TGG | - | chr1_1:2345122-2345141 | Msa0000960:intron | 40.0% |
| ACTTCAATGAATGAGGCAAC+TGG | - | chr1_1:2345182-2345201 | Msa0000960:intron | 40.0% | |
| CTTCAATGAATGAGGCAACT+GGG | - | chr1_1:2345183-2345202 | Msa0000960:intron | 40.0% | |
| ! | TGTTTCTATTTCCAGCTGAC+AGG | - | chr1_1:2345244-2345263 | Msa0000960:intron | 40.0% |
| CTGTAGAAAAAGACAAGCAG+CGG | + | chr1_1:2345420-2345439 | None:intergenic | 40.0% | |
| TTTACTGTCTACAGTTGGTC+AGG | - | chr1_1:2345480-2345499 | Msa0000960:intron | 40.0% | |
| GTTGATGCATCATCTCCAAA+AGG | + | chr1_1:2345542-2345561 | None:intergenic | 40.0% | |
| ACAGTCATTTGCAGCCTTAA+CGG | + | chr1_1:2346015-2346034 | None:intergenic | 40.0% | |
| TGTGTGAGGTGGAATTTGTA+GGG | + | chr1_1:2346123-2346142 | None:intergenic | 40.0% | |
| CTTCAAAGGATGCATGTCTT+CGG | - | chr1_1:2346263-2346282 | Msa0000960:CDS | 40.0% | |
| CAGGGATACTTTAACTCACA+AGG | - | chr1_1:2346295-2346314 | Msa0000960:intron | 40.0% | |
| GAATTCAATAATCACCCCTG+TGG | + | chr1_1:2346321-2346340 | None:intergenic | 40.0% | |
| CTCACAAACAGAGCAATTCA+AGG | + | chr1_1:2346785-2346804 | None:intergenic | 40.0% | |
| CTTGAATTGCTCTGTTTGTG+AGG | - | chr1_1:2346783-2346802 | Msa0000960:intron | 40.0% | |
| CTTAAGGCATAATAGGACTC+TGG | + | chr1_1:2347186-2347205 | None:intergenic | 40.0% | |
| GAGTCCTATTATGCCTTAAG+CGG | - | chr1_1:2347186-2347205 | Msa0000960:intron | 40.0% | |
| AGTCCTATTATGCCTTAAGC+GGG | - | chr1_1:2347187-2347206 | Msa0000960:CDS | 40.0% | |
| TGCAAATGCTGCACAACAAA+TGG | - | chr1_1:2347220-2347239 | Msa0000960:CDS | 40.0% | |
| ! | TAGCAGCAACTGTAACTTGT+GGG | + | chr1_1:2347417-2347436 | None:intergenic | 40.0% |
| ATAGCAGCAACTGTAACTTG+TGG | + | chr1_1:2347418-2347437 | None:intergenic | 40.0% | |
| CTGTATATAGCGCATAGTAG+TGG | + | chr1_1:2347521-2347540 | None:intergenic | 40.0% | |
| CAGTTCCAAAAACAAAAGGG+TGG | - | chr1_1:2347538-2347557 | Msa0000960:intron | 40.0% | |
| !!! | CTGTACCACCCTTTTGTTTT+TGG | + | chr1_1:2347546-2347565 | None:intergenic | 40.0% |
| AAACAAAAGGGTGGTACAGT+TGG | - | chr1_1:2347547-2347566 | Msa0000960:intron | 40.0% | |
| ACCAATCAAGGTTTGACATG+TGG | - | chr1_1:2347582-2347601 | Msa0000960:intron | 40.0% | |
| TCCACATGTCAAACCTTGAT+TGG | + | chr1_1:2347586-2347605 | None:intergenic | 40.0% | |
| GGATCATCACATGAGCAAAT+TGG | + | chr1_1:2347647-2347666 | None:intergenic | 40.0% | |
| AGACAATTCAAAGCAGTTGC+TGG | + | chr1_1:2347668-2347687 | None:intergenic | 40.0% | |
| !!! | GCTGTTTTTGACCCCCAAAT+TGG | + | chr1_1:2336488-2336507 | None:intergenic | 45.0% |
| GGGGGTCAAAAACAGCAAAA+CGG | - | chr1_1:2336492-2336511 | Msa0000960:three_prime_UTR | 45.0% | |
| GGGGTCAAAAACAGCAAAAC+GGG | - | chr1_1:2336493-2336512 | Msa0000960:three_prime_UTR | 45.0% | |
| ATCGAAGTTGAGAACTTCGC+CGG | - | chr1_1:2336620-2336639 | Msa0000960:three_prime_UTR | 45.0% | |
| ATTCTACATGCACCGTGCAT+TGG | - | chr1_1:2336719-2336738 | Msa0000960:three_prime_UTR | 45.0% | |
| GTTCGAATCCTGCAACGAAT+CGG | + | chr1_1:2336865-2336884 | None:intergenic | 45.0% | |
| TGCGCGCATTTGATCAATTG+AGG | - | chr1_1:2337089-2337108 | Msa0000960:intron | 45.0% | |
| ! | CATTTTGCCGCGATTGTAAG+TGG | - | chr1_1:2337195-2337214 | Msa0000960:intron | 45.0% |
| CGAATTCTGCTATGCTGTAG+AGG | + | chr1_1:2337492-2337511 | None:intergenic | 45.0% | |
| ! | ATAGTAGCACTTTTGCGGAG+CGG | - | chr1_1:2337566-2337585 | Msa0000960:intron | 45.0% |
| ATGTTGTCAATCGCCGATAG+TGG | + | chr1_1:2337604-2337623 | None:intergenic | 45.0% | |
| CTATCGGCGATTGACAACAT+TGG | - | chr1_1:2337604-2337623 | Msa0000960:intron | 45.0% | |
| CCATAGTGATGTTGCATAGC+GGG | - | chr1_1:2337723-2337742 | Msa0000960:intron | 45.0% | |
| ACTTGCTCAGAAACTGATCC+CGG | - | chr1_1:2337906-2337925 | Msa0000960:CDS | 45.0% | |
| AGGTATCTCCTCTGTACAGT+AGG | - | chr1_1:2338109-2338128 | Msa0000960:CDS | 45.0% | |
| GATCTTGTAGAGATGTGTCG+TGG | - | chr1_1:2338181-2338200 | Msa0000960:intron | 45.0% | |
| !! | GGATATTGGTTCTGAGTACG+AGG | - | chr1_1:2338273-2338292 | Msa0000960:intron | 45.0% |
| GAAACCACAAACAGAAGTGG+AGG | + | chr1_1:2338329-2338348 | None:intergenic | 45.0% | |
| TGCATGTCTAGTCCTGTTCA+TGG | - | chr1_1:2338855-2338874 | Msa0000960:CDS | 45.0% | |
| TTTGGGAACTGCACACTCTT+AGG | - | chr1_1:2338979-2338998 | Msa0000960:intron | 45.0% | |
| CAGTTCGCTGCATCACTTTA+TGG | - | chr1_1:2339196-2339215 | Msa0000960:intron | 45.0% | |
| TCGCTGCATCACTTTATGGT+TGG | - | chr1_1:2339200-2339219 | Msa0000960:intron | 45.0% | |
| CGCTGCATCACTTTATGGTT+GGG | - | chr1_1:2339201-2339220 | Msa0000960:intron | 45.0% | |
| ! | GCATAAGGTTGGTCATGGTT+TGG | + | chr1_1:2339359-2339378 | None:intergenic | 45.0% |
| ! | GACATGCATAAGGTTGGTCA+TGG | + | chr1_1:2339364-2339383 | None:intergenic | 45.0% |
| ! | GTCATGAAGGGCATGATTTC+TGG | - | chr1_1:2339400-2339419 | Msa0000960:intron | 45.0% |
| TTTCTCGTTTCTCCTTCTCC+CGG | + | chr1_1:2339521-2339540 | None:intergenic | 45.0% | |
| GGAGAAGGAGAAACGAGAAA+AGG | - | chr1_1:2339521-2339540 | Msa0000960:intron | 45.0% | |
| AGGAGAAACGAGAAAAGGAG+AGG | - | chr1_1:2339526-2339545 | Msa0000960:intron | 45.0% | |
| TAATACCCGAAGCCTGTAAC+TGG | - | chr1_1:2339568-2339587 | Msa0000960:intron | 45.0% | |
| AGCAAACCAGTTACAGGCTT+CGG | + | chr1_1:2339577-2339596 | None:intergenic | 45.0% | |
| GTTGGCCCAATTCTACTTGA+TGG | - | chr1_1:2339886-2339905 | Msa0000960:intron | 45.0% | |
| GCAAACTCTTGATGTGCTGT+TGG | - | chr1_1:2339946-2339965 | Msa0000960:intron | 45.0% | |
| ! | CTTACCCTCAACTTCAGGTT+AGG | - | chr1_1:2339972-2339991 | Msa0000960:intron | 45.0% |
| GTTCCCTAACCTGAAGTTGA+GGG | + | chr1_1:2339979-2339998 | None:intergenic | 45.0% | |
| AGTTCCCTAACCTGAAGTTG+AGG | + | chr1_1:2339980-2339999 | None:intergenic | 45.0% | |
| !! | ATTTTGGGGATGCCAAATGC+AGG | + | chr1_1:2340239-2340258 | None:intergenic | 45.0% |
| GTCTATCCATATCCCACAGA+TGG | - | chr1_1:2340298-2340317 | Msa0000960:CDS | 45.0% | |
| !! | TTATGCTGGCTTCCATCTGT+GGG | + | chr1_1:2340313-2340332 | None:intergenic | 45.0% |
| ! | TTATGCTGCTTCAAGTGCAG+AGG | - | chr1_1:2340701-2340720 | Msa0000960:CDS | 45.0% |
| TGCTTCCACCTGCAAAAACT+CGG | + | chr1_1:2340733-2340752 | None:intergenic | 45.0% | |
| GATCTTGGAAACTACAGCCA+TGG | - | chr1_1:2340803-2340822 | Msa0000960:intron | 45.0% | |
| CTAGAGAAAAGCCCAACGTA+TGG | - | chr1_1:2341118-2341137 | Msa0000960:intron | 45.0% | |
| ACCCCACATAATCGTCTAGA+AGG | + | chr1_1:2341180-2341199 | None:intergenic | 45.0% | |
| !! | ATCGTGCTATTTCACGATCC+AGG | + | chr1_1:2341711-2341730 | None:intergenic | 45.0% |
| TCTATGCAGCCATCTTTGTG+CGG | - | chr1_1:2341799-2341818 | Msa0000960:intron | 45.0% | |
| TCGCAATGCCTTCGAAGAAT+GGG | - | chr1_1:2341893-2341912 | Msa0000960:intron | 45.0% | |
| ATCATCTCCCCATTCTTCGA+AGG | + | chr1_1:2341904-2341923 | None:intergenic | 45.0% | |
| TCAATTGCTGGTGCAGCTAA+TGG | - | chr1_1:2341928-2341947 | Msa0000960:intron | 45.0% | |
| TGCAGCTAATGGAATCTGCT+AGG | - | chr1_1:2341939-2341958 | Msa0000960:intron | 45.0% | |
| !!! | AGGGGCAGTGTTTTAAAACC+CGG | - | chr1_1:2342003-2342022 | Msa0000960:intron | 45.0% |
| TCTAATGCCCTGACCAAATC+GGG | + | chr1_1:2342076-2342095 | None:intergenic | 45.0% | |
| GTCTAATGCCCTGACCAAAT+CGG | + | chr1_1:2342077-2342096 | None:intergenic | 45.0% | |
| GTGAACCGGTAAGAATTGTC+CGG | - | chr1_1:2342147-2342166 | Msa0000960:intron | 45.0% | |
| GTGAACCGGACAATTCTTAC+CGG | + | chr1_1:2342155-2342174 | None:intergenic | 45.0% | |
| TACGTGAAACTCAGTGCATG+CGG | + | chr1_1:2342219-2342238 | None:intergenic | 45.0% | |
| AATTGACGCATTTGGACACC+AGG | + | chr1_1:2342520-2342539 | None:intergenic | 45.0% | |
| CGCTGATATCGGCAGTAATT+TGG | + | chr1_1:2342585-2342604 | None:intergenic | 45.0% | |
| AGTGTTTCAAAACCGGGTCA+AGG | + | chr1_1:2342822-2342841 | None:intergenic | 45.0% | |
| ! | ATGCATATGTGGATTGTGGG+TGG | - | chr1_1:2343323-2343342 | Msa0000960:intron | 45.0% |
| CAGCATAATCTAGTCGATCG+GGG | + | chr1_1:2343699-2343718 | None:intergenic | 45.0% | |
| ACGCATTTCTACCTCTGACA+AGG | - | chr1_1:2344230-2344249 | Msa0000960:intron | 45.0% | |
| TCTGGTCTAACCTCTACGTT+TGG | - | chr1_1:2344270-2344289 | Msa0000960:intron | 45.0% | |
| AAAGCTCACACCAAACGTAG+AGG | + | chr1_1:2344283-2344302 | None:intergenic | 45.0% | |
| GGGCTTATCAAGGATTCTGA+CGG | - | chr1_1:2344358-2344377 | Msa0000960:intron | 45.0% | |
| GGCTTATCAAGGATTCTGAC+GGG | - | chr1_1:2344359-2344378 | Msa0000960:intron | 45.0% | |
| CACAACTGCAATGCTAACTC+TGG | + | chr1_1:2345903-2345922 | None:intergenic | 45.0% | |
| GTGTGAGGTGGAATTTGTAG+GGG | + | chr1_1:2346122-2346141 | None:intergenic | 45.0% | |
| GTGTGTGAGGTGGAATTTGT+AGG | + | chr1_1:2346124-2346143 | None:intergenic | 45.0% | |
| ! | AGAGGATTTTGTGTGTGAGG+TGG | + | chr1_1:2346134-2346153 | None:intergenic | 45.0% |
| !! | ATGTCTTCGGTGTTGAGAAC+AGG | - | chr1_1:2346276-2346295 | Msa0000960:intron | 45.0% |
| !! | TGTCTTCGGTGTTGAGAACA+GGG | - | chr1_1:2346277-2346296 | Msa0000960:intron | 45.0% |
| ACTTTAACTCACAAGGCCAC+AGG | - | chr1_1:2346302-2346321 | Msa0000960:intron | 45.0% | |
| CTTTAACTCACAAGGCCACA+GGG | - | chr1_1:2346303-2346322 | Msa0000960:intron | 45.0% | |
| TTTAACTCACAAGGCCACAG+GGG | - | chr1_1:2346304-2346323 | Msa0000960:intron | 45.0% | |
| ! | TACACAGCTCTGCATTGATC+TGG | + | chr1_1:2346447-2346466 | None:intergenic | 45.0% |
| TTTCATGAGGATAGCAGCGT+TGG | + | chr1_1:2346970-2346989 | None:intergenic | 45.0% | |
| AAGCCCGCTTAAGGCATAAT+AGG | + | chr1_1:2347193-2347212 | None:intergenic | 45.0% | |
| ! | TATGCCTTAAGCGGGCTTTA+AGG | - | chr1_1:2347195-2347214 | Msa0000960:CDS | 45.0% |
| CAATCCTTAAAGCCCGCTTA+AGG | + | chr1_1:2347202-2347221 | None:intergenic | 45.0% | |
| AGTTACAGTTGCTGCTATCC+AGG | - | chr1_1:2347420-2347439 | Msa0000960:intron | 45.0% | |
| GTTACAGTTGCTGCTATCCA+GGG | - | chr1_1:2347421-2347440 | Msa0000960:intron | 45.0% | |
| ! | CCGTCGAGCATCATTTTCTC+CGG | + | chr1_1:2336642-2336661 | None:intergenic | 50.0% |
| CCGGAGAAAATGATGCTCGA+CGG | - | chr1_1:2336639-2336658 | Msa0000960:three_prime_UTR | 50.0% | |
| ACGGAGGAGTTACCAATGCA+CGG | + | chr1_1:2336734-2336753 | None:intergenic | 50.0% | |
| CGATAATCGTGAATCGCGAG+TGG | + | chr1_1:2336789-2336808 | None:intergenic | 50.0% | |
| GAAGCTGGAGATGTTCTTCG+AGG | - | chr1_1:2337111-2337130 | Msa0000960:CDS | 50.0% | |
| CAATCGCGGCAAAATGTTGC+CGG | + | chr1_1:2337191-2337210 | None:intergenic | 50.0% | |
| TCTAGCGCCACTTACAATCG+CGG | + | chr1_1:2337205-2337224 | None:intergenic | 50.0% | |
| TGAGCCGCGATTGACAACAT+TGG | - | chr1_1:2337640-2337659 | Msa0000960:intron | 50.0% | |
| CCCGCTATGCAACATCACTA+TGG | + | chr1_1:2337726-2337745 | None:intergenic | 50.0% | |
| ATCGAAGGAAGCTCCTGCTA+AGG | - | chr1_1:2338147-2338166 | Msa0000960:CDS | 50.0% | |
| GGCATTCAGAATCCTGTTCG+TGG | - | chr1_1:2338202-2338221 | Msa0000960:intron | 50.0% | |
| CTGAGAAAGAGTCCACGAAC+AGG | + | chr1_1:2338217-2338236 | None:intergenic | 50.0% | |
| GTTATATCTGGACTGCCAGC+CGG | - | chr1_1:2338419-2338438 | Msa0000960:intron | 50.0% | |
| CACTGCCTTCAGCAAAGACA+AGG | + | chr1_1:2339136-2339155 | None:intergenic | 50.0% | |
| ATCTGCCAACTATGCAGCAC+TGG | + | chr1_1:2339162-2339181 | None:intergenic | 50.0% | |
| !! | GGCATGATTTCTGGTCATGC+AGG | - | chr1_1:2339409-2339428 | Msa0000960:intron | 50.0% |
| TCTTAGCTGACCCTGAGTTG+AGG | - | chr1_1:2339460-2339479 | Msa0000960:intron | 50.0% | |
| TTCTCGTTTCTCCTTCTCCC+GGG | + | chr1_1:2339520-2339539 | None:intergenic | 50.0% | |
| GCAAACCAGTTACAGGCTTC+GGG | + | chr1_1:2339576-2339595 | None:intergenic | 50.0% | |
| ! | GCTTCCTAGAGTACTTGAGC+AGG | - | chr1_1:2339744-2339763 | Msa0000960:CDS | 50.0% |
| !! | ACTTGAAGAGCGCCTGCATT+TGG | - | chr1_1:2340224-2340243 | Msa0000960:CDS | 50.0% |
| TGGCTTCCATCTGTGGGATA+TGG | + | chr1_1:2340307-2340326 | None:intergenic | 50.0% | |
| !! | GTTATGCTGGCTTCCATCTG+TGG | + | chr1_1:2340314-2340333 | None:intergenic | 50.0% |
| ! | GGTTTTGCCCGAGTTTTTGC+AGG | - | chr1_1:2340722-2340741 | Msa0000960:CDS | 50.0% |
| ! | TTTGCCCGAGTTTTTGCAGG+TGG | - | chr1_1:2340725-2340744 | Msa0000960:CDS | 50.0% |
| GCTTCCACCTGCAAAAACTC+GGG | + | chr1_1:2340732-2340751 | None:intergenic | 50.0% | |
| GTCTCGGGTTATATGTGTGC+TGG | + | chr1_1:2340905-2340924 | None:intergenic | 50.0% | |
| GGTGGCCCAACAACTAATCA+AGG | + | chr1_1:2341242-2341261 | None:intergenic | 50.0% | |
| TTGGGCCACCTGTATTGTCT+TGG | - | chr1_1:2341252-2341271 | Msa0000960:intron | 50.0% | |
| CAGTGCCAAGACAATACAGG+TGG | + | chr1_1:2341260-2341279 | None:intergenic | 50.0% | |
| CACCTGTATTGTCTTGGCAC+TGG | - | chr1_1:2341258-2341277 | Msa0000960:intron | 50.0% | |
| CTCCAGTGCCAAGACAATAC+AGG | + | chr1_1:2341263-2341282 | None:intergenic | 50.0% | |
| GATTGAAGGGAAACCACTCC+TGG | - | chr1_1:2341690-2341709 | Msa0000960:intron | 50.0% | |
| ! | GCTATTTCACGATCCAGGAG+TGG | + | chr1_1:2341706-2341725 | None:intergenic | 50.0% |
| GTCGCAATGCCTTCGAAGAA+TGG | - | chr1_1:2341892-2341911 | Msa0000960:intron | 50.0% | |
| CGCAATGCCTTCGAAGAATG+GGG | - | chr1_1:2341894-2341913 | Msa0000960:intron | 50.0% | |
| !!! | GGGGCAGTGTTTTAAAACCC+GGG | - | chr1_1:2342004-2342023 | Msa0000960:intron | 50.0% |
| !!! | CAGTGTTTTAAAACCCGGGC+TGG | - | chr1_1:2342008-2342027 | Msa0000960:intron | 50.0% |
| !!! | GTTTTAAAACCCGGGCTGGA+TGG | - | chr1_1:2342012-2342031 | Msa0000960:intron | 50.0% |
| TGAACCGGCCAAAATTCGGA+TGG | - | chr1_1:2342109-2342128 | Msa0000960:intron | 50.0% | |
| ! | TGACCGGTCCATCCGAATTT+TGG | + | chr1_1:2342120-2342139 | None:intergenic | 50.0% |
| !! | CCGGTTCACGCAATTTTGAC+CGG | + | chr1_1:2342136-2342155 | None:intergenic | 50.0% |
| CCGGTCAAAATTGCGTGAAC+CGG | - | chr1_1:2342133-2342152 | Msa0000960:intron | 50.0% | |
| ACGTGAAACTCAGTGCATGC+GGG | + | chr1_1:2342218-2342237 | None:intergenic | 50.0% | |
| !! | AGTTGGTGAGGGCGTAAACT+GGG | + | chr1_1:2342280-2342299 | None:intergenic | 50.0% |
| !! | TAGTTGGTGAGGGCGTAAAC+TGG | + | chr1_1:2342281-2342300 | None:intergenic | 50.0% |
| ! | TGTCTTATTGAAGGCGTGCC+TGG | - | chr1_1:2342499-2342518 | Msa0000960:intron | 50.0% |
| CGACACTGACACGCTGATAT+CGG | + | chr1_1:2342596-2342615 | None:intergenic | 50.0% | |
| AGTGTCGTGTCAGTGGCATA+GGG | - | chr1_1:2342609-2342628 | Msa0000960:intron | 50.0% | |
| GGGCTGAGTTCTATCCATGA+AGG | - | chr1_1:2342956-2342975 | Msa0000960:intron | 50.0% | |
| CATAATCTAGTCGATCGGGG+TGG | + | chr1_1:2343696-2343715 | None:intergenic | 50.0% | |
| AGTTTACGCCCTATTCAGGG+AGG | - | chr1_1:2344734-2344753 | Msa0000960:intron | 50.0% | |
| GTTTACGCCCTATTCAGGGA+GGG | - | chr1_1:2344735-2344754 | Msa0000960:intron | 50.0% | |
| TTTACGCCCTATTCAGGGAG+GGG | - | chr1_1:2344736-2344755 | Msa0000960:intron | 50.0% | |
| TAAACCCCCCTCCCTGAATA+GGG | + | chr1_1:2344745-2344764 | None:intergenic | 50.0% | |
| ATAAACCCCCCTCCCTGAAT+AGG | + | chr1_1:2344746-2344765 | None:intergenic | 50.0% | |
| ACAGTGAAAGGCAGACGCTT+TGG | + | chr1_1:2344854-2344873 | None:intergenic | 50.0% | |
| AATGCTGGCGGCAATGACAT+AGG | - | chr1_1:2344982-2345001 | Msa0000960:intron | 50.0% | |
| CCAATATGACTCCTGTCAGC+TGG | + | chr1_1:2345258-2345277 | None:intergenic | 50.0% | |
| CCAGCTGACAGGAGTCATAT+TGG | - | chr1_1:2345255-2345274 | Msa0000960:intron | 50.0% | |
| CAGACCATCGAGACTCTGTT+AGG | - | chr1_1:2345867-2345886 | Msa0000960:intron | 50.0% | |
| GACACCTAACAGAGTCTCGA+TGG | + | chr1_1:2345874-2345893 | None:intergenic | 50.0% | |
| GTTGTGCTTGCAATGTGCTG+AGG | - | chr1_1:2345917-2345936 | Msa0000960:intron | 50.0% | |
| CTTGCAATGTGCTGAGGTAC+TGG | - | chr1_1:2345923-2345942 | Msa0000960:intron | 50.0% | |
| GGCTGCAAATGACTGTGAGT+TGG | - | chr1_1:2346019-2346038 | Msa0000960:intron | 50.0% | |
| ATACCAGGATTCCAGAGCAC+AGG | - | chr1_1:2346211-2346230 | Msa0000960:CDS | 50.0% | |
| CAAATGGCAAATGCAGCACG+AGG | - | chr1_1:2347236-2347255 | Msa0000960:CDS | 50.0% | |
| CACTGCAACTCCAGATCCAT+CGG | - | chr1_1:2347480-2347499 | Msa0000960:CDS | 50.0% | |
| ! | AAAGCATCTGCCGATGGATC+TGG | + | chr1_1:2347493-2347512 | None:intergenic | 50.0% |
| !! | GCTAAGAAAGCATCTGCCGA+TGG | + | chr1_1:2347499-2347518 | None:intergenic | 50.0% |
| TTCGAGGAAGAGACTCGTCG+TGG | - | chr1_1:2337127-2337146 | Msa0000960:CDS | 55.0% | |
| TGGATGTCTTCAGATCCGGC+TGG | + | chr1_1:2338437-2338456 | None:intergenic | 55.0% | |
| TGGTTCAGGGCTCACCAAAC+TGG | + | chr1_1:2339008-2339027 | None:intergenic | 55.0% | |
| TGCAGCCAGTGCTGCATAGT+TGG | - | chr1_1:2339154-2339173 | Msa0000960:intron | 55.0% | |
| CGACAGCAAGCCTCAACTCA+GGG | + | chr1_1:2339473-2339492 | None:intergenic | 55.0% | |
| !! | CCTGAGTTGAGGCTTGCTGT+CGG | - | chr1_1:2339471-2339490 | Msa0000960:intron | 55.0% |
| !! | CTGAGTTGAGGCTTGCTGTC+GGG | - | chr1_1:2339472-2339491 | Msa0000960:intron | 55.0% |
| ! | TGGCACTGGAGCGAATACCT+TGG | - | chr1_1:2341272-2341291 | Msa0000960:intron | 55.0% |
| ! | GGCACTGGAGCGAATACCTT+GGG | - | chr1_1:2341273-2341292 | Msa0000960:intron | 55.0% |
| GAGCGAATACCTTGGGCATG+AGG | - | chr1_1:2341280-2341299 | Msa0000960:intron | 55.0% | |
| CGAATACCTTGGGCATGAGG+AGG | - | chr1_1:2341283-2341302 | Msa0000960:intron | 55.0% | |
| ACAGCATGGGCGAATGTCTG+TGG | - | chr1_1:2341836-2341855 | Msa0000960:intron | 55.0% | |
| ! | GTCTGGTTTCCAGTTCGCTC+TGG | + | chr1_1:2342048-2342067 | None:intergenic | 55.0% |
| AACCAGACCCATGCCCGATT+TGG | - | chr1_1:2342060-2342079 | Msa0000960:intron | 55.0% | |
| !! | ACCCATGCCCGATTTGGTCA+GGG | - | chr1_1:2342066-2342085 | Msa0000960:intron | 55.0% |
| !! | CGGTCCATCCGAATTTTGGC+CGG | + | chr1_1:2342116-2342135 | None:intergenic | 55.0% |
| CGGCCAAAATTCGGATGGAC+CGG | - | chr1_1:2342114-2342133 | Msa0000960:intron | 55.0% | |
| GGCGTAAACTGGGGTGGATA+TGG | + | chr1_1:2342270-2342289 | None:intergenic | 55.0% | |
| ! | GTTGGTGAGGGCGTAAACTG+GGG | + | chr1_1:2342279-2342298 | None:intergenic | 55.0% |
| CAGTGTCGTGTCAGTGGCAT+AGG | - | chr1_1:2342608-2342627 | Msa0000960:intron | 55.0% | |
| CGTGTCAGTGGCATAGGGTT+TGG | - | chr1_1:2342614-2342633 | Msa0000960:intron | 55.0% | |
| TCTGGCATAGTGCCTTGACC+CGG | - | chr1_1:2342807-2342826 | Msa0000960:intron | 55.0% | |
| GGATCCCTCTCTCACGTGAA+CGG | + | chr1_1:2342866-2342885 | None:intergenic | 55.0% | |
| TGACGGGACTCCTGATGAAG+AGG | - | chr1_1:2344375-2344394 | Msa0000960:intron | 55.0% | |
| TTACGCCCTATTCAGGGAGG+GGG | - | chr1_1:2344737-2344756 | Msa0000960:intron | 55.0% | |
| CTGGCGGCAATGACATAGGA+TGG | - | chr1_1:2344986-2345005 | Msa0000960:intron | 55.0% | |
| CAGTTGGTCAGGCAGTTGCA+AGG | - | chr1_1:2345491-2345510 | Msa0000960:intron | 55.0% | |
| CGAGACTCTGTTAGGTGTCC+TGG | - | chr1_1:2345875-2345894 | Msa0000960:intron | 55.0% | |
| GCAATGCTAACTCTGGTGCC+AGG | + | chr1_1:2345896-2345915 | None:intergenic | 55.0% | |
| !! | TGACCTGTGCTCTGGAATCC+TGG | + | chr1_1:2346217-2346236 | None:intergenic | 55.0% |
| GATAGCTGTGACCTGTGCTC+TGG | + | chr1_1:2346225-2346244 | None:intergenic | 55.0% | |
| AATGCAGCACGAGGTAGCAC+CGG | - | chr1_1:2347245-2347264 | Msa0000960:CDS | 55.0% | |
| GAAGAGAAGTTCCTCGCCGC+CGG | - | chr1_1:2336672-2336691 | Msa0000960:three_prime_UTR | 60.0% | |
| CTGTTGAAGTCCGGCGATGC+CGG | + | chr1_1:2336694-2336713 | None:intergenic | 60.0% | |
| TACGAGCTTGTCCAGCACGC+CGG | - | chr1_1:2337169-2337188 | Msa0000960:CDS | 60.0% | |
| GCAAAATGTTGCCGGCGTGC+TGG | + | chr1_1:2337183-2337202 | None:intergenic | 60.0% | |
| TTGGGTGCGGATGCAGCATC+AGG | - | chr1_1:2338787-2338806 | Msa0000960:intron | 60.0% | |
| GTGCGGATGCAGCATCAGGT+TGG | - | chr1_1:2338791-2338810 | Msa0000960:intron | 60.0% | |
| CCGACAGCAAGCCTCAACTC+AGG | + | chr1_1:2339474-2339493 | None:intergenic | 60.0% | |
| !! | AGGCTTGCTGTCGGGCTTTC+TGG | - | chr1_1:2339480-2339499 | Msa0000960:intron | 60.0% |
| ! | TGTCGGGCTTTCTGGTCTGC+AGG | - | chr1_1:2339488-2339507 | Msa0000960:intron | 60.0% |
| ! | GTCGGGCTTTCTGGTCTGCA+GGG | - | chr1_1:2339489-2339508 | Msa0000960:intron | 60.0% |
| ! | TCGGGCTTTCTGGTCTGCAG+GGG | - | chr1_1:2339490-2339509 | Msa0000960:intron | 60.0% |
| CGTTTCTCCTTCTCCCGGGA+AGG | + | chr1_1:2339516-2339535 | None:intergenic | 60.0% | |
| GGGCGCTTACCCTCAACTTC+AGG | - | chr1_1:2339967-2339986 | Msa0000960:intron | 60.0% | |
| ACTACGCCTCCTCATGCCCA+AGG | + | chr1_1:2341292-2341311 | None:intergenic | 60.0% | |
| ! | GGCATGAGGAGGCGTAGTAG+AGG | - | chr1_1:2341294-2341313 | Msa0000960:intron | 60.0% |
| GTTTCCAGTTCGCTCTGGCC+CGG | + | chr1_1:2342043-2342062 | None:intergenic | 60.0% | |
| GACCAAATCGGGCATGGGTC+TGG | + | chr1_1:2342065-2342084 | None:intergenic | 60.0% | |
| !! | GACCCATGCCCGATTTGGTC+AGG | - | chr1_1:2342065-2342084 | Msa0000960:intron | 60.0% |
| GCCCTGACCAAATCGGGCAT+GGG | + | chr1_1:2342070-2342089 | None:intergenic | 60.0% | |
| TGCCCTGACCAAATCGGGCA+TGG | + | chr1_1:2342071-2342090 | None:intergenic | 60.0% | |
| GCGTGTCAGTGTCGTGTCAG+TGG | - | chr1_1:2342602-2342621 | Msa0000960:intron | 60.0% | |
| TTGGGCCGTTCACGTGAGAG+AGG | - | chr1_1:2342858-2342877 | Msa0000960:intron | 60.0% | |
| TGGGCCGTTCACGTGAGAGA+GGG | - | chr1_1:2342859-2342878 | Msa0000960:intron | 60.0% | |
| ACTCCAGCAGTGGGCATGTC+AGG | + | chr1_1:2343631-2343650 | None:intergenic | 60.0% | |
| TACGCCCTATTCAGGGAGGG+GGG | - | chr1_1:2344738-2344757 | Msa0000960:intron | 60.0% | |
| TTGAAGTCCGGCGATGCCGG+CGG | + | chr1_1:2336691-2336710 | None:intergenic | 65.0% | |
| CCGGTTCAACCATCCAGCCC+GGG | + | chr1_1:2342024-2342043 | None:intergenic | 65.0% | |
| ! | CCCGGGCTGGATGGTTGAAC+CGG | - | chr1_1:2342021-2342040 | Msa0000960:intron | 65.0% |
| CCCGGTTCAACCATCCAGCC+CGG | + | chr1_1:2342025-2342044 | None:intergenic | 65.0% | |
| ! | CCGGGCTGGATGGTTGAACC+GGG | - | chr1_1:2342022-2342041 | Msa0000960:intron | 65.0% |
| TGAACCGGGCCAGAGCGAAC+TGG | - | chr1_1:2342036-2342055 | Msa0000960:intron | 65.0% | |
| ! | GGTGAGGGCGTAAACTGGGG+TGG | + | chr1_1:2342276-2342295 | None:intergenic | 65.0% |
| CAGCCTGACATGCCCACTGC+TGG | - | chr1_1:2343625-2343644 | Msa0000960:CDS | 65.0% | |
| CTGGTCTGCAGGGGCCTTCC+CGG | - | chr1_1:2339499-2339518 | Msa0000960:intron | 70.0% | |
| TGGTCTGCAGGGGCCTTCCC+GGG | - | chr1_1:2339500-2339519 | Msa0000960:intron | 70.0% | |
| TTCCTCGCCGCCGGCATCGC+CGG | - | chr1_1:2336681-2336700 | Msa0000960:three_prime_UTR | 75.0% | |
| GCAGGGGCCTTCCCGGGAGA+AGG | - | chr1_1:2339506-2339525 | Msa0000960:intron | 75.0% | |
| ! | GTCCGGCGATGCCGGCGGCG+AGG | + | chr1_1:2336686-2336705 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 2336408 | 2347988 | 2336408 | ID=Msa0000960;Name=Msa0000960 |
| chr1_1 | mRNA | 2336408 | 2347988 | 2336408 | ID=Msa0000960-mRNA-1;Parent=Msa0000960;Name=Msa0000960-mRNA-1;_AED=0.16;_eAED=0.16;_QI=240|0.84|0.9|1|0.89|0.9|20|391|742 |
| chr1_1 | exon | 2336408 | 2337009 | 2336408 | ID=Msa0000960-mRNA-1:exon:541;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2337096 | 2337209 | 2337096 | ID=Msa0000960-mRNA-1:exon:540;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2337873 | 2337976 | 2337873 | ID=Msa0000960-mRNA-1:exon:539;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2338071 | 2338178 | 2338071 | ID=Msa0000960-mRNA-1:exon:538;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2338296 | 2338376 | 2338296 | ID=Msa0000960-mRNA-1:exon:537;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2338458 | 2338526 | 2338458 | ID=Msa0000960-mRNA-1:exon:536;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2338801 | 2338902 | 2338801 | ID=Msa0000960-mRNA-1:exon:535;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2339739 | 2339828 | 2339739 | ID=Msa0000960-mRNA-1:exon:534;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2340000 | 2340065 | 2340000 | ID=Msa0000960-mRNA-1:exon:533;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2340145 | 2340384 | 2340145 | ID=Msa0000960-mRNA-1:exon:532;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2340667 | 2340783 | 2340667 | ID=Msa0000960-mRNA-1:exon:531;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2343614 | 2343748 | 2343614 | ID=Msa0000960-mRNA-1:exon:530;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2344408 | 2344530 | 2344408 | ID=Msa0000960-mRNA-1:exon:529;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2344631 | 2344720 | 2344631 | ID=Msa0000960-mRNA-1:exon:528;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2344830 | 2344930 | 2344830 | ID=Msa0000960-mRNA-1:exon:527;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2345588 | 2345675 | 2345588 | ID=Msa0000960-mRNA-1:exon:526;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2346210 | 2346285 | 2346210 | ID=Msa0000960-mRNA-1:exon:525;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2347187 | 2347310 | 2347187 | ID=Msa0000960-mRNA-1:exon:524;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2347424 | 2347520 | 2347424 | ID=Msa0000960-mRNA-1:exon:523;Parent=Msa0000960-mRNA-1 |
| chr1_1 | exon | 2347656 | 2347988 | 2347656 | ID=Msa0000960-mRNA-1:exon:522;Parent=Msa0000960-mRNA-1 |
| chr1_1 | five_prime_UTR | 2347749 | 2347988 | 2347749 | ID=Msa0000960-mRNA-1:five_prime_utr;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2347656 | 2347748 | 2347656 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2347424 | 2347520 | 2347424 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2347187 | 2347310 | 2347187 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2346210 | 2346285 | 2346210 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2345588 | 2345675 | 2345588 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2344830 | 2344930 | 2344830 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2344631 | 2344720 | 2344631 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2344408 | 2344530 | 2344408 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2343614 | 2343748 | 2343614 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2340667 | 2340783 | 2340667 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2340145 | 2340384 | 2340145 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2340000 | 2340065 | 2340000 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2339739 | 2339828 | 2339739 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2338801 | 2338902 | 2338801 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2338458 | 2338526 | 2338458 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2338296 | 2338376 | 2338296 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2338071 | 2338178 | 2338071 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2337873 | 2337976 | 2337873 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2337096 | 2337209 | 2337096 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | CDS | 2336799 | 2337009 | 2336799 | ID=Msa0000960-mRNA-1:cds;Parent=Msa0000960-mRNA-1 |
| chr1_1 | three_prime_UTR | 2336408 | 2336798 | 2336408 | ID=Msa0000960-mRNA-1:three_prime_utr;Parent=Msa0000960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
