AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741070 MtrunA17_Chr5g0441991 97.610 544 13 0 1 544 1 544 0.0 1103
Msa0741070 MtrunA17_Chr3g0094681 56.443 551 187 8 1 543 1 506 0.0 552
Msa0741070 MtrunA17_Chr4g0046591 53.571 56 26 0 20 75 33 88 3.34e-13 72.8
Msa0741070 MtrunA17_Chr2g0282771 51.724 58 28 0 20 77 42 99 1.08e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741070 AT4G03250.1 39.254 563 262 14 3 544 4 507 3.40e-84 271
Msa0741070 AT1G28420.1 55.357 56 25 0 20 75 41 96 1.77e-14 77.4

Find 144 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTTGACCCTTGAAAT+TGG 0.130736 5_1:-60510188 None:intergenic
TTCCATTGTTGTGAAGAATT+TGG 0.166089 5_1:-60510332 None:intergenic
CTTCCAAACATGGACTAAAT+TGG 0.226621 5_1:-60515915 None:intergenic
ACACTCCTTTGCACATTCTT+TGG 0.238382 5_1:-60514290 None:intergenic
TTGACAGAAAAGCAAGTTTC+TGG 0.248103 5_1:+60511305 Msa0741070:CDS
TCACTCCTTTGCGCTTTCTT+TGG 0.251232 5_1:-60514353 None:intergenic
GATTGCACCTTTCGGATTTA+AGG 0.253961 5_1:-60511702 None:intergenic
CCGTTGCTCTCAACCTCTTT+AGG 0.296329 5_1:-60511491 None:intergenic
AAACAAGGAGCTTGTGATTA+AGG 0.299273 5_1:-60510150 None:intergenic
AAGAAAGAGGGCTATCTTCT+AGG 0.323284 5_1:+60514435 Msa0741070:CDS
CAGGATCGTGGCAGTGGACT+TGG 0.326571 5_1:+60511419 Msa0741070:CDS
GTGCAGGATGAATTGTTTAA+AGG 0.329048 5_1:+60514556 Msa0741070:intron
GTTGCATGATGTTCATGTTC+AGG 0.329068 5_1:+60513992 Msa0741070:CDS
AAAAGTGTGTACAGTCTAAA+AGG 0.337825 5_1:+60515627 Msa0741070:three_prime_UTR
CAAAACGCCTGCACAGCTTA+AGG 0.338384 5_1:+60511130 Msa0741070:CDS
CTGAAAAGTTTGTCTATGTT+TGG 0.340704 5_1:-60514045 None:intergenic
ACTGCTGTTAAGAAGCAATT+AGG 0.344355 5_1:+60511788 Msa0741070:CDS
CACATGCAATTTACTAGTTA+AGG 0.352181 5_1:+60515651 Msa0741070:three_prime_UTR
ACATGGTGATTATAAGTATC+TGG 0.364601 5_1:+60511466 Msa0741070:CDS
CCCATGTTGATTGCACCTTT+CGG 0.370330 5_1:-60511710 None:intergenic
CTCCTTCCATATGAGTATCT+TGG 0.372564 5_1:-60513956 None:intergenic
GGAACCTGTTTCATATTGTA+TGG 0.374331 5_1:-60514800 None:intergenic
GATCCAATTTAGTCCATGTT+TGG 0.379275 5_1:+60515912 Msa0741070:three_prime_UTR
CCTTTGCACATTCTTTGGAT+TGG 0.379454 5_1:-60514285 None:intergenic
CATGAACTGCATCTTCAGTT+TGG 0.386027 5_1:-60511883 None:intergenic
GAATTTGATCCACTTCCTCC+TGG 0.387621 5_1:+60511848 Msa0741070:CDS
AATGTAACGTAAAAGAGAAA+AGG 0.394526 5_1:-60510214 None:intergenic
TGACCCCAAAATCTCAAAAC+AGG 0.398822 5_1:+60510300 Msa0741070:five_prime_UTR
TTGACCCTTGAAATTGGGTT+AGG 0.400566 5_1:-60510182 None:intergenic
GCAATTAGGAAGGAATTATC+AGG 0.404766 5_1:+60511802 Msa0741070:CDS
CAATCAATCCAGTGAGGAAC+TGG 0.405732 5_1:-60515586 None:intergenic
TGCAGGATGAATTGTTTAAA+GGG 0.406045 5_1:+60514557 Msa0741070:intron
TCCTTCCATATGAGTATCTT+GGG 0.407012 5_1:-60513955 None:intergenic
GCTAATTTCAATTCCTCTGT+TGG 0.408111 5_1:-60511263 None:intergenic
ACAACATTGCTAAGAATCAT+AGG 0.408486 5_1:+60514141 Msa0741070:CDS
CTAGAAGGCTCCATCTCATA+TGG 0.414116 5_1:-60511659 None:intergenic
CTTGGTTCTATCTCAGCAAC+AGG 0.414880 5_1:-60514821 None:intergenic
AAAACGCCTGCACAGCTTAA+GGG 0.415864 5_1:+60511131 Msa0741070:CDS
TATCGCGATGCAGGTGGAGC+AGG 0.417846 5_1:+60514601 Msa0741070:CDS
ATTGCACCTTTCGGATTTAA+GGG 0.420903 5_1:-60511701 None:intergenic
AGAGTCTTCGTACAAATCTA+AGG 0.421428 5_1:-60514102 None:intergenic
TCAATTTGACCCTTGAAATT+GGG 0.421790 5_1:-60510187 None:intergenic
TTGTTCCTAACCCAATTTCA+AGG 0.421822 5_1:+60510177 Msa0741070:five_prime_UTR
TCAACCATACAATATGAAAC+AGG 0.427437 5_1:+60514796 Msa0741070:CDS
CAAACTGAAGATGCAGTTCA+TGG 0.428553 5_1:+60511884 Msa0741070:CDS
CAAGTCCACTGCCACGATCC+TGG 0.429748 5_1:-60511418 None:intergenic
GATGCTTTCAAATGAGACTA+TGG 0.432046 5_1:+60514624 Msa0741070:CDS
GAAGAGCAGGATCAGCAATA+TGG 0.436376 5_1:-60513442 None:intergenic
AAAGAAGAAGCAAATGCTAA+TGG 0.457102 5_1:+60511368 Msa0741070:CDS
TCCAATCCCTTAAGCTGTGC+AGG 0.458833 5_1:-60511137 None:intergenic
CAGGAAGATGGTCCACTACT+TGG 0.459717 5_1:+60511821 Msa0741070:CDS
GCTCCATCTCATATGGATCT+TGG 0.461565 5_1:-60511652 None:intergenic
CATATGGAAGGAGTTGACTT+TGG 0.462273 5_1:+60513966 Msa0741070:CDS
TTTGTCTATGTTTGGTACCA+TGG 0.463442 5_1:-60514037 None:intergenic
GGGTTCCAAGCGTGGTGTTG+AGG 0.465650 5_1:+60514166 Msa0741070:CDS
TTTCTTCATAGCGATCACTA+TGG 0.468844 5_1:-60514214 None:intergenic
GGTTCCAAGCGTGGTGTTGA+GGG 0.469940 5_1:+60514167 Msa0741070:CDS
ATGAATTGTTTAAAGGGGAC+AGG 0.473398 5_1:+60514563 Msa0741070:CDS
AGAGCTTTACTATATCTAGA+AGG 0.474291 5_1:-60511674 None:intergenic
GGGAAGTCTGAATGTTTGAC+TGG 0.478673 5_1:-60514242 None:intergenic
ATGTAACGTAAAAGAGAAAA+GGG 0.479183 5_1:-60510213 None:intergenic
TCAAATGCCCCAGGAGGAAG+TGG 0.480809 5_1:-60511857 None:intergenic
TCTGGAGAATTCAGAAGAGC+AGG 0.481510 5_1:-60513455 None:intergenic
GTCATCCAGGATCGTGGCAG+TGG 0.484263 5_1:+60511413 Msa0741070:CDS
GCCTGCACAGCTTAAGGGAT+TGG 0.485122 5_1:+60511136 Msa0741070:CDS
CATACCCTCAACACCACGCT+TGG 0.488556 5_1:-60514171 None:intergenic
GATTTGTACGAAGACTCTAC+TGG 0.489485 5_1:+60514107 Msa0741070:CDS
TGCTGATACCAGTTCCTCAC+TGG 0.497663 5_1:+60515578 Msa0741070:CDS
CAGAAAAGCAAGTTTCTGGA+TGG 0.513041 5_1:+60511309 Msa0741070:CDS
TGGTTCCCAAGATACTCATA+TGG 0.513127 5_1:+60513950 Msa0741070:CDS
TTCCAAATTCTTCACAACAA+TGG 0.516500 5_1:+60510330 Msa0741070:exon
AACATGGGATATAAGCCATC+GGG 0.524849 5_1:+60511725 Msa0741070:CDS
TCTAAGGAAGAGTTCCTGCC+AGG 0.525417 5_1:-60514086 None:intergenic
AATTTGATCCACTTCCTCCT+GGG 0.526950 5_1:+60511849 Msa0741070:CDS
TCGTTCAAGCGGTGTCATCC+AGG 0.527070 5_1:+60511400 Msa0741070:CDS
TTCTGAAAATGTCAGTGGAA+TGG 0.528577 5_1:+60511571 Msa0741070:CDS
GTTTGGCATTCAAATGCCCC+AGG 0.531719 5_1:-60511866 None:intergenic
GAATTGTGGATTGAGTTTGA+AGG 0.540955 5_1:-60514392 None:intergenic
ATCGGGATATTTGAAAGTGA+AGG 0.542663 5_1:+60511742 Msa0741070:CDS
GCAGGATCAGCAATATGGTA+TGG 0.543728 5_1:-60513437 None:intergenic
GCTATCTTCTAGGATGACTA+AGG 0.550617 5_1:+60514445 Msa0741070:CDS
CAAGAACGTTTGTATCCTCA+AGG 0.550906 5_1:+60511629 Msa0741070:CDS
AGGATCGTGGCAGTGGACTT+GGG 0.551473 5_1:+60511420 Msa0741070:CDS
TGTTCCTAACCCAATTTCAA+GGG 0.554438 5_1:+60510178 Msa0741070:five_prime_UTR
AAATTCTTCACAACAATGGA+AGG 0.554885 5_1:+60510334 Msa0741070:exon
TAAGTATCTGGATCCTAAAG+AGG 0.555927 5_1:+60511478 Msa0741070:CDS
GGAAGGAATTATCAGGAAGA+TGG 0.556235 5_1:+60511809 Msa0741070:CDS
TTCACTTTCAAATATCCCGA+TGG 0.557109 5_1:-60511740 None:intergenic
CCACAGAACCTCGAGAATTG+TGG 0.558056 5_1:-60514406 None:intergenic
TCATATGGATCTTGGCCTTG+AGG 0.561124 5_1:-60511644 None:intergenic
CATTGCTAAGAATCATAGGA+AGG 0.564383 5_1:+60514145 Msa0741070:CDS
CCACAATTCTCGAGGTTCTG+TGG 0.566754 5_1:+60514406 Msa0741070:CDS
ATCGCGATGCAGGTGGAGCA+GGG 0.572378 5_1:+60514602 Msa0741070:CDS
AAGCAATATCGCGATGCAGG+TGG 0.577401 5_1:+60514595 Msa0741070:CDS
CAGATATGACGTACGGACGC+AGG 0.578687 5_1:+60511540 Msa0741070:CDS
AGGCCAAGATCCATATGAGA+TGG 0.579497 5_1:+60511649 Msa0741070:CDS
TCCGAAAGGTGCAATCAACA+TGG 0.580879 5_1:+60511709 Msa0741070:CDS
GATTCATATTATACTAAACA+TGG 0.583805 5_1:+60513930 Msa0741070:CDS
AGTTAAGGCAGTAGTAACAT+TGG 0.585447 5_1:+60515666 Msa0741070:three_prime_UTR
GTATCTAACTCTTCCAAACA+TGG 0.585852 5_1:-60515925 None:intergenic
CTACTTACAGAGCTAAGACC+AGG 0.590912 5_1:-60513500 None:intergenic
TCCCAAGATACTCATATGGA+AGG 0.591524 5_1:+60513954 Msa0741070:CDS
AACTCAATCCACAATTCTCG+AGG 0.592657 5_1:+60514398 Msa0741070:CDS
CAAGATAAGAAAGCTTTCCA+TGG 0.592693 5_1:+60514020 Msa0741070:CDS
CAACATGGGATATAAGCCAT+CGG 0.596722 5_1:+60511724 Msa0741070:CDS
ATTTGATCCACTTCCTCCTG+GGG 0.597335 5_1:+60511850 Msa0741070:CDS
CATAGGAAGGGTTCCAAGCG+TGG 0.601850 5_1:+60514158 Msa0741070:CDS
CCAAAATCTCAAAACAGGAT+CGG 0.602221 5_1:+60510305 Msa0741070:five_prime_UTR
ATTGTTTAAAGGGGACAGGA+AGG 0.604577 5_1:+60514567 Msa0741070:CDS
AGTCTGAATGTTTGACTGGG+AGG 0.604885 5_1:-60514238 None:intergenic
TCGGGATATTTGAAAGTGAA+GGG 0.606990 5_1:+60511743 Msa0741070:CDS
CTAGATTGACATGAATATGA+GGG 0.607282 5_1:-60515993 None:intergenic
TCATCCTCGCTAAAGCTAGA+CGG 0.613881 5_1:-60515552 None:intergenic
CTGTGGATACTGAAGAAAGA+GGG 0.615063 5_1:+60514423 Msa0741070:CDS
TCCACAGTGAAAAGTCGACC+TGG 0.615507 5_1:+60513482 Msa0741070:CDS
GTTCCTGCCAGGAAAACGAC+TGG 0.617478 5_1:-60514075 None:intergenic
CTTTGATGTTGCACTAAACG+TGG 0.620003 5_1:+60515790 Msa0741070:three_prime_UTR
TCAAATTCTACACCAAGTAG+TGG 0.621557 5_1:-60511833 None:intergenic
ATTGCTAAGAATCATAGGAA+GGG 0.627649 5_1:+60514146 Msa0741070:CDS
CCTAAAGAGGTTGAGAGCAA+CGG 0.628717 5_1:+60511491 Msa0741070:CDS
ATTGAAATTAGCAATTGCTG+AGG 0.629418 5_1:+60511274 Msa0741070:CDS
TCTGTTGCAGATATGACGTA+CGG 0.637863 5_1:+60511533 Msa0741070:CDS
CTTCCACCCTTAAATCCGAA+AGG 0.637927 5_1:+60511695 Msa0741070:CDS
AGCGGTGTCATCCAGGATCG+TGG 0.640192 5_1:+60511407 Msa0741070:CDS
GCAGGATGAATTGTTTAAAG+GGG 0.640528 5_1:+60514558 Msa0741070:intron
TCGTGTGGAAGCAGTAAACA+TGG 0.646504 5_1:+60511449 Msa0741070:CDS
CTGTTAAGAAGCAATTAGGA+AGG 0.648535 5_1:+60511792 Msa0741070:CDS
CAGACAAATCACGATTGTAG+AGG 0.656746 5_1:-60511514 None:intergenic
GGACTTGGGCAAGATTCGTG+TGG 0.658289 5_1:+60511434 Msa0741070:CDS
TCTGTGGATACTGAAGAAAG+AGG 0.660423 5_1:+60514422 Msa0741070:CDS
CCGAAAGGTGCAATCAACAT+GGG 0.662695 5_1:+60511710 Msa0741070:CDS
CCAATCCAAAGAATGTGCAA+AGG 0.663942 5_1:+60514285 Msa0741070:CDS
GGAAGTCTGAATGTTTGACT+GGG 0.668574 5_1:-60514241 None:intergenic
GCACCTTTCGGATTTAAGGG+TGG 0.674376 5_1:-60511698 None:intergenic
CAAGGAGCTTGTGATTAAGG+CGG 0.678761 5_1:-60510147 None:intergenic
GGACGACAAGATCGTTCAAG+CGG 0.685566 5_1:+60511389 Msa0741070:CDS
TGGCATTCAAATGCCCCAGG+AGG 0.687115 5_1:-60511863 None:intergenic
TCAATCCAAAGAAAGCGCAA+AGG 0.687671 5_1:+60514348 Msa0741070:CDS
AGAGCACAAATATCCAACAG+AGG 0.705663 5_1:+60511250 Msa0741070:intron
AGAAGAAAATAAAGTCTCTG+CGG 0.706177 5_1:+60511085 Msa0741070:CDS
TAGAACCAAGGAAAACTCAG+AGG 0.706448 5_1:+60514834 Msa0741070:CDS
GATGCCGTCTAGCTTTAGCG+AGG 0.724075 5_1:+60515548 Msa0741070:CDS
ACAAAACAATCAATCCAGTG+AGG 0.737591 5_1:-60515592 None:intergenic
CTGTTGCTGAGATAGAACCA+AGG 0.743299 5_1:+60514822 Msa0741070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATTATAATTGAAATT+AGG + chr5_1:60510601-60510620 Msa0741070:intron 10.0%
!!! TTTTTGTTGTTATAATTATT+TGG + chr5_1:60510800-60510819 Msa0741070:intron 10.0%
!! CATAAAATAATTTAAATAAC+TGG - chr5_1:60512375-60512394 None:intergenic 10.0%
!! TTAATCAAATTAATTTCATT+CGG + chr5_1:60515396-60515415 Msa0741070:intron 10.0%
!!! TTTATTTTCTTAATTTTTAC+TGG + chr5_1:60515466-60515485 Msa0741070:intron 10.0%
!!! GTCTTTTAATTTTTAATTTT+GGG + chr5_1:60515812-60515831 Msa0741070:three_prime_UTR 10.0%
!!! TTAATTAGTTTCCTTAAAAT+TGG + chr5_1:60512783-60512802 Msa0741070:intron 15.0%
!! GAGCAAAAATAAATTTATAT+TGG - chr5_1:60513256-60513275 None:intergenic 15.0%
!!! GGTCTTTTAATTTTTAATTT+TGG + chr5_1:60515811-60515830 Msa0741070:three_prime_UTR 15.0%
!!! TTTTATTCTTATTAGCGATT+TGG + chr5_1:60510377-60510396 Msa0741070:intron 20.0%
!! TTTATTCTTATTAGCGATTT+GGG + chr5_1:60510378-60510397 Msa0741070:intron 20.0%
!! TTTCATATAACTAATAGAAC+GGG - chr5_1:60511952-60511971 None:intergenic 20.0%
!! GTTTCATATAACTAATAGAA+CGG - chr5_1:60511953-60511972 None:intergenic 20.0%
!!! ATGAAACTAAAATGTTGTTT+AGG + chr5_1:60511966-60511985 Msa0741070:intron 20.0%
!!! TTTGATTTTTCAAAACTGTT+AGG + chr5_1:60512454-60512473 Msa0741070:intron 20.0%
!! ATTCATTTATGTTATACAAC+CGG + chr5_1:60512696-60512715 Msa0741070:intron 20.0%
!!! GGATTAGAAATTTAGAATAT+AGG + chr5_1:60512848-60512867 Msa0741070:intron 20.0%
!!! AAATTTAGAATATAGGTTCT+AGG + chr5_1:60512855-60512874 Msa0741070:intron 20.0%
!! ATGATGCTATTCTTAAAATT+TGG + chr5_1:60512951-60512970 Msa0741070:intron 20.0%
!!! GAAATATTTCTAGAAAAACA+TGG - chr5_1:60513282-60513301 None:intergenic 20.0%
!! TATTGAAAGCGAAAATAAAT+CGG - chr5_1:60513328-60513347 None:intergenic 20.0%
!! AATTAAATGACTTGAAACAA+TGG - chr5_1:60513748-60513767 None:intergenic 20.0%
!! GATTCATATTATACTAAACA+TGG + chr5_1:60513930-60513949 Msa0741070:CDS 20.0%
!! ATTAAGAAAATAAAACTGTG+AGG - chr5_1:60515460-60515479 None:intergenic 20.0%
!!! TTTTTCTTGTAGTTTAATTG+TGG + chr5_1:60515866-60515885 Msa0741070:three_prime_UTR 20.0%
! ATGTAACGTAAAAGAGAAAA+GGG - chr5_1:60510216-60510235 None:intergenic 25.0%
! AATGTAACGTAAAAGAGAAA+AGG - chr5_1:60510217-60510236 None:intergenic 25.0%
!! ACATTCTCTTTTACGTTAAA+TGG + chr5_1:60510232-60510251 Msa0741070:five_prime_UTR 25.0%
!! CATTCTCTTTTACGTTAAAT+GGG + chr5_1:60510233-60510252 Msa0741070:five_prime_UTR 25.0%
! ATTGAGATTGAATCAATGTT+AGG + chr5_1:60510439-60510458 Msa0741070:intron 25.0%
! TGACATAAAGGACTTAAATT+TGG + chr5_1:60510520-60510539 Msa0741070:intron 25.0%
! GACATAAAGGACTTAAATTT+GGG + chr5_1:60510521-60510540 Msa0741070:intron 25.0%
! ACATAAAGGACTTAAATTTG+GGG + chr5_1:60510522-60510541 Msa0741070:intron 25.0%
! AGTTAAAGAAATAAGCTTTC+TGG + chr5_1:60510847-60510866 Msa0741070:intron 25.0%
! ATAAGATATACAACAATCAC+AGG - chr5_1:60510977-60510996 None:intergenic 25.0%
!! ATCTTTTATCCTTTAACCTT+CGG - chr5_1:60511343-60511362 None:intergenic 25.0%
!! ATCATTTAGGATAAAGGAAT+AGG + chr5_1:60512014-60512033 Msa0741070:intron 25.0%
! TGTTAGTATTAATACTACCA+AGG + chr5_1:60512239-60512258 Msa0741070:intron 25.0%
! CTTATCAAGTTAATTGTCAT+TGG - chr5_1:60512265-60512284 None:intergenic 25.0%
!! CAATGACAATTAACTTGATA+AGG + chr5_1:60512263-60512282 Msa0741070:intron 25.0%
! TAAAAAATTGAGCTACATCA+AGG - chr5_1:60512490-60512509 None:intergenic 25.0%
! ACATATAAATAGACAGATGT+AGG + chr5_1:60512571-60512590 Msa0741070:intron 25.0%
! ATATATAGTGAGAAAATGAG+AGG + chr5_1:60512605-60512624 Msa0741070:intron 25.0%
! GGTTGTATAACATAAATGAA+TGG - chr5_1:60512697-60512716 None:intergenic 25.0%
!! TTTATCTAGTCCATATTTTG+AGG + chr5_1:60512750-60512769 Msa0741070:intron 25.0%
!!! TTATCTAGTCCATATTTTGA+GGG + chr5_1:60512751-60512770 Msa0741070:intron 25.0%
!! GAATAAGCTATCCAATTTTA+AGG - chr5_1:60512797-60512816 None:intergenic 25.0%
! ATCCTAATACCTTAAAAACA+CGG - chr5_1:60512832-60512851 None:intergenic 25.0%
! TCTATCCTAAATATGATACT+GGG - chr5_1:60512929-60512948 None:intergenic 25.0%
! TCAACAACTATATTAGAATC+TGG + chr5_1:60513064-60513083 Msa0741070:intron 25.0%
! CAACAACTATATTAGAATCT+GGG + chr5_1:60513065-60513084 Msa0741070:intron 25.0%
! TTCTTACCTTTGTATTGTTA+TGG + chr5_1:60513400-60513419 Msa0741070:intron 25.0%
! CATGGAAAAACTTAATTACT+AGG - chr5_1:60513558-60513577 None:intergenic 25.0%
!! CTAGTAATTAAGTTTTTCCA+TGG + chr5_1:60513556-60513575 Msa0741070:intron 25.0%
!! AATTAAGTTTTTCCATGGAA+TGG + chr5_1:60513561-60513580 Msa0741070:intron 25.0%
!! ATTAAGTTTTTCCATGGAAT+GGG + chr5_1:60513562-60513581 Msa0741070:intron 25.0%
! CAAATCAATGATGATTTACA+AGG + chr5_1:60513600-60513619 Msa0741070:intron 25.0%
! AAAATTAAATGCAGCTGAAA+TGG + chr5_1:60513628-60513647 Msa0741070:intron 25.0%
! TAACCAAAGTAAGAAGTTAA+AGG - chr5_1:60513683-60513702 None:intergenic 25.0%
! TAACTTCTTACTTTGGTTAA+AGG + chr5_1:60513684-60513703 Msa0741070:intron 25.0%
! AACTTCTTACTTTGGTTAAA+GGG + chr5_1:60513685-60513704 Msa0741070:intron 25.0%
! AAGAAGTGAATGATATTTGT+AGG + chr5_1:60513712-60513731 Msa0741070:intron 25.0%
!! TTGCAAGAGAAACTTTTAAA+CGG + chr5_1:60513766-60513785 Msa0741070:intron 25.0%
! AATTACTATGAGCACTTATA+CGG - chr5_1:60513810-60513829 None:intergenic 25.0%
!! TGTTTTCATAGTTATACTGT+GGG - chr5_1:60514265-60514284 None:intergenic 25.0%
! CAATTTATTCTGCTTACAAA+TGG + chr5_1:60514505-60514524 Msa0741070:intron 25.0%
!!! TGATTTTCTGAAAGCATAAT+AGG - chr5_1:60514961-60514980 None:intergenic 25.0%
! AATGTTCAATAGTAAGCTTT+CGG + chr5_1:60514992-60515011 Msa0741070:intron 25.0%
!! TTCTTAATTTTTACTGGATG+TGG + chr5_1:60515472-60515491 Msa0741070:intron 25.0%
!!! TTTCTTTTTTCAAAGGCAAT+AGG - chr5_1:60515752-60515771 None:intergenic 25.0%
!! TTGCCTTTGAAAAAAGAAAT+TGG + chr5_1:60515753-60515772 Msa0741070:three_prime_UTR 25.0%
!!! ACACCAATTTCTTTTTTCAA+AGG - chr5_1:60515759-60515778 None:intergenic 25.0%
GTTAGGAACAAAGAAAAACA+AGG - chr5_1:60510168-60510187 None:intergenic 30.0%
TCAATTTGACCCTTGAAATT+GGG - chr5_1:60510190-60510209 None:intergenic 30.0%
TTCAATTTGACCCTTGAAAT+TGG - chr5_1:60510191-60510210 None:intergenic 30.0%
TTCCAAATTCTTCACAACAA+TGG + chr5_1:60510330-60510349 Msa0741070:exon 30.0%
TTCCATTGTTGTGAAGAATT+TGG - chr5_1:60510335-60510354 None:intergenic 30.0%
AAATTCTTCACAACAATGGA+AGG + chr5_1:60510334-60510353 Msa0741070:exon 30.0%
TTAGGTTCGAATCTACAATA+TGG + chr5_1:60510457-60510476 Msa0741070:intron 30.0%
! ATATGGATTGTTTGCATTAC+AGG + chr5_1:60510474-60510493 Msa0741070:intron 30.0%
! TATGGATTGTTTGCATTACA+GGG + chr5_1:60510475-60510494 Msa0741070:intron 30.0%
AGAAAGTGAGTCAAACTTAA+GGG + chr5_1:60510558-60510577 Msa0741070:intron 30.0%
! TCAAACTTAAGGGTATGAAA+GGG + chr5_1:60510568-60510587 Msa0741070:intron 30.0%
TCATGTATGAGATTTCATGT+TGG + chr5_1:60510915-60510934 Msa0741070:intron 30.0%
AGAAGAAAATAAAGTCTCTG+CGG + chr5_1:60511085-60511104 Msa0741070:CDS 30.0%
! GGGATTGGAGAAATTTTATA+CGG + chr5_1:60511151-60511170 Msa0741070:CDS 30.0%
! GGATTGGAGAAATTTTATAC+GGG + chr5_1:60511152-60511171 Msa0741070:CDS 30.0%
TTCAACAAAAATCATCACAG+AGG - chr5_1:60511208-60511227 None:intergenic 30.0%
ATTGAAATTAGCAATTGCTG+AGG + chr5_1:60511274-60511293 Msa0741070:CDS 30.0%
AAAGAAGAAGCAAATGCTAA+TGG + chr5_1:60511368-60511387 Msa0741070:CDS 30.0%
ACATGGTGATTATAAGTATC+TGG + chr5_1:60511466-60511485 Msa0741070:CDS 30.0%
!! CATTTTTCTGAAAATGTCAG+TGG + chr5_1:60511566-60511585 Msa0741070:CDS 30.0%
AGAGCTTTACTATATCTAGA+AGG - chr5_1:60511677-60511696 None:intergenic 30.0%
! TGTTGTTTAGGTTTGAAACT+TGG + chr5_1:60511978-60511997 Msa0741070:intron 30.0%
AACAATGTAGCTGATCATTT+AGG + chr5_1:60512001-60512020 Msa0741070:intron 30.0%
! TAGCTGATCATTTAGGATAA+AGG + chr5_1:60512008-60512027 Msa0741070:intron 30.0%
CATCACGTTGTAATAATGTT+AGG + chr5_1:60512044-60512063 Msa0741070:intron 30.0%
GAATGCTTAAAGATAGATCT+CGG + chr5_1:60512091-60512110 Msa0741070:intron 30.0%
GGCTTATAAGTTATGACTTA+AGG - chr5_1:60512354-60512373 None:intergenic 30.0%
GAATTAGTATTTGCTTGATC+TGG + chr5_1:60512529-60512548 Msa0741070:intron 30.0%
ATAAATAGACAGATGTAGGT+AGG + chr5_1:60512575-60512594 Msa0741070:intron 30.0%
TGCAATTATGAGAAGAATAC+CGG - chr5_1:60512718-60512737 None:intergenic 30.0%
AAAAACACGGCATTATCTTT+CGG - chr5_1:60512819-60512838 None:intergenic 30.0%
!! AAGATAATGCCGTGTTTTTA+AGG + chr5_1:60512820-60512839 Msa0741070:intron 30.0%
GTCTATCCTAAATATGATAC+TGG - chr5_1:60512930-60512949 None:intergenic 30.0%
AGCATAATAATCTTTGTGCA+AGG + chr5_1:60513210-60513229 Msa0741070:intron 30.0%
GAAATATTTCATCGTAGCTA+AGG + chr5_1:60513292-60513311 Msa0741070:intron 30.0%
TAGCATCCATAACAATACAA+AGG - chr5_1:60513409-60513428 None:intergenic 30.0%
AAAATGAGAACGCATTAGAA+AGG - chr5_1:60513527-60513546 None:intergenic 30.0%
! AGTCCTTTAACTTCTTACTT+TGG + chr5_1:60513677-60513696 Msa0741070:intron 30.0%
CTGAAAAGTTTGTCTATGTT+TGG - chr5_1:60514048-60514067 None:intergenic 30.0%
ACAACATTGCTAAGAATCAT+AGG + chr5_1:60514141-60514160 Msa0741070:CDS 30.0%
ATTGCTAAGAATCATAGGAA+GGG + chr5_1:60514146-60514165 Msa0741070:CDS 30.0%
! GTGTTTTCATAGTTATACTG+TGG - chr5_1:60514266-60514285 None:intergenic 30.0%
TGCAGGATGAATTGTTTAAA+GGG + chr5_1:60514557-60514576 Msa0741070:intron 30.0%
! ATAATCACATTCTAGAGATG+CGG - chr5_1:60514674-60514693 None:intergenic 30.0%
! TTTTGCTTTGGTATGTGTAT+AGG + chr5_1:60514745-60514764 Msa0741070:intron 30.0%
TCAACCATACAATATGAAAC+AGG + chr5_1:60514796-60514815 Msa0741070:CDS 30.0%
TCCTCTTTAATGAAGATAAG+AGG + chr5_1:60515067-60515086 Msa0741070:intron 30.0%
TCCTCTTATCTTCATTAAAG+AGG - chr5_1:60515071-60515090 None:intergenic 30.0%
!! TTGCATCAAACTTGCTTTTA+TGG + chr5_1:60515310-60515329 Msa0741070:intron 30.0%
AGAAAATAAAACTGTGAGGT+TGG - chr5_1:60515456-60515475 None:intergenic 30.0%
! AAAAGTGTGTACAGTCTAAA+AGG + chr5_1:60515627-60515646 Msa0741070:three_prime_UTR 30.0%
CACATGCAATTTACTAGTTA+AGG + chr5_1:60515651-60515670 Msa0741070:three_prime_UTR 30.0%
! TAATTTTGGGCATTTGATGT+AGG + chr5_1:60515825-60515844 Msa0741070:three_prime_UTR 30.0%
AAACAAGGAGCTTGTGATTA+AGG - chr5_1:60510153-60510172 None:intergenic 35.0%
TTGTTCCTAACCCAATTTCA+AGG + chr5_1:60510177-60510196 Msa0741070:five_prime_UTR 35.0%
TGTTCCTAACCCAATTTCAA+GGG + chr5_1:60510178-60510197 Msa0741070:five_prime_UTR 35.0%
!!! TGAGATTTTGGGGTCAAAAA+AGG - chr5_1:60510296-60510315 None:intergenic 35.0%
!!! GATCCTGTTTTGAGATTTTG+GGG - chr5_1:60510306-60510325 None:intergenic 35.0%
!!! CGATCCTGTTTTGAGATTTT+GGG - chr5_1:60510307-60510326 None:intergenic 35.0%
CCAAAATCTCAAAACAGGAT+CGG + chr5_1:60510305-60510324 Msa0741070:five_prime_UTR 35.0%
! GATTTGGGTCATTCATTTTG+TGG + chr5_1:60510393-60510412 Msa0741070:intron 35.0%
!! CAATGGTGGATTTGACATAA+AGG + chr5_1:60510508-60510527 Msa0741070:intron 35.0%
! GACTTAAATTTGGGGTCTTT+GGG + chr5_1:60510530-60510549 Msa0741070:intron 35.0%
GAGAAAGTGAGTCAAACTTA+AGG + chr5_1:60510557-60510576 Msa0741070:intron 35.0%
! GTCAAACTTAAGGGTATGAA+AGG + chr5_1:60510567-60510586 Msa0741070:intron 35.0%
! CAAACTTAAGGGTATGAAAG+GGG + chr5_1:60510569-60510588 Msa0741070:intron 35.0%
AAGTAGATCCAAGTGGTTTA+TGG - chr5_1:60510698-60510717 None:intergenic 35.0%
TCTACTTTCTGTGTGAGATA+AGG + chr5_1:60510711-60510730 Msa0741070:intron 35.0%
CTACTTTCTGTGTGAGATAA+GGG + chr5_1:60510712-60510731 Msa0741070:intron 35.0%
TTTGTTGACATAGCACAAGA+TGG + chr5_1:60510948-60510967 Msa0741070:intron 35.0%
TAAACTTCTTGCTTCTCGTT+TGG + chr5_1:60511036-60511055 Msa0741070:intron 35.0%
!!! GCAGAGACTTTATTTTCTTC+TGG - chr5_1:60511086-60511105 None:intergenic 35.0%
! TGGAGAAATTTTATACGGGT+AGG + chr5_1:60511156-60511175 Msa0741070:intron 35.0%
! GGAGAAATTTTATACGGGTA+GGG + chr5_1:60511157-60511176 Msa0741070:intron 35.0%
!! TATTTGTGCTCTGGAAACAA+AGG - chr5_1:60511242-60511261 None:intergenic 35.0%
GCTAATTTCAATTCCTCTGT+TGG - chr5_1:60511266-60511285 None:intergenic 35.0%
TTGACAGAAAAGCAAGTTTC+TGG + chr5_1:60511305-60511324 Msa0741070:CDS 35.0%
TAAGTATCTGGATCCTAAAG+AGG + chr5_1:60511478-60511497 Msa0741070:CDS 35.0%
! TTCTGAAAATGTCAGTGGAA+TGG + chr5_1:60511571-60511590 Msa0741070:CDS 35.0%
ATTGCACCTTTCGGATTTAA+GGG - chr5_1:60511704-60511723 None:intergenic 35.0%
TTCACTTTCAAATATCCCGA+TGG - chr5_1:60511743-60511762 None:intergenic 35.0%
ATCGGGATATTTGAAAGTGA+AGG + chr5_1:60511742-60511761 Msa0741070:CDS 35.0%
TCGGGATATTTGAAAGTGAA+GGG + chr5_1:60511743-60511762 Msa0741070:CDS 35.0%
ACTGCTGTTAAGAAGCAATT+AGG + chr5_1:60511788-60511807 Msa0741070:CDS 35.0%
CTGTTAAGAAGCAATTAGGA+AGG + chr5_1:60511792-60511811 Msa0741070:CDS 35.0%
GCAATTAGGAAGGAATTATC+AGG + chr5_1:60511802-60511821 Msa0741070:CDS 35.0%
TCAAATTCTACACCAAGTAG+TGG - chr5_1:60511836-60511855 None:intergenic 35.0%
GAAAGAAAAACGGGGAAATA+GGG - chr5_1:60511924-60511943 None:intergenic 35.0%
ATAACTAATAGAACGGGAAC+TGG - chr5_1:60511946-60511965 None:intergenic 35.0%
ATGTTCATGTGCTATGCATT+GGG + chr5_1:60512181-60512200 Msa0741070:intron 35.0%
! AAGTTAATTGTCATTGGCCT+TGG - chr5_1:60512259-60512278 None:intergenic 35.0%
TTCTTGAAACAACTTAGTCC+TGG - chr5_1:60512434-60512453 None:intergenic 35.0%
CTTGACTATTAGTGTATCGT+GGG - chr5_1:60512647-60512666 None:intergenic 35.0%
TCTTGACTATTAGTGTATCG+TGG - chr5_1:60512648-60512667 None:intergenic 35.0%
!!! TGCCGTGTTTTTAAGGTATT+AGG + chr5_1:60512827-60512846 Msa0741070:intron 35.0%
!! TTAGAATATAGGTTCTAGGC+TGG + chr5_1:60512859-60512878 Msa0741070:intron 35.0%
AGTGTCCCAGTATCATATTT+AGG + chr5_1:60512921-60512940 Msa0741070:intron 35.0%
!! CGGTTTTTAAGAGTTGAGTT+AGG - chr5_1:60512983-60513002 None:intergenic 35.0%
CTCTTAAAAACCGTCTTGTA+AGG + chr5_1:60512990-60513009 Msa0741070:intron 35.0%
AAAAACCGTCTTGTAAGGTA+AGG + chr5_1:60512995-60513014 Msa0741070:intron 35.0%
! AACCCAAAAAGCTAGCTTAA+GGG + chr5_1:60513096-60513115 Msa0741070:intron 35.0%
CGTTTGCTCAAGTCTTTATA+AGG + chr5_1:60513123-60513142 Msa0741070:intron 35.0%
!!! AGGTGTTGTTTTGCTTGTTT+AGG + chr5_1:60513230-60513249 Msa0741070:intron 35.0%
CAGTTGCTACATTTATGAAC+AGG - chr5_1:60513846-60513865 None:intergenic 35.0%
TAAAAGAGAGTGAGAAAGCA+GGG - chr5_1:60513889-60513908 None:intergenic 35.0%
TCCTTCCATATGAGTATCTT+GGG - chr5_1:60513958-60513977 None:intergenic 35.0%
CAAGATAAGAAAGCTTTCCA+TGG + chr5_1:60514020-60514039 Msa0741070:CDS 35.0%
TTTGTCTATGTTTGGTACCA+TGG - chr5_1:60514040-60514059 None:intergenic 35.0%
AGAGTCTTCGTACAAATCTA+AGG - chr5_1:60514105-60514124 None:intergenic 35.0%
CATTGCTAAGAATCATAGGA+AGG + chr5_1:60514145-60514164 Msa0741070:CDS 35.0%
TTTCTTCATAGCGATCACTA+TGG - chr5_1:60514217-60514236 None:intergenic 35.0%
! GAATTGTGGATTGAGTTTGA+AGG - chr5_1:60514395-60514414 None:intergenic 35.0%
! ATATTTTGTTGCATGTGTGC+AGG + chr5_1:60514540-60514559 Msa0741070:intron 35.0%
GTGCAGGATGAATTGTTTAA+AGG + chr5_1:60514556-60514575 Msa0741070:intron 35.0%
GCAGGATGAATTGTTTAAAG+GGG + chr5_1:60514558-60514577 Msa0741070:intron 35.0%
ATGAATTGTTTAAAGGGGAC+AGG + chr5_1:60514563-60514582 Msa0741070:CDS 35.0%
GATGCTTTCAAATGAGACTA+TGG + chr5_1:60514624-60514643 Msa0741070:CDS 35.0%
! TAATCACATTCTAGAGATGC+GGG - chr5_1:60514673-60514692 None:intergenic 35.0%
GGAACCTGTTTCATATTGTA+TGG - chr5_1:60514803-60514822 None:intergenic 35.0%
TAAGCTCCAAAACTTCTAAG+AGG - chr5_1:60514905-60514924 None:intergenic 35.0%
TTGGTAAATTGAGCTCAATG+TGG + chr5_1:60515117-60515136 Msa0741070:intron 35.0%
!! TTTACAAAGGTGCTTCTAGT+GGG - chr5_1:60515175-60515194 None:intergenic 35.0%
!!! TTTTACAAAGGTGCTTCTAG+TGG - chr5_1:60515176-60515195 None:intergenic 35.0%
!! CTAGAAGCACCTTTGTAAAA+AGG + chr5_1:60515176-60515195 Msa0741070:intron 35.0%
! TAGGGCATACCTTTTTACAA+AGG - chr5_1:60515188-60515207 None:intergenic 35.0%
AACTAAACTAAACCCTGCTA+GGG - chr5_1:60515206-60515225 None:intergenic 35.0%
GCACAATGTTGTTAGAAACA+GGG - chr5_1:60515498-60515517 None:intergenic 35.0%
TGCACAATGTTGTTAGAAAC+AGG - chr5_1:60515499-60515518 None:intergenic 35.0%
ACAAAACAATCAATCCAGTG+AGG - chr5_1:60515595-60515614 None:intergenic 35.0%
AGTTAAGGCAGTAGTAACAT+TGG + chr5_1:60515666-60515685 Msa0741070:three_prime_UTR 35.0%
GATCCAATTTAGTCCATGTT+TGG + chr5_1:60515912-60515931 Msa0741070:three_prime_UTR 35.0%
! CTTCCAAACATGGACTAAAT+TGG - chr5_1:60515918-60515937 None:intergenic 35.0%
GTATCTAACTCTTCCAAACA+TGG - chr5_1:60515928-60515947 None:intergenic 35.0%
TTGACCCTTGAAATTGGGTT+AGG - chr5_1:60510185-60510204 None:intergenic 40.0%
TGACCCCAAAATCTCAAAAC+AGG + chr5_1:60510300-60510319 Msa0741070:five_prime_UTR 40.0%
!!! CCGATCCTGTTTTGAGATTT+TGG - chr5_1:60510308-60510327 None:intergenic 40.0%
TACAGGGTAGATTGTTGCAA+TGG + chr5_1:60510491-60510510 Msa0741070:intron 40.0%
! GGACTTAAATTTGGGGTCTT+TGG + chr5_1:60510529-60510548 Msa0741070:intron 40.0%
! TTAAGGGTATGAAAGGGGTT+TGG + chr5_1:60510574-60510593 Msa0741070:intron 40.0%
GTCATTGACCATAAACCACT+TGG + chr5_1:60510687-60510706 Msa0741070:intron 40.0%
ACACAGAAAGTAGATCCAAG+TGG - chr5_1:60510705-60510724 None:intergenic 40.0%
!! GGCGTTTTGAGCTTTCTTTT+CGG - chr5_1:60511119-60511138 None:intergenic 40.0%
TCTGTTGGATATTTGTGCTC+TGG - chr5_1:60511251-60511270 None:intergenic 40.0%
AGAGCACAAATATCCAACAG+AGG + chr5_1:60511250-60511269 Msa0741070:intron 40.0%
! CAGAAAAGCAAGTTTCTGGA+TGG + chr5_1:60511309-60511328 Msa0741070:CDS 40.0%
! GTTTTGTCACCGAAGGTTAA+AGG + chr5_1:60511331-60511350 Msa0741070:CDS 40.0%
CAGACAAATCACGATTGTAG+AGG - chr5_1:60511517-60511536 None:intergenic 40.0%
TCTGTTGCAGATATGACGTA+CGG + chr5_1:60511533-60511552 Msa0741070:CDS 40.0%
CAAGAACGTTTGTATCCTCA+AGG + chr5_1:60511629-60511648 Msa0741070:CDS 40.0%
GATTGCACCTTTCGGATTTA+AGG - chr5_1:60511705-60511724 None:intergenic 40.0%
CAACATGGGATATAAGCCAT+CGG + chr5_1:60511724-60511743 Msa0741070:CDS 40.0%
AACATGGGATATAAGCCATC+GGG + chr5_1:60511725-60511744 Msa0741070:CDS 40.0%
GGAAGGAATTATCAGGAAGA+TGG + chr5_1:60511809-60511828 Msa0741070:CDS 40.0%
AATTTGATCCACTTCCTCCT+GGG + chr5_1:60511849-60511868 Msa0741070:CDS 40.0%
CATGAACTGCATCTTCAGTT+TGG - chr5_1:60511886-60511905 None:intergenic 40.0%
CAAACTGAAGATGCAGTTCA+TGG + chr5_1:60511884-60511903 Msa0741070:CDS 40.0%
GGAAAGAAAAACGGGGAAAT+AGG - chr5_1:60511925-60511944 None:intergenic 40.0%
ACGGGAACTGGAAAGAAAAA+CGG - chr5_1:60511934-60511953 None:intergenic 40.0%
!! AGATAGATCTCGGTTTGCTA+TGG + chr5_1:60512101-60512120 Msa0741070:intron 40.0%
!! GATAGATCTCGGTTTGCTAT+GGG + chr5_1:60512102-60512121 Msa0741070:intron 40.0%
! TTCTAGAAATAACCTACCCC+AGG - chr5_1:60512128-60512147 None:intergenic 40.0%
!! GGGGTAGGTTATTTCTAGAA+TGG + chr5_1:60512128-60512147 Msa0741070:intron 40.0%
TGAACATGATGCAGGTTAGA+TGG - chr5_1:60512168-60512187 None:intergenic 40.0%
ATAGCACATGAACATGATGC+AGG - chr5_1:60512176-60512195 None:intergenic 40.0%
CATGTTCATGTGCTATGCAT+TGG + chr5_1:60512180-60512199 Msa0741070:intron 40.0%
!!! GAGCTTTTAGTTTTAGTGCC+AGG + chr5_1:60512413-60512432 Msa0741070:intron 40.0%
ACTATTAGTGTATCGTGGGA+TGG - chr5_1:60512643-60512662 None:intergenic 40.0%
!! GTCCATATTTTGAGGGTTTG+TGG + chr5_1:60512758-60512777 Msa0741070:intron 40.0%
AGCCACAAACCCTCAAAATA+TGG - chr5_1:60512763-60512782 None:intergenic 40.0%
GAAGTCCTTACCTTACAAGA+CGG - chr5_1:60513003-60513022 None:intergenic 40.0%
GACTAGAGTTACGACATATG+TGG - chr5_1:60513030-60513049 None:intergenic 40.0%
TATGTCGTAACTCTAGTCGA+TGG + chr5_1:60513032-60513051 Msa0741070:intron 40.0%
ATGTCGTAACTCTAGTCGAT+GGG + chr5_1:60513033-60513052 Msa0741070:intron 40.0%
! CAACCCAAAAAGCTAGCTTA+AGG + chr5_1:60513095-60513114 Msa0741070:intron 40.0%
! ACCCAAAAAGCTAGCTTAAG+GGG + chr5_1:60513097-60513116 Msa0741070:intron 40.0%
GGGTCTTAACTTAAGGTTCA+CGG + chr5_1:60513176-60513195 Msa0741070:intron 40.0%
! CTTTTCACTGTGGAGATTTC+TGG - chr5_1:60513476-60513495 None:intergenic 40.0%
AAAAGAGAGTGAGAAAGCAG+GGG - chr5_1:60513888-60513907 None:intergenic 40.0%
GTAAAAGAGAGTGAGAAAGC+AGG - chr5_1:60513890-60513909 None:intergenic 40.0%
TGGTTCCCAAGATACTCATA+TGG + chr5_1:60513950-60513969 Msa0741070:CDS 40.0%
TCCCAAGATACTCATATGGA+AGG + chr5_1:60513954-60513973 Msa0741070:CDS 40.0%
CTCCTTCCATATGAGTATCT+TGG - chr5_1:60513959-60513978 None:intergenic 40.0%
! CATATGGAAGGAGTTGACTT+TGG + chr5_1:60513966-60513985 Msa0741070:CDS 40.0%
GTTGCATGATGTTCATGTTC+AGG + chr5_1:60513992-60514011 Msa0741070:CDS 40.0%
GATTTGTACGAAGACTCTAC+TGG + chr5_1:60514107-60514126 Msa0741070:CDS 40.0%
GGAAGTCTGAATGTTTGACT+GGG - chr5_1:60514244-60514263 None:intergenic 40.0%
CCTTTGCACATTCTTTGGAT+TGG - chr5_1:60514288-60514307 None:intergenic 40.0%
CCAATCCAAAGAATGTGCAA+AGG + chr5_1:60514285-60514304 Msa0741070:CDS 40.0%
ACACTCCTTTGCACATTCTT+TGG - chr5_1:60514293-60514312 None:intergenic 40.0%
! TCAATCCAAAGAAAGCGCAA+AGG + chr5_1:60514348-60514367 Msa0741070:CDS 40.0%
AACTCAATCCACAATTCTCG+AGG + chr5_1:60514398-60514417 Msa0741070:CDS 40.0%
TCTGTGGATACTGAAGAAAG+AGG + chr5_1:60514422-60514441 Msa0741070:CDS 40.0%
CTGTGGATACTGAAGAAAGA+GGG + chr5_1:60514423-60514442 Msa0741070:CDS 40.0%
AAGAAAGAGGGCTATCTTCT+AGG + chr5_1:60514435-60514454 Msa0741070:CDS 40.0%
!! GCTATCTTCTAGGATGACTA+AGG + chr5_1:60514445-60514464 Msa0741070:CDS 40.0%
ATTGTTTAAAGGGGACAGGA+AGG + chr5_1:60514567-60514586 Msa0741070:CDS 40.0%
AAAAAGCAATATCGCGATGC+AGG + chr5_1:60514592-60514611 Msa0741070:CDS 40.0%
! GCACACATGATGTTTTGCTT+TGG + chr5_1:60514733-60514752 Msa0741070:intron 40.0%
TAGAACCAAGGAAAACTCAG+AGG + chr5_1:60514834-60514853 Msa0741070:CDS 40.0%
! CAAAACTTCTAAGAGGACGT+GGG - chr5_1:60514898-60514917 None:intergenic 40.0%
! TAAAAAGGTATGCCCTAGCA+GGG + chr5_1:60515191-60515210 Msa0741070:intron 40.0%
GAACTAAACTAAACCCTGCT+AGG - chr5_1:60515207-60515226 None:intergenic 40.0%
AAGGCAAAATCACAAGGTGT+GGG - chr5_1:60515233-60515252 None:intergenic 40.0%
GGTTTGAAGGCAAAATCACA+AGG - chr5_1:60515239-60515258 None:intergenic 40.0%
! GTGATTTTGCCTTCAAACCT+CGG + chr5_1:60515240-60515259 Msa0741070:intron 40.0%
ATTCAGTTGTAGTCAAACCG+AGG - chr5_1:60515260-60515279 None:intergenic 40.0%
!!! CTGTTTTTTCCAGCTAACCA+AGG - chr5_1:60515358-60515377 None:intergenic 40.0%
!! TGTGAGGTTGGTGTGTATTT+GGG - chr5_1:60515444-60515463 None:intergenic 40.0%
CTTTGATGTTGCACTAAACG+TGG + chr5_1:60515790-60515809 Msa0741070:three_prime_UTR 40.0%
CAAGGAGCTTGTGATTAAGG+CGG - chr5_1:60510150-60510169 None:intergenic 45.0%
AGGGTAGATTGTTGCAATGG+TGG + chr5_1:60510494-60510513 Msa0741070:intron 45.0%
GAGATAAGGGTTTGCACTGA+AGG + chr5_1:60510725-60510744 Msa0741070:intron 45.0%
AAAACGCCTGCACAGCTTAA+GGG + chr5_1:60511131-60511150 Msa0741070:CDS 45.0%
TCGTGTGGAAGCAGTAAACA+TGG + chr5_1:60511449-60511468 Msa0741070:CDS 45.0%
CCTAAAGAGGTTGAGAGCAA+CGG + chr5_1:60511491-60511510 Msa0741070:CDS 45.0%
!! TCATATGGATCTTGGCCTTG+AGG - chr5_1:60511647-60511666 None:intergenic 45.0%
AGGCCAAGATCCATATGAGA+TGG + chr5_1:60511649-60511668 Msa0741070:CDS 45.0%
GCTCCATCTCATATGGATCT+TGG - chr5_1:60511655-60511674 None:intergenic 45.0%
CTAGAAGGCTCCATCTCATA+TGG - chr5_1:60511662-60511681 None:intergenic 45.0%
CTTCCACCCTTAAATCCGAA+AGG + chr5_1:60511695-60511714 Msa0741070:CDS 45.0%
! TCCGAAAGGTGCAATCAACA+TGG + chr5_1:60511709-60511728 Msa0741070:CDS 45.0%
! CCCATGTTGATTGCACCTTT+CGG - chr5_1:60511713-60511732 None:intergenic 45.0%
! CCGAAAGGTGCAATCAACAT+GGG + chr5_1:60511710-60511729 Msa0741070:CDS 45.0%
GAATTTGATCCACTTCCTCC+TGG + chr5_1:60511848-60511867 Msa0741070:CDS 45.0%
ATTTGATCCACTTCCTCCTG+GGG + chr5_1:60511850-60511869 Msa0741070:CDS 45.0%
CTGAAGATGCAGTTCATGGT+AGG + chr5_1:60511888-60511907 Msa0741070:intron 45.0%
GGGAACTGGAAAGAAAAACG+GGG - chr5_1:60511932-60511951 None:intergenic 45.0%
CGGGAACTGGAAAGAAAAAC+GGG - chr5_1:60511933-60511952 None:intergenic 45.0%
!!! GCCCCTTAAGCTAGCTTTTT+GGG - chr5_1:60513101-60513120 None:intergenic 45.0%
CGATGTGGGGTCTTAACTTA+AGG + chr5_1:60513169-60513188 Msa0741070:intron 45.0%
TAACTTAAGGTTCACGGCAC+AGG + chr5_1:60513182-60513201 Msa0741070:intron 45.0%
AACTTAAGGTTCACGGCACA+GGG + chr5_1:60513183-60513202 Msa0741070:intron 45.0%
TTCATCGTAGCTAAGGTGCA+AGG + chr5_1:60513299-60513318 Msa0741070:intron 45.0%
GCAGGATCAGCAATATGGTA+TGG - chr5_1:60513440-60513459 None:intergenic 45.0%
GAAGAGCAGGATCAGCAATA+TGG - chr5_1:60513445-60513464 None:intergenic 45.0%
TCTGGAGAATTCAGAAGAGC+AGG - chr5_1:60513458-60513477 None:intergenic 45.0%
CTACTTACAGAGCTAAGACC+AGG - chr5_1:60513503-60513522 None:intergenic 45.0%
ACGATATCGATCCCATTCCA+TGG - chr5_1:60513576-60513595 None:intergenic 45.0%
!! AGTAATGCCAGTCGTTTTCC+TGG + chr5_1:60514068-60514087 Msa0741070:CDS 45.0%
AGTCTGAATGTTTGACTGGG+AGG - chr5_1:60514241-60514260 None:intergenic 45.0%
GGGAAGTCTGAATGTTTGAC+TGG - chr5_1:60514245-60514264 None:intergenic 45.0%
TCACTCCTTTGCGCTTTCTT+TGG - chr5_1:60514356-60514375 None:intergenic 45.0%
AAACATCATGTGTGCATGCG+TGG - chr5_1:60514728-60514747 None:intergenic 45.0%
!! CTTGGTTCTATCTCAGCAAC+AGG - chr5_1:60514824-60514843 None:intergenic 45.0%
CTGTTGCTGAGATAGAACCA+AGG + chr5_1:60514822-60514841 Msa0741070:CDS 45.0%
! CCAAAACTTCTAAGAGGACG+TGG - chr5_1:60514899-60514918 None:intergenic 45.0%
! CCACGTCCTCTTAGAAGTTT+TGG + chr5_1:60514896-60514915 Msa0741070:intron 45.0%
! AAGGTGCTTCTAGTGGGATT+CGG - chr5_1:60515169-60515188 None:intergenic 45.0%
! GTAAAAAGGTATGCCCTAGC+AGG + chr5_1:60515190-60515209 Msa0741070:intron 45.0%
CAAAATCACAAGGTGTGGGA+TGG - chr5_1:60515229-60515248 None:intergenic 45.0%
GAAGGCAAAATCACAAGGTG+TGG - chr5_1:60515234-60515253 None:intergenic 45.0%
GTAGTCAAACCGAGGTTTGA+AGG - chr5_1:60515252-60515271 None:intergenic 45.0%
!! CTGTGAGGTTGGTGTGTATT+TGG - chr5_1:60515445-60515464 None:intergenic 45.0%
TCATCCTCGCTAAAGCTAGA+CGG - chr5_1:60515555-60515574 None:intergenic 45.0%
CAATCAATCCAGTGAGGAAC+TGG - chr5_1:60515589-60515608 None:intergenic 45.0%
!!! AATTTTTTAATATTTGTATT+TGG + chr5_1:60512501-60512520 Msa0741070:intron 5.0%
CAAAACGCCTGCACAGCTTA+AGG + chr5_1:60511130-60511149 Msa0741070:CDS 50.0%
TCCAATCCCTTAAGCTGTGC+AGG - chr5_1:60511140-60511159 None:intergenic 50.0%
!!! CTGGATGGTTTTGTCACCGA+AGG + chr5_1:60511324-60511343 Msa0741070:CDS 50.0%
GGACGACAAGATCGTTCAAG+CGG + chr5_1:60511389-60511408 Msa0741070:CDS 50.0%
CCGTTGCTCTCAACCTCTTT+AGG - chr5_1:60511494-60511513 None:intergenic 50.0%
GCACCTTTCGGATTTAAGGG+TGG - chr5_1:60511701-60511720 None:intergenic 50.0%
CAGGAAGATGGTCCACTACT+TGG + chr5_1:60511821-60511840 Msa0741070:CDS 50.0%
GTTTGGCATTCAAATGCCCC+AGG - chr5_1:60511869-60511888 None:intergenic 50.0%
GAGCGTGAAGTCTGCAGTAA+TGG + chr5_1:60512889-60512908 Msa0741070:intron 50.0%
!!! CGCCCCTTAAGCTAGCTTTT+TGG - chr5_1:60513102-60513121 None:intergenic 50.0%
ACCATATGCCCACTCGATGT+GGG + chr5_1:60513155-60513174 Msa0741070:intron 50.0%
GTTAAGACCCCACATCGAGT+GGG - chr5_1:60513166-60513185 None:intergenic 50.0%
AGTTAAGACCCCACATCGAG+TGG - chr5_1:60513167-60513186 None:intergenic 50.0%
TCCACAGTGAAAAGTCGACC+TGG + chr5_1:60513482-60513501 Msa0741070:CDS 50.0%
!! ACCAGGTCGACTTTTCACTG+TGG - chr5_1:60513486-60513505 None:intergenic 50.0%
TCTAAGGAAGAGTTCCTGCC+AGG - chr5_1:60514089-60514108 None:intergenic 50.0%
CCACAGAACCTCGAGAATTG+TGG - chr5_1:60514409-60514428 None:intergenic 50.0%
CCACAATTCTCGAGGTTCTG+TGG + chr5_1:60514406-60514425 Msa0741070:CDS 50.0%
AAGCAATATCGCGATGCAGG+TGG + chr5_1:60514595-60514614 Msa0741070:CDS 50.0%
ATCATGTGTGCATGCGTGGA+AGG - chr5_1:60514724-60514743 None:intergenic 50.0%
! GCTCACCTCTGAGTTTTCCT+TGG - chr5_1:60514842-60514861 None:intergenic 50.0%
! TTCTAAGAGGACGTGGGTGT+CGG - chr5_1:60514892-60514911 None:intergenic 50.0%
!! AGCGCAAAGTGCTGCTTAGT+TGG + chr5_1:60515098-60515117 Msa0741070:intron 50.0%
TGCTGATACCAGTTCCTCAC+TGG + chr5_1:60515578-60515597 Msa0741070:CDS 50.0%
GCCTGCACAGCTTAAGGGAT+TGG + chr5_1:60511136-60511155 Msa0741070:CDS 55.0%
!! TCGTTCAAGCGGTGTCATCC+AGG + chr5_1:60511400-60511419 Msa0741070:CDS 55.0%
! AGGATCGTGGCAGTGGACTT+GGG + chr5_1:60511420-60511439 Msa0741070:CDS 55.0%
GGACTTGGGCAAGATTCGTG+TGG + chr5_1:60511434-60511453 Msa0741070:CDS 55.0%
CAGATATGACGTACGGACGC+AGG + chr5_1:60511540-60511559 Msa0741070:CDS 55.0%
TCAAATGCCCCAGGAGGAAG+TGG - chr5_1:60511860-60511879 None:intergenic 55.0%
TGGCATTCAAATGCCCCAGG+AGG - chr5_1:60511866-60511885 None:intergenic 55.0%
!! ATCTCGGTTTGCTATGGGCC+TGG + chr5_1:60512107-60512126 Msa0741070:intron 55.0%
!! TCTCGGTTTGCTATGGGCCT+GGG + chr5_1:60512108-60512127 Msa0741070:intron 55.0%
!! TAGGTTCTAGGCTGGACCTC+TGG + chr5_1:60512867-60512886 Msa0741070:intron 55.0%
GACCATATGCCCACTCGATG+TGG + chr5_1:60513154-60513173 Msa0741070:intron 55.0%
CCATATGCCCACTCGATGTG+GGG + chr5_1:60513156-60513175 Msa0741070:intron 55.0%
!! ATGCCAGTCGTTTTCCTGGC+AGG + chr5_1:60514072-60514091 Msa0741070:CDS 55.0%
GTTCCTGCCAGGAAAACGAC+TGG - chr5_1:60514078-60514097 None:intergenic 55.0%
CATAGGAAGGGTTCCAAGCG+TGG + chr5_1:60514158-60514177 Msa0741070:CDS 55.0%
! GGTTCCAAGCGTGGTGTTGA+GGG + chr5_1:60514167-60514186 Msa0741070:CDS 55.0%
CATACCCTCAACACCACGCT+TGG - chr5_1:60514174-60514193 None:intergenic 55.0%
ATGTGTGCATGCGTGGAAGG+AGG - chr5_1:60514721-60514740 None:intergenic 55.0%
TCTAAGAGGACGTGGGTGTC+GGG - chr5_1:60514891-60514910 None:intergenic 55.0%
CAAGGGACACCTTGGTTAGC+TGG + chr5_1:60515346-60515365 Msa0741070:intron 55.0%
!! GATGCCGTCTAGCTTTAGCG+AGG + chr5_1:60515548-60515567 Msa0741070:CDS 55.0%
!! AGCGGTGTCATCCAGGATCG+TGG + chr5_1:60511407-60511426 Msa0741070:CDS 60.0%
GTCATCCAGGATCGTGGCAG+TGG + chr5_1:60511413-60511432 Msa0741070:CDS 60.0%
CAAGTCCACTGCCACGATCC+TGG - chr5_1:60511421-60511440 None:intergenic 60.0%
! CAGGATCGTGGCAGTGGACT+TGG + chr5_1:60511419-60511438 Msa0741070:CDS 60.0%
!! CTCGGTTTGCTATGGGCCTG+GGG + chr5_1:60512109-60512128 Msa0741070:intron 60.0%
!! GTTTGCTATGGGCCTGGGGT+AGG + chr5_1:60512113-60512132 Msa0741070:intron 60.0%
CTGCAGACTTCACGCTCCAG+AGG - chr5_1:60512886-60512905 None:intergenic 60.0%
CCCCACATCGAGTGGGCATA+TGG - chr5_1:60513159-60513178 None:intergenic 60.0%
! GGGTTCCAAGCGTGGTGTTG+AGG + chr5_1:60514166-60514185 Msa0741070:CDS 60.0%
TATCGCGATGCAGGTGGAGC+AGG + chr5_1:60514601-60514620 Msa0741070:CDS 60.0%
ATCGCGATGCAGGTGGAGCA+GGG + chr5_1:60514602-60514621 Msa0741070:CDS 60.0%
TATGGCCGCAGTCGTACGCA+AGG + chr5_1:60515328-60515347 Msa0741070:intron 60.0%
ATGGCCGCAGTCGTACGCAA+GGG + chr5_1:60515329-60515348 Msa0741070:intron 60.0%
GTGTCCCTTGCGTACGACTG+CGG - chr5_1:60515336-60515355 None:intergenic 60.0%
GTCGTACGCAAGGGACACCT+TGG + chr5_1:60515338-60515357 Msa0741070:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 60510067 60516000 60510067 ID=Msa0741070;Name=Msa0741070
chr5_1 mRNA 60510067 60516000 60510067 ID=Msa0741070-mRNA-1;Parent=Msa0741070;Name=Msa0741070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=282|1|1|1|1|1|8|395|544
chr5_1 exon 60510067 60510355 60510067 ID=Msa0741070-mRNA-1:exon:17468;Parent=Msa0741070-mRNA-1
chr5_1 exon 60511066 60511173 60511066 ID=Msa0741070-mRNA-1:exon:17469;Parent=Msa0741070-mRNA-1
chr5_1 exon 60511252 60511905 60511252 ID=Msa0741070-mRNA-1:exon:17470;Parent=Msa0741070-mRNA-1
chr5_1 exon 60513435 60513514 60513435 ID=Msa0741070-mRNA-1:exon:17471;Parent=Msa0741070-mRNA-1
chr5_1 exon 60513924 60514466 60513924 ID=Msa0741070-mRNA-1:exon:17472;Parent=Msa0741070-mRNA-1
chr5_1 exon 60514562 60514645 60514562 ID=Msa0741070-mRNA-1:exon:17473;Parent=Msa0741070-mRNA-1
chr5_1 exon 60514767 60514855 60514767 ID=Msa0741070-mRNA-1:exon:17474;Parent=Msa0741070-mRNA-1
chr5_1 exon 60515536 60516000 60515536 ID=Msa0741070-mRNA-1:exon:17475;Parent=Msa0741070-mRNA-1
chr5_1 five_prime_UTR 60510067 60510348 60510067 ID=Msa0741070-mRNA-1:five_prime_utr;Parent=Msa0741070-mRNA-1
chr5_1 CDS 60510349 60510355 60510349 ID=Msa0741070-mRNA-1:cds;Parent=Msa0741070-mRNA-1
chr5_1 CDS 60511066 60511173 60511066 ID=Msa0741070-mRNA-1:cds;Parent=Msa0741070-mRNA-1
chr5_1 CDS 60511252 60511905 60511252 ID=Msa0741070-mRNA-1:cds;Parent=Msa0741070-mRNA-1
chr5_1 CDS 60513435 60513514 60513435 ID=Msa0741070-mRNA-1:cds;Parent=Msa0741070-mRNA-1
chr5_1 CDS 60513924 60514466 60513924 ID=Msa0741070-mRNA-1:cds;Parent=Msa0741070-mRNA-1
chr5_1 CDS 60514562 60514645 60514562 ID=Msa0741070-mRNA-1:cds;Parent=Msa0741070-mRNA-1
chr5_1 CDS 60514767 60514855 60514767 ID=Msa0741070-mRNA-1:cds;Parent=Msa0741070-mRNA-1
chr5_1 CDS 60515536 60515605 60515536 ID=Msa0741070-mRNA-1:cds;Parent=Msa0741070-mRNA-1
chr5_1 three_prime_UTR 60515606 60516000 60515606 ID=Msa0741070-mRNA-1:three_prime_utr;Parent=Msa0741070-mRNA-1
Gene Sequence

>Msa0741070

ATGGAAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGTCTCTGCGGAGAAGTTTCCGAAAAGAAAGCTCAAAACGCCTGCACAGCTTAAGGGATTGGAGAAATTTTATACGGAGCACAAATATCCAACAGAGGAATTGAAATTAGCAATTGCTGAGGAGTTAGAGTTGACAGAAAAGCAAGTTTCTGGATGGTTTTGTCACCGAAGGTTAAAGGATAAAAGATTGTTGAAAGAAGAAGCAAATGCTAATGGACGACAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCGTGTGGAAGCAGTAAACATGGTGATTATAAGTATCTGGATCCTAAAGAGGTTGAGAGCAACGGCCTCTACAATCGTGATTTGTCTGTTGCAGATATGACGTACGGACGCAGGAATCATTTTTCTGAAAATGTCAGTGGAATGGATGATGACACATCATCTGAGAGTAGCTCTTATTTGCAAGAACGTTTGTATCCTCAAGGCCAAGATCCATATGAGATGGAGCCTTCTAGATATAGTAAAGCTCTTCCACCCTTAAATCCGAAAGGTGCAATCAACATGGGATATAAGCCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGAATTATCAGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCTGGGGCATTTGAATGCCAAACTGAAGATGCAGTTCATGAACCATACCATATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATCTCCACAGTGAAAAGTCGACCTGGTCTTAGCTCTAGATATGATTCATATTATACTAAACATGGTTCCCAAGATACTCATATGGAAGGAGTTGACTTTGGTTCGTTGCATGATGTTCATGTTCAGGATAAACAAGATAAGAAAGCTTTCCATGGTACCAAACATAGACAAACTTTTCAGAGTAATGCCAGTCGTTTTCCTGGCAGGAACTCTTCCTTAGATTTGTACGAAGACTCTACTGGAGAAGCTGCTTACAACATTGCTAAGAATCATAGGAAGGGTTCCAAGCGTGGTGTTGAGGGTATGAGATCTGATTCTACTTCTAACCATAGTGATCGCTATGAAGAAAACCTCCCAGTCAAACATTCAGACTTCCCACAGTATAACTATGAAAACACCAATCCAAAGAATGTGCAAAGGAGTGTTCATGCAGACATTCTTCAATATGACTATGATAATGTCAATCCAAAGAAAGCGCAAAGGAGTGAACACATGAAATCTAAACCTTCAAACTCAATCCACAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGGCTATCTTCTAGGATGACTAAGGATGAATTGTTTAAAGGGGACAGGAAGGCAAAAAAGCAATATCGCGATGCAGGTGGAGCAGGGATGCTTTCAAATGAGACTATGGTTGCAAAACGACTTAAAGCAAATACGTTTCAACCATACAATATGAAACAGGTTCCTGTTGCTGAGATAGAACCAAGGAAAACTCAGAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCTGATACCAGTTCCTCACTGGATTGA

Protein sequence

>Msa0741070

MEESSELQPEENKVSAEKFPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESNGLYNRDLSVADMTYGRRNHFSENVSGMDDDTSSESSSYLQERLYPQGQDPYEMEPSRYSKALPPLNPKGAINMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYQEDGPLLGVEFDPLPPGAFECQTEDAVHEPYHIADPALLNSPEISTVKSRPGLSSRYDSYYTKHGSQDTHMEGVDFGSLHDVHVQDKQDKKAFHGTKHRQTFQSNASRFPGRNSSLDLYEDSTGEAAYNIAKNHRKGSKRGVEGMRSDSTSNHSDRYEENLPVKHSDFPQYNYENTNPKNVQRSVHADILQYDYDNVNPKKAQRSEHMKSKPSNSIHNSRGSVDTEERGLSSRMTKDELFKGDRKAKKQYRDAGGAGMLSNETMVAKRLKANTFQPYNMKQVPVAEIEPRKTQRSAAEMPSSFSEDETADTSSSLD*