AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713870 MtrunA17_Chr5g0401141 99.662 592 2 0 1 592 1 592 0.0 1232
Msa0713870 MtrunA17_Chr8g0351571 56.774 155 67 0 347 501 3 157 3.96e-57 189
Msa0713870 MtrunA17_Chr7g0266721 51.370 146 71 0 347 492 12 157 5.81e-48 165
Msa0713870 MtrunA17_Chr2g0321111 49.007 151 77 0 347 497 464 614 1.02e-42 162
Msa0713870 MtrunA17_Chr2g0288371 46.988 166 86 2 341 504 9 174 2.29e-36 142
Msa0713870 MtrunA17_Chr7g0260441 50.340 147 59 5 358 492 25 169 7.64e-33 134
Msa0713870 MtrunA17_Chr4g0045321 44.737 152 71 4 354 493 18 168 1.31e-32 129
Msa0713870 MtrunA17_Chr8g0374621 40.609 197 82 6 354 516 18 213 2.20e-32 128
Msa0713870 MtrunA17_Chr6g0484281 39.521 167 93 2 347 505 3 169 1.09e-31 130
Msa0713870 MtrunA17_Chr7g0274841 52.206 136 53 4 354 478 18 152 1.46e-31 120
Msa0713870 MtrunA17_Chr1g0213971 47.222 144 71 4 354 493 94 236 5.20e-31 121
Msa0713870 MtrunA17_Chr8g0357591 38.922 167 94 2 347 505 3 169 2.50e-30 125
Msa0713870 MtrunA17_Chr1g0193711 47.586 145 70 5 354 493 99 242 4.38e-30 119
Msa0713870 MtrunA17_Chr7g0270991 45.833 144 73 4 354 493 110 252 1.72e-29 117
Msa0713870 MtrunA17_Chr4g0038431 49.265 136 57 4 354 478 18 152 1.10e-28 112
Msa0713870 MtrunA17_Chr3g0145501 48.529 136 58 4 354 478 26 160 6.00e-28 110
Msa0713870 MtrunA17_Chr8g0353571 45.455 143 67 4 354 486 32 173 9.29e-28 110
Msa0713870 MtrunA17_Chr3g0104751 47.761 134 58 4 354 476 48 180 9.41e-28 110
Msa0713870 MtrunA17_Chr3g0113441 42.604 169 70 6 325 476 52 210 8.25e-27 108
Msa0713870 MtrunA17_Chr4g0037281 41.892 148 74 4 356 492 63 209 4.11e-24 100
Msa0713870 MtrunA17_Chr3g0138061 40.411 146 73 5 359 492 29 172 2.76e-19 92.4
Msa0713870 MtrunA17_Chr1g0199071 34.641 153 92 3 345 496 80 225 1.03e-17 82.8
Msa0713870 MtrunA17_Chr1g0149061 39.850 133 66 5 358 478 25 155 7.74e-17 84.3
Msa0713870 MtrunA17_Chr1g0163031 30.464 151 100 3 345 495 79 224 2.56e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713870 AT5G67530.1 76.254 598 133 5 1 592 1 595 0.0 908
Msa0713870 AT1G01940.1 55.484 155 69 0 347 501 3 157 3.35e-56 187
Msa0713870 AT2G36130.1 50.685 146 72 0 347 492 12 157 2.56e-49 169
Msa0713870 AT3G44600.1 50.331 151 75 0 347 497 478 628 3.73e-42 161
Msa0713870 AT4G33060.1 44.910 167 89 3 341 504 9 175 2.01e-39 151
Msa0713870 AT1G53720.2 40.719 167 91 2 347 505 3 169 6.65e-34 132
Msa0713870 AT5G13120.1 48.951 143 68 4 354 492 107 248 7.80e-34 130
Msa0713870 AT5G13120.2 48.951 143 68 4 354 492 103 244 8.45e-34 129
Msa0713870 AT3G63400.2 49.660 147 60 5 358 492 25 169 7.45e-33 130
Msa0713870 AT1G53720.1 40.719 167 91 2 347 505 3 169 9.34e-33 132
Msa0713870 AT3G56070.1 47.799 159 70 5 354 501 18 174 1.54e-32 123
Msa0713870 AT3G56070.2 47.799 159 70 5 354 501 18 174 1.54e-32 123
Msa0713870 AT3G63400.3 49.660 147 60 5 358 492 25 169 7.57e-32 130
Msa0713870 AT3G63400.4 49.660 147 60 5 358 492 25 169 7.57e-32 130
Msa0713870 AT3G63400.1 49.660 147 60 5 358 492 25 169 7.57e-32 130
Msa0713870 AT2G15790.1 45.033 151 70 4 354 492 18 167 4.66e-31 124
Msa0713870 AT2G16600.1 48.000 150 65 5 354 492 19 166 7.30e-30 116
Msa0713870 AT3G62030.3 46.154 143 72 4 354 492 108 249 1.45e-29 118
Msa0713870 AT3G62030.1 46.154 143 72 4 354 492 109 250 1.51e-29 117
Msa0713870 AT4G34870.1 47.020 151 67 5 354 493 18 166 3.36e-29 114
Msa0713870 AT4G38740.1 46.000 150 68 5 354 492 18 165 3.64e-29 114
Msa0713870 AT3G62030.2 46.154 143 72 4 354 492 162 303 4.21e-29 118
Msa0713870 AT2G21130.1 45.333 150 69 5 354 492 19 166 4.24e-29 114
Msa0713870 AT3G55920.1 49.254 134 56 4 354 476 73 205 1.07e-28 114
Msa0713870 AT2G29960.1 49.254 134 56 4 354 476 46 178 2.03e-27 110
Msa0713870 AT2G29960.3 49.254 134 56 4 354 476 46 178 2.03e-27 110
Msa0713870 AT5G58710.1 42.675 157 66 5 354 487 49 204 5.72e-26 106
Msa0713870 AT2G38730.1 42.000 150 76 4 354 493 46 194 2.03e-25 104
Msa0713870 AT4G34960.1 40.000 150 78 4 354 492 61 209 5.25e-23 98.2
Msa0713870 AT2G16600.2 44.615 130 56 3 354 481 19 134 7.93e-22 92.8
Msa0713870 AT2G29960.2 44.030 134 53 5 354 476 46 168 8.30e-21 90.9
Msa0713870 AT4G34960.2 46.667 105 44 4 354 447 61 164 3.87e-19 85.5
Msa0713870 AT2G47320.1 31.646 158 104 3 339 496 72 225 5.03e-16 78.2
Msa0713870 AT4G32420.1 33.333 147 84 5 358 492 25 169 1.44e-12 71.2
Msa0713870 AT4G32420.5 33.333 147 84 5 358 492 25 169 1.44e-12 71.2
Msa0713870 AT4G32420.3 33.333 147 84 5 358 492 25 169 1.44e-12 71.2
Msa0713870 AT4G32420.6 33.333 147 84 5 358 492 25 169 1.44e-12 71.2
Msa0713870 AT1G53780.2 38.043 92 56 1 415 505 4 95 1.93e-12 70.5
Msa0713870 AT4G32420.4 33.835 133 75 4 358 478 25 156 4.99e-12 69.3

Find 157 sgRNAs with CRISPR-Local

Find 457 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAATTGTATTGAAAATT+TGG 0.022268 5_1:+6332391 None:intergenic
TGGGATTGGGTTCCGGTTTC+CGG 0.187538 5_1:+6338760 None:intergenic
TCCCGACATGTTTATGTTAT+AGG 0.188740 5_1:+6334462 None:intergenic
CCTTCCAGAGTGGACTAATT+TGG 0.194082 5_1:+6333561 None:intergenic
CTTCCCCATTGCTAGGGTTT+TGG 0.219469 5_1:+6338683 None:intergenic
TGTACATATCCCTTCTTCTT+TGG 0.242086 5_1:+6333883 None:intergenic
AGAGAAATCTTTGATCTATT+CGG 0.268053 5_1:+6338858 None:intergenic
ACTCCATATATTATAAAATA+TGG 0.273786 5_1:-6337911 Msa0713870:CDS
GAGTTAAGTTCATCCTTAAA+AGG 0.274372 5_1:+6333583 None:intergenic
TTCAGTTGCCCATTCTGTTT+TGG 0.282338 5_1:+6338629 None:intergenic
ACGCACGCGCAGCAATAAAA+AGG 0.292893 5_1:+6338558 None:intergenic
TTGTGATCGTGCAGCTAAAA+TGG 0.299588 5_1:+6334330 None:intergenic
GTAGAGGTGGTGAATCAATT+TGG 0.300503 5_1:-6333612 Msa0713870:CDS
TGGCGGAAAATTTAAATATC+TGG 0.302090 5_1:+6332169 None:intergenic
ACAAATTGTATTGAAAATTT+GGG 0.320416 5_1:+6332392 None:intergenic
ACACTACTGGCGCTGCTTCC+CGG 0.320784 5_1:-6333975 Msa0713870:CDS
AAGTTGAAGATAACAATCTA+TGG 0.320908 5_1:+6338740 None:intergenic
TATGGTAAACATCCTGTTAC+TGG 0.327911 5_1:-6337893 Msa0713870:CDS
CAATCTATGGGATTGGGTTC+CGG 0.328802 5_1:+6338753 None:intergenic
CAACCCTTGCATGTTCATAT+TGG 0.329520 5_1:+6332137 None:intergenic
GCTTGCTCTTCTTCCTCATC+TGG 0.351194 5_1:+6332765 None:intergenic
TAGAGGTGGTGAATCAATTT+GGG 0.354211 5_1:-6333611 Msa0713870:CDS
TCCTCATCTGGCTCGGTGTA+AGG 0.356961 5_1:+6332777 None:intergenic
CGCTGAAAATCGCCGGAAAC+CGG 0.359282 5_1:-6338772 Msa0713870:five_prime_UTR
AGCCACATGCATAGCTATTC+TGG 0.365801 5_1:+6334180 None:intergenic
ACCTTCTGGTCAAGTGCATT+AGG 0.369714 5_1:+6334685 None:intergenic
AGGAGCTCCATCGGTCGATT+TGG 0.372599 5_1:+6334294 None:intergenic
AACTGACCTGAATTGTTATA+AGG 0.374079 5_1:+6334798 None:intergenic
ATCTTTGATCTATTCGGCTT+CGG 0.379802 5_1:+6338864 None:intergenic
GATGAAGTTCTCGCATGCCC+TGG 0.382051 5_1:+6333807 None:intergenic
GGATGACCTTATAACAATTC+AGG 0.382294 5_1:-6334804 Msa0713870:intron
TCACCGACGAGGCATTTACT+AGG 0.383522 5_1:-6334826 Msa0713870:CDS
AAGATAACAATCTATGGGAT+TGG 0.396366 5_1:+6338746 None:intergenic
GAGTTCTTGTGAAAAGTTAG+TGG 0.396927 5_1:+6337842 None:intergenic
GTTGCTTCTTCCCCATTGCT+AGG 0.401850 5_1:+6338676 None:intergenic
TTCAAGGGAGCTCCAGTAAC+AGG 0.404366 5_1:+6337881 None:intergenic
ACTTGACCAGAAGGTTCTTC+TGG 0.406350 5_1:-6334677 Msa0713870:CDS
CAAAATCCAGAAGAACCTTC+TGG 0.412431 5_1:+6334671 None:intergenic
AACAGAATGGGCAACTGAAT+GGG 0.413642 5_1:-6338625 Msa0713870:CDS
GATTCAGATGTTCCAGCTCC+AGG 0.414464 5_1:+6332578 None:intergenic
CTCTTCTTCCTCATCTGGCT+CGG 0.430426 5_1:+6332770 None:intergenic
GGAGCTGGAACATCTGAATC+TGG 0.432526 5_1:-6332575 Msa0713870:CDS
CTGCCATCAGGTGTACAAAC+TGG 0.433550 5_1:+6338436 None:intergenic
ATCGACCGATGGAGCTCCTC+AGG 0.442437 5_1:-6334290 Msa0713870:CDS
CAGGAGGAAATCAAGATAAC+AGG 0.443423 5_1:-6332819 Msa0713870:CDS
AATGAGATCTTGTTGCTTCA+AGG 0.444400 5_1:+6337865 None:intergenic
GTGAAAACTTTGTTTAGCAC+TGG 0.453174 5_1:+6335036 None:intergenic
GGCTCATGGTATAGTAATCC+TGG 0.456340 5_1:-6332596 Msa0713870:CDS
AGATAACAATCTATGGGATT+GGG 0.458370 5_1:+6338747 None:intergenic
AAACAAATGCTTAAAGAGCT+TGG 0.459982 5_1:-6334433 Msa0713870:CDS
TGAGAAGAATCCAAAGAAGA+AGG 0.463758 5_1:-6333893 Msa0713870:CDS
GACATGTTTATGTTATAGGC+TGG 0.464280 5_1:+6334466 None:intergenic
CTATGCATGTGGCTGGTGAC+AGG 0.466621 5_1:-6334171 Msa0713870:CDS
ACAGGTGTTGGCGGTGGTGT+TGG 0.468240 5_1:-6332548 Msa0713870:CDS
TTGCTTCTTCCCCATTGCTA+GGG 0.471389 5_1:+6338677 None:intergenic
ATGAGATCTTGTTGCTTCAA+GGG 0.472562 5_1:+6337866 None:intergenic
TTGGCAAATACTTGAAAGCT+AGG 0.473260 5_1:-6332529 Msa0713870:CDS
AAACAGAATGGGCAACTGAA+TGG 0.475308 5_1:-6338626 Msa0713870:CDS
TGGAAATGTCTTCTGCTATG+AGG 0.475926 5_1:-6334980 Msa0713870:intron
TAAACCAAAACCCTAGCAAT+GGG 0.476283 5_1:-6338687 Msa0713870:exon
AACAGTGGCCCACATACTAA+TGG 0.478597 5_1:-6333520 Msa0713870:CDS
GGTCGGTCACTGTCATCAAC+AGG 0.480063 5_1:+6333388 None:intergenic
CCAAATTAGTCCACTCTGGA+AGG 0.483082 5_1:-6333561 Msa0713870:CDS
GTTAAAAGTCGTTACACTAC+TGG 0.485111 5_1:-6333988 Msa0713870:CDS
ACATCGAAGACGCTGCCATC+AGG 0.486187 5_1:+6338424 None:intergenic
GCCTATAACATAAACATGTC+GGG 0.491731 5_1:-6334463 Msa0713870:CDS
GTTCATATTGGTTAATTACA+TGG 0.493878 5_1:+6332149 None:intergenic
TACACTAGCAACAATGGAAA+AGG 0.495791 5_1:-6333413 Msa0713870:CDS
ACATCTGAATCTGGAGGTAC+AGG 0.497797 5_1:-6332566 Msa0713870:CDS
GTTCTTAACCAAAACAGAAT+GGG 0.498235 5_1:-6338637 Msa0713870:CDS
CTCACCATCTTTGCATTCAC+CGG 0.498409 5_1:+6334145 None:intergenic
GAAAGCTAGGAATGCTCCAC+CGG 0.498700 5_1:-6332516 Msa0713870:CDS
ATTGTGGCAGTCAAAACTAC+TGG 0.503952 5_1:-6335000 Msa0713870:CDS
GGAAAGGAAACTGCATTGCA+TGG 0.504017 5_1:-6334400 Msa0713870:CDS
GCTGCATCTGCTGCAGTACA+TGG 0.505736 5_1:-6334250 Msa0713870:CDS
TTGGTTTATCACTTCTGTGG+TGG 0.508591 5_1:+6338702 None:intergenic
ATGAAGTTCTCGCATGCCCT+GGG 0.508823 5_1:+6333808 None:intergenic
TGTTCTTAACCAAAACAGAA+TGG 0.518902 5_1:-6338638 Msa0713870:CDS
TCGACAGCAGCAGGTTCAGC+CGG 0.519443 5_1:+6332497 None:intergenic
AACTGGGAACCATTAGTATG+TGG 0.522616 5_1:+6333511 None:intergenic
TTTGCATTTCAGGACAAGGT+TGG 0.522665 5_1:-6332617 Msa0713870:intron
GGAAAATTTAAATATCTGGC+AGG 0.523175 5_1:+6332173 None:intergenic
CGACACTGGTACAGCCGTTG+TGG 0.526101 5_1:-6332477 Msa0713870:CDS
TGATGACAGTGACCGACCTC+TGG 0.527741 5_1:-6333383 Msa0713870:intron
TGGTATAGTAATCCTGGAGC+TGG 0.532781 5_1:-6332590 Msa0713870:CDS
AAAAGGAAGACGTTTGAAAA+CGG 0.536043 5_1:+6338575 None:intergenic
TCCTAATGCACTTGACCAGA+AGG 0.536364 5_1:-6334686 Msa0713870:CDS
ATGATGTAGAAGTAAAAGAC+CGG 0.536884 5_1:+6333956 None:intergenic
GGAGGTACAGGTGTTGGCGG+TGG 0.538393 5_1:-6332554 Msa0713870:CDS
TGCACTGTGATATAGCGCCC+AGG 0.543902 5_1:-6333825 Msa0713870:CDS
AAAGAGCTTGGAACTGAGCA+AGG 0.545096 5_1:-6334421 Msa0713870:CDS
GATCCTACTGGTACTGGTAG+AGG 0.546770 5_1:-6333628 Msa0713870:CDS
TGATTTGCACCGCCGTGTGG+AGG 0.547099 5_1:+6338818 None:intergenic
AGCCTATAACATAAACATGT+CGG 0.547101 5_1:-6334464 Msa0713870:CDS
CAAATTAGTCCACTCTGGAA+GGG 0.547791 5_1:-6333560 Msa0713870:CDS
GGCACCGGTGAATGCAAAGA+TGG 0.550158 5_1:-6334149 Msa0713870:intron
GGTGGCGATCCTACTGGTAC+TGG 0.550338 5_1:-6333634 Msa0713870:CDS
GAAAGGAAACTGCATTGCAT+GGG 0.550522 5_1:-6334399 Msa0713870:CDS
TGTGAACGTGGATATTATAA+CGG 0.556057 5_1:-6333778 Msa0713870:CDS
TTAACCAATATGAACATGCA+AGG 0.557703 5_1:-6332141 None:intergenic
GAGAAGAATCCAAAGAAGAA+GGG 0.558567 5_1:-6333892 Msa0713870:CDS
AAATTAGTCCACTCTGGAAG+GGG 0.560803 5_1:-6333559 Msa0713870:CDS
GAACCTGCTGCTGTCGACAC+TGG 0.561503 5_1:-6332491 Msa0713870:CDS
ATACAAGGTGGCGATCCTAC+TGG 0.561736 5_1:-6333640 Msa0713870:CDS
GTACCAGTGTCGACAGCAGC+AGG 0.562548 5_1:+6332488 None:intergenic
GACACTGGTACAGCCGTTGT+GGG 0.562924 5_1:-6332476 Msa0713870:CDS
GAATCTGGAGGTACAGGTGT+TGG 0.565131 5_1:-6332560 Msa0713870:CDS
TCTGGAGGTACAGGTGTTGG+CGG 0.566682 5_1:-6332557 Msa0713870:CDS
GTACAAACTGGAAACTCAAA+CGG 0.568509 5_1:+6338448 None:intergenic
AACTCCAAATTAGTCCACTC+TGG 0.569288 5_1:-6333565 Msa0713870:CDS
GTTTGATTTGCACCGCCGTG+TGG 0.569381 5_1:+6338815 None:intergenic
TTCATCACGCTCTGTGAACG+TGG 0.570926 5_1:-6333790 Msa0713870:CDS
ACAGCAGCAGGTTCAGCCGG+TGG 0.572103 5_1:+6332500 None:intergenic
TTCAGGACAAGGTTGGCTCA+TGG 0.574231 5_1:-6332610 Msa0713870:intron
AGTTGAAGATAACAATCTAT+GGG 0.578635 5_1:+6338741 None:intergenic
TAAAATGGCAGCGAGTGCAG+CGG 0.579946 5_1:+6334345 None:intergenic
GAGTGCCTGAGGAGCTCCAT+CGG 0.581000 5_1:+6334285 None:intergenic
TGTGGCTGGTGACAGGGCAC+CGG 0.581705 5_1:-6334164 Msa0713870:CDS
AACACGCCGCTGAAAATCGC+CGG 0.583314 5_1:-6338779 Msa0713870:five_prime_UTR
AATTTGAAAATTGACGATGA+AGG 0.585312 5_1:-6334634 Msa0713870:intron
TAACCAATATGAACATGCAA+GGG 0.585768 5_1:-6332140 None:intergenic
TTTCCAGTTTGTACACCTGA+TGG 0.588037 5_1:-6338439 Msa0713870:CDS
TGGAAGGGGTGTAGTTAGCA+TGG 0.588160 5_1:-6333545 Msa0713870:CDS
CACCGACGAGGCATTTACTA+GGG 0.589724 5_1:-6334825 Msa0713870:CDS
ATTGACTACACTAGCAACAA+TGG 0.592417 5_1:-6333419 Msa0713870:CDS
ATCCCTAGTAAATGCCTCGT+CGG 0.595336 5_1:+6334823 None:intergenic
TCCTTACACCGAGCCAGATG+AGG 0.597914 5_1:-6332778 Msa0713870:CDS
GCTTGGAACTGAGCAAGGAA+AGG 0.602840 5_1:-6334416 Msa0713870:CDS
AGAATAGCTATGCATGTGGC+TGG 0.603645 5_1:-6334178 Msa0713870:CDS
ATAAACCAAAACCCTAGCAA+TGG 0.604679 5_1:-6338688 Msa0713870:exon
AAGAGAAAAGCAGTTGTCAG+TGG 0.606073 5_1:-6332449 Msa0713870:CDS
CACTGAATTTACCCACATTG+TGG 0.607025 5_1:-6335016 Msa0713870:CDS
GCACTGTGATATAGCGCCCA+GGG 0.612039 5_1:-6333824 Msa0713870:CDS
TAGTAAATGCCTCGTCGGTG+AGG 0.617674 5_1:+6334828 None:intergenic
TATGCATGTGGCTGGTGACA+GGG 0.618344 5_1:-6334170 Msa0713870:CDS
ACTGGGAACCATTAGTATGT+GGG 0.619509 5_1:+6333512 None:intergenic
ACAGAATGGGCAACTGAATG+GGG 0.621742 5_1:-6338624 Msa0713870:CDS
AAAGGAAACTGCATTGCATG+GGG 0.624761 5_1:-6334398 Msa0713870:CDS
GAAGATTCCAAATCGACCGA+TGG 0.632221 5_1:-6334301 Msa0713870:CDS
AGAGGTGGTGAATCAATTTG+GGG 0.636786 5_1:-6333610 Msa0713870:CDS
GTTGCACTCATGTTCCGTTG+TGG 0.644597 5_1:-6332222 Msa0713870:three_prime_UTR
TGATGTAGAAGTAAAAGACC+GGG 0.648897 5_1:+6333957 None:intergenic
CATATTGGTTAATTACATGG+CGG 0.652239 5_1:+6332152 None:intergenic
GTAGTTAGCATGGCAAACAG+TGG 0.660220 5_1:-6333535 Msa0713870:CDS
TCTACAATACTGAGTGCCTG+AGG 0.667099 5_1:+6334274 None:intergenic
CCACCTCTACCAGTACCAGT+AGG 0.670311 5_1:+6333625 None:intergenic
CCTACTGGTACTGGTAGAGG+TGG 0.680494 5_1:-6333625 Msa0713870:CDS
GAATGGGCAACTGAATGGGG+AGG 0.681661 5_1:-6338621 Msa0713870:CDS
ATTTACGACTCACCAGAGGT+CGG 0.685790 5_1:+6333371 None:intergenic
TGCCAGAATAGCTATGCATG+TGG 0.688708 5_1:-6334182 Msa0713870:CDS
GAAGGAGCTCCTCACCGACG+AGG 0.690654 5_1:-6334837 Msa0713870:CDS
GCTGGAACATCTGAATCTGG+AGG 0.694916 5_1:-6332572 Msa0713870:CDS
GTACAACTGCATACAACACA+CGG 0.699245 5_1:-6333865 Msa0713870:CDS
AAGGAAACTGCATTGCATGG+GGG 0.711732 5_1:-6334397 Msa0713870:CDS
TAACTACACCCCTTCCAGAG+TGG 0.717283 5_1:+6333551 None:intergenic
AAATAACAAGACGACCACAA+CGG 0.717763 5_1:+6332208 None:intergenic
AAACCAAAACCCTAGCAATG+GGG 0.725097 5_1:-6338686 Msa0713870:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACCATATTTTATAATATA+TGG + chr5_1:6333101-6333120 None:intergenic 10.0%
!!! TTTTTTTTTTTGTGAAATAT+TGG - chr5_1:6333558-6333577 Msa0713870:CDS 10.0%
!! ACTCCATATATTATAAAATA+TGG - chr5_1:6333095-6333114 Msa0713870:intron 15.0%
!!! GATTGTATTTTCATATTTAA+GGG + chr5_1:6333497-6333516 None:intergenic 15.0%
!!! TGATTGTATTTTCATATTTA+AGG + chr5_1:6333498-6333517 None:intergenic 15.0%
!! AATTAACTAACTAATTAACT+AGG + chr5_1:6333590-6333609 None:intergenic 15.0%
!! AATTTAATCAATCGTAATAA+TGG - chr5_1:6333819-6333838 Msa0713870:CDS 15.0%
!!! TGAATCTTATTTATTACAAT+AGG + chr5_1:6334020-6334039 None:intergenic 15.0%
!! CTATTGAAAATAGTTTAATT+TGG + chr5_1:6335651-6335670 None:intergenic 15.0%
!!! TTTTTATATATGTATGTTTG+TGG - chr5_1:6336104-6336123 Msa0713870:intron 15.0%
!!! TTTTATATATGTATGTTTGT+GGG - chr5_1:6336105-6336124 Msa0713870:intron 15.0%
!!! CTTTTTAAAAATTGTATGAA+GGG - chr5_1:6336951-6336970 Msa0713870:intron 15.0%
!!! ACTCATTAAATTTTCATTAT+GGG - chr5_1:6337868-6337887 Msa0713870:CDS 15.0%
!! ATTTAAAAAATAAGCTCTTA+AGG + chr5_1:6338013-6338032 None:intergenic 15.0%
!!! TTAAGAGCTTATTTTTTAAA+TGG - chr5_1:6338012-6338031 Msa0713870:intron 15.0%
!! ATAAGTAATCTCAAATATTA+TGG + chr5_1:6338311-6338330 None:intergenic 15.0%
!!! ATTTTTTTCTCACTTTTATA+AGG - chr5_1:6338338-6338357 Msa0713870:intron 15.0%
!! ACAAATTGTATTGAAAATTT+GGG + chr5_1:6338617-6338636 None:intergenic 15.0%
!! TACAAATTGTATTGAAAATT+TGG + chr5_1:6338618-6338637 None:intergenic 15.0%
!!! TGAAAAATTGATTCAATGAA+AGG + chr5_1:6332493-6332512 None:intergenic 20.0%
!!! CTATTGATAATAATAACTTG+TGG - chr5_1:6333047-6333066 Msa0713870:intron 20.0%
!! AAATATGAAAATACAATCAC+AGG - chr5_1:6333499-6333518 Msa0713870:CDS 20.0%
!!! TTTTTTTGTGAAATATTGGT+AGG - chr5_1:6333562-6333581 Msa0713870:CDS 20.0%
!!! TTTTTTGTGAAATATTGGTA+GGG - chr5_1:6333563-6333582 Msa0713870:CDS 20.0%
!! AAAAAAATGTCCATTATGTT+TGG + chr5_1:6333680-6333699 None:intergenic 20.0%
!! TAAATATGACAAAACAGATA+AGG - chr5_1:6334107-6334126 Msa0713870:intron 20.0%
!!! TATTCTGTTTTTTTTACTCT+CGG + chr5_1:6334146-6334165 None:intergenic 20.0%
!! AAAAGAGATAAATGAAGAAA+AGG - chr5_1:6334188-6334207 Msa0713870:CDS 20.0%
!! TTGATCATAATAGGATATTA+TGG - chr5_1:6334703-6334722 Msa0713870:intron 20.0%
!! TACTTTCTTCCTTATTATTT+GGG + chr5_1:6334984-6335003 None:intergenic 20.0%
!!! CTTAAATTAACTTTTGTTGA+TGG + chr5_1:6335283-6335302 None:intergenic 20.0%
!! TCAACAAAAGTTAATTTAAG+CGG - chr5_1:6335283-6335302 Msa0713870:intron 20.0%
!!! AAAACTTTCAATTTTTAGTC+CGG + chr5_1:6335349-6335368 None:intergenic 20.0%
!!! AGTTTTTTCTGTTAGTTATT+TGG + chr5_1:6335565-6335584 None:intergenic 20.0%
!!! CGATTTTTTTATGTTATTTG+AGG - chr5_1:6335824-6335843 Msa0713870:intron 20.0%
!!! TTTTATGTTATTTGAGGATA+AGG - chr5_1:6335830-6335849 Msa0713870:intron 20.0%
!!! CCTTCATACAATTTTTAAAA+AGG + chr5_1:6336953-6336972 None:intergenic 20.0%
!!! CCTTTTTAAAAATTGTATGA+AGG - chr5_1:6336950-6336969 Msa0713870:intron 20.0%
!! ATACATAGAATAATGATTAC+TGG + chr5_1:6336977-6336996 None:intergenic 20.0%
!!! TCATAATCATTTTTTGTAAC+TGG + chr5_1:6337081-6337100 None:intergenic 20.0%
!! TTTGTACAATATGAAAAACT+GGG + chr5_1:6337514-6337533 None:intergenic 20.0%
!! ATTTGTACAATATGAAAAAC+TGG + chr5_1:6337515-6337534 None:intergenic 20.0%
!!! TCTACTTTTTTTTCTAAATC+AGG + chr5_1:6337761-6337780 None:intergenic 20.0%
!!! CACTCATTAAATTTTCATTA+TGG - chr5_1:6337867-6337886 Msa0713870:CDS 20.0%
!! TTACATGCTTATTTATTCTT+TGG - chr5_1:6338160-6338179 Msa0713870:intron 20.0%
!!! AATTTAAAGATTTTTCTGGA+TGG - chr5_1:6338582-6338601 Msa0713870:CDS 20.0%
! AGAGAAATCTTTGATCTATT+CGG + chr5_1:6332151-6332170 None:intergenic 25.0%
! AGTTGAAGATAACAATCTAT+GGG + chr5_1:6332268-6332287 None:intergenic 25.0%
! AAGTTGAAGATAACAATCTA+TGG + chr5_1:6332269-6332288 None:intergenic 25.0%
! TTGCAGAGTTTATGAAAATA+AGG - chr5_1:6332740-6332759 Msa0713870:CDS 25.0%
! TATTTGCTTCATTGTATGTT+TGG - chr5_1:6332906-6332925 Msa0713870:intron 25.0%
! TTATCAATAGAGTGCATATT+TGG + chr5_1:6333037-6333056 None:intergenic 25.0%
!!! ATCATTTTTGTGCATTCTTT+TGG - chr5_1:6333208-6333227 Msa0713870:intron 25.0%
!!! TTCATTTTTGTGCATTCTTT+TGG - chr5_1:6333238-6333257 Msa0713870:intron 25.0%
!! TACTATAGTCTAAACCATTT+TGG + chr5_1:6333397-6333416 None:intergenic 25.0%
!! TATCTCTCCTATTATGTTTT+GGG - chr5_1:6333418-6333437 Msa0713870:CDS 25.0%
!! ACAAACACAACAACTTTTTA+TGG + chr5_1:6333463-6333482 None:intergenic 25.0%
!! TTTTTGTGAAATATTGGTAG+GGG - chr5_1:6333564-6333583 Msa0713870:CDS 25.0%
! AATTAGTTAGTTAATTCCCT+TGG - chr5_1:6333594-6333613 Msa0713870:CDS 25.0%
!!! TAGTTGTTTTAACATTGATC+AGG - chr5_1:6333788-6333807 Msa0713870:CDS 25.0%
! TTAATCAATCGTAATAATGG+TGG - chr5_1:6333822-6333841 Msa0713870:CDS 25.0%
! GAGTAAAAAAAACAGAATAC+AGG - chr5_1:6334147-6334166 Msa0713870:intron 25.0%
!! TCTTCATTTATCTCTTTTCT+GGG + chr5_1:6334186-6334205 None:intergenic 25.0%
!! TTCTTCATTTATCTCTTTTC+TGG + chr5_1:6334187-6334206 None:intergenic 25.0%
! TTAAACTCAATGCTGTAATA+AGG + chr5_1:6334643-6334662 None:intergenic 25.0%
!! TACGTGTTTACATTTTTAAC+AGG - chr5_1:6334844-6334863 Msa0713870:CDS 25.0%
! CTACTTTCTTCCTTATTATT+TGG + chr5_1:6334985-6335004 None:intergenic 25.0%
! AATCAAAGTAACTAGAAAAG+TGG + chr5_1:6335011-6335030 None:intergenic 25.0%
!! AGTTACTTTGATTGTAATGA+AGG - chr5_1:6335018-6335037 Msa0713870:CDS 25.0%
! TGTAATGAAGGATTATACAT+AGG - chr5_1:6335030-6335049 Msa0713870:CDS 25.0%
! TAAAGCTTGAAAAACAGAAA+GGG + chr5_1:6335062-6335081 None:intergenic 25.0%
! TTAAAGCTTGAAAAACAGAA+AGG + chr5_1:6335063-6335082 None:intergenic 25.0%
! TACACTGTACTATTATAGTA+TGG - chr5_1:6335159-6335178 Msa0713870:intron 25.0%
! TTAGTTATTTGGTATAGAGT+CGG + chr5_1:6335554-6335573 None:intergenic 25.0%
!!! TTTTGTTCTTTGAGATTTCA+TGG - chr5_1:6335745-6335764 Msa0713870:intron 25.0%
!!! TTTGTTCTTTGAGATTTCAT+GGG - chr5_1:6335746-6335765 Msa0713870:intron 25.0%
!!! CATATATTCATTTAGTTTGC+TGG - chr5_1:6335894-6335913 Msa0713870:intron 25.0%
!!! CTGCTAATTTAATTTGTAGA+TGG - chr5_1:6336079-6336098 Msa0713870:intron 25.0%
! TAAACATCAAGACAAAAAAC+TGG - chr5_1:6336147-6336166 Msa0713870:intron 25.0%
! AATTTGAAAATTGACGATGA+AGG - chr5_1:6336372-6336391 Msa0713870:intron 25.0%
!!! TAGGTCAAAAAGAAGTATTT+AGG + chr5_1:6336890-6336909 None:intergenic 25.0%
! TTAATGAAGTTCTCAATTTC+AGG - chr5_1:6336996-6337015 Msa0713870:intron 25.0%
! CATAAAATTCCTGCATAAAA+TGG + chr5_1:6337346-6337365 None:intergenic 25.0%
!! AACTTCAAACATACAGTTTT+TGG - chr5_1:6337549-6337568 Msa0713870:intron 25.0%
!! CTAAATCAGGTCTAAATTTT+TGG + chr5_1:6337748-6337767 None:intergenic 25.0%
! AAAGATAACAGAATGTACAA+TGG + chr5_1:6337792-6337811 None:intergenic 25.0%
! TGCAAAATATTGTAATCCTA+AGG + chr5_1:6337923-6337942 None:intergenic 25.0%
! ATCCATTAACAATTATCAAC+TGG - chr5_1:6338111-6338130 Msa0713870:intron 25.0%
! TCCATTAACAATTATCAACT+GGG - chr5_1:6338112-6338131 Msa0713870:intron 25.0%
! AAATGCAAACCAAAGAATAA+GGG + chr5_1:6338378-6338397 None:intergenic 25.0%
!! GGTGAATTTAAAGATTTTTC+TGG - chr5_1:6338578-6338597 Msa0713870:CDS 25.0%
!! GTTCATATTGGTTAATTACA+TGG + chr5_1:6338860-6338879 None:intergenic 25.0%
AGATAACAATCTATGGGATT+GGG + chr5_1:6332262-6332281 None:intergenic 30.0%
AAGATAACAATCTATGGGAT+TGG + chr5_1:6332263-6332282 None:intergenic 30.0%
!!! CTGTTTTGGTTAAGAACATT+CGG + chr5_1:6332366-6332385 None:intergenic 30.0%
TGTTCTTAACCAAAACAGAA+TGG - chr5_1:6332368-6332387 Msa0713870:three_prime_UTR 30.0%
GTTCTTAACCAAAACAGAAT+GGG - chr5_1:6332369-6332388 Msa0713870:three_prime_UTR 30.0%
AAAAGGAAGACGTTTGAAAA+CGG + chr5_1:6332434-6332453 None:intergenic 30.0%
TTGATTCAATGAAAGGATGA+AGG + chr5_1:6332486-6332505 None:intergenic 30.0%
AGCTATAAGCTGCAAATAAT+CGG + chr5_1:6332628-6332647 None:intergenic 30.0%
GACATACAACTTATTCAGAT+TGG + chr5_1:6332867-6332886 None:intergenic 30.0%
! TCATTGTATGTTTGGAATCA+CGG - chr5_1:6332914-6332933 Msa0713870:intron 30.0%
!! ATAACTTGTGGTTTTCAACT+TGG - chr5_1:6333059-6333078 Msa0713870:intron 30.0%
!! TAACTTGTGGTTTTCAACTT+GGG - chr5_1:6333060-6333079 Msa0713870:intron 30.0%
GTATATGTAGTATTGCCTAT+TGG - chr5_1:6333371-6333390 Msa0713870:intron 30.0%
! GTATCTCTCCTATTATGTTT+TGG - chr5_1:6333417-6333436 Msa0713870:CDS 30.0%
AAGTTGTTGTGTTTGTCAAA+TGG - chr5_1:6333467-6333486 Msa0713870:CDS 30.0%
! AGAAATTAAAAGCATGCCAA+GGG + chr5_1:6333613-6333632 None:intergenic 30.0%
! TAGAAATTAAAAGCATGCCA+AGG + chr5_1:6333614-6333633 None:intergenic 30.0%
TGCGTGTTAATTCAATGTAT+AGG - chr5_1:6333713-6333732 Msa0713870:intron 30.0%
!!! TCATTCTTCAGGTTTTTTAG+GGG + chr5_1:6333751-6333770 None:intergenic 30.0%
!!! GTCATTCTTCAGGTTTTTTA+GGG + chr5_1:6333752-6333771 None:intergenic 30.0%
!!! AGTCATTCTTCAGGTTTTTT+AGG + chr5_1:6333753-6333772 None:intergenic 30.0%
AGAAAAGAAAGTCATTCTTC+AGG + chr5_1:6333762-6333781 None:intergenic 30.0%
GGGTGGCTATAATAAAAATA+TGG - chr5_1:6333935-6333954 Msa0713870:CDS 30.0%
GCTGCTAATAAAGATACTTA+TGG + chr5_1:6334043-6334062 None:intergenic 30.0%
AAAAAAACAGAATACAGGAC+AGG - chr5_1:6334152-6334171 Msa0713870:CDS 30.0%
AAAAAACAGAATACAGGACA+GGG - chr5_1:6334153-6334172 Msa0713870:CDS 30.0%
AAAGGAAATGACTAAGATAC+TGG - chr5_1:6334206-6334225 Msa0713870:CDS 30.0%
AAGGAAATGACTAAGATACT+GGG - chr5_1:6334207-6334226 Msa0713870:CDS 30.0%
!!! AAAGATATGCGGTTTTTTGT+TGG - chr5_1:6334391-6334410 Msa0713870:CDS 30.0%
!!! GTTTTTTGTTGGCATTTCAT+AGG - chr5_1:6334402-6334421 Msa0713870:CDS 30.0%
ATGAAATTAGACGTTACCTT+TGG - chr5_1:6334536-6334555 Msa0713870:intron 30.0%
TTTGACAAAATACCATGTGA+TGG + chr5_1:6334590-6334609 None:intergenic 30.0%
! ACAGCATTGAGTTTAATACA+TGG - chr5_1:6334647-6334666 Msa0713870:CDS 30.0%
AAGAATTTCGTTAGAAAGTG+AGG + chr5_1:6334752-6334771 None:intergenic 30.0%
AACACGTATTTGCATGATAA+GGG + chr5_1:6334832-6334851 None:intergenic 30.0%
AAACACGTATTTGCATGATA+AGG + chr5_1:6334833-6334852 None:intergenic 30.0%
!! GGTAACACATTTGTTTTCTT+TGG - chr5_1:6334905-6334924 Msa0713870:intron 30.0%
!! ACATTTGTTTTCTTTGGCTT+TGG - chr5_1:6334911-6334930 Msa0713870:intron 30.0%
GTGTACAATGATTTAAGGAT+TGG - chr5_1:6335118-6335137 Msa0713870:intron 30.0%
ACTGTACTATTATAGTATGG+AGG - chr5_1:6335162-6335181 Msa0713870:intron 30.0%
TTAATTTAAGCGGCATGTTT+GGG - chr5_1:6335293-6335312 Msa0713870:intron 30.0%
TAGAACAGTATTAGAATCCT+AGG + chr5_1:6335326-6335345 None:intergenic 30.0%
TTCTCTTTCAGCTTAACTAT+TGG - chr5_1:6335468-6335487 Msa0713870:intron 30.0%
TGAGCAACAGTTACATATAT+TGG + chr5_1:6335623-6335642 None:intergenic 30.0%
AATTAGCAGTGTTAACACTA+AGG + chr5_1:6336068-6336087 None:intergenic 30.0%
TATGTATGTTTGTGGGAAAT+AGG - chr5_1:6336112-6336131 Msa0713870:intron 30.0%
AACTGACCTGAATTGTTATA+AGG + chr5_1:6336211-6336230 None:intergenic 30.0%
TTATAACAATTCAGGTCAGT+TGG - chr5_1:6336210-6336229 Msa0713870:intron 30.0%
!! GTAGTTCTGAGTAAAGAAAA+CGG + chr5_1:6336503-6336522 None:intergenic 30.0%
AGCCTATAACATAAACATGT+CGG - chr5_1:6336542-6336561 Msa0713870:intron 30.0%
AAACAAATGCTTAAAGAGCT+TGG - chr5_1:6336573-6336592 Msa0713870:intron 30.0%
TATGCATGAGATGTATCAAT+AGG + chr5_1:6336913-6336932 None:intergenic 30.0%
ATGATGTAGAAGTAAAAGAC+CGG + chr5_1:6337053-6337072 None:intergenic 30.0%
TGTGAACGTGGATATTATAA+CGG - chr5_1:6337228-6337247 Msa0713870:intron 30.0%
!!! TTGCTTTTCATAGAAGCATT+AGG - chr5_1:6337253-6337272 Msa0713870:intron 30.0%
! TCTTATAGTCCATTTTATGC+AGG - chr5_1:6337334-6337353 Msa0713870:intron 30.0%
! TGCAGGAATTTTATGATACA+AGG - chr5_1:6337351-6337370 Msa0713870:intron 30.0%
! AGGAATTTTATGATACAAGG+TGG - chr5_1:6337354-6337373 Msa0713870:intron 30.0%
GAGTTAAGTTCATCCTTAAA+AGG + chr5_1:6337426-6337445 None:intergenic 30.0%
!! TTCAAACATACAGTTTTTGG+AGG - chr5_1:6337552-6337571 Msa0713870:intron 30.0%
! ACATTCTGTTATCTTTTGCA+CGG - chr5_1:6337796-6337815 Msa0713870:intron 30.0%
AATTTAATGAGTGAAACCCA+AGG + chr5_1:6337860-6337879 None:intergenic 30.0%
! ATTTGTGAACATTGAGGTTT+TGG - chr5_1:6337948-6337967 Msa0713870:intron 30.0%
TATTTAACAACAATGCTTGC+TGG - chr5_1:6338066-6338085 Msa0713870:intron 30.0%
ATTTAACAACAATGCTTGCT+GGG - chr5_1:6338067-6338086 Msa0713870:intron 30.0%
!! TTATTTATTCTTTGGCTTGC+AGG - chr5_1:6338168-6338187 Msa0713870:intron 30.0%
GAAATGCAAACCAAAGAATA+AGG + chr5_1:6338379-6338398 None:intergenic 30.0%
!! TATTCTTTGGTTTGCATTTC+AGG - chr5_1:6338379-6338398 Msa0713870:intron 30.0%
! AATAGAATCATTTTGTCTCG+AGG - chr5_1:6338762-6338781 Msa0713870:five_prime_UTR 30.0%
GGAAAATTTAAATATCTGGC+AGG + chr5_1:6338836-6338855 None:intergenic 30.0%
TGGCGGAAAATTTAAATATC+TGG + chr5_1:6338840-6338859 None:intergenic 30.0%
! CATATTGGTTAATTACATGG+CGG + chr5_1:6338857-6338876 None:intergenic 30.0%
ATCTTTGATCTATTCGGCTT+CGG + chr5_1:6332145-6332164 None:intergenic 35.0%
!!! GTTTTGGTTTATCACTTCTG+TGG + chr5_1:6332310-6332329 None:intergenic 35.0%
ATAAACCAAAACCCTAGCAA+TGG - chr5_1:6332318-6332337 Msa0713870:three_prime_UTR 35.0%
TAAACCAAAACCCTAGCAAT+GGG - chr5_1:6332319-6332338 Msa0713870:three_prime_UTR 35.0%
GTACAAACTGGAAACTCAAA+CGG + chr5_1:6332561-6332580 None:intergenic 35.0%
AGAGTGCATATTTGGATTGA+CGG + chr5_1:6333029-6333048 None:intergenic 35.0%
TATGGTAAACATCCTGTTAC+TGG - chr5_1:6333113-6333132 Msa0713870:intron 35.0%
! ATGAGATCTTGTTGCTTCAA+GGG + chr5_1:6333143-6333162 None:intergenic 35.0%
! AATGAGATCTTGTTGCTTCA+AGG + chr5_1:6333144-6333163 None:intergenic 35.0%
GAGTTCTTGTGAAAAGTTAG+TGG + chr5_1:6333167-6333186 None:intergenic 35.0%
! ACTTTTCACAAGAACTCAGA+AGG - chr5_1:6333170-6333189 Msa0713870:intron 35.0%
CATGATTGAGTTCATTGCTT+AGG - chr5_1:6333281-6333300 Msa0713870:intron 35.0%
!! TCTAAACCATTTTGGCCAAT+AGG + chr5_1:6333389-6333408 None:intergenic 35.0%
CCATCATCCCAAAACATAAT+AGG + chr5_1:6333428-6333447 None:intergenic 35.0%
!!! CCTATTATGTTTTGGGATGA+TGG - chr5_1:6333425-6333444 Msa0713870:CDS 35.0%
CCATTATGTTTGGCAGAATA+AGG + chr5_1:6333670-6333689 None:intergenic 35.0%
CCTTATTCTGCCAAACATAA+TGG - chr5_1:6333667-6333686 Msa0713870:intron 35.0%
!!! CATTCTTCAGGTTTTTTAGG+GGG + chr5_1:6333750-6333769 None:intergenic 35.0%
!! ATCGTAATAATGGTGGATGA+TGG - chr5_1:6333829-6333848 Msa0713870:CDS 35.0%
!! TCGTAATAATGGTGGATGAT+GGG - chr5_1:6333830-6333849 Msa0713870:CDS 35.0%
AAGATACTGGGCAAATAATC+AGG - chr5_1:6334219-6334238 Msa0713870:CDS 35.0%
AGATACTGGGCAAATAATCA+GGG - chr5_1:6334220-6334239 Msa0713870:CDS 35.0%
ATTCTATCATCTCATTCGCA+TGG + chr5_1:6334286-6334305 None:intergenic 35.0%
CGAATGAGATGATAGAATGT+GGG - chr5_1:6334288-6334307 Msa0713870:CDS 35.0%
CTTGAACCTTTGATCATGAT+CGG - chr5_1:6334321-6334340 Msa0713870:CDS 35.0%
AGAGTGAGAACAAAGATATG+CGG - chr5_1:6334380-6334399 Msa0713870:CDS 35.0%
GTAACGTCTAATTTCATAGC+AGG + chr5_1:6334533-6334552 None:intergenic 35.0%
AAAATACCATGTGATGGCTA+TGG + chr5_1:6334584-6334603 None:intergenic 35.0%
AACTCAATGCTGTAATAAGG+TGG + chr5_1:6334640-6334659 None:intergenic 35.0%
TGGAAGACGTTGATCATAAT+AGG - chr5_1:6334694-6334713 Msa0713870:intron 35.0%
!! ATGGTGTTGTTTGTTCTATG+TGG - chr5_1:6334722-6334741 Msa0713870:intron 35.0%
ACACGTATTTGCATGATAAG+GGG + chr5_1:6334831-6334850 None:intergenic 35.0%
! ACTGCATAAGCTTTGTCAAA+TGG - chr5_1:6334882-6334901 Msa0713870:intron 35.0%
! CTGCATAAGCTTTGTCAAAT+GGG - chr5_1:6334883-6334902 Msa0713870:intron 35.0%
! TGCATAAGCTTTGTCAAATG+GGG - chr5_1:6334884-6334903 Msa0713870:intron 35.0%
!!! TTTGTTTTCTTTGGCTTTGG+TGG - chr5_1:6334914-6334933 Msa0713870:intron 35.0%
!! TTTGGTGGATTAGAATGTGA+GGG - chr5_1:6334929-6334948 Msa0713870:intron 35.0%
ATTAGAATGTGAGGGTCTTT+AGG - chr5_1:6334937-6334956 Msa0713870:intron 35.0%
TGTCACACACCCAAATAATA+AGG - chr5_1:6334972-6334991 Msa0713870:intron 35.0%
CCTTAAATCATTGTACACCA+TGG + chr5_1:6335116-6335135 None:intergenic 35.0%
CCATGGTGTACAATGATTTA+AGG - chr5_1:6335113-6335132 Msa0713870:intron 35.0%
AAGATTCTGTACCACTGTAA+TGG - chr5_1:6335195-6335214 Msa0713870:intron 35.0%
AAATCCCAGACTTAAGCTAT+AGG + chr5_1:6335226-6335245 None:intergenic 35.0%
! TTAAGTCTGGGATTTGTTTC+AGG - chr5_1:6335231-6335250 Msa0713870:intron 35.0%
GTTAATTTAAGCGGCATGTT+TGG - chr5_1:6335292-6335311 Msa0713870:intron 35.0%
GGATTCTAATACTGTTCTAC+CGG - chr5_1:6335327-6335346 Msa0713870:intron 35.0%
CTAACGCGAAAGAAACAAAA+TGG - chr5_1:6335440-6335459 Msa0713870:intron 35.0%
TATGCTTAGTTGACCAGTTT+CGG + chr5_1:6335715-6335734 None:intergenic 35.0%
! TGTTATTTGAGGATAAGGTG+TGG - chr5_1:6335835-6335854 Msa0713870:intron 35.0%
! GGGATGCATTTATGATTTTC+TGG - chr5_1:6335860-6335879 Msa0713870:intron 35.0%
! GTGAAAACTTTGTTTAGCAC+TGG + chr5_1:6335973-6335992 None:intergenic 35.0%
CATCAAGACAAAAAACTGGA+AGG - chr5_1:6336151-6336170 Msa0713870:intron 35.0%
GGATGACCTTATAACAATTC+AGG - chr5_1:6336202-6336221 Msa0713870:intron 35.0%
CACATACACAAACATCAACA+TGG + chr5_1:6336288-6336307 None:intergenic 35.0%
AGAAAATATGGATGAGTTGC+AGG + chr5_1:6336408-6336427 None:intergenic 35.0%
GATCAGTAGCTCAGAAAATA+TGG + chr5_1:6336420-6336439 None:intergenic 35.0%
GACATGTTTATGTTATAGGC+TGG + chr5_1:6336543-6336562 None:intergenic 35.0%
GCCTATAACATAAACATGTC+GGG - chr5_1:6336543-6336562 Msa0713870:intron 35.0%
TCCCGACATGTTTATGTTAT+AGG + chr5_1:6336547-6336566 None:intergenic 35.0%
! TGGAAAGGCACAAAAAGAAA+GGG - chr5_1:6336638-6336657 Msa0713870:intron 35.0%
!! AGCAGTTTTATCACTTGATG+AGG + chr5_1:6336805-6336824 None:intergenic 35.0%
CATGAGATGTATCAATAGGT+AGG + chr5_1:6336909-6336928 None:intergenic 35.0%
GTTAAAAGTCGTTACACTAC+TGG - chr5_1:6337018-6337037 Msa0713870:intron 35.0%
TGATGTAGAAGTAAAAGACC+GGG + chr5_1:6337052-6337071 None:intergenic 35.0%
TGAGAAGAATCCAAAGAAGA+AGG - chr5_1:6337113-6337132 Msa0713870:intron 35.0%
GAGAAGAATCCAAAGAAGAA+GGG - chr5_1:6337114-6337133 Msa0713870:intron 35.0%
TGTACATATCCCTTCTTCTT+TGG + chr5_1:6337126-6337145 None:intergenic 35.0%
GTCACTCTTGATTTACTACA+AGG + chr5_1:6337304-6337323 None:intergenic 35.0%
TAGAGGTGGTGAATCAATTT+GGG - chr5_1:6337395-6337414 Msa0713870:intron 35.0%
! AATTTGGGGAAAGCCTTTTA+AGG - chr5_1:6337410-6337429 Msa0713870:intron 35.0%
ATTGACTACACTAGCAACAA+TGG - chr5_1:6337587-6337606 Msa0713870:intron 35.0%
TACACTAGCAACAATGGAAA+AGG - chr5_1:6337593-6337612 Msa0713870:intron 35.0%
ATTAATTTACGACTCACCAG+AGG + chr5_1:6337642-6337661 None:intergenic 35.0%
AAACCAGAAAAAGAGAGAGT+GGG + chr5_1:6337691-6337710 None:intergenic 35.0%
AAAACCAGAAAAAGAGAGAG+TGG + chr5_1:6337692-6337711 None:intergenic 35.0%
AATATTGTAATCCTAAGGCC+TGG + chr5_1:6337918-6337937 None:intergenic 35.0%
! ACTGTCATTTGTGAACATTG+AGG - chr5_1:6337942-6337961 Msa0713870:intron 35.0%
!! GCCCAGTTGATAATTGTTAA+TGG + chr5_1:6338116-6338135 None:intergenic 35.0%
GTGAACTAACCCTTATTCTT+TGG - chr5_1:6338366-6338385 Msa0713870:intron 35.0%
TTGGCAAATACTTGAAAGCT+AGG - chr5_1:6338477-6338496 Msa0713870:intron 35.0%
! TTTTCTCTTCTTTCCCACAA+CGG + chr5_1:6338546-6338565 None:intergenic 35.0%
AAATAACAAGACGACCACAA+CGG + chr5_1:6338801-6338820 None:intergenic 35.0%
TTGGTTTATCACTTCTGTGG+TGG + chr5_1:6332307-6332326 None:intergenic 40.0%
AAACCAAAACCCTAGCAATG+GGG - chr5_1:6332320-6332339 Msa0713870:three_prime_UTR 40.0%
! TTCAGTTGCCCATTCTGTTT+TGG + chr5_1:6332380-6332399 None:intergenic 40.0%
AAACAGAATGGGCAACTGAA+TGG - chr5_1:6332380-6332399 Msa0713870:three_prime_UTR 40.0%
AACAGAATGGGCAACTGAAT+GGG - chr5_1:6332381-6332400 Msa0713870:three_prime_UTR 40.0%
! GAAAACGGTGCGATTTTCTT+TGG + chr5_1:6332419-6332438 None:intergenic 40.0%
TTTCCAGTTTGTACACCTGA+TGG - chr5_1:6332567-6332586 Msa0713870:CDS 40.0%
TTGGAATCACGGTGAGTATA+AGG - chr5_1:6332925-6332944 Msa0713870:intron 40.0%
GTATTGCCTATTGGCCAAAA+TGG - chr5_1:6333380-6333399 Msa0713870:intron 40.0%
TCATTGAATGCAAAAGCTCG+AGG - chr5_1:6333643-6333662 Msa0713870:CDS 40.0%
TATGTTGCTACGGCAGATTT+AGG + chr5_1:6333868-6333887 None:intergenic 40.0%
TGTAGCCTATGATGAAAGCA+GGG - chr5_1:6333915-6333934 Msa0713870:CDS 40.0%
GCGAATGAGATGATAGAATG+TGG - chr5_1:6334287-6334306 Msa0713870:CDS 40.0%
ATGTCTCCGATCATGATCAA+AGG + chr5_1:6334330-6334349 None:intergenic 40.0%
TTTGATCATGATCGGAGACA+TGG - chr5_1:6334329-6334348 Msa0713870:CDS 40.0%
ATTTAGCGACTCTTTCCACT+AGG - chr5_1:6334490-6334509 Msa0713870:CDS 40.0%
TGCAGCACATTATACTACCT+TGG - chr5_1:6334612-6334631 Msa0713870:intron 40.0%
!! GTGCAGTGAATTTTAGCACA+TGG - chr5_1:6334674-6334693 Msa0713870:CDS 40.0%
!! CTTTGGTGGATTAGAATGTG+AGG - chr5_1:6334928-6334947 Msa0713870:intron 40.0%
TTGTACACCATGGTGATTCA+CGG + chr5_1:6335106-6335125 None:intergenic 40.0%
!! GCGTTAGCTTGTAAGAATTC+AGG + chr5_1:6335427-6335446 None:intergenic 40.0%
TAGTTCACATACCTAGCGTT+GGG - chr5_1:6335495-6335514 Msa0713870:intron 40.0%
ATTTGAGGATAAGGTGTGGA+TGG - chr5_1:6335839-6335858 Msa0713870:intron 40.0%
TTTGAGGATAAGGTGTGGAT+GGG - chr5_1:6335840-6335859 Msa0713870:intron 40.0%
TCCTGCAGAGTAACAAAGAA+AGG + chr5_1:6335938-6335957 None:intergenic 40.0%
CACTGAATTTACCCACATTG+TGG - chr5_1:6335990-6336009 Msa0713870:intron 40.0%
!!! AGTTTTGACTGCCACAATGT+GGG + chr5_1:6336004-6336023 None:intergenic 40.0%
!!! TAGTTTTGACTGCCACAATG+TGG + chr5_1:6336005-6336024 None:intergenic 40.0%
ATTGTGGCAGTCAAAACTAC+TGG - chr5_1:6336006-6336025 Msa0713870:intron 40.0%
TGGAAATGTCTTCTGCTATG+AGG - chr5_1:6336026-6336045 Msa0713870:intron 40.0%
!! GCTATGAGGTTTGTTTTTCC+AGG - chr5_1:6336040-6336059 Msa0713870:intron 40.0%
AGTGTTAACACTAAGGATCC+TGG + chr5_1:6336061-6336080 None:intergenic 40.0%
CAAAATCCAGAAGAACCTTC+TGG + chr5_1:6336338-6336357 None:intergenic 40.0%
GAAAGGAAACTGCATTGCAT+GGG - chr5_1:6336607-6336626 Msa0713870:intron 40.0%
AAAGGAAACTGCATTGCATG+GGG - chr5_1:6336608-6336627 Msa0713870:intron 40.0%
! GTGGAAAGGCACAAAAAGAA+AGG - chr5_1:6336637-6336656 Msa0713870:intron 40.0%
TTGTGATCGTGCAGCTAAAA+TGG + chr5_1:6336679-6336698 None:intergenic 40.0%
GTACAACTGCATACAACACA+CGG - chr5_1:6337141-6337160 Msa0713870:intron 40.0%
CTACAAGGACAAAGACACAA+AGG + chr5_1:6337289-6337308 None:intergenic 40.0%
GTAGAGGTGGTGAATCAATT+TGG - chr5_1:6337394-6337413 Msa0713870:intron 40.0%
AGAGGTGGTGAATCAATTTG+GGG - chr5_1:6337396-6337415 Msa0713870:intron 40.0%
AACTCCAAATTAGTCCACTC+TGG - chr5_1:6337441-6337460 Msa0713870:intron 40.0%
! CAAATTAGTCCACTCTGGAA+GGG - chr5_1:6337446-6337465 Msa0713870:intron 40.0%
! AAATTAGTCCACTCTGGAAG+GGG - chr5_1:6337447-6337466 Msa0713870:intron 40.0%
ACTGGGAACCATTAGTATGT+GGG + chr5_1:6337497-6337516 None:intergenic 40.0%
AACTGGGAACCATTAGTATG+TGG + chr5_1:6337498-6337517 None:intergenic 40.0%
AACCAGAAAAAGAGAGAGTG+GGG + chr5_1:6337690-6337709 None:intergenic 40.0%
TTGGACTATCTTGAGTACAG+TGG - chr5_1:6337967-6337986 Msa0713870:intron 40.0%
! CATTGTTTGTGTTGACAGCA+TGG + chr5_1:6338138-6338157 None:intergenic 40.0%
CATGCTGTCAACACAAACAA+TGG - chr5_1:6338136-6338155 Msa0713870:intron 40.0%
!! TTTATTCTTTGGCTTGCAGG+AGG - chr5_1:6338171-6338190 Msa0713870:intron 40.0%
CAGGAGGAAATCAAGATAAC+AGG - chr5_1:6338187-6338206 Msa0713870:intron 40.0%
!! TTGGTTTGCATTTCAGGACA+AGG - chr5_1:6338385-6338404 Msa0713870:intron 40.0%
TTTGCATTTCAGGACAAGGT+TGG - chr5_1:6338389-6338408 Msa0713870:intron 40.0%
AAGAGAAAAGCAGTTGTCAG+TGG - chr5_1:6338557-6338576 Msa0713870:intron 40.0%
! GATTTTCAGCGGCGTGTTAT+TGG + chr5_1:6332225-6332244 None:intergenic 45.0%
CAATCTATGGGATTGGGTTC+CGG + chr5_1:6332256-6332275 None:intergenic 45.0%
TTGCTTCTTCCCCATTGCTA+GGG + chr5_1:6332332-6332351 None:intergenic 45.0%
ACAGAATGGGCAACTGAATG+GGG - chr5_1:6332382-6332401 Msa0713870:three_prime_UTR 45.0%
! GTGGTTTTCAACTTGGGTTC+AGG - chr5_1:6333066-6333085 Msa0713870:intron 45.0%
! TGCAGTTGTGAGTTGAGCTT+CGG - chr5_1:6333304-6333323 Msa0713870:intron 45.0%
TTGAGCTTCGGATTGACGTA+GGG - chr5_1:6333316-6333335 Msa0713870:intron 45.0%
TCGAGTGTAGTGTACTTGGT+AGG - chr5_1:6333522-6333541 Msa0713870:CDS 45.0%
!!! CTTCAGGTTTTTTAGGGGGA+GGG + chr5_1:6333746-6333765 None:intergenic 45.0%
!!! TCTTCAGGTTTTTTAGGGGG+AGG + chr5_1:6333747-6333766 None:intergenic 45.0%
GCCATGTCAGTATGTTGCTA+CGG + chr5_1:6333878-6333897 None:intergenic 45.0%
CTGTAGCCTATGATGAAAGC+AGG - chr5_1:6333914-6333933 Msa0713870:CDS 45.0%
AACCACTGAACAACGGGTAA+GGG - chr5_1:6334068-6334087 Msa0713870:intron 45.0%
TCATTCGCATGGATCGTAAC+TGG + chr5_1:6334275-6334294 None:intergenic 45.0%
TAACAGTTCAGCAAGCCTAG+TGG + chr5_1:6334508-6334527 None:intergenic 45.0%
GCTGTAATAAGGTGGTACCA+AGG + chr5_1:6334632-6334651 None:intergenic 45.0%
TATAGGCAGCACCATTACAG+TGG + chr5_1:6335209-6335228 None:intergenic 45.0%
TGCTGCCTATAGCTTAAGTC+TGG - chr5_1:6335218-6335237 Msa0713870:intron 45.0%
GCTGCCTATAGCTTAAGTCT+GGG - chr5_1:6335219-6335238 Msa0713870:intron 45.0%
CATGTTTGGGAGAACTTCCT+AGG - chr5_1:6335306-6335325 Msa0713870:intron 45.0%
CTAGTTCACATACCTAGCGT+TGG - chr5_1:6335494-6335513 Msa0713870:intron 45.0%
! CTAGCGTTGGGAATTCTTGA+GGG - chr5_1:6335507-6335526 Msa0713870:intron 45.0%
CTTGAGGGAGGGTTTGTATA+TGG - chr5_1:6335522-6335541 Msa0713870:intron 45.0%
GCTGAGATATTCTCCGAAAC+TGG - chr5_1:6335699-6335718 Msa0713870:intron 45.0%
! GCTGGCTGCTTTGTATTGAA+TGG - chr5_1:6335912-6335931 Msa0713870:intron 45.0%
GCCTTTCTTTGTTACTCTGC+AGG - chr5_1:6335934-6335953 Msa0713870:intron 45.0%
ATCCCTAGTAAATGCCTCGT+CGG + chr5_1:6336186-6336205 None:intergenic 45.0%
TCCTAATGCACTTGACCAGA+AGG - chr5_1:6336320-6336339 Msa0713870:intron 45.0%
ACCTTCTGGTCAAGTGCATT+AGG + chr5_1:6336324-6336343 None:intergenic 45.0%
ACTTGACCAGAAGGTTCTTC+TGG - chr5_1:6336329-6336348 Msa0713870:intron 45.0%
AAAGAGCTTGGAACTGAGCA+AGG - chr5_1:6336585-6336604 Msa0713870:intron 45.0%
GGAAAGGAAACTGCATTGCA+TGG - chr5_1:6336606-6336625 Msa0713870:intron 45.0%
AAGGAAACTGCATTGCATGG+GGG - chr5_1:6336609-6336628 Msa0713870:intron 45.0%
GAAGATTCCAAATCGACCGA+TGG - chr5_1:6336705-6336724 Msa0713870:intron 45.0%
TCTACAATACTGAGTGCCTG+AGG + chr5_1:6336735-6336754 None:intergenic 45.0%
TGCCAGAATAGCTATGCATG+TGG - chr5_1:6336824-6336843 Msa0713870:intron 45.0%
AGCCACATGCATAGCTATTC+TGG + chr5_1:6336829-6336848 None:intergenic 45.0%
AGAATAGCTATGCATGTGGC+TGG - chr5_1:6336828-6336847 Msa0713870:intron 45.0%
CTCACCATCTTTGCATTCAC+CGG + chr5_1:6336864-6336883 None:intergenic 45.0%
CAAGGACAAAGACACAAAGG+TGG + chr5_1:6337286-6337305 None:intergenic 45.0%
!! CCTTCCAGAGTGGACTAATT+TGG + chr5_1:6337448-6337467 None:intergenic 45.0%
CCAAATTAGTCCACTCTGGA+AGG - chr5_1:6337445-6337464 Msa0713870:intron 45.0%
GTAGTTAGCATGGCAAACAG+TGG - chr5_1:6337471-6337490 Msa0713870:intron 45.0%
AACAGTGGCCCACATACTAA+TGG - chr5_1:6337486-6337505 Msa0713870:intron 45.0%
!! ACAGTTTTTGGAGGCGTAGT+TGG - chr5_1:6337561-6337580 Msa0713870:intron 45.0%
ATTTACGACTCACCAGAGGT+CGG + chr5_1:6337638-6337657 None:intergenic 45.0%
ACCAGAAAAAGAGAGAGTGG+GGG + chr5_1:6337689-6337708 None:intergenic 45.0%
TACCTTTGCATCTGTCTAGC+TGG - chr5_1:6337828-6337847 Msa0713870:intron 45.0%
AACCAGCTAGACAGATGCAA+AGG + chr5_1:6337833-6337852 None:intergenic 45.0%
TTGCATCTGTCTAGCTGGTT+TGG - chr5_1:6337833-6337852 Msa0713870:intron 45.0%
TAATCCTAAGGCCTGGAACA+GGG + chr5_1:6337911-6337930 None:intergenic 45.0%
GGCTCATGGTATAGTAATCC+TGG - chr5_1:6338410-6338429 Msa0713870:intron 45.0%
TGGTATAGTAATCCTGGAGC+TGG - chr5_1:6338416-6338435 Msa0713870:intron 45.0%
! ACATCTGAATCTGGAGGTAC+AGG - chr5_1:6338440-6338459 Msa0713870:CDS 45.0%
CCACCCAAAAAACCTCCACA+CGG - chr5_1:6332176-6332195 Msa0713870:three_prime_UTR 50.0%
! CTTCCCCATTGCTAGGGTTT+TGG + chr5_1:6332326-6332345 None:intergenic 50.0%
GTTGCTTCTTCCCCATTGCT+AGG + chr5_1:6332333-6332352 None:intergenic 50.0%
ACGCACGCGCAGCAATAAAA+AGG + chr5_1:6332451-6332470 None:intergenic 50.0%
CTGCCATCAGGTGTACAAAC+TGG + chr5_1:6332573-6332592 None:intergenic 50.0%
TTCAAGGGAGCTCCAGTAAC+AGG + chr5_1:6333128-6333147 None:intergenic 50.0%
GTTGAGCTTCGGATTGACGT+AGG - chr5_1:6333315-6333334 Msa0713870:intron 50.0%
TGAGCTTCGGATTGACGTAG+GGG - chr5_1:6333317-6333336 Msa0713870:intron 50.0%
CAGGTCGAGTGTAGTGTACT+TGG - chr5_1:6333518-6333537 Msa0713870:CDS 50.0%
GCCGTAGCAACATACTGACA+TGG - chr5_1:6333874-6333893 Msa0713870:CDS 50.0%
AGCCTATGATGAAAGCAGGG+TGG - chr5_1:6333918-6333937 Msa0713870:CDS 50.0%
AGCCACCCTGCTTTCATCAT+AGG + chr5_1:6333923-6333942 None:intergenic 50.0%
GCCCTTGAACCACTGAACAA+CGG - chr5_1:6334061-6334080 Msa0713870:intron 50.0%
CCCGTTGTTCAGTGGTTCAA+GGG + chr5_1:6334065-6334084 None:intergenic 50.0%
CCCTTGAACCACTGAACAAC+GGG - chr5_1:6334062-6334081 Msa0713870:intron 50.0%
ACCCGTTGTTCAGTGGTTCA+AGG + chr5_1:6334066-6334085 None:intergenic 50.0%
GAACCACTGAACAACGGGTA+AGG - chr5_1:6334067-6334086 Msa0713870:intron 50.0%
ATCCCTTACCCGTTGTTCAG+TGG + chr5_1:6334073-6334092 None:intergenic 50.0%
CGGAGACATGGAAATGAGAG+TGG - chr5_1:6334341-6334360 Msa0713870:CDS 50.0%
ATGTGATGGCTATGGCCTGA+CGG + chr5_1:6334576-6334595 None:intergenic 50.0%
TGTCTCTCCGTGAATCACCA+TGG - chr5_1:6335096-6335115 Msa0713870:intron 50.0%
CCTCAAGAATTCCCAACGCT+AGG + chr5_1:6335509-6335528 None:intergenic 50.0%
! CCTAGCGTTGGGAATTCTTG+AGG - chr5_1:6335506-6335525 Msa0713870:intron 50.0%
CGTTGGGAATTCTTGAGGGA+GGG - chr5_1:6335511-6335530 Msa0713870:intron 50.0%
TAGTAAATGCCTCGTCGGTG+AGG + chr5_1:6336181-6336200 None:intergenic 50.0%
! TCACCGACGAGGCATTTACT+AGG - chr5_1:6336180-6336199 Msa0713870:intron 50.0%
! CACCGACGAGGCATTTACTA+GGG - chr5_1:6336181-6336200 Msa0713870:intron 50.0%
GCTTGGAACTGAGCAAGGAA+AGG - chr5_1:6336590-6336609 Msa0713870:intron 50.0%
TAAAATGGCAGCGAGTGCAG+CGG + chr5_1:6336664-6336683 None:intergenic 50.0%
TATGCATGTGGCTGGTGACA+GGG - chr5_1:6336836-6336855 Msa0713870:intron 50.0%
ATGAAGTTCTCGCATGCCCT+GGG + chr5_1:6337201-6337220 None:intergenic 50.0%
TTCATCACGCTCTGTGAACG+TGG - chr5_1:6337216-6337235 Msa0713870:intron 50.0%
ATACAAGGTGGCGATCCTAC+TGG - chr5_1:6337366-6337385 Msa0713870:intron 50.0%
!! GATCCTACTGGTACTGGTAG+AGG - chr5_1:6337378-6337397 Msa0713870:intron 50.0%
TAACTACACCCCTTCCAGAG+TGG + chr5_1:6337458-6337477 None:intergenic 50.0%
! TGGAAGGGGTGTAGTTAGCA+TGG - chr5_1:6337461-6337480 Msa0713870:intron 50.0%
!! GTTTTTGGAGGCGTAGTTGG+TGG - chr5_1:6337564-6337583 Msa0713870:intron 50.0%
! ACCCCCACTCTCTCTTTTTC+TGG - chr5_1:6337685-6337704 Msa0713870:intron 50.0%
!! TGTCTAGCTGGTTTGGACCT+TGG - chr5_1:6337840-6337859 Msa0713870:CDS 50.0%
!! GTCTAGCTGGTTTGGACCTT+GGG - chr5_1:6337841-6337860 Msa0713870:CDS 50.0%
AGTCTGCATATCCCTGTTCC+AGG - chr5_1:6337897-6337916 Msa0713870:CDS 50.0%
ATATCCCTGTTCCAGGCCTT+AGG - chr5_1:6337904-6337923 Msa0713870:CDS 50.0%
GTAATCCTAAGGCCTGGAAC+AGG + chr5_1:6337912-6337931 None:intergenic 50.0%
CTCTTCTTCCTCATCTGGCT+CGG + chr5_1:6338239-6338258 None:intergenic 50.0%
GCTTGCTCTTCTTCCTCATC+TGG + chr5_1:6338244-6338263 None:intergenic 50.0%
! TTCAGGACAAGGTTGGCTCA+TGG - chr5_1:6338396-6338415 Msa0713870:intron 50.0%
GATTCAGATGTTCCAGCTCC+AGG + chr5_1:6338431-6338450 None:intergenic 50.0%
GGAGCTGGAACATCTGAATC+TGG - chr5_1:6338431-6338450 Msa0713870:CDS 50.0%
GCTGGAACATCTGAATCTGG+AGG - chr5_1:6338434-6338453 Msa0713870:CDS 50.0%
! GAATCTGGAGGTACAGGTGT+TGG - chr5_1:6338446-6338465 Msa0713870:CDS 50.0%
GAAAGCTAGGAATGCTCCAC+CGG - chr5_1:6338490-6338509 Msa0713870:intron 50.0%
GTTGCACTCATGTTCCGTTG+TGG - chr5_1:6338784-6338803 Msa0713870:five_prime_UTR 50.0%
!!! CCGTGTGGAGGTTTTTTGGG+TGG + chr5_1:6332179-6332198 None:intergenic 55.0%
!!! CCGCCGTGTGGAGGTTTTTT+GGG + chr5_1:6332182-6332201 None:intergenic 55.0%
CCCAAAAAACCTCCACACGG+CGG - chr5_1:6332179-6332198 Msa0713870:three_prime_UTR 55.0%
!!! ACCGCCGTGTGGAGGTTTTT+TGG + chr5_1:6332183-6332202 None:intergenic 55.0%
!! GTTTGATTTGCACCGCCGTG+TGG + chr5_1:6332194-6332213 None:intergenic 55.0%
AACACGCCGCTGAAAATCGC+CGG - chr5_1:6332227-6332246 Msa0713870:three_prime_UTR 55.0%
! CGGTTTCCGGCGATTTTCAG+CGG + chr5_1:6332236-6332255 None:intergenic 55.0%
CGCTGAAAATCGCCGGAAAC+CGG - chr5_1:6332234-6332253 Msa0713870:three_prime_UTR 55.0%
TGGGATTGGGTTCCGGTTTC+CGG + chr5_1:6332249-6332268 None:intergenic 55.0%
GAATGGGCAACTGAATGGGG+AGG - chr5_1:6332385-6332404 Msa0713870:three_prime_UTR 55.0%
ACATCGAAGACGCTGCCATC+AGG + chr5_1:6332585-6332604 None:intergenic 55.0%
ATGGCCTGACGGCTTTCACA+CGG + chr5_1:6334565-6334584 None:intergenic 55.0%
GTCAGGCCATAGCCATCACA+TGG - chr5_1:6334575-6334594 Msa0713870:intron 55.0%
GCGTTGGGAATTCTTGAGGG+AGG - chr5_1:6335510-6335529 Msa0713870:intron 55.0%
GAAACTGCATTGCATGGGGG+AGG - chr5_1:6336612-6336631 Msa0713870:intron 55.0%
AGGAGCTCCATCGGTCGATT+TGG + chr5_1:6336715-6336734 None:intergenic 55.0%
GCTGCATCTGCTGCAGTACA+TGG - chr5_1:6336756-6336775 Msa0713870:intron 55.0%
CTATGCATGTGGCTGGTGAC+AGG - chr5_1:6336835-6336854 Msa0713870:intron 55.0%
!! GGCACCGGTGAATGCAAAGA+TGG - chr5_1:6336857-6336876 Msa0713870:intron 55.0%
TGCACTGTGATATAGCGCCC+AGG - chr5_1:6337181-6337200 Msa0713870:intron 55.0%
GCACTGTGATATAGCGCCCA+GGG - chr5_1:6337182-6337201 Msa0713870:intron 55.0%
GATGAAGTTCTCGCATGCCC+TGG + chr5_1:6337202-6337221 None:intergenic 55.0%
CCACCTCTACCAGTACCAGT+AGG + chr5_1:6337384-6337403 None:intergenic 55.0%
!! CCTACTGGTACTGGTAGAGG+TGG - chr5_1:6337381-6337400 Msa0713870:intron 55.0%
GGTCGGTCACTGTCATCAAC+AGG + chr5_1:6337621-6337640 None:intergenic 55.0%
TGATGACAGTGACCGACCTC+TGG - chr5_1:6337623-6337642 Msa0713870:intron 55.0%
TCCTTACACCGAGCCAGATG+AGG - chr5_1:6338228-6338247 Msa0713870:intron 55.0%
!! TCCTCATCTGGCTCGGTGTA+AGG + chr5_1:6338232-6338251 None:intergenic 55.0%
!! TCTGGAGGTACAGGTGTTGG+CGG - chr5_1:6338449-6338468 Msa0713870:CDS 55.0%
GACACTGGTACAGCCGTTGT+GGG - chr5_1:6338530-6338549 Msa0713870:intron 55.0%
! TGATTTGCACCGCCGTGTGG+AGG + chr5_1:6332191-6332210 None:intergenic 60.0%
GGCTTTCACACGGAGGCCAA+AGG + chr5_1:6334555-6334574 None:intergenic 60.0%
ACTGCATTGCATGGGGGAGG+TGG - chr5_1:6336615-6336634 Msa0713870:intron 60.0%
ATCGACCGATGGAGCTCCTC+AGG - chr5_1:6336716-6336735 Msa0713870:intron 60.0%
GAGTGCCTGAGGAGCTCCAT+CGG + chr5_1:6336724-6336743 None:intergenic 60.0%
ACACTACTGGCGCTGCTTCC+CGG - chr5_1:6337031-6337050 Msa0713870:intron 60.0%
GGTGGCGATCCTACTGGTAC+TGG - chr5_1:6337372-6337391 Msa0713870:intron 60.0%
!! ACAGGTGTTGGCGGTGGTGT+TGG - chr5_1:6338458-6338477 Msa0713870:CDS 60.0%
TCGACAGCAGCAGGTTCAGC+CGG + chr5_1:6338512-6338531 None:intergenic 60.0%
GAACCTGCTGCTGTCGACAC+TGG - chr5_1:6338515-6338534 Msa0713870:intron 60.0%
!! GTACCAGTGTCGACAGCAGC+AGG + chr5_1:6338521-6338540 None:intergenic 60.0%
CGACACTGGTACAGCCGTTG+TGG - chr5_1:6338529-6338548 Msa0713870:intron 60.0%
GCCTCCGTGTGAAAGCCGTC+AGG - chr5_1:6334558-6334577 Msa0713870:intron 65.0%
GCCTGACGGCTTTCACACGG+AGG + chr5_1:6334562-6334581 None:intergenic 65.0%
GAAGGAGCTCCTCACCGACG+AGG - chr5_1:6336169-6336188 Msa0713870:intron 65.0%
GCATTGCATGGGGGAGGTGG+TGG - chr5_1:6336618-6336637 Msa0713870:intron 65.0%
!! GCATGGGGGAGGTGGTGGAA+AGG - chr5_1:6336623-6336642 Msa0713870:intron 65.0%
TGTGGCTGGTGACAGGGCAC+CGG - chr5_1:6336842-6336861 Msa0713870:intron 65.0%
!! GGAGGTACAGGTGTTGGCGG+TGG - chr5_1:6338452-6338471 Msa0713870:CDS 65.0%
ACAGCAGCAGGTTCAGCCGG+TGG + chr5_1:6338509-6338528 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6332142 6338886 6332142 ID=Msa0713870;Name=Msa0713870
chr5_1 mRNA 6332142 6338886 6332142 ID=Msa0713870-mRNA-1;Parent=Msa0713870;Name=Msa0713870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=195|1|1|1|1|1|11|279|592
chr5_1 exon 6332142 6332627 6332142 ID=Msa0713870-mRNA-1:exon:2681;Parent=Msa0713870-mRNA-1
chr5_1 exon 6332728 6332838 6332728 ID=Msa0713870-mRNA-1:exon:2680;Parent=Msa0713870-mRNA-1
chr5_1 exon 6333384 6333672 6333384 ID=Msa0713870-mRNA-1:exon:2679;Parent=Msa0713870-mRNA-1
chr5_1 exon 6333754 6334010 6333754 ID=Msa0713870-mRNA-1:exon:2678;Parent=Msa0713870-mRNA-1
chr5_1 exon 6334150 6334511 6334150 ID=Msa0713870-mRNA-1:exon:2677;Parent=Msa0713870-mRNA-1
chr5_1 exon 6334635 6334710 6334635 ID=Msa0713870-mRNA-1:exon:2676;Parent=Msa0713870-mRNA-1
chr5_1 exon 6334805 6334894 6334805 ID=Msa0713870-mRNA-1:exon:2675;Parent=Msa0713870-mRNA-1
chr5_1 exon 6334981 6335072 6334981 ID=Msa0713870-mRNA-1:exon:2674;Parent=Msa0713870-mRNA-1
chr5_1 exon 6337837 6337940 6337837 ID=Msa0713870-mRNA-1:exon:2673;Parent=Msa0713870-mRNA-1
chr5_1 exon 6338421 6338483 6338421 ID=Msa0713870-mRNA-1:exon:2672;Parent=Msa0713870-mRNA-1
chr5_1 exon 6338564 6338886 6338564 ID=Msa0713870-mRNA-1:exon:2671;Parent=Msa0713870-mRNA-1
chr5_1 five_prime_UTR 6338692 6338886 6338692 ID=Msa0713870-mRNA-1:five_prime_utr;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6338564 6338691 6338564 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6338421 6338483 6338421 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6337837 6337940 6337837 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6334981 6335072 6334981 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6334805 6334894 6334805 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6334635 6334710 6334635 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6334150 6334511 6334150 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6333754 6334010 6333754 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6333384 6333672 6333384 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6332728 6332838 6332728 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 CDS 6332421 6332627 6332421 ID=Msa0713870-mRNA-1:cds;Parent=Msa0713870-mRNA-1
chr5_1 three_prime_UTR 6332142 6332420 6332142 ID=Msa0713870-mRNA-1:three_prime_utr;Parent=Msa0713870-mRNA-1
Gene Sequence

>Msa0713870

ATGGGGAAGAAGCAACACAGCAAAGACCGAATGTTCTTAACCAAAACAGAATGGGCAACTGAATGGGGAGGTTACAAATCCAAAGAAAATCGCACCGTTTTCAAACGTCTTCCTTTTTATTGCTGCGCACTTACTTTTACTCCGTTTGAGTTTCCAGTTTGTACACCTGATGGCAGCGTCTTCGATGTTATGAACATAACTCCATATATTATAAAATATGGTAAACATCCTGTTACTGGAGCTCCCTTGAAGCAACAAGATCTCATTCCACTAACTTTTCACAAGAACTCAGAAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACCCACATTGTGGCAGTCAAAACTACTGGAAATGTCTTCTGCTATGAGGCTGTTAAAGAGTTAAACATCAAGACAAAAAACTGGAAGGAGCTCCTCACCGACGAGGCATTTACTAGGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACCAGAAGGTTCTTCTGGATTTTGATCATGTTAAACAGAATTTGAAAATTGACGATGAAGAACTACAGAAAATGAGTTCAGATCCAGCCTATAACATAAACATGTCGGGAGATATCAAACAAATGCTTAAAGAGCTTGGAACTGAGCAAGGAAAGGAAACTGCATTGCATGGGGGAGGTGGTGGAAAGGCACAAAAAGAAAGGGCCGCTGCACTCGCTGCCATTTTAGCTGCACGATCACAAGTTAAAGAAGATTCCAAATCGACCGATGGAGCTCCTCAGGCACTCAGTATTGTAGATGCTGCATCTGCTGCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCAGAATAGCTATGCATGTGGCTGGTGACAGGGCACCGGTGAATGCAAAGATGGTTAAAAGTCGTTACACTACTGGCGCTGCTTCCCGGTCTTTTACTTCTACATCATATGATCCAGTTACAAAAAATGATTATGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACAACACACGGTGATTTGAACATTGAGCTGCACTGTGATATAGCGCCCAGGGCATGCGAGAACTTCATCACGCTCTGTGAACGTGGATATTATAACGGAGTTGCTTTTCATAGAAGCATTAGGAATTTTATGATACAAGGTGGCGATCCTACTGGTACTGGTAGAGGTGGTGAATCAATTTGGGGAAAGCCTTTTAAGGATGAACTTAACTCCAAATTAGTCCACTCTGGAAGGGGTGTAGTTAGCATGGCAAACAGTGGCCCACATACTAATGGTTCCCAGTTTTTCATATTGTACAAATCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGCGTAGTTGGTGGATTGACTACACTAGCAACAATGGAAAAGGTTCCTGTTGATGACAGTGACCGACCTCTGGAGGAAATCAAGATAACAGGTGTCACAACTTTTGTCAATCCTTACACCGAGCCAGATGAGGAAGAAGAGCAAGCTAATGCGAAAGAGAAGAATGCAAATGATGAAGAAAATGACAAGGTTGGCTCATGGTATAGTAATCCTGGAGCTGGAACATCTGAATCTGGAGGTACAGGTGTTGGCGGTGGTGTTGGCAAATACTTGAAAGCTAGGAATGCTCCACCGGCTGAACCTGCTGCTGTCGACACTGGTACAGCCGTTGTGGGAAAGAAGAGAAAAGCAGTTGTCAGTGGTGAATTTAAAGATTTTTCTGGATGGTAG
Protein sequence

>Msa0713870

MGKKQHSKDRMFLTKTEWATEWGGYKSKENRTVFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMNITPYIIKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEAFTRDDLITIQNPNALDQKVLLDFDHVKQNLKIDDEELQKMSSDPAYNINMSGDIKQMLKELGTEQGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSTDGAPQALSIVDAASAAVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDYEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLATMEKVPVDDSDRPLEEIKITGVTTFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESGGTGVGGGVGKYLKARNAPPAEPAAVDTGTAVVGKKRKAVVSGEFKDFSGW*