AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0307310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307310 MtrunA17_Chr5g0441991 97.610 544 13 0 1 544 1 544 0.0 1103
Msa0307310 MtrunA17_Chr3g0094681 56.443 551 187 8 1 543 1 506 0.0 552
Msa0307310 MtrunA17_Chr4g0046591 53.571 56 26 0 20 75 33 88 3.34e-13 72.8
Msa0307310 MtrunA17_Chr2g0282771 51.724 58 28 0 20 77 42 99 1.08e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307310 AT4G03250.1 39.254 563 262 14 3 544 4 507 3.40e-84 271
Msa0307310 AT1G28420.1 55.357 56 25 0 20 75 41 96 1.77e-14 77.4

Find 144 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTTGACCCTTGAAAT+TGG 0.130736 2_4:+220169 None:intergenic
TTCCATTGTTGTGAAGAATT+TGG 0.166089 2_4:+220025 None:intergenic
CTTCCAAACATGGACTAAAT+TGG 0.226621 2_4:+214443 None:intergenic
ACACTCCTTTGCACATTCTT+TGG 0.238382 2_4:+216068 None:intergenic
TTGACAGAAAAGCAAGTTTC+TGG 0.248103 2_4:-219053 Msa0307310:CDS
TCACTCCTTTGCGCTTTCTT+TGG 0.251232 2_4:+216005 None:intergenic
GATTGCACCTTTCGGATTTA+AGG 0.253961 2_4:+218656 None:intergenic
CCGTTGCTCTCAACCTCTTT+AGG 0.296329 2_4:+218867 None:intergenic
AAACAAGGAGCTTGTGATTA+AGG 0.299273 2_4:+220207 None:intergenic
AAGAAAGAGGGCTATCTTCT+AGG 0.323284 2_4:-215923 Msa0307310:CDS
CAGGATCGTGGCAGTGGACT+TGG 0.326571 2_4:-218939 Msa0307310:CDS
GTGCAGGATGAATTGTTTAA+AGG 0.329048 2_4:-215802 Msa0307310:intron
GTTGCATGATGTTCATGTTC+AGG 0.329068 2_4:-216366 Msa0307310:CDS
AAAAGTGTGTACAGTCTAAA+AGG 0.337825 2_4:-214731 Msa0307310:three_prime_UTR
CAAAACGCCTGCACAGCTTA+AGG 0.338384 2_4:-219228 Msa0307310:CDS
CTGAAAAGTTTGTCTATGTT+TGG 0.340704 2_4:+216313 None:intergenic
ACTGCTGTTAAGAAGCAATT+AGG 0.344355 2_4:-218570 Msa0307310:CDS
CACATGCAATTTACTAGTTA+AGG 0.352181 2_4:-214707 Msa0307310:three_prime_UTR
ACATGGTGATTATAAGTATC+TGG 0.364601 2_4:-218892 Msa0307310:CDS
CCCATGTTGATTGCACCTTT+CGG 0.370330 2_4:+218648 None:intergenic
CTCCTTCCATATGAGTATCT+TGG 0.372564 2_4:+216402 None:intergenic
GGAACCTGTTTCATATTGTA+TGG 0.374331 2_4:+215558 None:intergenic
GATCCAATTTAGTCCATGTT+TGG 0.379275 2_4:-214446 Msa0307310:three_prime_UTR
CCTTTGCACATTCTTTGGAT+TGG 0.379454 2_4:+216073 None:intergenic
CATGAACTGCATCTTCAGTT+TGG 0.386027 2_4:+218475 None:intergenic
GAATTTGATCCACTTCCTCC+TGG 0.387621 2_4:-218510 Msa0307310:CDS
AATGTAACGTAAAAGAGAAA+AGG 0.394526 2_4:+220143 None:intergenic
TGACCCCAAAATCTCAAAAC+AGG 0.398822 2_4:-220057 Msa0307310:five_prime_UTR
TTGACCCTTGAAATTGGGTT+AGG 0.400566 2_4:+220175 None:intergenic
GCAATTAGGAAGGAATTATC+AGG 0.404766 2_4:-218556 Msa0307310:CDS
CAATCAATCCAGTGAGGAAC+TGG 0.405732 2_4:+214772 None:intergenic
TGCAGGATGAATTGTTTAAA+GGG 0.406045 2_4:-215801 Msa0307310:intron
TCCTTCCATATGAGTATCTT+GGG 0.407012 2_4:+216403 None:intergenic
GCTAATTTCAATTCCTCTGT+TGG 0.408111 2_4:+219095 None:intergenic
ACAACATTGCTAAGAATCAT+AGG 0.408486 2_4:-216217 Msa0307310:CDS
CTAGAAGGCTCCATCTCATA+TGG 0.414116 2_4:+218699 None:intergenic
CTTGGTTCTATCTCAGCAAC+AGG 0.414880 2_4:+215537 None:intergenic
AAAACGCCTGCACAGCTTAA+GGG 0.415864 2_4:-219227 Msa0307310:CDS
TATCGCGATGCAGGTGGAGC+AGG 0.417846 2_4:-215757 Msa0307310:CDS
ATTGCACCTTTCGGATTTAA+GGG 0.420903 2_4:+218657 None:intergenic
AGAGTCTTCGTACAAATCTA+AGG 0.421428 2_4:+216256 None:intergenic
TCAATTTGACCCTTGAAATT+GGG 0.421790 2_4:+220170 None:intergenic
TTGTTCCTAACCCAATTTCA+AGG 0.421822 2_4:-220180 Msa0307310:five_prime_UTR
TCAACCATACAATATGAAAC+AGG 0.427437 2_4:-215562 Msa0307310:CDS
CAAACTGAAGATGCAGTTCA+TGG 0.428553 2_4:-218474 Msa0307310:intron
CAAGTCCACTGCCACGATCC+TGG 0.429748 2_4:+218940 None:intergenic
GATGCTTTCAAATGAGACTA+TGG 0.432046 2_4:-215734 Msa0307310:intron
GAAGAGCAGGATCAGCAATA+TGG 0.436376 2_4:+216916 None:intergenic
AAAGAAGAAGCAAATGCTAA+TGG 0.457102 2_4:-218990 Msa0307310:CDS
TCCAATCCCTTAAGCTGTGC+AGG 0.458833 2_4:+219221 None:intergenic
CAGGAAGATGGTCCACTACT+TGG 0.459717 2_4:-218537 Msa0307310:CDS
GCTCCATCTCATATGGATCT+TGG 0.461565 2_4:+218706 None:intergenic
CATATGGAAGGAGTTGACTT+TGG 0.462273 2_4:-216392 Msa0307310:CDS
TTTGTCTATGTTTGGTACCA+TGG 0.463442 2_4:+216321 None:intergenic
GGGTTCCAAGCGTGGTGTTG+AGG 0.465650 2_4:-216192 Msa0307310:CDS
TTTCTTCATAGCGATCACTA+TGG 0.468844 2_4:+216144 None:intergenic
GGTTCCAAGCGTGGTGTTGA+GGG 0.469940 2_4:-216191 Msa0307310:CDS
ATGAATTGTTTAAAGGGGAC+AGG 0.473398 2_4:-215795 Msa0307310:CDS
AGAGCTTTACTATATCTAGA+AGG 0.474291 2_4:+218684 None:intergenic
GGGAAGTCTGAATGTTTGAC+TGG 0.478673 2_4:+216116 None:intergenic
ATGTAACGTAAAAGAGAAAA+GGG 0.479183 2_4:+220144 None:intergenic
TCAAATGCCCCAGGAGGAAG+TGG 0.480809 2_4:+218501 None:intergenic
TCTGGAGAATTCAGAAGAGC+AGG 0.481510 2_4:+216903 None:intergenic
GTCATCCAGGATCGTGGCAG+TGG 0.484263 2_4:-218945 Msa0307310:CDS
GCCTGCACAGCTTAAGGGAT+TGG 0.485122 2_4:-219222 Msa0307310:CDS
CATACCCTCAACACCACGCT+TGG 0.488556 2_4:+216187 None:intergenic
GATTTGTACGAAGACTCTAC+TGG 0.489485 2_4:-216251 Msa0307310:CDS
TGCTGATACCAGTTCCTCAC+TGG 0.497663 2_4:-214780 Msa0307310:CDS
CAGAAAAGCAAGTTTCTGGA+TGG 0.513041 2_4:-219049 Msa0307310:CDS
TGGTTCCCAAGATACTCATA+TGG 0.513127 2_4:-216408 Msa0307310:CDS
TTCCAAATTCTTCACAACAA+TGG 0.516500 2_4:-220027 Msa0307310:exon
AACATGGGATATAAGCCATC+GGG 0.524849 2_4:-218633 Msa0307310:CDS
TCTAAGGAAGAGTTCCTGCC+AGG 0.525417 2_4:+216272 None:intergenic
AATTTGATCCACTTCCTCCT+GGG 0.526950 2_4:-218509 Msa0307310:CDS
TCGTTCAAGCGGTGTCATCC+AGG 0.527070 2_4:-218958 Msa0307310:CDS
TTCTGAAAATGTCAGTGGAA+TGG 0.528577 2_4:-218787 Msa0307310:CDS
GTTTGGCATTCAAATGCCCC+AGG 0.531719 2_4:+218492 None:intergenic
GAATTGTGGATTGAGTTTGA+AGG 0.540955 2_4:+215966 None:intergenic
ATCGGGATATTTGAAAGTGA+AGG 0.542663 2_4:-218616 Msa0307310:CDS
GCAGGATCAGCAATATGGTA+TGG 0.543728 2_4:+216921 None:intergenic
GCTATCTTCTAGGATGACTA+AGG 0.550617 2_4:-215913 Msa0307310:intron
CAAGAACGTTTGTATCCTCA+AGG 0.550906 2_4:-218729 Msa0307310:CDS
AGGATCGTGGCAGTGGACTT+GGG 0.551473 2_4:-218938 Msa0307310:CDS
TGTTCCTAACCCAATTTCAA+GGG 0.554438 2_4:-220179 Msa0307310:five_prime_UTR
AAATTCTTCACAACAATGGA+AGG 0.554885 2_4:-220023 Msa0307310:intron
TAAGTATCTGGATCCTAAAG+AGG 0.555927 2_4:-218880 Msa0307310:CDS
GGAAGGAATTATCAGGAAGA+TGG 0.556235 2_4:-218549 Msa0307310:CDS
TTCACTTTCAAATATCCCGA+TGG 0.557109 2_4:+218618 None:intergenic
CCACAGAACCTCGAGAATTG+TGG 0.558056 2_4:+215952 None:intergenic
TCATATGGATCTTGGCCTTG+AGG 0.561124 2_4:+218714 None:intergenic
CATTGCTAAGAATCATAGGA+AGG 0.564383 2_4:-216213 Msa0307310:CDS
CCACAATTCTCGAGGTTCTG+TGG 0.566754 2_4:-215952 Msa0307310:CDS
ATCGCGATGCAGGTGGAGCA+GGG 0.572378 2_4:-215756 Msa0307310:CDS
AAGCAATATCGCGATGCAGG+TGG 0.577401 2_4:-215763 Msa0307310:CDS
CAGATATGACGTACGGACGC+AGG 0.578687 2_4:-218818 Msa0307310:CDS
AGGCCAAGATCCATATGAGA+TGG 0.579497 2_4:-218709 Msa0307310:CDS
TCCGAAAGGTGCAATCAACA+TGG 0.580879 2_4:-218649 Msa0307310:CDS
GATTCATATTATACTAAACA+TGG 0.583805 2_4:-216428 Msa0307310:CDS
AGTTAAGGCAGTAGTAACAT+TGG 0.585447 2_4:-214692 Msa0307310:three_prime_UTR
GTATCTAACTCTTCCAAACA+TGG 0.585852 2_4:+214433 None:intergenic
CTACTTACAGAGCTAAGACC+AGG 0.590912 2_4:+216858 None:intergenic
TCCCAAGATACTCATATGGA+AGG 0.591524 2_4:-216404 Msa0307310:CDS
AACTCAATCCACAATTCTCG+AGG 0.592657 2_4:-215960 Msa0307310:CDS
CAAGATAAGAAAGCTTTCCA+TGG 0.592693 2_4:-216338 Msa0307310:CDS
CAACATGGGATATAAGCCAT+CGG 0.596722 2_4:-218634 Msa0307310:CDS
ATTTGATCCACTTCCTCCTG+GGG 0.597335 2_4:-218508 Msa0307310:CDS
CATAGGAAGGGTTCCAAGCG+TGG 0.601850 2_4:-216200 Msa0307310:CDS
CCAAAATCTCAAAACAGGAT+CGG 0.602221 2_4:-220052 Msa0307310:five_prime_UTR
ATTGTTTAAAGGGGACAGGA+AGG 0.604577 2_4:-215791 Msa0307310:CDS
AGTCTGAATGTTTGACTGGG+AGG 0.604885 2_4:+216120 None:intergenic
TCGGGATATTTGAAAGTGAA+GGG 0.606990 2_4:-218615 Msa0307310:CDS
CTAGATTGACATGAATATGA+GGG 0.607282 2_4:+214365 None:intergenic
TCATCCTCGCTAAAGCTAGA+CGG 0.613881 2_4:+214806 None:intergenic
CTGTGGATACTGAAGAAAGA+GGG 0.615063 2_4:-215935 Msa0307310:CDS
TCCACAGTGAAAAGTCGACC+TGG 0.615507 2_4:-216876 Msa0307310:CDS
GTTCCTGCCAGGAAAACGAC+TGG 0.617478 2_4:+216283 None:intergenic
CTTTGATGTTGCACTAAACG+TGG 0.620003 2_4:-214568 Msa0307310:three_prime_UTR
TCAAATTCTACACCAAGTAG+TGG 0.621557 2_4:+218525 None:intergenic
ATTGCTAAGAATCATAGGAA+GGG 0.627649 2_4:-216212 Msa0307310:CDS
CCTAAAGAGGTTGAGAGCAA+CGG 0.628717 2_4:-218867 Msa0307310:CDS
ATTGAAATTAGCAATTGCTG+AGG 0.629418 2_4:-219084 Msa0307310:CDS
TCTGTTGCAGATATGACGTA+CGG 0.637863 2_4:-218825 Msa0307310:CDS
CTTCCACCCTTAAATCCGAA+AGG 0.637927 2_4:-218663 Msa0307310:CDS
AGCGGTGTCATCCAGGATCG+TGG 0.640192 2_4:-218951 Msa0307310:CDS
GCAGGATGAATTGTTTAAAG+GGG 0.640528 2_4:-215800 Msa0307310:intron
TCGTGTGGAAGCAGTAAACA+TGG 0.646504 2_4:-218909 Msa0307310:CDS
CTGTTAAGAAGCAATTAGGA+AGG 0.648535 2_4:-218566 Msa0307310:CDS
CAGACAAATCACGATTGTAG+AGG 0.656746 2_4:+218844 None:intergenic
GGACTTGGGCAAGATTCGTG+TGG 0.658289 2_4:-218924 Msa0307310:CDS
TCTGTGGATACTGAAGAAAG+AGG 0.660423 2_4:-215936 Msa0307310:CDS
CCGAAAGGTGCAATCAACAT+GGG 0.662695 2_4:-218648 Msa0307310:CDS
CCAATCCAAAGAATGTGCAA+AGG 0.663942 2_4:-216073 Msa0307310:CDS
GGAAGTCTGAATGTTTGACT+GGG 0.668574 2_4:+216117 None:intergenic
GCACCTTTCGGATTTAAGGG+TGG 0.674376 2_4:+218660 None:intergenic
CAAGGAGCTTGTGATTAAGG+CGG 0.678761 2_4:+220210 None:intergenic
GGACGACAAGATCGTTCAAG+CGG 0.685566 2_4:-218969 Msa0307310:CDS
TGGCATTCAAATGCCCCAGG+AGG 0.687115 2_4:+218495 None:intergenic
TCAATCCAAAGAAAGCGCAA+AGG 0.687671 2_4:-216010 Msa0307310:CDS
AGAGCACAAATATCCAACAG+AGG 0.705663 2_4:-219108 Msa0307310:CDS
AGAAGAAAATAAAGTCTCTG+CGG 0.706177 2_4:-219273 Msa0307310:CDS
TAGAACCAAGGAAAACTCAG+AGG 0.706448 2_4:-215524 Msa0307310:intron
GATGCCGTCTAGCTTTAGCG+AGG 0.724075 2_4:-214810 Msa0307310:CDS
ACAAAACAATCAATCCAGTG+AGG 0.737591 2_4:+214766 None:intergenic
CTGTTGCTGAGATAGAACCA+AGG 0.743299 2_4:-215536 Msa0307310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATTATAATTGAAATT+AGG - chr2_4:214914-214933 Msa0307310:intron 10.0%
!! CATAAAATAATTTAAATAAC+TGG + chr2_4:216687-216706 None:intergenic 10.0%
!! TTAATCAAATTAATTTCATT+CGG - chr2_4:219708-219727 Msa0307310:intron 10.0%
!!! TTTATTTTCTTAATTTTTAC+TGG - chr2_4:219778-219797 Msa0307310:intron 10.0%
!!! GTCTTTTAATTTTTAATTTT+GGG - chr2_4:220124-220143 Msa0307310:five_prime_UTR 10.0%
!!! TTAATTAGTTTCCTTAAAAT+TGG - chr2_4:217095-217114 Msa0307310:intron 15.0%
!! GAGCAAAAATAAATTTATAT+TGG + chr2_4:217568-217587 None:intergenic 15.0%
!!! GGTCTTTTAATTTTTAATTT+TGG - chr2_4:220123-220142 Msa0307310:five_prime_UTR 15.0%
!!! TTTTATTCTTATTAGCGATT+TGG - chr2_4:214690-214709 Msa0307310:three_prime_UTR 20.0%
!! TTTATTCTTATTAGCGATTT+GGG - chr2_4:214691-214710 Msa0307310:three_prime_UTR 20.0%
!! TTTCATATAACTAATAGAAC+GGG + chr2_4:216264-216283 None:intergenic 20.0%
!! GTTTCATATAACTAATAGAA+CGG + chr2_4:216265-216284 None:intergenic 20.0%
!!! ATGAAACTAAAATGTTGTTT+AGG - chr2_4:216278-216297 Msa0307310:CDS 20.0%
!!! TTTGATTTTTCAAAACTGTT+AGG - chr2_4:216766-216785 Msa0307310:intron 20.0%
!! ATTCATTTATGTTATACAAC+CGG - chr2_4:217008-217027 Msa0307310:intron 20.0%
!!! GGATTAGAAATTTAGAATAT+AGG - chr2_4:217160-217179 Msa0307310:intron 20.0%
!!! AAATTTAGAATATAGGTTCT+AGG - chr2_4:217167-217186 Msa0307310:intron 20.0%
!! ATGATGCTATTCTTAAAATT+TGG - chr2_4:217263-217282 Msa0307310:intron 20.0%
!!! GAAATATTTCTAGAAAAACA+TGG + chr2_4:217594-217613 None:intergenic 20.0%
!! TATTGAAAGCGAAAATAAAT+CGG + chr2_4:217640-217659 None:intergenic 20.0%
!! AATTAAATGACTTGAAACAA+TGG + chr2_4:218060-218079 None:intergenic 20.0%
!! GATTCATATTATACTAAACA+TGG - chr2_4:218242-218261 Msa0307310:intron 20.0%
!! ATTAAGAAAATAAAACTGTG+AGG + chr2_4:219772-219791 None:intergenic 20.0%
!!! TTTTTCTTGTAGTTTAATTG+TGG - chr2_4:220178-220197 Msa0307310:five_prime_UTR 20.0%
! ATGTAACGTAAAAGAGAAAA+GGG + chr2_4:214529-214548 None:intergenic 25.0%
! AATGTAACGTAAAAGAGAAA+AGG + chr2_4:214530-214549 None:intergenic 25.0%
!! ACATTCTCTTTTACGTTAAA+TGG - chr2_4:214545-214564 Msa0307310:three_prime_UTR 25.0%
!! CATTCTCTTTTACGTTAAAT+GGG - chr2_4:214546-214565 Msa0307310:three_prime_UTR 25.0%
! ATTGAGATTGAATCAATGTT+AGG - chr2_4:214752-214771 Msa0307310:three_prime_UTR 25.0%
! TGACATAAAGGACTTAAATT+TGG - chr2_4:214833-214852 Msa0307310:intron 25.0%
! GACATAAAGGACTTAAATTT+GGG - chr2_4:214834-214853 Msa0307310:intron 25.0%
! ACATAAAGGACTTAAATTTG+GGG - chr2_4:214835-214854 Msa0307310:intron 25.0%
! AGTTAAAGAAATAAGCTTTC+TGG - chr2_4:215159-215178 Msa0307310:intron 25.0%
! ATAAGATATACAACAATCAC+AGG + chr2_4:215289-215308 None:intergenic 25.0%
!! ATCTTTTATCCTTTAACCTT+CGG + chr2_4:215655-215674 None:intergenic 25.0%
!! ATCATTTAGGATAAAGGAAT+AGG - chr2_4:216326-216345 Msa0307310:CDS 25.0%
! TGTTAGTATTAATACTACCA+AGG - chr2_4:216551-216570 Msa0307310:intron 25.0%
! CTTATCAAGTTAATTGTCAT+TGG + chr2_4:216577-216596 None:intergenic 25.0%
!! CAATGACAATTAACTTGATA+AGG - chr2_4:216575-216594 Msa0307310:intron 25.0%
! TAAAAAATTGAGCTACATCA+AGG + chr2_4:216802-216821 None:intergenic 25.0%
! ACATATAAATAGACAGATGT+AGG - chr2_4:216883-216902 Msa0307310:CDS 25.0%
! ATATATAGTGAGAAAATGAG+AGG - chr2_4:216917-216936 Msa0307310:CDS 25.0%
! GGTTGTATAACATAAATGAA+TGG + chr2_4:217009-217028 None:intergenic 25.0%
!! TTTATCTAGTCCATATTTTG+AGG - chr2_4:217062-217081 Msa0307310:intron 25.0%
!!! TTATCTAGTCCATATTTTGA+GGG - chr2_4:217063-217082 Msa0307310:intron 25.0%
!! GAATAAGCTATCCAATTTTA+AGG + chr2_4:217109-217128 None:intergenic 25.0%
! ATCCTAATACCTTAAAAACA+CGG + chr2_4:217144-217163 None:intergenic 25.0%
! TCTATCCTAAATATGATACT+GGG + chr2_4:217241-217260 None:intergenic 25.0%
! TCAACAACTATATTAGAATC+TGG - chr2_4:217376-217395 Msa0307310:intron 25.0%
! CAACAACTATATTAGAATCT+GGG - chr2_4:217377-217396 Msa0307310:intron 25.0%
! TTCTTACCTTTGTATTGTTA+TGG - chr2_4:217712-217731 Msa0307310:intron 25.0%
! CATGGAAAAACTTAATTACT+AGG + chr2_4:217870-217889 None:intergenic 25.0%
!! CTAGTAATTAAGTTTTTCCA+TGG - chr2_4:217868-217887 Msa0307310:intron 25.0%
!! AATTAAGTTTTTCCATGGAA+TGG - chr2_4:217873-217892 Msa0307310:intron 25.0%
!! ATTAAGTTTTTCCATGGAAT+GGG - chr2_4:217874-217893 Msa0307310:intron 25.0%
! CAAATCAATGATGATTTACA+AGG - chr2_4:217912-217931 Msa0307310:intron 25.0%
! AAAATTAAATGCAGCTGAAA+TGG - chr2_4:217940-217959 Msa0307310:intron 25.0%
! TAACCAAAGTAAGAAGTTAA+AGG + chr2_4:217995-218014 None:intergenic 25.0%
! TAACTTCTTACTTTGGTTAA+AGG - chr2_4:217996-218015 Msa0307310:intron 25.0%
! AACTTCTTACTTTGGTTAAA+GGG - chr2_4:217997-218016 Msa0307310:intron 25.0%
! AAGAAGTGAATGATATTTGT+AGG - chr2_4:218024-218043 Msa0307310:intron 25.0%
!! TTGCAAGAGAAACTTTTAAA+CGG - chr2_4:218078-218097 Msa0307310:intron 25.0%
! AATTACTATGAGCACTTATA+CGG + chr2_4:218122-218141 None:intergenic 25.0%
!! TGTTTTCATAGTTATACTGT+GGG + chr2_4:218577-218596 None:intergenic 25.0%
! CAATTTATTCTGCTTACAAA+TGG - chr2_4:218817-218836 Msa0307310:CDS 25.0%
!!! TGATTTTCTGAAAGCATAAT+AGG + chr2_4:219273-219292 None:intergenic 25.0%
! AATGTTCAATAGTAAGCTTT+CGG - chr2_4:219304-219323 Msa0307310:intron 25.0%
!! TTCTTAATTTTTACTGGATG+TGG - chr2_4:219784-219803 Msa0307310:intron 25.0%
!!! TTTCTTTTTTCAAAGGCAAT+AGG + chr2_4:220064-220083 None:intergenic 25.0%
!! TTGCCTTTGAAAAAAGAAAT+TGG - chr2_4:220065-220084 Msa0307310:five_prime_UTR 25.0%
!!! ACACCAATTTCTTTTTTCAA+AGG + chr2_4:220071-220090 None:intergenic 25.0%
GTTAGGAACAAAGAAAAACA+AGG + chr2_4:214481-214500 None:intergenic 30.0%
TCAATTTGACCCTTGAAATT+GGG + chr2_4:214503-214522 None:intergenic 30.0%
TTCAATTTGACCCTTGAAAT+TGG + chr2_4:214504-214523 None:intergenic 30.0%
TTCCAAATTCTTCACAACAA+TGG - chr2_4:214643-214662 Msa0307310:three_prime_UTR 30.0%
TTCCATTGTTGTGAAGAATT+TGG + chr2_4:214648-214667 None:intergenic 30.0%
AAATTCTTCACAACAATGGA+AGG - chr2_4:214647-214666 Msa0307310:three_prime_UTR 30.0%
TTAGGTTCGAATCTACAATA+TGG - chr2_4:214770-214789 Msa0307310:exon 30.0%
! ATATGGATTGTTTGCATTAC+AGG - chr2_4:214787-214806 Msa0307310:CDS 30.0%
! TATGGATTGTTTGCATTACA+GGG - chr2_4:214788-214807 Msa0307310:CDS 30.0%
AGAAAGTGAGTCAAACTTAA+GGG - chr2_4:214871-214890 Msa0307310:intron 30.0%
! TCAAACTTAAGGGTATGAAA+GGG - chr2_4:214881-214900 Msa0307310:intron 30.0%
TCATGTATGAGATTTCATGT+TGG - chr2_4:215227-215246 Msa0307310:intron 30.0%
AGAAGAAAATAAAGTCTCTG+CGG - chr2_4:215397-215416 Msa0307310:intron 30.0%
! GGGATTGGAGAAATTTTATA+CGG - chr2_4:215463-215482 Msa0307310:intron 30.0%
! GGATTGGAGAAATTTTATAC+GGG - chr2_4:215464-215483 Msa0307310:intron 30.0%
TTCAACAAAAATCATCACAG+AGG + chr2_4:215520-215539 None:intergenic 30.0%
ATTGAAATTAGCAATTGCTG+AGG - chr2_4:215586-215605 Msa0307310:CDS 30.0%
AAAGAAGAAGCAAATGCTAA+TGG - chr2_4:215680-215699 Msa0307310:intron 30.0%
ACATGGTGATTATAAGTATC+TGG - chr2_4:215778-215797 Msa0307310:CDS 30.0%
!! CATTTTTCTGAAAATGTCAG+TGG - chr2_4:215878-215897 Msa0307310:intron 30.0%
AGAGCTTTACTATATCTAGA+AGG + chr2_4:215989-216008 None:intergenic 30.0%
! TGTTGTTTAGGTTTGAAACT+TGG - chr2_4:216290-216309 Msa0307310:CDS 30.0%
AACAATGTAGCTGATCATTT+AGG - chr2_4:216313-216332 Msa0307310:CDS 30.0%
! TAGCTGATCATTTAGGATAA+AGG - chr2_4:216320-216339 Msa0307310:CDS 30.0%
CATCACGTTGTAATAATGTT+AGG - chr2_4:216356-216375 Msa0307310:CDS 30.0%
GAATGCTTAAAGATAGATCT+CGG - chr2_4:216403-216422 Msa0307310:CDS 30.0%
GGCTTATAAGTTATGACTTA+AGG + chr2_4:216666-216685 None:intergenic 30.0%
GAATTAGTATTTGCTTGATC+TGG - chr2_4:216841-216860 Msa0307310:intron 30.0%
ATAAATAGACAGATGTAGGT+AGG - chr2_4:216887-216906 Msa0307310:CDS 30.0%
TGCAATTATGAGAAGAATAC+CGG + chr2_4:217030-217049 None:intergenic 30.0%
AAAAACACGGCATTATCTTT+CGG + chr2_4:217131-217150 None:intergenic 30.0%
!! AAGATAATGCCGTGTTTTTA+AGG - chr2_4:217132-217151 Msa0307310:intron 30.0%
GTCTATCCTAAATATGATAC+TGG + chr2_4:217242-217261 None:intergenic 30.0%
AGCATAATAATCTTTGTGCA+AGG - chr2_4:217522-217541 Msa0307310:intron 30.0%
GAAATATTTCATCGTAGCTA+AGG - chr2_4:217604-217623 Msa0307310:intron 30.0%
TAGCATCCATAACAATACAA+AGG + chr2_4:217721-217740 None:intergenic 30.0%
AAAATGAGAACGCATTAGAA+AGG + chr2_4:217839-217858 None:intergenic 30.0%
! AGTCCTTTAACTTCTTACTT+TGG - chr2_4:217989-218008 Msa0307310:intron 30.0%
CTGAAAAGTTTGTCTATGTT+TGG + chr2_4:218360-218379 None:intergenic 30.0%
ACAACATTGCTAAGAATCAT+AGG - chr2_4:218453-218472 Msa0307310:intron 30.0%
ATTGCTAAGAATCATAGGAA+GGG - chr2_4:218458-218477 Msa0307310:intron 30.0%
! GTGTTTTCATAGTTATACTG+TGG + chr2_4:218578-218597 None:intergenic 30.0%
TGCAGGATGAATTGTTTAAA+GGG - chr2_4:218869-218888 Msa0307310:CDS 30.0%
! ATAATCACATTCTAGAGATG+CGG + chr2_4:218986-219005 None:intergenic 30.0%
! TTTTGCTTTGGTATGTGTAT+AGG - chr2_4:219057-219076 Msa0307310:CDS 30.0%
TCAACCATACAATATGAAAC+AGG - chr2_4:219108-219127 Msa0307310:CDS 30.0%
! AAAAAGGTGGTTTTCACAAA+TGG + chr2_4:219360-219379 None:intergenic 30.0%
TCCTCTTATCTTCATTAAAG+AGG + chr2_4:219383-219402 None:intergenic 30.0%
!! TTGCATCAAACTTGCTTTTA+TGG - chr2_4:219622-219641 Msa0307310:intron 30.0%
AGAAAATAAAACTGTGAGGT+TGG + chr2_4:219768-219787 None:intergenic 30.0%
! AAAAGTGTGTACAGTCTAAA+AGG - chr2_4:219939-219958 Msa0307310:intron 30.0%
CACATGCAATTTACTAGTTA+AGG - chr2_4:219963-219982 Msa0307310:intron 30.0%
! TAATTTTGGGCATTTGATGT+AGG - chr2_4:220137-220156 Msa0307310:five_prime_UTR 30.0%
AAACAAGGAGCTTGTGATTA+AGG + chr2_4:214466-214485 None:intergenic 35.0%
TTGTTCCTAACCCAATTTCA+AGG - chr2_4:214490-214509 Msa0307310:three_prime_UTR 35.0%
TGTTCCTAACCCAATTTCAA+GGG - chr2_4:214491-214510 Msa0307310:three_prime_UTR 35.0%
!!! TGAGATTTTGGGGTCAAAAA+AGG + chr2_4:214609-214628 None:intergenic 35.0%
!!! GATCCTGTTTTGAGATTTTG+GGG + chr2_4:214619-214638 None:intergenic 35.0%
!!! CGATCCTGTTTTGAGATTTT+GGG + chr2_4:214620-214639 None:intergenic 35.0%
CCAAAATCTCAAAACAGGAT+CGG - chr2_4:214618-214637 Msa0307310:three_prime_UTR 35.0%
! GATTTGGGTCATTCATTTTG+TGG - chr2_4:214706-214725 Msa0307310:three_prime_UTR 35.0%
!! CAATGGTGGATTTGACATAA+AGG - chr2_4:214821-214840 Msa0307310:CDS 35.0%
! GACTTAAATTTGGGGTCTTT+GGG - chr2_4:214843-214862 Msa0307310:intron 35.0%
GAGAAAGTGAGTCAAACTTA+AGG - chr2_4:214870-214889 Msa0307310:intron 35.0%
! GTCAAACTTAAGGGTATGAA+AGG - chr2_4:214880-214899 Msa0307310:intron 35.0%
! CAAACTTAAGGGTATGAAAG+GGG - chr2_4:214882-214901 Msa0307310:intron 35.0%
AAGTAGATCCAAGTGGTTTA+TGG + chr2_4:215011-215030 None:intergenic 35.0%
TCTACTTTCTGTGTGAGATA+AGG - chr2_4:215024-215043 Msa0307310:intron 35.0%
CTACTTTCTGTGTGAGATAA+GGG - chr2_4:215025-215044 Msa0307310:intron 35.0%
TTTGTTGACATAGCACAAGA+TGG - chr2_4:215260-215279 Msa0307310:intron 35.0%
TAAACTTCTTGCTTCTCGTT+TGG - chr2_4:215348-215367 Msa0307310:intron 35.0%
!!! GCAGAGACTTTATTTTCTTC+TGG + chr2_4:215398-215417 None:intergenic 35.0%
! TGGAGAAATTTTATACGGGT+AGG - chr2_4:215468-215487 Msa0307310:intron 35.0%
! GGAGAAATTTTATACGGGTA+GGG - chr2_4:215469-215488 Msa0307310:intron 35.0%
!! TATTTGTGCTCTGGAAACAA+AGG + chr2_4:215554-215573 None:intergenic 35.0%
GCTAATTTCAATTCCTCTGT+TGG + chr2_4:215578-215597 None:intergenic 35.0%
TTGACAGAAAAGCAAGTTTC+TGG - chr2_4:215617-215636 Msa0307310:intron 35.0%
TAAGTATCTGGATCCTAAAG+AGG - chr2_4:215790-215809 Msa0307310:CDS 35.0%
! TTCTGAAAATGTCAGTGGAA+TGG - chr2_4:215883-215902 Msa0307310:intron 35.0%
ATTGCACCTTTCGGATTTAA+GGG + chr2_4:216016-216035 None:intergenic 35.0%
TTCACTTTCAAATATCCCGA+TGG + chr2_4:216055-216074 None:intergenic 35.0%
ATCGGGATATTTGAAAGTGA+AGG - chr2_4:216054-216073 Msa0307310:CDS 35.0%
TCGGGATATTTGAAAGTGAA+GGG - chr2_4:216055-216074 Msa0307310:CDS 35.0%
ACTGCTGTTAAGAAGCAATT+AGG - chr2_4:216100-216119 Msa0307310:CDS 35.0%
CTGTTAAGAAGCAATTAGGA+AGG - chr2_4:216104-216123 Msa0307310:CDS 35.0%
GCAATTAGGAAGGAATTATC+AGG - chr2_4:216114-216133 Msa0307310:CDS 35.0%
TCAAATTCTACACCAAGTAG+TGG + chr2_4:216148-216167 None:intergenic 35.0%
GAAAGAAAAACGGGGAAATA+GGG + chr2_4:216236-216255 None:intergenic 35.0%
ATAACTAATAGAACGGGAAC+TGG + chr2_4:216258-216277 None:intergenic 35.0%
ATGTTCATGTGCTATGCATT+GGG - chr2_4:216493-216512 Msa0307310:intron 35.0%
! AAGTTAATTGTCATTGGCCT+TGG + chr2_4:216571-216590 None:intergenic 35.0%
TTCTTGAAACAACTTAGTCC+TGG + chr2_4:216746-216765 None:intergenic 35.0%
CTTGACTATTAGTGTATCGT+GGG + chr2_4:216959-216978 None:intergenic 35.0%
TCTTGACTATTAGTGTATCG+TGG + chr2_4:216960-216979 None:intergenic 35.0%
!!! TGCCGTGTTTTTAAGGTATT+AGG - chr2_4:217139-217158 Msa0307310:intron 35.0%
!! TTAGAATATAGGTTCTAGGC+TGG - chr2_4:217171-217190 Msa0307310:intron 35.0%
AGTGTCCCAGTATCATATTT+AGG - chr2_4:217233-217252 Msa0307310:intron 35.0%
!! CGGTTTTTAAGAGTTGAGTT+AGG + chr2_4:217295-217314 None:intergenic 35.0%
CTCTTAAAAACCGTCTTGTA+AGG - chr2_4:217302-217321 Msa0307310:intron 35.0%
AAAAACCGTCTTGTAAGGTA+AGG - chr2_4:217307-217326 Msa0307310:intron 35.0%
! AACCCAAAAAGCTAGCTTAA+GGG - chr2_4:217408-217427 Msa0307310:intron 35.0%
CGTTTGCTCAAGTCTTTATA+AGG - chr2_4:217435-217454 Msa0307310:intron 35.0%
!!! AGGTGTTGTTTTGCTTGTTT+AGG - chr2_4:217542-217561 Msa0307310:intron 35.0%
CAGTTGCTACATTTATGAAC+AGG + chr2_4:218158-218177 None:intergenic 35.0%
TAAAAGAGAGTGAGAAAGCA+GGG + chr2_4:218201-218220 None:intergenic 35.0%
TCCTTCCATATGAGTATCTT+GGG + chr2_4:218270-218289 None:intergenic 35.0%
CAAGATAAGAAAGCTTTCCA+TGG - chr2_4:218332-218351 Msa0307310:intron 35.0%
TTTGTCTATGTTTGGTACCA+TGG + chr2_4:218352-218371 None:intergenic 35.0%
AGAGTCTTCGTACAAATCTA+AGG + chr2_4:218417-218436 None:intergenic 35.0%
CATTGCTAAGAATCATAGGA+AGG - chr2_4:218457-218476 Msa0307310:intron 35.0%
TTTCTTCATAGCGATCACTA+TGG + chr2_4:218529-218548 None:intergenic 35.0%
! GAATTGTGGATTGAGTTTGA+AGG + chr2_4:218707-218726 None:intergenic 35.0%
! ATATTTTGTTGCATGTGTGC+AGG - chr2_4:218852-218871 Msa0307310:CDS 35.0%
GTGCAGGATGAATTGTTTAA+AGG - chr2_4:218868-218887 Msa0307310:CDS 35.0%
GCAGGATGAATTGTTTAAAG+GGG - chr2_4:218870-218889 Msa0307310:CDS 35.0%
ATGAATTGTTTAAAGGGGAC+AGG - chr2_4:218875-218894 Msa0307310:CDS 35.0%
GATGCTTTCAAATGAGACTA+TGG - chr2_4:218936-218955 Msa0307310:CDS 35.0%
! TAATCACATTCTAGAGATGC+GGG + chr2_4:218985-219004 None:intergenic 35.0%
GGAACCTGTTTCATATTGTA+TGG + chr2_4:219115-219134 None:intergenic 35.0%
TAAGCTCCAAAACTTCTAAG+AGG + chr2_4:219217-219236 None:intergenic 35.0%
TTGGTAAATTGAGCTCAATG+TGG - chr2_4:219429-219448 Msa0307310:intron 35.0%
!! TTTACAAAGGTGCTTCTAGT+GGG + chr2_4:219487-219506 None:intergenic 35.0%
!!! TTTTACAAAGGTGCTTCTAG+TGG + chr2_4:219488-219507 None:intergenic 35.0%
!! CTAGAAGCACCTTTGTAAAA+AGG - chr2_4:219488-219507 Msa0307310:intron 35.0%
! TAGGGCATACCTTTTTACAA+AGG + chr2_4:219500-219519 None:intergenic 35.0%
AACTAAACTAAACCCTGCTA+GGG + chr2_4:219518-219537 None:intergenic 35.0%
GCACAATGTTGTTAGAAACA+GGG + chr2_4:219810-219829 None:intergenic 35.0%
TGCACAATGTTGTTAGAAAC+AGG + chr2_4:219811-219830 None:intergenic 35.0%
ACAAAACAATCAATCCAGTG+AGG + chr2_4:219907-219926 None:intergenic 35.0%
AGTTAAGGCAGTAGTAACAT+TGG - chr2_4:219978-219997 Msa0307310:intron 35.0%
GATCCAATTTAGTCCATGTT+TGG - chr2_4:220224-220243 Msa0307310:five_prime_UTR 35.0%
! CTTCCAAACATGGACTAAAT+TGG + chr2_4:220230-220249 None:intergenic 35.0%
GTATCTAACTCTTCCAAACA+TGG + chr2_4:220240-220259 None:intergenic 35.0%
TTGACCCTTGAAATTGGGTT+AGG + chr2_4:214498-214517 None:intergenic 40.0%
TGACCCCAAAATCTCAAAAC+AGG - chr2_4:214613-214632 Msa0307310:three_prime_UTR 40.0%
!!! CCGATCCTGTTTTGAGATTT+TGG + chr2_4:214621-214640 None:intergenic 40.0%
TACAGGGTAGATTGTTGCAA+TGG - chr2_4:214804-214823 Msa0307310:CDS 40.0%
! GGACTTAAATTTGGGGTCTT+TGG - chr2_4:214842-214861 Msa0307310:intron 40.0%
! TTAAGGGTATGAAAGGGGTT+TGG - chr2_4:214887-214906 Msa0307310:intron 40.0%
GTCATTGACCATAAACCACT+TGG - chr2_4:215000-215019 Msa0307310:intron 40.0%
ACACAGAAAGTAGATCCAAG+TGG + chr2_4:215018-215037 None:intergenic 40.0%
!! GGCGTTTTGAGCTTTCTTTT+CGG + chr2_4:215431-215450 None:intergenic 40.0%
TCTGTTGGATATTTGTGCTC+TGG + chr2_4:215563-215582 None:intergenic 40.0%
AGAGCACAAATATCCAACAG+AGG - chr2_4:215562-215581 Msa0307310:CDS 40.0%
! CAGAAAAGCAAGTTTCTGGA+TGG - chr2_4:215621-215640 Msa0307310:intron 40.0%
! GTTTTGTCACCGAAGGTTAA+AGG - chr2_4:215643-215662 Msa0307310:intron 40.0%
CAGACAAATCACGATTGTAG+AGG + chr2_4:215829-215848 None:intergenic 40.0%
TCTGTTGCAGATATGACGTA+CGG - chr2_4:215845-215864 Msa0307310:intron 40.0%
CAAGAACGTTTGTATCCTCA+AGG - chr2_4:215941-215960 Msa0307310:CDS 40.0%
GATTGCACCTTTCGGATTTA+AGG + chr2_4:216017-216036 None:intergenic 40.0%
CAACATGGGATATAAGCCAT+CGG - chr2_4:216036-216055 Msa0307310:CDS 40.0%
AACATGGGATATAAGCCATC+GGG - chr2_4:216037-216056 Msa0307310:CDS 40.0%
GGAAGGAATTATCAGGAAGA+TGG - chr2_4:216121-216140 Msa0307310:CDS 40.0%
AATTTGATCCACTTCCTCCT+GGG - chr2_4:216161-216180 Msa0307310:CDS 40.0%
CATGAACTGCATCTTCAGTT+TGG + chr2_4:216198-216217 None:intergenic 40.0%
CAAACTGAAGATGCAGTTCA+TGG - chr2_4:216196-216215 Msa0307310:CDS 40.0%
GGAAAGAAAAACGGGGAAAT+AGG + chr2_4:216237-216256 None:intergenic 40.0%
ACGGGAACTGGAAAGAAAAA+CGG + chr2_4:216246-216265 None:intergenic 40.0%
!! AGATAGATCTCGGTTTGCTA+TGG - chr2_4:216413-216432 Msa0307310:CDS 40.0%
!! GATAGATCTCGGTTTGCTAT+GGG - chr2_4:216414-216433 Msa0307310:CDS 40.0%
! TTCTAGAAATAACCTACCCC+AGG + chr2_4:216440-216459 None:intergenic 40.0%
!! GGGGTAGGTTATTTCTAGAA+TGG - chr2_4:216440-216459 Msa0307310:intron 40.0%
TGAACATGATGCAGGTTAGA+TGG + chr2_4:216480-216499 None:intergenic 40.0%
ATAGCACATGAACATGATGC+AGG + chr2_4:216488-216507 None:intergenic 40.0%
CATGTTCATGTGCTATGCAT+TGG - chr2_4:216492-216511 Msa0307310:intron 40.0%
!!! GAGCTTTTAGTTTTAGTGCC+AGG - chr2_4:216725-216744 Msa0307310:intron 40.0%
ACTATTAGTGTATCGTGGGA+TGG + chr2_4:216955-216974 None:intergenic 40.0%
!! GTCCATATTTTGAGGGTTTG+TGG - chr2_4:217070-217089 Msa0307310:intron 40.0%
AGCCACAAACCCTCAAAATA+TGG + chr2_4:217075-217094 None:intergenic 40.0%
GAAGTCCTTACCTTACAAGA+CGG + chr2_4:217315-217334 None:intergenic 40.0%
GACTAGAGTTACGACATATG+TGG + chr2_4:217342-217361 None:intergenic 40.0%
TATGTCGTAACTCTAGTCGA+TGG - chr2_4:217344-217363 Msa0307310:intron 40.0%
ATGTCGTAACTCTAGTCGAT+GGG - chr2_4:217345-217364 Msa0307310:intron 40.0%
! CAACCCAAAAAGCTAGCTTA+AGG - chr2_4:217407-217426 Msa0307310:intron 40.0%
! ACCCAAAAAGCTAGCTTAAG+GGG - chr2_4:217409-217428 Msa0307310:intron 40.0%
GGGTCTTAACTTAAGGTTCA+CGG - chr2_4:217488-217507 Msa0307310:intron 40.0%
! CTTTTCACTGTGGAGATTTC+TGG + chr2_4:217788-217807 None:intergenic 40.0%
AAAAGAGAGTGAGAAAGCAG+GGG + chr2_4:218200-218219 None:intergenic 40.0%
GTAAAAGAGAGTGAGAAAGC+AGG + chr2_4:218202-218221 None:intergenic 40.0%
TGGTTCCCAAGATACTCATA+TGG - chr2_4:218262-218281 Msa0307310:intron 40.0%
TCCCAAGATACTCATATGGA+AGG - chr2_4:218266-218285 Msa0307310:intron 40.0%
CTCCTTCCATATGAGTATCT+TGG + chr2_4:218271-218290 None:intergenic 40.0%
! CATATGGAAGGAGTTGACTT+TGG - chr2_4:218278-218297 Msa0307310:intron 40.0%
GTTGCATGATGTTCATGTTC+AGG - chr2_4:218304-218323 Msa0307310:intron 40.0%
GATTTGTACGAAGACTCTAC+TGG - chr2_4:218419-218438 Msa0307310:intron 40.0%
GGAAGTCTGAATGTTTGACT+GGG + chr2_4:218556-218575 None:intergenic 40.0%
CCTTTGCACATTCTTTGGAT+TGG + chr2_4:218600-218619 None:intergenic 40.0%
CCAATCCAAAGAATGTGCAA+AGG - chr2_4:218597-218616 Msa0307310:CDS 40.0%
ACACTCCTTTGCACATTCTT+TGG + chr2_4:218605-218624 None:intergenic 40.0%
! TCAATCCAAAGAAAGCGCAA+AGG - chr2_4:218660-218679 Msa0307310:CDS 40.0%
AACTCAATCCACAATTCTCG+AGG - chr2_4:218710-218729 Msa0307310:CDS 40.0%
TCTGTGGATACTGAAGAAAG+AGG - chr2_4:218734-218753 Msa0307310:CDS 40.0%
CTGTGGATACTGAAGAAAGA+GGG - chr2_4:218735-218754 Msa0307310:CDS 40.0%
AAGAAAGAGGGCTATCTTCT+AGG - chr2_4:218747-218766 Msa0307310:CDS 40.0%
!! GCTATCTTCTAGGATGACTA+AGG - chr2_4:218757-218776 Msa0307310:CDS 40.0%
ATTGTTTAAAGGGGACAGGA+AGG - chr2_4:218879-218898 Msa0307310:CDS 40.0%
AAAAAGCAATATCGCGATGC+AGG - chr2_4:218904-218923 Msa0307310:CDS 40.0%
! GCACACATGATGTTTTGCTT+TGG - chr2_4:219045-219064 Msa0307310:CDS 40.0%
TAGAACCAAGGAAAACTCAG+AGG - chr2_4:219146-219165 Msa0307310:intron 40.0%
! CAAAACTTCTAAGAGGACGT+GGG + chr2_4:219210-219229 None:intergenic 40.0%
! TAAAAAGGTATGCCCTAGCA+GGG - chr2_4:219503-219522 Msa0307310:intron 40.0%
GAACTAAACTAAACCCTGCT+AGG + chr2_4:219519-219538 None:intergenic 40.0%
AAGGCAAAATCACAAGGTGT+GGG + chr2_4:219545-219564 None:intergenic 40.0%
GGTTTGAAGGCAAAATCACA+AGG + chr2_4:219551-219570 None:intergenic 40.0%
! GTGATTTTGCCTTCAAACCT+CGG - chr2_4:219552-219571 Msa0307310:intron 40.0%
ATTCAGTTGTAGTCAAACCG+AGG + chr2_4:219572-219591 None:intergenic 40.0%
!!! CTGTTTTTTCCAGCTAACCA+AGG + chr2_4:219670-219689 None:intergenic 40.0%
!! TGTGAGGTTGGTGTGTATTT+GGG + chr2_4:219756-219775 None:intergenic 40.0%
CTTTGATGTTGCACTAAACG+TGG - chr2_4:220102-220121 Msa0307310:five_prime_UTR 40.0%
CAAGGAGCTTGTGATTAAGG+CGG + chr2_4:214463-214482 None:intergenic 45.0%
AGGGTAGATTGTTGCAATGG+TGG - chr2_4:214807-214826 Msa0307310:CDS 45.0%
GAGATAAGGGTTTGCACTGA+AGG - chr2_4:215038-215057 Msa0307310:intron 45.0%
AAAACGCCTGCACAGCTTAA+GGG - chr2_4:215443-215462 Msa0307310:intron 45.0%
TCGTGTGGAAGCAGTAAACA+TGG - chr2_4:215761-215780 Msa0307310:CDS 45.0%
CCTAAAGAGGTTGAGAGCAA+CGG - chr2_4:215803-215822 Msa0307310:intron 45.0%
!! TCATATGGATCTTGGCCTTG+AGG + chr2_4:215959-215978 None:intergenic 45.0%
AGGCCAAGATCCATATGAGA+TGG - chr2_4:215961-215980 Msa0307310:CDS 45.0%
GCTCCATCTCATATGGATCT+TGG + chr2_4:215967-215986 None:intergenic 45.0%
CTAGAAGGCTCCATCTCATA+TGG + chr2_4:215974-215993 None:intergenic 45.0%
CTTCCACCCTTAAATCCGAA+AGG - chr2_4:216007-216026 Msa0307310:CDS 45.0%
! TCCGAAAGGTGCAATCAACA+TGG - chr2_4:216021-216040 Msa0307310:CDS 45.0%
! CCCATGTTGATTGCACCTTT+CGG + chr2_4:216025-216044 None:intergenic 45.0%
! CCGAAAGGTGCAATCAACAT+GGG - chr2_4:216022-216041 Msa0307310:CDS 45.0%
GAATTTGATCCACTTCCTCC+TGG - chr2_4:216160-216179 Msa0307310:CDS 45.0%
ATTTGATCCACTTCCTCCTG+GGG - chr2_4:216162-216181 Msa0307310:CDS 45.0%
CTGAAGATGCAGTTCATGGT+AGG - chr2_4:216200-216219 Msa0307310:CDS 45.0%
GGGAACTGGAAAGAAAAACG+GGG + chr2_4:216244-216263 None:intergenic 45.0%
CGGGAACTGGAAAGAAAAAC+GGG + chr2_4:216245-216264 None:intergenic 45.0%
!!! GCCCCTTAAGCTAGCTTTTT+GGG + chr2_4:217413-217432 None:intergenic 45.0%
CGATGTGGGGTCTTAACTTA+AGG - chr2_4:217481-217500 Msa0307310:intron 45.0%
TAACTTAAGGTTCACGGCAC+AGG - chr2_4:217494-217513 Msa0307310:intron 45.0%
AACTTAAGGTTCACGGCACA+GGG - chr2_4:217495-217514 Msa0307310:intron 45.0%
TTCATCGTAGCTAAGGTGCA+AGG - chr2_4:217611-217630 Msa0307310:intron 45.0%
GCAGGATCAGCAATATGGTA+TGG + chr2_4:217752-217771 None:intergenic 45.0%
GAAGAGCAGGATCAGCAATA+TGG + chr2_4:217757-217776 None:intergenic 45.0%
TCTGGAGAATTCAGAAGAGC+AGG + chr2_4:217770-217789 None:intergenic 45.0%
CTACTTACAGAGCTAAGACC+AGG + chr2_4:217815-217834 None:intergenic 45.0%
ACGATATCGATCCCATTCCA+TGG + chr2_4:217888-217907 None:intergenic 45.0%
!! AGTAATGCCAGTCGTTTTCC+TGG - chr2_4:218380-218399 Msa0307310:intron 45.0%
AGTCTGAATGTTTGACTGGG+AGG + chr2_4:218553-218572 None:intergenic 45.0%
GGGAAGTCTGAATGTTTGAC+TGG + chr2_4:218557-218576 None:intergenic 45.0%
TCACTCCTTTGCGCTTTCTT+TGG + chr2_4:218668-218687 None:intergenic 45.0%
AAACATCATGTGTGCATGCG+TGG + chr2_4:219040-219059 None:intergenic 45.0%
!! CTTGGTTCTATCTCAGCAAC+AGG + chr2_4:219136-219155 None:intergenic 45.0%
CTGTTGCTGAGATAGAACCA+AGG - chr2_4:219134-219153 Msa0307310:intron 45.0%
! CCAAAACTTCTAAGAGGACG+TGG + chr2_4:219211-219230 None:intergenic 45.0%
! CCACGTCCTCTTAGAAGTTT+TGG - chr2_4:219208-219227 Msa0307310:CDS 45.0%
! AAGGTGCTTCTAGTGGGATT+CGG + chr2_4:219481-219500 None:intergenic 45.0%
! GTAAAAAGGTATGCCCTAGC+AGG - chr2_4:219502-219521 Msa0307310:intron 45.0%
CAAAATCACAAGGTGTGGGA+TGG + chr2_4:219541-219560 None:intergenic 45.0%
GAAGGCAAAATCACAAGGTG+TGG + chr2_4:219546-219565 None:intergenic 45.0%
GTAGTCAAACCGAGGTTTGA+AGG + chr2_4:219564-219583 None:intergenic 45.0%
!! CTGTGAGGTTGGTGTGTATT+TGG + chr2_4:219757-219776 None:intergenic 45.0%
TCATCCTCGCTAAAGCTAGA+CGG + chr2_4:219867-219886 None:intergenic 45.0%
CAATCAATCCAGTGAGGAAC+TGG + chr2_4:219901-219920 None:intergenic 45.0%
!!! TTTTTTTTGTTATAATTATT+TGG - chr2_4:215112-215131 Msa0307310:intron 5.0%
!!! AATTTTTTAATATTTGTATT+TGG - chr2_4:216813-216832 Msa0307310:intron 5.0%
CAAAACGCCTGCACAGCTTA+AGG - chr2_4:215442-215461 Msa0307310:intron 50.0%
TCCAATCCCTTAAGCTGTGC+AGG + chr2_4:215452-215471 None:intergenic 50.0%
!!! CTGGATGGTTTTGTCACCGA+AGG - chr2_4:215636-215655 Msa0307310:intron 50.0%
GGACGACAAGATCGTTCAAG+CGG - chr2_4:215701-215720 Msa0307310:intron 50.0%
CCGTTGCTCTCAACCTCTTT+AGG + chr2_4:215806-215825 None:intergenic 50.0%
GCACCTTTCGGATTTAAGGG+TGG + chr2_4:216013-216032 None:intergenic 50.0%
CAGGAAGATGGTCCACTACT+TGG - chr2_4:216133-216152 Msa0307310:CDS 50.0%
GTTTGGCATTCAAATGCCCC+AGG + chr2_4:216181-216200 None:intergenic 50.0%
GAGCGTGAAGTCTGCAGTAA+TGG - chr2_4:217201-217220 Msa0307310:intron 50.0%
!!! CGCCCCTTAAGCTAGCTTTT+TGG + chr2_4:217414-217433 None:intergenic 50.0%
ACCATATGCCCACTCGATGT+GGG - chr2_4:217467-217486 Msa0307310:intron 50.0%
GTTAAGACCCCACATCGAGT+GGG + chr2_4:217478-217497 None:intergenic 50.0%
AGTTAAGACCCCACATCGAG+TGG + chr2_4:217479-217498 None:intergenic 50.0%
TCCACAGTGAAAAGTCGACC+TGG - chr2_4:217794-217813 Msa0307310:intron 50.0%
!! ACCAGGTCGACTTTTCACTG+TGG + chr2_4:217798-217817 None:intergenic 50.0%
TCTAAGGAAGAGTTCCTGCC+AGG + chr2_4:218401-218420 None:intergenic 50.0%
CCACAGAACCTCGAGAATTG+TGG + chr2_4:218721-218740 None:intergenic 50.0%
CCACAATTCTCGAGGTTCTG+TGG - chr2_4:218718-218737 Msa0307310:CDS 50.0%
AAGCAATATCGCGATGCAGG+TGG - chr2_4:218907-218926 Msa0307310:CDS 50.0%
ATCATGTGTGCATGCGTGGA+AGG + chr2_4:219036-219055 None:intergenic 50.0%
! GCTCACCTCTGAGTTTTCCT+TGG + chr2_4:219154-219173 None:intergenic 50.0%
! TTCTAAGAGGACGTGGGTGT+CGG + chr2_4:219204-219223 None:intergenic 50.0%
!! AGCGCAAAGTGCTGCTTAGT+TGG - chr2_4:219410-219429 Msa0307310:intron 50.0%
TGCTGATACCAGTTCCTCAC+TGG - chr2_4:219890-219909 Msa0307310:intron 50.0%
GCCTGCACAGCTTAAGGGAT+TGG - chr2_4:215448-215467 Msa0307310:intron 55.0%
!! TCGTTCAAGCGGTGTCATCC+AGG - chr2_4:215712-215731 Msa0307310:intron 55.0%
! AGGATCGTGGCAGTGGACTT+GGG - chr2_4:215732-215751 Msa0307310:intron 55.0%
GGACTTGGGCAAGATTCGTG+TGG - chr2_4:215746-215765 Msa0307310:CDS 55.0%
CAGATATGACGTACGGACGC+AGG - chr2_4:215852-215871 Msa0307310:intron 55.0%
TCAAATGCCCCAGGAGGAAG+TGG + chr2_4:216172-216191 None:intergenic 55.0%
TGGCATTCAAATGCCCCAGG+AGG + chr2_4:216178-216197 None:intergenic 55.0%
!! ATCTCGGTTTGCTATGGGCC+TGG - chr2_4:216419-216438 Msa0307310:CDS 55.0%
!! TCTCGGTTTGCTATGGGCCT+GGG - chr2_4:216420-216439 Msa0307310:CDS 55.0%
!! TAGGTTCTAGGCTGGACCTC+TGG - chr2_4:217179-217198 Msa0307310:intron 55.0%
GACCATATGCCCACTCGATG+TGG - chr2_4:217466-217485 Msa0307310:intron 55.0%
CCATATGCCCACTCGATGTG+GGG - chr2_4:217468-217487 Msa0307310:intron 55.0%
!! ATGCCAGTCGTTTTCCTGGC+AGG - chr2_4:218384-218403 Msa0307310:intron 55.0%
GTTCCTGCCAGGAAAACGAC+TGG + chr2_4:218390-218409 None:intergenic 55.0%
CATAGGAAGGGTTCCAAGCG+TGG - chr2_4:218470-218489 Msa0307310:intron 55.0%
! GGTTCCAAGCGTGGTGTTGA+GGG - chr2_4:218479-218498 Msa0307310:CDS 55.0%
CATACCCTCAACACCACGCT+TGG + chr2_4:218486-218505 None:intergenic 55.0%
ATGTGTGCATGCGTGGAAGG+AGG + chr2_4:219033-219052 None:intergenic 55.0%
TCTAAGAGGACGTGGGTGTC+GGG + chr2_4:219203-219222 None:intergenic 55.0%
CAAGGGACACCTTGGTTAGC+TGG - chr2_4:219658-219677 Msa0307310:intron 55.0%
!! GATGCCGTCTAGCTTTAGCG+AGG - chr2_4:219860-219879 Msa0307310:intron 55.0%
!! AGCGGTGTCATCCAGGATCG+TGG - chr2_4:215719-215738 Msa0307310:intron 60.0%
GTCATCCAGGATCGTGGCAG+TGG - chr2_4:215725-215744 Msa0307310:intron 60.0%
CAAGTCCACTGCCACGATCC+TGG + chr2_4:215733-215752 None:intergenic 60.0%
! CAGGATCGTGGCAGTGGACT+TGG - chr2_4:215731-215750 Msa0307310:intron 60.0%
!! CTCGGTTTGCTATGGGCCTG+GGG - chr2_4:216421-216440 Msa0307310:CDS 60.0%
!! GTTTGCTATGGGCCTGGGGT+AGG - chr2_4:216425-216444 Msa0307310:CDS 60.0%
CTGCAGACTTCACGCTCCAG+AGG + chr2_4:217198-217217 None:intergenic 60.0%
CCCCACATCGAGTGGGCATA+TGG + chr2_4:217471-217490 None:intergenic 60.0%
! GGGTTCCAAGCGTGGTGTTG+AGG - chr2_4:218478-218497 Msa0307310:CDS 60.0%
TATCGCGATGCAGGTGGAGC+AGG - chr2_4:218913-218932 Msa0307310:CDS 60.0%
ATCGCGATGCAGGTGGAGCA+GGG - chr2_4:218914-218933 Msa0307310:CDS 60.0%
TATGGCCGCAGTCGTACGCA+AGG - chr2_4:219640-219659 Msa0307310:intron 60.0%
ATGGCCGCAGTCGTACGCAA+GGG - chr2_4:219641-219660 Msa0307310:intron 60.0%
GTGTCCCTTGCGTACGACTG+CGG + chr2_4:219648-219667 None:intergenic 60.0%
GTCGTACGCAAGGGACACCT+TGG - chr2_4:219650-219669 Msa0307310:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 214380 220312 214380 ID=Msa0307310;Name=Msa0307310
chr2_4 mRNA 214380 220312 214380 ID=Msa0307310-mRNA-1;Parent=Msa0307310;Name=Msa0307310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=282|1|1|1|1|1|8|395|544
chr2_4 exon 214380 214844 214380 ID=Msa0307310-mRNA-1:exon:81;Parent=Msa0307310-mRNA-1
chr2_4 exon 215525 215613 215525 ID=Msa0307310-mRNA-1:exon:80;Parent=Msa0307310-mRNA-1
chr2_4 exon 215735 215818 215735 ID=Msa0307310-mRNA-1:exon:79;Parent=Msa0307310-mRNA-1
chr2_4 exon 215914 216456 215914 ID=Msa0307310-mRNA-1:exon:78;Parent=Msa0307310-mRNA-1
chr2_4 exon 216866 216945 216866 ID=Msa0307310-mRNA-1:exon:77;Parent=Msa0307310-mRNA-1
chr2_4 exon 218475 219128 218475 ID=Msa0307310-mRNA-1:exon:76;Parent=Msa0307310-mRNA-1
chr2_4 exon 219207 219314 219207 ID=Msa0307310-mRNA-1:exon:75;Parent=Msa0307310-mRNA-1
chr2_4 exon 220024 220312 220024 ID=Msa0307310-mRNA-1:exon:74;Parent=Msa0307310-mRNA-1
chr2_4 five_prime_UTR 220031 220312 220031 ID=Msa0307310-mRNA-1:five_prime_utr;Parent=Msa0307310-mRNA-1
chr2_4 CDS 220024 220030 220024 ID=Msa0307310-mRNA-1:cds;Parent=Msa0307310-mRNA-1
chr2_4 CDS 219207 219314 219207 ID=Msa0307310-mRNA-1:cds;Parent=Msa0307310-mRNA-1
chr2_4 CDS 218475 219128 218475 ID=Msa0307310-mRNA-1:cds;Parent=Msa0307310-mRNA-1
chr2_4 CDS 216866 216945 216866 ID=Msa0307310-mRNA-1:cds;Parent=Msa0307310-mRNA-1
chr2_4 CDS 215914 216456 215914 ID=Msa0307310-mRNA-1:cds;Parent=Msa0307310-mRNA-1
chr2_4 CDS 215735 215818 215735 ID=Msa0307310-mRNA-1:cds;Parent=Msa0307310-mRNA-1
chr2_4 CDS 215525 215613 215525 ID=Msa0307310-mRNA-1:cds;Parent=Msa0307310-mRNA-1
chr2_4 CDS 214775 214844 214775 ID=Msa0307310-mRNA-1:cds;Parent=Msa0307310-mRNA-1
chr2_4 three_prime_UTR 214380 214774 214380 ID=Msa0307310-mRNA-1:three_prime_utr;Parent=Msa0307310-mRNA-1
Gene Sequence

>Msa0307310

ATGGAAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGTCTCTGCGGAGAAGTTTCCGAAAAGAAAGCTCAAAACGCCTGCACAGCTTAAGGGATTGGAGAAATTTTATACGGAGCACAAATATCCAACAGAGGAATTGAAATTAGCAATTGCTGAGGAGTTAGAGTTGACAGAAAAGCAAGTTTCTGGATGGTTTTGTCACCGAAGGTTAAAGGATAAAAGATTGTTGAAAGAAGAAGCAAATGCTAATGGACGACAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCGTGTGGAAGCAGTAAACATGGTGATTATAAGTATCTGGATCCTAAAGAGGTTGAGAGCAACGGCCTCTACAATCGTGATTTGTCTGTTGCAGATATGACGTACGGACGCAGGAATCATTTTTCTGAAAATGTCAGTGGAATGGATGATGACACATCATCTGAGAGTAGCTCTTATTTGCAAGAACGTTTGTATCCTCAAGGCCAAGATCCATATGAGATGGAGCCTTCTAGATATAGTAAAGCTCTTCCACCCTTAAATCCGAAAGGTGCAATCAACATGGGATATAAGCCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGAATTATCAGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCTGGGGCATTTGAATGCCAAACTGAAGATGCAGTTCATGAACCATACCATATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATCTCCACAGTGAAAAGTCGACCTGGTCTTAGCTCTAGATATGATTCATATTATACTAAACATGGTTCCCAAGATACTCATATGGAAGGAGTTGACTTTGGTTCGTTGCATGATGTTCATGTTCAGGATAAACAAGATAAGAAAGCTTTCCATGGTACCAAACATAGACAAACTTTTCAGAGTAATGCCAGTCGTTTTCCTGGCAGGAACTCTTCCTTAGATTTGTACGAAGACTCTACTGGAGAAGCTGCTTACAACATTGCTAAGAATCATAGGAAGGGTTCCAAGCGTGGTGTTGAGGGTATGAGATCTGATTCTACTTCTAACCATAGTGATCGCTATGAAGAAAACCTCCCAGTCAAACATTCAGACTTCCCACAGTATAACTATGAAAACACCAATCCAAAGAATGTGCAAAGGAGTGTTCATGCAGACATTCTTCAATATGACTATGATAATGTCAATCCAAAGAAAGCGCAAAGGAGTGAACACATGAAATCTAAACCTTCAAACTCAATCCACAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGGCTATCTTCTAGGATGACTAAGGATGAATTGTTTAAAGGGGACAGGAAGGCAAAAAAGCAATATCGCGATGCAGGTGGAGCAGGGATGCTTTCAAATGAGACTATGGTTGCAAAACGACTTAAAGCAAATACGTTTCAACCATACAATATGAAACAGGTTCCTGTTGCTGAGATAGAACCAAGGAAAACTCAGAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCTGATACCAGTTCCTCACTGGATTGA

Protein sequence

>Msa0307310

MEESSELQPEENKVSAEKFPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESNGLYNRDLSVADMTYGRRNHFSENVSGMDDDTSSESSSYLQERLYPQGQDPYEMEPSRYSKALPPLNPKGAINMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYQEDGPLLGVEFDPLPPGAFECQTEDAVHEPYHIADPALLNSPEISTVKSRPGLSSRYDSYYTKHGSQDTHMEGVDFGSLHDVHVQDKQDKKAFHGTKHRQTFQSNASRFPGRNSSLDLYEDSTGEAAYNIAKNHRKGSKRGVEGMRSDSTSNHSDRYEENLPVKHSDFPQYNYENTNPKNVQRSVHADILQYDYDNVNPKKAQRSEHMKSKPSNSIHNSRGSVDTEERGLSSRMTKDELFKGDRKAKKQYRDAGGAGMLSNETMVAKRLKANTFQPYNMKQVPVAEIEPRKTQRSAAEMPSSFSEDETADTSSSLD*