AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0065680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065680 MtrunA17_Chr1g0169431 98.770 244 3 0 1 244 1 244 0.0 498
Msa0065680 MtrunA17_Chr5g0395391 71.489 235 52 3 1 235 12 231 9.78e-105 306
Msa0065680 MtrunA17_Chr5g0395391 76.147 109 26 0 136 244 234 342 1.01e-56 184
Msa0065680 MtrunA17_Chr8g0340401 47.340 188 84 7 63 241 114 295 3.01e-39 139
Msa0065680 MtrunA17_Chr8g0372291 72.000 75 21 0 170 244 216 290 4.03e-36 129
Msa0065680 MtrunA17_Chr2g0326771 46.584 161 54 4 99 236 129 280 1.67e-35 128
Msa0065680 MtrunA17_Chr1g0146231 43.810 210 71 7 63 241 110 303 4.66e-35 127
Msa0065680 MtrunA17_Chr3g0140331 44.554 202 69 8 63 241 141 322 6.76e-35 127
Msa0065680 MtrunA17_Chr3g0145121 36.260 262 122 9 6 241 42 284 8.94e-35 126
Msa0065680 MtrunA17_Chr4g0035891 50.000 140 44 5 124 239 141 278 2.17e-33 122
Msa0065680 MtrunA17_Chr5g0404981 71.233 73 21 0 172 244 300 372 2.53e-33 124
Msa0065680 MtrunA17_Chr6g0461591 76.471 68 16 0 171 238 191 258 5.42e-33 120
Msa0065680 MtrunA17_Chr7g0253101 74.648 71 18 0 166 236 182 252 6.59e-33 120
Msa0065680 MtrunA17_Chr1g0199671 70.130 77 21 1 160 236 232 306 2.18e-32 120
Msa0065680 MtrunA17_Chr4g0028961 74.627 67 17 0 172 238 232 298 3.01e-32 120
Msa0065680 MtrunA17_Chr1g0213161 71.642 67 19 0 170 236 150 216 1.36e-31 116
Msa0065680 MtrunA17_Chr7g0232671 55.224 67 28 1 172 238 187 251 3.82e-19 83.6
Msa0065680 MtrunA17_Chr7g0232701 47.126 87 44 2 149 233 48 134 4.18e-18 78.2
Msa0065680 MtrunA17_Chr7g0232681 46.739 92 45 3 149 238 107 196 1.90e-17 77.8
Msa0065680 MtrunA17_Chr7g0271861 54.762 42 19 0 166 207 16 57 9.49e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065680 AT3G24050.1 80.000 75 15 0 170 244 192 266 2.47e-40 140
Msa0065680 AT4G32890.1 39.636 275 98 11 7 241 20 266 6.46e-38 135
Msa0065680 AT4G36240.1 38.340 253 104 6 6 239 12 231 6.98e-36 127
Msa0065680 AT4G34680.1 46.479 142 63 3 111 242 112 250 4.91e-35 126
Msa0065680 AT4G34680.2 46.479 142 63 3 111 242 112 250 4.91e-35 126
Msa0065680 AT5G66320.2 79.412 68 14 0 172 239 249 316 8.80e-35 127
Msa0065680 AT5G66320.1 79.412 68 14 0 172 239 249 316 8.80e-35 127
Msa0065680 AT5G25830.1 77.143 70 16 0 172 241 219 288 1.23e-33 124
Msa0065680 AT3G51080.1 72.603 73 20 0 172 244 221 293 2.74e-33 122
Msa0065680 AT3G60530.1 75.362 69 17 0 171 239 157 225 2.88e-33 120
Msa0065680 AT1G08010.2 72.464 69 19 0 170 238 218 286 2.82e-32 120
Msa0065680 AT1G08010.1 72.464 69 19 0 170 238 218 286 2.82e-32 120
Msa0065680 AT1G08010.3 72.464 69 19 0 170 238 218 286 2.82e-32 120
Msa0065680 AT2G45050.1 75.000 68 17 0 172 239 179 246 3.84e-32 118
Msa0065680 AT1G08000.2 64.634 82 29 0 157 238 203 284 7.00e-32 119
Msa0065680 AT1G08000.1 64.634 82 29 0 157 238 203 284 7.00e-32 119
Msa0065680 AT3G54810.1 75.000 68 17 0 172 239 229 296 6.57e-31 117
Msa0065680 AT3G54810.2 75.000 68 17 0 172 239 229 296 6.57e-31 117
Msa0065680 AT3G45170.1 60.294 68 27 0 172 239 115 182 2.38e-27 104
Msa0065680 AT2G28340.1 66.667 63 21 0 174 236 193 255 9.81e-26 102

Find 105 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACAAGCAAAATGATTTA+AGG 0.141755 1_2:+28294735 None:intergenic
CACTTTCTCTTTGGAAGTTT+TGG 0.158917 1_2:+28295188 None:intergenic
TCAGTCTCTCAATTCTCTTT+TGG 0.188396 1_2:-28297446 Msa0065680:five_prime_UTR
CATGCCAAAAGTTAGGATTT+TGG 0.206218 1_2:-28294870 Msa0065680:three_prime_UTR
TGCTTATCTGAACTAATTCT+AGG 0.234887 1_2:-28294596 Msa0065680:three_prime_UTR
CTTGTGCTGTTCTCGAGCTT+TGG 0.240759 1_2:+28295369 None:intergenic
ATGTACTTTGATTGAGGATT+AGG 0.241750 1_2:-28294659 Msa0065680:three_prime_UTR
TTGTGCTGTTCTCGAGCTTT+GGG 0.269770 1_2:+28295370 None:intergenic
GGTTTGTTTCACTTTCTCTT+TGG 0.274207 1_2:+28295179 None:intergenic
AGTGAAGGAAAGGCTTTCTT+AGG 0.280723 1_2:+28296073 None:intergenic
GTCCAACAAAGATGCATTTC+CGG 0.285678 1_2:-28295457 Msa0065680:CDS
GACATTTCCTCCCAATGGTT+GGG 0.293078 1_2:+28295157 None:intergenic
CTATTTGCAGGACGGTATTC+AGG 0.302785 1_2:+28295030 None:intergenic
CGAAAAGTTGGGCTATTTGC+AGG 0.311001 1_2:+28295018 None:intergenic
CATGCATTACAAAGTGTCTT+TGG 0.315428 1_2:+28295084 None:intergenic
CATTTAGCATGCCAAAAGTT+AGG 0.327033 1_2:-28294877 Msa0065680:three_prime_UTR
AAAACCAAAATCCTAACTTT+TGG 0.331501 1_2:+28294866 None:intergenic
CAAAGTGTCTTTGGACCATT+TGG 0.337970 1_2:+28295093 None:intergenic
TGTACTTTGATTGAGGATTA+GGG 0.355942 1_2:-28294658 Msa0065680:three_prime_UTR
GAAGGTGGATCACTGCATTC+TGG 0.356189 1_2:+28296046 None:intergenic
GTTGTTTCCACGGGAATTGT+AGG 0.366200 1_2:+28295217 None:intergenic
CTCTCTTGCCTGCTACTAGC+TGG 0.381715 1_2:-28297397 Msa0065680:five_prime_UTR
TGGTTCTGTGGACGACCTCT+TGG 0.388206 1_2:-28296137 Msa0065680:CDS
GATGAGGAAGCAGAAGGGAA+TGG 0.399465 1_2:-28294956 Msa0065680:CDS
TTTGTAATGCATGTGGGGTT+AGG 0.415099 1_2:-28295074 Msa0065680:CDS
ACTTACAGAAAGTGAATTGA+TGG 0.418526 1_2:+28295997 None:intergenic
CCACGGGAATTGTAGGTTTG+AGG 0.425374 1_2:+28295224 None:intergenic
AAGCAGAAGGGAATGGGAAC+GGG 0.428545 1_2:-28294949 Msa0065680:CDS
TGTGATTGTAGCCACTTAAG+AGG 0.429240 1_2:+28295310 None:intergenic
AGCCGGAAATGCATCTTTGT+TGG 0.438765 1_2:+28295455 None:intergenic
TGCATGTCACTGCGAAAAGT+TGG 0.440834 1_2:+28295006 None:intergenic
ACATTTCCTCCCAATGGTTG+GGG 0.449081 1_2:+28295158 None:intergenic
ATTTGATGCTTCAAAAGATC+CGG 0.450692 1_2:+28295399 None:intergenic
TGAGTTGTCCTGTATTCAAC+CGG 0.452850 1_2:-28295418 Msa0065680:CDS
CAAAAGATCCGGTTGAATAC+AGG 0.453486 1_2:+28295410 None:intergenic
GACTTGCTCCGTGCACGGAC+AGG 0.458205 1_2:+28295279 None:intergenic
TTCGCTCAATCCATTGGCCC+TGG 0.469600 1_2:-28296026 Msa0065680:CDS
GACAAGAGCCAGCTAGTAGC+AGG 0.476760 1_2:+28297389 None:intergenic
CCAGGAGGAGGTTGCAGAAG+AGG 0.477241 1_2:-28295493 Msa0065680:intron
GTGGAGATGAGGAAGCAGAA+GGG 0.478182 1_2:-28294961 Msa0065680:CDS
TTGCAGAAGAGGAGCTTGAA+TGG 0.482772 1_2:-28295482 Msa0065680:CDS
GTCATTGATAAAATGAAAAG+TGG 0.484461 1_2:-28294920 Msa0065680:three_prime_UTR
ATGAGGAAGCAGAAGGGAAT+GGG 0.486460 1_2:-28294955 Msa0065680:CDS
GTGAAACAAACCCCAACCAT+TGG 0.493226 1_2:-28295168 Msa0065680:CDS
TTGGTACTCGGTTGTTTCCA+CGG 0.494137 1_2:+28295207 None:intergenic
AACAGCATTACCCTCTTAAG+TGG 0.500575 1_2:-28295321 Msa0065680:CDS
GCATGTCACTGCGAAAAGTT+GGG 0.502991 1_2:+28295007 None:intergenic
TGGTACTCGGTTGTTTCCAC+GGG 0.505676 1_2:+28295208 None:intergenic
CAATGGCGTGCAGGTCCAAA+TGG 0.508669 1_2:-28295108 Msa0065680:CDS
TTGGATTTCTCATCTGACAT+AGG 0.508816 1_2:-28296118 Msa0065680:CDS
AGTGGAGATGAGGAAGCAGA+AGG 0.514467 1_2:-28294962 Msa0065680:CDS
TTCTGGTTTGAGTGAAGGAA+AGG 0.515866 1_2:+28296063 None:intergenic
TGACATTTCCTCCCAATGGT+TGG 0.516568 1_2:+28295156 None:intergenic
TGTGGGGTTAGGTATAAGTC+TGG 0.520333 1_2:-28295063 Msa0065680:CDS
GGTAACATGTACTTTGATTG+AGG 0.520464 1_2:-28294665 Msa0065680:three_prime_UTR
TCCACCTTCGCTCAATCCAT+TGG 0.521499 1_2:-28296032 Msa0065680:CDS
GATGGAGGCCCTTGGTTCTG+TGG 0.522422 1_2:-28296149 Msa0065680:CDS
TGAAACAAACCCCAACCATT+GGG 0.524385 1_2:-28295167 Msa0065680:CDS
GTTCAGATAAGCATAATGAA+TGG 0.527844 1_2:+28294606 None:intergenic
AATTCTAGGTTGATGAATAG+TGG 0.527863 1_2:-28294582 Msa0065680:three_prime_UTR
GTGAATTGATGGGATCATCC+AGG 0.528433 1_2:+28296008 None:intergenic
ATGGGATCATCCAGGGCCAA+TGG 0.530010 1_2:+28296016 None:intergenic
CTGCATTCTGGTTTGAGTGA+AGG 0.532294 1_2:+28296058 None:intergenic
TCATCTCCACTACTTTCCTG+TGG 0.533667 1_2:+28294974 None:intergenic
TCTCGTAGCAAGCCTCGCCT+TGG 0.534627 1_2:-28295258 Msa0065680:CDS
AGTACACAAACGTGAAAAGC+TGG 0.538176 1_2:-28297358 Msa0065680:intron
GATACTCCACAATGGCGTGC+AGG 0.539263 1_2:-28295117 Msa0065680:CDS
TCAACAAACGTTTCAACAGC+CGG 0.539345 1_2:+28295438 None:intergenic
TTGAGGCATCAGCAAGGCCA+AGG 0.541565 1_2:+28295241 None:intergenic
GAAGCAGAAGGGAATGGGAA+CGG 0.544276 1_2:-28294950 Msa0065680:CDS
GCCAATGGATTGAGCGAAGG+TGG 0.546210 1_2:+28296031 None:intergenic
ACTTAAGAGGGTAATGCTGT+TGG 0.550014 1_2:+28295323 None:intergenic
AAGAGAATTGAGAGACTGAA+AGG 0.557136 1_2:+28297450 None:intergenic
CATCTCCACTACTTTCCTGT+GGG 0.557649 1_2:+28294975 None:intergenic
GGAACCAACGAGAGATGGTA+AGG 0.566590 1_2:+28297471 None:intergenic
TGAAGTTCCCTGTCCGTGCA+CGG 0.571256 1_2:-28295287 Msa0065680:CDS
TTTGGACCTGCACGCCATTG+TGG 0.572595 1_2:+28295111 None:intergenic
ACTTGCTCCGTGCACGGACA+GGG 0.574860 1_2:+28295280 None:intergenic
TACGAGACTTGCTCCGTGCA+CGG 0.578328 1_2:+28295274 None:intergenic
ATGATGACATTTCCTCCCAA+TGG 0.580868 1_2:+28295152 None:intergenic
ACAGGAAAGTAGTGGAGATG+AGG 0.582547 1_2:-28294972 Msa0065680:CDS
TGAAAGGAACCAACGAGAGA+TGG 0.585204 1_2:+28297466 None:intergenic
TGTGCTGTTCTCGAGCTTTG+GGG 0.589584 1_2:+28295371 None:intergenic
TGAATTGATGGGATCATCCA+GGG 0.600445 1_2:+28296009 None:intergenic
GCATCAGCAAGGCCAAGGCG+AGG 0.601336 1_2:+28295246 None:intergenic
GACACTTTGTAATGCATGTG+GGG 0.601729 1_2:-28295079 Msa0065680:CDS
AAGACACTTTGTAATGCATG+TGG 0.602236 1_2:-28295081 Msa0065680:CDS
TAATTCCCACAGGAAAGTAG+TGG 0.604924 1_2:-28294980 Msa0065680:CDS
GAGGTCGTCCACAGAACCAA+GGG 0.608143 1_2:+28296141 None:intergenic
AGACACTTTGTAATGCATGT+GGG 0.608576 1_2:-28295080 Msa0065680:CDS
CTTACAGAAAGTGAATTGAT+GGG 0.611737 1_2:+28295998 None:intergenic
GTGATTGTAGCCACTTAAGA+GGG 0.622729 1_2:+28295311 None:intergenic
CGTGCCTTACCATCTCTCGT+TGG 0.626554 1_2:-28297475 None:intergenic
ACATGCATTCTAATTCCCAC+AGG 0.630282 1_2:-28294990 Msa0065680:CDS
AACAAACCCCAACCATTGGG+AGG 0.635541 1_2:-28295164 Msa0065680:CDS
AGGGCCAATGGATTGAGCGA+AGG 0.639769 1_2:+28296028 None:intergenic
AGAGGTCGTCCACAGAACCA+AGG 0.642044 1_2:+28296140 None:intergenic
GGGAGGAAATGTCATCATTG+TGG 0.646984 1_2:-28295147 Msa0065680:CDS
CCTCAAACCTACAATTCCCG+TGG 0.649034 1_2:-28295224 Msa0065680:CDS
GACGGTATTCAGGTACAAGT+CGG 0.649278 1_2:+28295040 None:intergenic
AAGTTGGGCTATTTGCAGGA+CGG 0.658089 1_2:+28295022 None:intergenic
TTTCTCATCTGACATAGGTG+AGG 0.665571 1_2:-28296113 Msa0065680:CDS
GTAGGTTTGAGGCATCAGCA+AGG 0.716777 1_2:+28295235 None:intergenic
TGTCAGATGAGAAATCCAAG+AGG 0.747403 1_2:+28296122 None:intergenic
GAGTTGATGATACTCCACAA+TGG 0.801331 1_2:-28295125 Msa0065680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATATTTGTTTGTA+CGG - chr1_2:28295811-28295830 Msa0065680:intron 10.0%
!!! TTTTATTATTATTTGTGAAG+TGG - chr1_2:28294842-28294861 Msa0065680:three_prime_UTR 15.0%
!! TTTATTATTATTTGTGAAGT+GGG - chr1_2:28294843-28294862 Msa0065680:three_prime_UTR 15.0%
!!! TTTGTTTAAGGTTTAATTTA+AGG - chr1_2:28294946-28294965 Msa0065680:CDS 15.0%
!!! TTTTCTAATCATTTTCATAT+TGG - chr1_2:28295032-28295051 Msa0065680:CDS 15.0%
!! AAAAAACATAGCAAAGATTA+AGG + chr1_2:28294722-28294741 None:intergenic 20.0%
!! ATTTGAATATGCTGAAAATT+TGG - chr1_2:28294818-28294837 Msa0065680:three_prime_UTR 20.0%
!! TATTGAAGGAATAATGAAAT+GGG - chr1_2:28294874-28294893 Msa0065680:three_prime_UTR 20.0%
!! AACAAAGAAAAACAAGAAAA+TGG + chr1_2:28294932-28294951 None:intergenic 20.0%
!!! TTCTTGTTTTTCTTTGTTTA+AGG - chr1_2:28294934-28294953 Msa0065680:exon 20.0%
!!! TGCTTATTTTTATGTTATGT+TGG - chr1_2:28294977-28294996 Msa0065680:CDS 20.0%
!! AAAGATTAAAGAACTTCATT+TGG + chr1_2:28295179-28295198 None:intergenic 20.0%
!!! GTTGTTTTTATAAGCTATAT+TGG - chr1_2:28295336-28295355 Msa0065680:CDS 20.0%
!! AAAAGTAACTCAAGTAATAA+AGG + chr1_2:28295540-28295559 None:intergenic 20.0%
!!! CTTTTTATTGTGTTTATGAA+TGG - chr1_2:28295581-28295600 Msa0065680:intron 20.0%
!! TTTCATGTATTGTAATCATA+AGG - chr1_2:28295696-28295715 Msa0065680:intron 20.0%
!! TTAAAAAATAGTGAAAAGCA+TGG + chr1_2:28295799-28295818 None:intergenic 20.0%
!! ACAGATAAAAATAACAGAAT+AGG + chr1_2:28295842-28295861 None:intergenic 20.0%
!!! AAAAAATCAAGCAAGTATTT+TGG + chr1_2:28296075-28296094 None:intergenic 20.0%
!!! TAGATTAAAATTTTGCAGTT+AGG - chr1_2:28297264-28297283 Msa0065680:intron 20.0%
!!! AGATTAAAATTTTGCAGTTA+GGG - chr1_2:28297265-28297284 Msa0065680:intron 20.0%
! AAAAACAAGCAAGAAAAAGA+GGG + chr1_2:28294765-28294784 None:intergenic 25.0%
! TAAAAACAAGCAAGAAAAAG+AGG + chr1_2:28294766-28294785 None:intergenic 25.0%
! GTATTGAAGGAATAATGAAA+TGG - chr1_2:28294873-28294892 Msa0065680:three_prime_UTR 25.0%
! AAAGAACAGAAACAATGAAT+TGG + chr1_2:28295148-28295167 None:intergenic 25.0%
! TGTAAAATCGTATACTTTAC+TGG - chr1_2:28295474-28295493 Msa0065680:CDS 25.0%
!!! ATACTTTACTGGTTTTTGTA+TGG - chr1_2:28295485-28295504 Msa0065680:CDS 25.0%
! TAATGTAAAGAACTTATTCC+AGG + chr1_2:28295619-28295638 None:intergenic 25.0%
! TGAAAATTTCATAGTAGGTT+TGG + chr1_2:28295728-28295747 None:intergenic 25.0%
!! AAACCTACTATGAAATTTTC+AGG - chr1_2:28295727-28295746 Msa0065680:intron 25.0%
! AATCCTGAAAATTTCATAGT+AGG + chr1_2:28295733-28295752 None:intergenic 25.0%
!!! TGTATATTTGTTTTCAGAGA+TGG - chr1_2:28295859-28295878 Msa0065680:intron 25.0%
!!! AAGTATTTTGGAAAGGTTAA+TGG + chr1_2:28296063-28296082 None:intergenic 25.0%
! AAGGAAAACAAGTAAAAATC+TGG + chr1_2:28296229-28296248 None:intergenic 25.0%
! AACTCATAAGTATGGAAAAA+AGG + chr1_2:28296479-28296498 None:intergenic 25.0%
! GTCATTGATAAAATGAAAAG+TGG - chr1_2:28297106-28297125 Msa0065680:intron 25.0%
!! AAAACCAAAATCCTAACTTT+TGG + chr1_2:28297163-28297182 None:intergenic 25.0%
! TTGACAAGCAAAATGATTTA+AGG + chr1_2:28297294-28297313 None:intergenic 25.0%
CAGAGGAAAATTAAACATAG+TGG + chr1_2:28294794-28294813 None:intergenic 30.0%
AGCATATTCAAATAACACAG+AGG + chr1_2:28294811-28294830 None:intergenic 30.0%
! TAAGTTTTGCGAGACTATTA+GGG + chr1_2:28295419-28295438 None:intergenic 30.0%
! TACGATTTTACACATCGTAT+TGG + chr1_2:28295466-28295485 None:intergenic 30.0%
!!! GAATGGTGTTTTATTTTACC+TGG - chr1_2:28295598-28295617 Msa0065680:intron 30.0%
!! ATATTTGTTTTCAGAGATGG+AGG - chr1_2:28295862-28295881 Msa0065680:intron 30.0%
CTTACAGAAAGTGAATTGAT+GGG + chr1_2:28296031-28296050 None:intergenic 30.0%
ACTTACAGAAAGTGAATTGA+TGG + chr1_2:28296032-28296051 None:intergenic 30.0%
TTCACTTTCTGTAAGTTTGA+CGG - chr1_2:28296036-28296055 Msa0065680:CDS 30.0%
!! ATCAAGCAAGTATTTTGGAA+AGG + chr1_2:28296070-28296089 None:intergenic 30.0%
!!! TATCTAGTTTTGACTTGTTG+AGG - chr1_2:28296095-28296114 Msa0065680:CDS 30.0%
CACTAGCTAATATTCTACTT+TGG + chr1_2:28296203-28296222 None:intergenic 30.0%
TCCTTTAAGCATCAATGTAT+TGG - chr1_2:28296244-28296263 Msa0065680:intron 30.0%
CATGAAAACTTTGATGCAAA+CGG + chr1_2:28296320-28296339 None:intergenic 30.0%
CTTCACATAACTCATAAGTA+TGG + chr1_2:28296487-28296506 None:intergenic 30.0%
ATTTGATGCTTCAAAAGATC+CGG + chr1_2:28296630-28296649 None:intergenic 30.0%
!! TTTTTAGTCCATTTTTGCTG+TGG - chr1_2:28297214-28297233 Msa0065680:intron 30.0%
!! TTTTAGTCCATTTTTGCTGT+GGG - chr1_2:28297215-28297234 Msa0065680:intron 30.0%
! TTAAAATTTTGCAGTTAGGG+AGG - chr1_2:28297268-28297287 Msa0065680:intron 30.0%
ATGTACTTTGATTGAGGATT+AGG - chr1_2:28297367-28297386 Msa0065680:five_prime_UTR 30.0%
TGTACTTTGATTGAGGATTA+GGG - chr1_2:28297368-28297387 Msa0065680:five_prime_UTR 30.0%
GTTCAGATAAGCATAATGAA+TGG + chr1_2:28297423-28297442 None:intergenic 30.0%
TGCTTATCTGAACTAATTCT+AGG - chr1_2:28297430-28297449 Msa0065680:five_prime_UTR 30.0%
!! AATTCTAGGTTGATGAATAG+TGG - chr1_2:28297444-28297463 Msa0065680:five_prime_UTR 30.0%
! GTGGTGTAGTAAAATTTTTG+AGG - chr1_2:28297463-28297482 Msa0065680:five_prime_UTR 30.0%
AAGAGAATTGAGAGACTGAA+AGG + chr1_2:28294579-28294598 None:intergenic 35.0%
! TCAGTCTCTCAATTCTCTTT+TGG - chr1_2:28294580-28294599 Msa0065680:three_prime_UTR 35.0%
! CAGTCTCTCAATTCTCTTTT+GGG - chr1_2:28294581-28294600 Msa0065680:three_prime_UTR 35.0%
! AGTCTCTCAATTCTCTTTTG+GGG - chr1_2:28294582-28294601 Msa0065680:three_prime_UTR 35.0%
GAAGGAATAATGAAATGGGT+TGG - chr1_2:28294878-28294897 Msa0065680:three_prime_UTR 35.0%
AATGGTGAAGAGAGTCAAAA+TGG + chr1_2:28294914-28294933 None:intergenic 35.0%
TGTCTTAGTGAGTGAAAATG+TGG - chr1_2:28295069-28295088 Msa0065680:CDS 35.0%
AATAAGCCGTTTATCCAAAC+AGG + chr1_2:28295218-28295237 None:intergenic 35.0%
! GTAAGTTTTGCGAGACTATT+AGG + chr1_2:28295420-28295439 None:intergenic 35.0%
TTGGATTTCTCATCTGACAT+AGG - chr1_2:28295908-28295927 Msa0065680:intron 35.0%
GCCAATACATTGATGCTTAA+AGG + chr1_2:28296248-28296267 None:intergenic 35.0%
! AGCATCAATGTATTGGCATT+TGG - chr1_2:28296251-28296270 Msa0065680:intron 35.0%
TACTTGTGATCACTGTTTCA+TGG - chr1_2:28296340-28296359 Msa0065680:intron 35.0%
TCCTGGAACATGAAAATAAG+CGG + chr1_2:28296519-28296538 None:intergenic 35.0%
!! TCTTTGGAAGTTTTGGTACT+CGG + chr1_2:28296834-28296853 None:intergenic 35.0%
!! CACTTTCTCTTTGGAAGTTT+TGG + chr1_2:28296841-28296860 None:intergenic 35.0%
! GGTTTGTTTCACTTTCTCTT+TGG + chr1_2:28296850-28296869 None:intergenic 35.0%
! CATGCATTACAAAGTGTCTT+TGG + chr1_2:28296945-28296964 None:intergenic 35.0%
AAGACACTTTGTAATGCATG+TGG - chr1_2:28296945-28296964 Msa0065680:intron 35.0%
AGACACTTTGTAATGCATGT+GGG - chr1_2:28296946-28296965 Msa0065680:intron 35.0%
CATTTAGCATGCCAAAAGTT+AGG - chr1_2:28297149-28297168 Msa0065680:intron 35.0%
! CATGCCAAAAGTTAGGATTT+TGG - chr1_2:28297156-28297175 Msa0065680:intron 35.0%
AAAACATCCCACAGCAAAAA+TGG + chr1_2:28297225-28297244 None:intergenic 35.0%
! TCATTTGACTGTTTTCATGC+TGG - chr1_2:28297340-28297359 Msa0065680:intron 35.0%
GGTAACATGTACTTTGATTG+AGG - chr1_2:28297361-28297380 Msa0065680:five_prime_UTR 35.0%
AGTACACAAACGTGAAAAGC+TGG - chr1_2:28294668-28294687 Msa0065680:three_prime_UTR 40.0%
CAAGCAAGAAAAAGAGGGAA+AGG + chr1_2:28294760-28294779 None:intergenic 40.0%
! AGTGGGTGTGATAGTATTGA+AGG - chr1_2:28294860-28294879 Msa0065680:three_prime_UTR 40.0%
!! GGAATAATGAAATGGGTTGG+TGG - chr1_2:28294881-28294900 Msa0065680:three_prime_UTR 40.0%
!! TAATCTTTTCTGACTAGCCG+CGG - chr1_2:28295191-28295210 Msa0065680:CDS 40.0%
TGTCAGATGAGAAATCCAAG+AGG + chr1_2:28295907-28295926 None:intergenic 40.0%
TTTCTCATCTGACATAGGTG+AGG - chr1_2:28295913-28295932 Msa0065680:intron 40.0%
AGTGAAGGAAAGGCTTTCTT+AGG + chr1_2:28295956-28295975 None:intergenic 40.0%
!! TTCTGGTTTGAGTGAAGGAA+AGG + chr1_2:28295966-28295985 None:intergenic 40.0%
TGAATTGATGGGATCATCCA+GGG + chr1_2:28296020-28296039 None:intergenic 40.0%
TGAATGCCTGAGTTTACTTG+AGG - chr1_2:28296449-28296468 Msa0065680:intron 40.0%
GGAATTCCTCAAGTAAACTC+AGG + chr1_2:28296458-28296477 None:intergenic 40.0%
!! GCTTATTTTCATGTTCCAGG+AGG - chr1_2:28296518-28296537 Msa0065680:intron 40.0%
! TATTTTCATGTTCCAGGAGG+AGG - chr1_2:28296521-28296540 Msa0065680:intron 40.0%
GTCCAACAAAGATGCATTTC+CGG - chr1_2:28296569-28296588 Msa0065680:intron 40.0%
TCAACAAACGTTTCAACAGC+CGG + chr1_2:28296591-28296610 None:intergenic 40.0%
TGAGTTGTCCTGTATTCAAC+CGG - chr1_2:28296608-28296627 Msa0065680:intron 40.0%
CAAAAGATCCGGTTGAATAC+AGG + chr1_2:28296619-28296638 None:intergenic 40.0%
ACTTAAGAGGGTAATGCTGT+TGG + chr1_2:28296706-28296725 None:intergenic 40.0%
AACAGCATTACCCTCTTAAG+TGG - chr1_2:28296705-28296724 Msa0065680:intron 40.0%
GTGATTGTAGCCACTTAAGA+GGG + chr1_2:28296718-28296737 None:intergenic 40.0%
TGTGATTGTAGCCACTTAAG+AGG + chr1_2:28296719-28296738 None:intergenic 40.0%
TGAAACAAACCCCAACCATT+GGG - chr1_2:28296859-28296878 Msa0065680:intron 40.0%
ATGATGACATTTCCTCCCAA+TGG + chr1_2:28296877-28296896 None:intergenic 40.0%
!! GAGTTGATGATACTCCACAA+TGG - chr1_2:28296901-28296920 Msa0065680:intron 40.0%
! CAAAGTGTCTTTGGACCATT+TGG + chr1_2:28296936-28296955 None:intergenic 40.0%
GACACTTTGTAATGCATGTG+GGG - chr1_2:28296947-28296966 Msa0065680:intron 40.0%
TTTGTAATGCATGTGGGGTT+AGG - chr1_2:28296952-28296971 Msa0065680:intron 40.0%
ACATGCATTCTAATTCCCAC+AGG - chr1_2:28297036-28297055 Msa0065680:intron 40.0%
TAATTCCCACAGGAAAGTAG+TGG - chr1_2:28297046-28297065 Msa0065680:intron 40.0%
!! TTGCTGTGGGATGTTTTAGA+TGG - chr1_2:28297228-28297247 Msa0065680:intron 40.0%
TGAAAGGAACCAACGAGAGA+TGG + chr1_2:28294563-28294582 None:intergenic 45.0%
!! AATCTTTTCTGACTAGCCGC+GGG - chr1_2:28295192-28295211 Msa0065680:CDS 45.0%
!! CTGCATTCTGGTTTGAGTGA+AGG + chr1_2:28295971-28295990 None:intergenic 45.0%
GTGAATTGATGGGATCATCC+AGG + chr1_2:28296021-28296040 None:intergenic 45.0%
TCCGAGATTGTTAGTGTCTG+CGG - chr1_2:28296277-28296296 Msa0065680:intron 45.0%
ACCGCAGACACTAACAATCT+CGG + chr1_2:28296281-28296300 None:intergenic 45.0%
GTTTCATGGTTTCCATGTCG+TGG - chr1_2:28296354-28296373 Msa0065680:intron 45.0%
!! GCCGCTTATTTTCATGTTCC+AGG - chr1_2:28296515-28296534 Msa0065680:intron 45.0%
TTGCAGAAGAGGAGCTTGAA+TGG - chr1_2:28296544-28296563 Msa0065680:intron 45.0%
AGCCGGAAATGCATCTTTGT+TGG + chr1_2:28296574-28296593 None:intergenic 45.0%
! TTGTGCTGTTCTCGAGCTTT+GGG + chr1_2:28296659-28296678 None:intergenic 45.0%
! GTTGTTTCCACGGGAATTGT+AGG + chr1_2:28296812-28296831 None:intergenic 45.0%
! TTGGTACTCGGTTGTTTCCA+CGG + chr1_2:28296822-28296841 None:intergenic 45.0%
GTGAAACAAACCCCAACCAT+TGG - chr1_2:28296858-28296877 Msa0065680:intron 45.0%
ACATTTCCTCCCAATGGTTG+GGG + chr1_2:28296871-28296890 None:intergenic 45.0%
GACATTTCCTCCCAATGGTT+GGG + chr1_2:28296872-28296891 None:intergenic 45.0%
TGACATTTCCTCCCAATGGT+TGG + chr1_2:28296873-28296892 None:intergenic 45.0%
GGGAGGAAATGTCATCATTG+TGG - chr1_2:28296879-28296898 Msa0065680:intron 45.0%
TGTGGGGTTAGGTATAAGTC+TGG - chr1_2:28296963-28296982 Msa0065680:intron 45.0%
GACGGTATTCAGGTACAAGT+CGG + chr1_2:28296989-28297008 None:intergenic 45.0%
CTATTTGCAGGACGGTATTC+AGG + chr1_2:28296999-28297018 None:intergenic 45.0%
AAGTTGGGCTATTTGCAGGA+CGG + chr1_2:28297007-28297026 None:intergenic 45.0%
CGAAAAGTTGGGCTATTTGC+AGG + chr1_2:28297011-28297030 None:intergenic 45.0%
GCATGTCACTGCGAAAAGTT+GGG + chr1_2:28297022-28297041 None:intergenic 45.0%
TGCATGTCACTGCGAAAAGT+TGG + chr1_2:28297023-28297042 None:intergenic 45.0%
CATCTCCACTACTTTCCTGT+GGG + chr1_2:28297054-28297073 None:intergenic 45.0%
TCATCTCCACTACTTTCCTG+TGG + chr1_2:28297055-28297074 None:intergenic 45.0%
! ACAGGAAAGTAGTGGAGATG+AGG - chr1_2:28297054-28297073 Msa0065680:intron 45.0%
ATGAGGAAGCAGAAGGGAAT+GGG - chr1_2:28297071-28297090 Msa0065680:intron 45.0%
! TTTTCAGAGATGGAGGCCCT+TGG - chr1_2:28295869-28295888 Msa0065680:intron 50.0%
GAAGGTGGATCACTGCATTC+TGG + chr1_2:28295983-28296002 None:intergenic 50.0%
TCCACCTTCGCTCAATCCAT+TGG - chr1_2:28295994-28296013 Msa0065680:intron 50.0%
! TGTGCTGTTCTCGAGCTTTG+GGG + chr1_2:28296658-28296677 None:intergenic 50.0%
! CTTGTGCTGTTCTCGAGCTT+TGG + chr1_2:28296660-28296679 None:intergenic 50.0%
! GTAGGTTTGAGGCATCAGCA+AGG + chr1_2:28296794-28296813 None:intergenic 50.0%
CCACGGGAATTGTAGGTTTG+AGG + chr1_2:28296805-28296824 None:intergenic 50.0%
CCTCAAACCTACAATTCCCG+TGG - chr1_2:28296802-28296821 Msa0065680:intron 50.0%
! TGGTACTCGGTTGTTTCCAC+GGG + chr1_2:28296821-28296840 None:intergenic 50.0%
AACAAACCCCAACCATTGGG+AGG - chr1_2:28296862-28296881 Msa0065680:intron 50.0%
AGTGGAGATGAGGAAGCAGA+AGG - chr1_2:28297064-28297083 Msa0065680:intron 50.0%
GTGGAGATGAGGAAGCAGAA+GGG - chr1_2:28297065-28297084 Msa0065680:intron 50.0%
GATGAGGAAGCAGAAGGGAA+TGG - chr1_2:28297070-28297089 Msa0065680:intron 50.0%
GAAGCAGAAGGGAATGGGAA+CGG - chr1_2:28297076-28297095 Msa0065680:intron 50.0%
AAGCAGAAGGGAATGGGAAC+GGG - chr1_2:28297077-28297096 Msa0065680:intron 50.0%
CTCTCTTGCCTGCTACTAGC+TGG - chr1_2:28294629-28294648 Msa0065680:three_prime_UTR 55.0%
GACAAGAGCCAGCTAGTAGC+AGG + chr1_2:28294640-28294659 None:intergenic 55.0%
CGTTTATCCAAACAGGCCCG+CGG + chr1_2:28295211-28295230 None:intergenic 55.0%
CGCGGGCCTGTTTGGATAAA+CGG - chr1_2:28295209-28295228 Msa0065680:CDS 55.0%
GAGGTCGTCCACAGAACCAA+GGG + chr1_2:28295888-28295907 None:intergenic 55.0%
AGAGGTCGTCCACAGAACCA+AGG + chr1_2:28295889-28295908 None:intergenic 55.0%
! TGGTTCTGTGGACGACCTCT+TGG - chr1_2:28295889-28295908 Msa0065680:intron 55.0%
!! GCCAATGGATTGAGCGAAGG+TGG + chr1_2:28295998-28296017 None:intergenic 55.0%
!! AGGGCCAATGGATTGAGCGA+AGG + chr1_2:28296001-28296020 None:intergenic 55.0%
TTCGCTCAATCCATTGGCCC+TGG - chr1_2:28296000-28296019 Msa0065680:intron 55.0%
ATGGGATCATCCAGGGCCAA+TGG + chr1_2:28296013-28296032 None:intergenic 55.0%
AGAGATGCAGCTCCACGACA+TGG + chr1_2:28296369-28296388 None:intergenic 55.0%
TGAAGTTCCCTGTCCGTGCA+CGG - chr1_2:28296739-28296758 Msa0065680:intron 55.0%
! TACGAGACTTGCTCCGTGCA+CGG + chr1_2:28296755-28296774 None:intergenic 55.0%
! TTGAGGCATCAGCAAGGCCA+AGG + chr1_2:28296788-28296807 None:intergenic 55.0%
GATACTCCACAATGGCGTGC+AGG - chr1_2:28296909-28296928 Msa0065680:intron 55.0%
TTTGGACCTGCACGCCATTG+TGG + chr1_2:28296918-28296937 None:intergenic 55.0%
CAATGGCGTGCAGGTCCAAA+TGG - chr1_2:28296918-28296937 Msa0065680:intron 55.0%
!! GATGGAGGCCCTTGGTTCTG+TGG - chr1_2:28295877-28295896 Msa0065680:intron 60.0%
CCTCTTCTGCAACCTCCTCC+TGG + chr1_2:28296536-28296555 None:intergenic 60.0%
CCAGGAGGAGGTTGCAGAAG+AGG - chr1_2:28296533-28296552 Msa0065680:intron 60.0%
ACTTGCTCCGTGCACGGACA+GGG + chr1_2:28296749-28296768 None:intergenic 60.0%
TCTCGTAGCAAGCCTCGCCT+TGG - chr1_2:28296768-28296787 Msa0065680:intron 60.0%
! TGACTAGCCGCGGGCCTGTT+TGG - chr1_2:28295201-28295220 Msa0065680:CDS 65.0%
! GACTTGCTCCGTGCACGGAC+AGG + chr1_2:28296750-28296769 None:intergenic 65.0%
GCATCAGCAAGGCCAAGGCG+AGG + chr1_2:28296783-28296802 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 28294557 28297491 28294557 ID=Msa0065680;Name=Msa0065680
chr1_2 mRNA 28294557 28297491 28294557 ID=Msa0065680-mRNA-1;Parent=Msa0065680;Name=Msa0065680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=135|1|1|1|0.5|0.66|3|388|244
chr1_2 exon 28294557 28295511 28294557 ID=Msa0065680-mRNA-1:exon:9737;Parent=Msa0065680-mRNA-1
chr1_2 exon 28296003 28296172 28296003 ID=Msa0065680-mRNA-1:exon:9736;Parent=Msa0065680-mRNA-1
chr1_2 exon 28297359 28297491 28297359 ID=Msa0065680-mRNA-1:exon:9735;Parent=Msa0065680-mRNA-1
chr1_2 five_prime_UTR 28297359 28297491 28297359 ID=Msa0065680-mRNA-1:five_prime_utr;Parent=Msa0065680-mRNA-1
chr1_2 five_prime_UTR 28296171 28296172 28296171 ID=Msa0065680-mRNA-1:five_prime_utr;Parent=Msa0065680-mRNA-1
chr1_2 CDS 28296003 28296170 28296003 ID=Msa0065680-mRNA-1:cds;Parent=Msa0065680-mRNA-1
chr1_2 CDS 28294945 28295511 28294945 ID=Msa0065680-mRNA-1:cds;Parent=Msa0065680-mRNA-1
chr1_2 three_prime_UTR 28294557 28294944 28294557 ID=Msa0065680-mRNA-1:three_prime_utr;Parent=Msa0065680-mRNA-1
Gene Sequence

>Msa0065680

ATGGAGGCCCTTGGTTCTGTGGACGACCTCTTGGATTTCTCATCTGACATAGGTGAGGATGATGATGATGACAAACCTAAGAAAGCCTTTCCTTCACTCAAACCAGAATGCAGTGATCCACCTTCGCTCAATCCATTGGCCCTGGATGATCCCATCAATTCACTTTCTGAGGAGGTTGCAGAAGAGGAGCTTGAATGGCTGTCCAACAAAGATGCATTTCCGGCTGTTGAAACGTTTGTTGAGTTGTCCTGTATTCAACCGGATCTTTTGAAGCATCAAATGACATCCCCAAAGCTCGAGAACAGCACAAGCAGCAGCAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCACATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGCAAGCCTCGCCTTGGCCTTGCTGATGCCTCAAACCTACAATTCCCGTGGAAACAACCGAGTACCAAAACTTCCAAAGAGAAAGTGAAACAAACCCCAACCATTGGGAGGAAATGTCATCATTGTGGAGTTGATGATACTCCACAATGGCGTGCAGGTCCAAATGGTCCAAAGACACTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTACCTGAATACCGTCCTGCAAATAGCCCAACTTTTCGCAGTGACATGCATTCTAATTCCCACAGGAAAGTAGTGGAGATGAGGAAGCAGAAGGGAATGGGAACGGGTTGA

Protein sequence

>Msa0065680

MEALGSVDDLLDFSSDIGEDDDDDKPKKAFPSLKPECSDPPSLNPLALDDPINSLSEEVAEEELEWLSNKDAFPAVETFVELSCIQPDLLKHQMTSPKLENSTSSSNSNNSSNSITLLSGYNHMKFPVRARSKSRSKPRLGLADASNLQFPWKQPSTKTSKEKVKQTPTIGRKCHHCGVDDTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRSDMHSNSHRKVVEMRKQKGMGTG*