AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003090 MtrunA17_Chr1g0155781 97.802 364 8 0 1 364 1 364 0.0 750
Msa0003090 MtrunA17_Chr4g0035551 70.924 368 95 6 1 364 1 360 0.0 538
Msa0003090 MtrunA17_Chr1g0199131 53.846 364 154 4 7 364 15 370 3.00e-145 416
Msa0003090 MtrunA17_Chr4g0036731 58.939 358 100 8 8 364 13 324 3.62e-142 406
Msa0003090 MtrunA17_Chr4g0037291 57.143 357 112 7 8 364 54 369 2.55e-138 398
Msa0003090 MtrunA17_Chr4g0036281 56.098 369 116 9 1 364 1 328 4.11e-138 396
Msa0003090 MtrunA17_Chr1g0208261 42.320 319 156 9 38 345 74 375 3.21e-69 225
Msa0003090 MtrunA17_Chr4g0070441 38.292 363 190 11 9 359 7 347 2.60e-66 213
Msa0003090 MtrunA17_Chr4g0040851 38.188 309 166 8 51 352 61 351 5.39e-66 213
Msa0003090 MtrunA17_Chr4g0041061 37.366 372 171 14 1 352 7 336 9.61e-66 211
Msa0003090 MtrunA17_Chr0c27g0493921 38.764 356 184 11 9 352 7 340 1.14e-65 211
Msa0003090 MtrunA17_Chr4g0040881 37.921 356 162 13 14 352 23 336 4.41e-65 210
Msa0003090 MtrunA17_Chr4g0053311 40.468 299 150 8 57 345 41 321 7.80e-65 209
Msa0003090 MtrunA17_Chr5g0405751 38.348 339 164 11 33 352 23 335 8.25e-65 209
Msa0003090 MtrunA17_Chr3g0144281 39.365 315 166 8 51 357 47 344 8.95e-65 209
Msa0003090 MtrunA17_Chr4g0060251 40.317 315 147 11 56 352 45 336 1.45e-64 208
Msa0003090 MtrunA17_Chr3g0134231 37.322 351 188 10 5 345 13 341 2.35e-64 212
Msa0003090 MtrunA17_Chr4g0024411 39.365 315 150 11 56 352 43 334 3.16e-64 207
Msa0003090 MtrunA17_Chr3g0116551 40.604 298 149 9 67 352 55 336 1.36e-63 206
Msa0003090 MtrunA17_Chr4g0041081 38.323 334 164 12 41 357 33 341 6.65e-63 204
Msa0003090 MtrunA17_Chr4g0041521 39.803 304 159 8 56 352 45 331 6.66e-63 204
Msa0003090 MtrunA17_Chr4g0041481 38.245 319 165 9 45 352 34 331 2.65e-62 202
Msa0003090 MtrunA17_Chr2g0325121 37.584 298 164 7 51 345 39 317 2.37e-60 197
Msa0003090 MtrunA17_Chr4g0058081 39.333 300 151 11 66 352 54 335 6.24e-60 197
Msa0003090 MtrunA17_Chr3g0142071 37.695 321 168 10 51 357 50 352 1.99e-59 198
Msa0003090 MtrunA17_Chr2g0283901 37.383 321 168 11 51 357 51 352 3.96e-59 198
Msa0003090 MtrunA17_Chr2g0315491 40.065 307 148 10 60 352 48 332 5.08e-59 194
Msa0003090 MtrunA17_Chr8g0379151 36.449 321 170 12 51 356 67 368 2.95e-58 193
Msa0003090 MtrunA17_Chr4g0041471 36.156 307 171 8 56 352 42 333 2.24e-57 190
Msa0003090 MtrunA17_Chr1g0153011 36.857 350 164 12 5 345 21 322 2.55e-56 190
Msa0003090 MtrunA17_Chr2g0319991 37.048 332 170 14 44 358 31 340 7.52e-55 183
Msa0003090 MtrunA17_Chr2g0283671 45.909 220 99 8 128 345 7 208 3.05e-52 173
Msa0003090 MtrunA17_Chr2g0283741 33.230 322 175 11 51 354 53 352 1.50e-49 170
Msa0003090 MtrunA17_Chr7g0248811 32.808 317 188 8 42 352 30 327 2.00e-47 164
Msa0003090 MtrunA17_Chr8g0379671 55.556 135 46 2 176 310 23 143 1.66e-46 156
Msa0003090 MtrunA17_Chr2g0311381 31.771 384 200 17 1 359 1 347 1.40e-45 159
Msa0003090 MtrunA17_Chr7g0248391 31.790 324 193 9 36 352 27 329 3.24e-45 158
Msa0003090 MtrunA17_Chr2g0311471 32.011 378 200 13 1 357 1 342 4.01e-44 155
Msa0003090 MtrunA17_Chr1g0156161 37.838 222 118 6 133 351 47 251 8.62e-36 131
Msa0003090 MtrunA17_Chr2g0311391 28.841 371 186 15 39 358 24 367 4.96e-35 132
Msa0003090 MtrunA17_Chr2g0283751 34.632 231 122 7 62 279 64 278 1.23e-33 126
Msa0003090 MtrunA17_Chr7g0271031 26.632 383 226 14 7 357 20 379 4.04e-28 113
Msa0003090 MtrunA17_Chr7g0271041 27.157 313 183 11 75 357 38 335 3.00e-25 105
Msa0003090 MtrunA17_Chr1g0156771 46.018 113 49 3 133 242 53 156 2.22e-22 92.4
Msa0003090 MtrunA17_Chr2g0311091 36.806 144 75 4 58 185 41 184 1.88e-19 85.1
Msa0003090 MtrunA17_Chr7g0248421 35.065 154 88 4 159 311 57 199 1.98e-19 85.5
Msa0003090 MtrunA17_Chr2g0283661 29.534 193 107 5 5 188 7 179 1.02e-17 82.0
Msa0003090 MtrunA17_Chr2g0283661 34.513 113 58 5 253 361 168 268 1.65e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003090 AT4G39090.1 73.684 342 88 2 24 364 24 364 0.0 546
Msa0003090 AT2G21430.1 70.028 357 97 3 9 364 14 361 0.0 539
Msa0003090 AT4G16190.1 69.231 364 107 5 5 364 8 370 3.95e-178 499
Msa0003090 AT3G54940.2 55.942 345 141 3 29 364 24 366 8.70e-150 427
Msa0003090 AT3G54940.3 53.333 255 108 3 29 274 24 276 6.08e-99 295
Msa0003090 AT1G06260.1 42.056 321 154 12 48 357 40 339 1.17e-71 227
Msa0003090 AT5G60360.1 40.606 330 169 8 37 357 42 353 2.02e-70 224
Msa0003090 AT3G19390.1 42.903 310 146 11 60 357 52 342 1.44e-69 225
Msa0003090 AT5G60360.3 41.049 324 164 8 37 351 42 347 1.75e-69 222
Msa0003090 AT3G45310.1 38.655 357 189 10 7 352 11 348 3.20e-69 221
Msa0003090 AT5G60360.2 40.867 323 164 8 37 350 42 346 5.80e-69 221
Msa0003090 AT4G36880.1 42.321 293 135 9 67 345 69 341 7.33e-68 218
Msa0003090 AT3G45310.2 38.310 355 189 10 7 350 11 346 8.78e-68 218
Msa0003090 AT1G47128.1 42.268 291 131 8 67 345 68 333 1.59e-67 220
Msa0003090 AT4G35350.1 38.938 339 168 10 36 357 33 349 1.80e-67 217
Msa0003090 AT3G19400.1 41.100 309 155 10 60 357 53 345 4.16e-67 216
Msa0003090 AT5G43060.1 42.177 294 149 7 55 345 59 334 2.35e-66 217
Msa0003090 AT1G20850.1 40.566 318 160 9 51 357 51 350 2.10e-65 211
Msa0003090 AT3G43960.1 43.003 293 145 9 60 345 50 327 4.68e-65 211
Msa0003090 AT5G50260.1 42.140 299 145 9 66 352 52 334 7.26e-64 207
Msa0003090 AT1G09850.1 39.432 317 164 9 51 357 32 330 2.03e-63 209
Msa0003090 AT3G48340.1 38.629 321 161 9 41 345 24 324 4.34e-63 206
Msa0003090 AT4G23520.1 38.509 322 169 10 47 357 43 346 2.95e-62 203
Msa0003090 AT5G45890.1 36.164 365 181 14 7 352 6 337 7.20e-61 199
Msa0003090 AT1G29090.1 38.125 320 167 11 47 352 44 346 1.25e-59 196
Msa0003090 AT2G34080.1 36.422 313 167 10 54 352 42 336 3.87e-55 184
Msa0003090 AT3G48350.1 39.024 287 146 10 71 346 57 325 5.12e-54 182
Msa0003090 AT4G35350.2 39.921 253 134 5 36 280 33 275 8.67e-54 179
Msa0003090 AT2G27420.1 34.347 329 155 12 56 352 40 339 8.07e-51 173
Msa0003090 AT3G19400.2 41.150 226 121 5 60 280 53 271 1.20e-50 171
Msa0003090 AT4G11310.1 31.421 366 208 10 2 352 7 344 2.48e-50 172
Msa0003090 AT3G49340.1 32.698 315 182 9 54 355 38 335 7.23e-49 168
Msa0003090 AT1G29080.1 35.913 323 168 12 57 361 45 346 7.44e-49 168
Msa0003090 AT4G11320.2 31.622 370 202 12 5 352 11 351 1.11e-48 168
Msa0003090 AT4G11320.1 31.622 370 202 12 5 352 11 351 1.11e-48 168
Msa0003090 AT3G48350.2 38.813 219 115 6 71 280 57 265 9.91e-40 142
Msa0003090 AT1G29110.1 31.304 345 183 15 28 352 15 325 7.41e-37 136
Msa0003090 AT4G01610.1 29.375 320 174 15 64 353 34 331 5.11e-24 102
Msa0003090 AT4G01610.2 28.750 320 176 15 64 353 34 331 5.10e-22 96.3
Msa0003090 AT1G02305.1 29.861 288 154 12 98 356 69 337 9.85e-22 95.5
Msa0003090 AT1G02300.1 26.710 307 159 13 98 356 66 354 5.88e-17 81.6

Find 94 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTCCGTCGTCAGTTTCT+TGG 0.223807 1_1:+5595281 Msa0003090:CDS
TTTGGAAGGAGCAAATTATT+TGG 0.286718 1_1:+5595591 Msa0003090:CDS
GATTGAAGGAAAAGCCTTAC+TGG 0.291151 1_1:+5597227 Msa0003090:CDS
ATCCTTCCTCACCCCAATTC+TGG 0.294023 1_1:-5597270 None:intergenic
AGAATTCATGGGGCCAGAAT+TGG 0.303276 1_1:+5597257 Msa0003090:CDS
GAAGAACATGATTACCGATT+TGG 0.310705 1_1:+5595161 Msa0003090:CDS
GTAAAGAATGGCCCTCTTGC+AGG 0.324125 1_1:+5596926 Msa0003090:CDS
GAACAAACGTCTCCGTTTAC+CGG 0.333947 1_1:+5595307 Msa0003090:CDS
TTACTAGATTTGCAGCAATT+TGG 0.338194 1_1:-5596907 None:intergenic
GATCATGGGGTTCTTCTAGT+TGG 0.348875 1_1:+5597175 Msa0003090:CDS
GGGGTTCTTCTAGTTGGTTT+TGG 0.352074 1_1:+5597181 Msa0003090:CDS
GAATTCATGGGGCCAGAATT+GGG 0.378415 1_1:+5597258 Msa0003090:CDS
GCGCAGAAGGATCAAGCTTC+TGG 0.386901 1_1:-5595220 None:intergenic
GAACTCAGACGCCGTTAAAT+CGG 0.390963 1_1:-5595264 None:intergenic
CATCTGTGCCAAAGCACGTT+TGG 0.391375 1_1:+5597153 Msa0003090:CDS
ACTGGATCATAAAGAATTCA+TGG 0.401274 1_1:+5597245 Msa0003090:CDS
TTCGAATACATACTCCAGTC+TGG 0.403345 1_1:+5596767 Msa0003090:CDS
CGTGCTTTGGCACAGATGTA+TGG 0.406234 1_1:-5597148 None:intergenic
CCCATGATCCAAACGTGCTT+TGG 0.406480 1_1:-5597161 None:intergenic
GGGTTCATGCGGTTCGTGTT+GGG 0.409026 1_1:+5595549 Msa0003090:intron
CTTGCAGGATCCATCTCTTC+CGG 0.413354 1_1:-5596822 None:intergenic
AGGGTTCATGCGGTTCGTGT+TGG 0.415010 1_1:+5595548 Msa0003090:intron
TCGCGCCAATCAAAATCCTC+TGG 0.420389 1_1:-5595371 None:intergenic
CCAAAGCACGTTTGGATCAT+GGG 0.425598 1_1:+5597161 Msa0003090:CDS
CTATGCTCCCATTCGATTGA+AGG 0.426934 1_1:+5597213 Msa0003090:CDS
AATCCACTCCACATACATTT+CGG 0.439462 1_1:-5597312 None:intergenic
CGTCACTCCCGTCAAGGATC+AGG 0.443966 1_1:+5595403 Msa0003090:CDS
GCCAAAGCACGTTTGGATCA+TGG 0.451166 1_1:+5597160 Msa0003090:CDS
AACGACACTGAAGTTAGATA+TGG 0.454252 1_1:-5596870 None:intergenic
GAATTCTTTATGATCCAGTA+AGG 0.473251 1_1:-5597241 None:intergenic
TCTGAGCGTGAGCCGGTAAA+CGG 0.474751 1_1:-5595319 None:intergenic
GGAGCAAATTATTTGGCGAC+TGG 0.478944 1_1:+5595598 Msa0003090:CDS
TTGATTTGAACACGCCAAAT+CGG 0.479498 1_1:-5595175 None:intergenic
AACAATTAGCTACCTGCAAG+AGG 0.483963 1_1:-5596938 None:intergenic
GTGATTCCGTGTTGCGCAGA+AGG 0.484794 1_1:-5595233 None:intergenic
CAGCGGTGTCGACGACTTGT+CGG 0.487131 1_1:-5595064 None:intergenic
TCACAAGAATTACGTTCCTC+TGG 0.490836 1_1:-5596710 None:intergenic
CGCGCCAATCAAAATCCTCT+GGG 0.504763 1_1:-5595370 None:intergenic
CTGGATCATAAAGAATTCAT+GGG 0.512632 1_1:+5597246 Msa0003090:CDS
ATCGTCGGAGTTGGTGTCAT+CGG 0.513790 1_1:-5595033 None:intergenic
GCTGCAAATCTAGTAAAGAA+TGG 0.519363 1_1:+5596914 Msa0003090:CDS
GATGAGAAGATCGTCGGAGT+TGG 0.521387 1_1:-5595042 None:intergenic
TCTTAGTGAGCAACAGCTTG+TGG 0.523786 1_1:+5595633 Msa0003090:CDS
TCGAATACATACTCCAGTCT+GGG 0.524172 1_1:+5596768 Msa0003090:CDS
GATACATGCCTGATCCTTGA+CGG 0.527318 1_1:-5595411 None:intergenic
TTGTGCGGCGGTTGCAACAG+CGG 0.528593 1_1:-5595003 None:intergenic
GGAGTTGGTGTCATCGGAGA+GGG 0.533186 1_1:-5595027 None:intergenic
GAACGTAATTCTTGTGACTC+TGG 0.537907 1_1:+5596716 Msa0003090:CDS
AGATTGTTAGTAGGAAGAAT+CGG 0.540576 1_1:-5595347 None:intergenic
ATCGGAGAGGGTTTGTGCGG+CGG 0.540988 1_1:-5595015 None:intergenic
TATGCTTACACCGGAAGAGA+TGG 0.544908 1_1:+5596812 Msa0003090:CDS
GTGCTTTGGCACAGATGTAT+GGG 0.545478 1_1:-5597147 None:intergenic
GGCCAGAATTGGGGTGAGGA+AGG 0.548238 1_1:+5597268 Msa0003090:CDS
TGTGACTCTGGCTGTAACGG+TGG 0.548240 1_1:+5596728 Msa0003090:CDS
GGAGCCTTCTGAGCGTGAGC+CGG 0.555112 1_1:-5595326 None:intergenic
AGTACAACTGGAGCTTTGGA+AGG 0.555301 1_1:+5595577 Msa0003090:CDS
TCCTCTGGGAGATTGTTAGT+AGG 0.556352 1_1:-5595356 None:intergenic
TCTTGTGACTCTGGCTGTAA+CGG 0.557182 1_1:+5596725 Msa0003090:CDS
TGCAGAGGCCGAAATGTATG+TGG 0.559622 1_1:+5597304 Msa0003090:CDS
CGGTTGCAACAGCGGCGAAG+AGG 0.560629 1_1:-5594995 None:intergenic
AATTCATGGGGCCAGAATTG+GGG 0.569604 1_1:+5597259 Msa0003090:CDS
TTTACCGGCTCACGCTCAGA+AGG 0.571687 1_1:+5595322 Msa0003090:CDS
ATACATGCCTGATCCTTGAC+GGG 0.580358 1_1:-5595410 None:intergenic
GAGCAAATTATTTGGCGACT+GGG 0.581395 1_1:+5595599 Msa0003090:CDS
ATGGGGCCAGAATTGGGGTG+AGG 0.585321 1_1:+5597264 Msa0003090:CDS
CTGATCCTTGACGGGAGTGA+CGG 0.594529 1_1:-5595402 None:intergenic
AGATTGAGCTGCAGCAACAG+TGG 0.595282 1_1:-5597344 None:intergenic
TGGTGTGATTAGGGTTCATG+CGG 0.605339 1_1:+5595538 Msa0003090:intron
CTTGATCCTTCTGCGCAACA+CGG 0.608322 1_1:+5595227 Msa0003090:CDS
AGGTGCCGTCACTCCCGTCA+AGG 0.610158 1_1:+5595397 Msa0003090:CDS
GAGTGCGATGAGGAAACGAT+GGG 0.610185 1_1:-5594970 None:intergenic
AGAGTGCGATGAGGAAACGA+TGG 0.615222 1_1:-5594971 None:intergenic
CAAAGCACGTTTGGATCATG+GGG 0.618631 1_1:+5597162 Msa0003090:CDS
AGGCCGAAATGTATGTGGAG+TGG 0.625354 1_1:+5597309 Msa0003090:CDS
TTGTCGGATGAGAAGATCGT+CGG 0.630035 1_1:-5595048 None:intergenic
GATGAGGAAACGATGGGCCA+TGG 0.632658 1_1:-5594964 None:intergenic
CGAATACATACTCCAGTCTG+GGG 0.633443 1_1:+5596769 Msa0003090:CDS
GTTTAGTATGTGATCTTCAG+CGG 0.633912 1_1:-5595081 None:intergenic
TGCAGCAACAGTGGAGACCA+TGG 0.639409 1_1:-5597335 None:intergenic
GGATATTATAAGATCTGCAG+AGG 0.643121 1_1:+5597289 Msa0003090:CDS
AATCTTGCAGTGTGATCCAG+AGG 0.643554 1_1:+5596694 Msa0003090:intron
GTCATCGGAGAGGGTTTGTG+CGG 0.646567 1_1:-5595018 None:intergenic
CGGAGTTGGTGTCATCGGAG+AGG 0.647919 1_1:-5595028 None:intergenic
TGTATGTGGAGTGGATTCCA+TGG 0.649722 1_1:+5597318 Msa0003090:CDS
ACAATTAGCTACCTGCAAGA+GGG 0.660807 1_1:-5596937 None:intergenic
GCTTGTGGATTGTGATCATG+TGG 0.675150 1_1:+5595648 Msa0003090:CDS
GAAAAGGACTATGCTTACAC+CGG 0.677300 1_1:+5596803 Msa0003090:CDS
CGAAGAGGAAGAGTGCGATG+AGG 0.679065 1_1:-5594980 None:intergenic
TCCTACTAACAATCTCCCAG+AGG 0.684912 1_1:+5595355 Msa0003090:CDS
TGGATCATAAAGAATTCATG+GGG 0.698117 1_1:+5597247 Msa0003090:CDS
GAATACATACTCCAGTCTGG+GGG 0.711512 1_1:+5596770 Msa0003090:CDS
CAGTTGCTATCAATGCTGCG+TGG 0.724510 1_1:+5597095 Msa0003090:intron
TGGATGCAGACATATATGAG+TGG 0.766052 1_1:+5597115 Msa0003090:CDS
TCAGTCCAAGAAACTGACGA+CGG 0.796203 1_1:-5595286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTAATTTTCTTTTATATT+TGG + chr1_1:5595436-5595455 Msa0003090:intron 10.0%
!! AACAAAAATTTAAACAAAAA+AGG - chr1_1:5595698-5595717 None:intergenic 10.0%
!! TTTGTTTATTTATTTAAATG+TGG + chr1_1:5595881-5595900 Msa0003090:intron 10.0%
!! AGCATAAATAATAATAATTA+TGG - chr1_1:5596484-5596503 None:intergenic 10.0%
!!! TACTAATTTTCTTTTATATT+TGG + chr1_1:5595436-5595455 Msa0003090:intron 10.0%
!! AACAAAAATTTAAACAAAAA+AGG - chr1_1:5595698-5595717 None:intergenic 10.0%
!! TTTGTTTATTTATTTAAATG+TGG + chr1_1:5595881-5595900 Msa0003090:intron 10.0%
!! AGCATAAATAATAATAATTA+TGG - chr1_1:5596484-5596503 None:intergenic 10.0%
!!! ATTTTCTTTTATATTTGGAA+CGG + chr1_1:5595441-5595460 Msa0003090:intron 15.0%
!! AATTGAATTGAATCAATAAT+TGG + chr1_1:5595785-5595804 Msa0003090:intron 15.0%
!! AATAATAATAATTATGGATG+AGG - chr1_1:5596478-5596497 None:intergenic 15.0%
!! AAACAAAAACATCAAAATAA+GGG - chr1_1:5596534-5596553 None:intergenic 15.0%
!! TAAACAAAAACATCAAAATA+AGG - chr1_1:5596535-5596554 None:intergenic 15.0%
!!! TTAATTTTATAGTGATGTAA+AGG + chr1_1:5596552-5596571 Msa0003090:intron 15.0%
!!! TATCTTTTAGCATAAAAAAA+TGG - chr1_1:5596632-5596651 None:intergenic 15.0%
!! AATTCGTATCATAAAAATTA+GGG - chr1_1:5597032-5597051 None:intergenic 15.0%
!!! ATTTTCTTTTATATTTGGAA+CGG + chr1_1:5595441-5595460 Msa0003090:intron 15.0%
!! AATTGAATTGAATCAATAAT+TGG + chr1_1:5595785-5595804 Msa0003090:intron 15.0%
!! AATAATAATAATTATGGATG+AGG - chr1_1:5596478-5596497 None:intergenic 15.0%
!! AAACAAAAACATCAAAATAA+GGG - chr1_1:5596534-5596553 None:intergenic 15.0%
!! TAAACAAAAACATCAAAATA+AGG - chr1_1:5596535-5596554 None:intergenic 15.0%
!!! TTAATTTTATAGTGATGTAA+AGG + chr1_1:5596552-5596571 Msa0003090:intron 15.0%
!!! TATCTTTTAGCATAAAAAAA+TGG - chr1_1:5596632-5596651 None:intergenic 15.0%
!! AATTCGTATCATAAAAATTA+GGG - chr1_1:5597032-5597051 None:intergenic 15.0%
!! TTAATGATTAAGCATGATTA+TGG + chr1_1:5595488-5595507 Msa0003090:intron 20.0%
!!! ATTGATGATTTGTTTTGATT+TGG + chr1_1:5595518-5595537 Msa0003090:intron 20.0%
!!! TTTGTTTAAATTTTTGTTGC+AGG + chr1_1:5595700-5595719 Msa0003090:intron 20.0%
!! TTCAATTCAATTCATGAATT+AGG - chr1_1:5595777-5595796 None:intergenic 20.0%
!!! AGTACTTTCATTTTTAAAGA+TGG + chr1_1:5596247-5596266 Msa0003090:intron 20.0%
!! GTAATAATCATAATCAAAAG+AGG - chr1_1:5596383-5596402 None:intergenic 20.0%
!! AACAAAAACATCAAAATAAG+GGG - chr1_1:5596533-5596552 None:intergenic 20.0%
!! CATTAATTAATATACATCGA+TGG - chr1_1:5596668-5596687 None:intergenic 20.0%
!! CATCGATGTATATTAATTAA+TGG + chr1_1:5596666-5596685 Msa0003090:intron 20.0%
!! CAATTCGTATCATAAAAATT+AGG - chr1_1:5597033-5597052 None:intergenic 20.0%
!! TTAATGATTAAGCATGATTA+TGG + chr1_1:5595488-5595507 Msa0003090:intron 20.0%
!!! ATTGATGATTTGTTTTGATT+TGG + chr1_1:5595518-5595537 Msa0003090:intron 20.0%
!!! TTTGTTTAAATTTTTGTTGC+AGG + chr1_1:5595700-5595719 Msa0003090:intron 20.0%
!! TTCAATTCAATTCATGAATT+AGG - chr1_1:5595777-5595796 None:intergenic 20.0%
!!! AGTACTTTCATTTTTAAAGA+TGG + chr1_1:5596247-5596266 Msa0003090:intron 20.0%
!! GTAATAATCATAATCAAAAG+AGG - chr1_1:5596383-5596402 None:intergenic 20.0%
!! AACAAAAACATCAAAATAAG+GGG - chr1_1:5596533-5596552 None:intergenic 20.0%
!! CATTAATTAATATACATCGA+TGG - chr1_1:5596668-5596687 None:intergenic 20.0%
!! CATCGATGTATATTAATTAA+TGG + chr1_1:5596666-5596685 Msa0003090:intron 20.0%
!! CAATTCGTATCATAAAAATT+AGG - chr1_1:5597033-5597052 None:intergenic 20.0%
!! CACTAAATTTTCCGATTTAA+CGG + chr1_1:5595253-5595272 Msa0003090:CDS 25.0%
!!! TCTTTTTATTTTGGTGTGTA+TGG + chr1_1:5595724-5595743 Msa0003090:intron 25.0%
! GTTTGTGGTTATTATTTGTT+TGG + chr1_1:5595746-5595765 Msa0003090:intron 25.0%
!!! AATTTGTTAATCCAAAGAGA+TGG + chr1_1:5595976-5595995 Msa0003090:intron 25.0%
! GACTCTAATTATTGTAAAGA+GGG - chr1_1:5596309-5596328 None:intergenic 25.0%
! AGACTCTAATTATTGTAAAG+AGG - chr1_1:5596310-5596329 None:intergenic 25.0%
! TAATTAATATACATCGATGG+TGG - chr1_1:5596665-5596684 None:intergenic 25.0%
!! AAGTCGGTATTTCTATAATT+AGG - chr1_1:5597060-5597079 None:intergenic 25.0%
!! CACTAAATTTTCCGATTTAA+CGG + chr1_1:5595253-5595272 Msa0003090:CDS 25.0%
!!! TCTTTTTATTTTGGTGTGTA+TGG + chr1_1:5595724-5595743 Msa0003090:intron 25.0%
! GTTTGTGGTTATTATTTGTT+TGG + chr1_1:5595746-5595765 Msa0003090:intron 25.0%
!!! AATTTGTTAATCCAAAGAGA+TGG + chr1_1:5595976-5595995 Msa0003090:intron 25.0%
! GACTCTAATTATTGTAAAGA+GGG - chr1_1:5596309-5596328 None:intergenic 25.0%
! AGACTCTAATTATTGTAAAG+AGG - chr1_1:5596310-5596329 None:intergenic 25.0%
! TAATTAATATACATCGATGG+TGG - chr1_1:5596665-5596684 None:intergenic 25.0%
!! AAGTCGGTATTTCTATAATT+AGG - chr1_1:5597060-5597079 None:intergenic 25.0%
AGATTGTTAGTAGGAAGAAT+CGG - chr1_1:5595350-5595369 None:intergenic 30.0%
!!! TGTTTTGATTTGGTGTGATT+AGG + chr1_1:5595528-5595547 Msa0003090:intron 30.0%
!!! GTTTTGATTTGGTGTGATTA+GGG + chr1_1:5595529-5595548 Msa0003090:intron 30.0%
TTTGGAAGGAGCAAATTATT+TGG + chr1_1:5595591-5595610 Msa0003090:CDS 30.0%
!! GTTGCAGGTTCTTTTTATTT+TGG + chr1_1:5595715-5595734 Msa0003090:intron 30.0%
TTCTTCAGATGTTCTGTTAT+TGG + chr1_1:5595821-5595840 Msa0003090:intron 30.0%
! TTAAATGTGGATTACAAACC+TGG + chr1_1:5595894-5595913 Msa0003090:intron 30.0%
!!! TGGAACCATTTGTTTTAGAA+TGG + chr1_1:5595996-5596015 Msa0003090:intron 30.0%
!! GACAACCATTCTAAAACAAA+TGG - chr1_1:5596004-5596023 None:intergenic 30.0%
GATCATAATGTGTTCCTATA+TGG + chr1_1:5596092-5596111 Msa0003090:intron 30.0%
! TTCTTCTTAAGCTGTTTCAA+CGG + chr1_1:5596165-5596184 Msa0003090:intron 30.0%
TTATGGATGAGGATAAAACT+CGG - chr1_1:5596467-5596486 None:intergenic 30.0%
TTACTAGATTTGCAGCAATT+TGG - chr1_1:5596910-5596929 None:intergenic 30.0%
GAATTCTTTATGATCCAGTA+AGG - chr1_1:5597244-5597263 None:intergenic 30.0%
ACTGGATCATAAAGAATTCA+TGG + chr1_1:5597245-5597264 Msa0003090:CDS 30.0%
CTGGATCATAAAGAATTCAT+GGG + chr1_1:5597246-5597265 Msa0003090:CDS 30.0%
TGGATCATAAAGAATTCATG+GGG + chr1_1:5597247-5597266 Msa0003090:CDS 30.0%
AGATTGTTAGTAGGAAGAAT+CGG - chr1_1:5595350-5595369 None:intergenic 30.0%
!!! TGTTTTGATTTGGTGTGATT+AGG + chr1_1:5595528-5595547 Msa0003090:intron 30.0%
!!! GTTTTGATTTGGTGTGATTA+GGG + chr1_1:5595529-5595548 Msa0003090:intron 30.0%
TTTGGAAGGAGCAAATTATT+TGG + chr1_1:5595591-5595610 Msa0003090:CDS 30.0%
!! GTTGCAGGTTCTTTTTATTT+TGG + chr1_1:5595715-5595734 Msa0003090:intron 30.0%
TTCTTCAGATGTTCTGTTAT+TGG + chr1_1:5595821-5595840 Msa0003090:intron 30.0%
! TTAAATGTGGATTACAAACC+TGG + chr1_1:5595894-5595913 Msa0003090:intron 30.0%
!!! TGGAACCATTTGTTTTAGAA+TGG + chr1_1:5595996-5596015 Msa0003090:intron 30.0%
!! GACAACCATTCTAAAACAAA+TGG - chr1_1:5596004-5596023 None:intergenic 30.0%
GATCATAATGTGTTCCTATA+TGG + chr1_1:5596092-5596111 Msa0003090:intron 30.0%
! TTCTTCTTAAGCTGTTTCAA+CGG + chr1_1:5596165-5596184 Msa0003090:intron 30.0%
TTATGGATGAGGATAAAACT+CGG - chr1_1:5596467-5596486 None:intergenic 30.0%
TTACTAGATTTGCAGCAATT+TGG - chr1_1:5596910-5596929 None:intergenic 30.0%
GAATTCTTTATGATCCAGTA+AGG - chr1_1:5597244-5597263 None:intergenic 30.0%
ACTGGATCATAAAGAATTCA+TGG + chr1_1:5597245-5597264 Msa0003090:CDS 30.0%
CTGGATCATAAAGAATTCAT+GGG + chr1_1:5597246-5597265 Msa0003090:CDS 30.0%
TGGATCATAAAGAATTCATG+GGG + chr1_1:5597247-5597266 Msa0003090:CDS 30.0%
GTTTAGTATGTGATCTTCAG+CGG - chr1_1:5595084-5595103 None:intergenic 35.0%
! GAAGAACATGATTACCGATT+TGG + chr1_1:5595161-5595180 Msa0003090:CDS 35.0%
! TTGATTTGAACACGCCAAAT+CGG - chr1_1:5595178-5595197 None:intergenic 35.0%
! TTTTAGTACAACTGGAGCTT+TGG + chr1_1:5595573-5595592 Msa0003090:CDS 35.0%
!! ATTTTGGTGTGTATGGTTTG+TGG + chr1_1:5595731-5595750 Msa0003090:intron 35.0%
ACTGAATTGAACCAACATCT+TGG + chr1_1:5595920-5595939 Msa0003090:intron 35.0%
AACAAATGGTTCCATCTCTT+TGG - chr1_1:5595990-5596009 None:intergenic 35.0%
GATTCAACTCTACTCCATAT+AGG - chr1_1:5596109-5596128 None:intergenic 35.0%
TAAGAAGAATCCAACCAAAC+AGG - chr1_1:5596154-5596173 None:intergenic 35.0%
! TCTTCTTAAGCTGTTTCAAC+GGG + chr1_1:5596166-5596185 Msa0003090:intron 35.0%
!!! GACTGAGTTTTTTAAACCTG+AGG + chr1_1:5596424-5596443 Msa0003090:intron 35.0%
TTTAAACCTGAGGTCAAAGA+TGG + chr1_1:5596434-5596453 Msa0003090:intron 35.0%
TTAAACCTGAGGTCAAAGAT+GGG + chr1_1:5596435-5596454 Msa0003090:intron 35.0%
ACATGAGAATACAACAAGCA+TGG - chr1_1:5596604-5596623 None:intergenic 35.0%
AACGACACTGAAGTTAGATA+TGG - chr1_1:5596873-5596892 None:intergenic 35.0%
GCTGCAAATCTAGTAAAGAA+TGG + chr1_1:5596914-5596933 Msa0003090:CDS 35.0%
!! ATACCGACTTATGCTTTGTT+TGG + chr1_1:5597070-5597089 Msa0003090:intron 35.0%
GGATATTATAAGATCTGCAG+AGG + chr1_1:5597289-5597308 Msa0003090:CDS 35.0%
AATCCACTCCACATACATTT+CGG - chr1_1:5597315-5597334 None:intergenic 35.0%
GTTTAGTATGTGATCTTCAG+CGG - chr1_1:5595084-5595103 None:intergenic 35.0%
! GAAGAACATGATTACCGATT+TGG + chr1_1:5595161-5595180 Msa0003090:CDS 35.0%
! TTGATTTGAACACGCCAAAT+CGG - chr1_1:5595178-5595197 None:intergenic 35.0%
! TTTTAGTACAACTGGAGCTT+TGG + chr1_1:5595573-5595592 Msa0003090:CDS 35.0%
!! ATTTTGGTGTGTATGGTTTG+TGG + chr1_1:5595731-5595750 Msa0003090:intron 35.0%
ACTGAATTGAACCAACATCT+TGG + chr1_1:5595920-5595939 Msa0003090:intron 35.0%
AACAAATGGTTCCATCTCTT+TGG - chr1_1:5595990-5596009 None:intergenic 35.0%
GATTCAACTCTACTCCATAT+AGG - chr1_1:5596109-5596128 None:intergenic 35.0%
TAAGAAGAATCCAACCAAAC+AGG - chr1_1:5596154-5596173 None:intergenic 35.0%
! TCTTCTTAAGCTGTTTCAAC+GGG + chr1_1:5596166-5596185 Msa0003090:intron 35.0%
!!! GACTGAGTTTTTTAAACCTG+AGG + chr1_1:5596424-5596443 Msa0003090:intron 35.0%
TTTAAACCTGAGGTCAAAGA+TGG + chr1_1:5596434-5596453 Msa0003090:intron 35.0%
TTAAACCTGAGGTCAAAGAT+GGG + chr1_1:5596435-5596454 Msa0003090:intron 35.0%
ACATGAGAATACAACAAGCA+TGG - chr1_1:5596604-5596623 None:intergenic 35.0%
AACGACACTGAAGTTAGATA+TGG - chr1_1:5596873-5596892 None:intergenic 35.0%
GCTGCAAATCTAGTAAAGAA+TGG + chr1_1:5596914-5596933 Msa0003090:CDS 35.0%
!! ATACCGACTTATGCTTTGTT+TGG + chr1_1:5597070-5597089 Msa0003090:intron 35.0%
GGATATTATAAGATCTGCAG+AGG + chr1_1:5597289-5597308 Msa0003090:CDS 35.0%
AATCCACTCCACATACATTT+CGG - chr1_1:5597315-5597334 None:intergenic 35.0%
!! ATCTCCCAGAGGATTTTGAT+TGG + chr1_1:5595366-5595385 Msa0003090:CDS 40.0%
! TGTTGGGCTTTTAGTACAAC+TGG + chr1_1:5595565-5595584 Msa0003090:CDS 40.0%
GAGCAAATTATTTGGCGACT+GGG + chr1_1:5595599-5595618 Msa0003090:CDS 40.0%
TTGGTTCAATTCAGTTCACC+AGG - chr1_1:5595915-5595934 None:intergenic 40.0%
AACCAACATCTTGGTTGAGT+TGG + chr1_1:5595929-5595948 Msa0003090:intron 40.0%
AACCAACTCAACCAAGATGT+TGG - chr1_1:5595934-5595953 None:intergenic 40.0%
!! CATCTTGGTTGAGTTGGTTA+TGG + chr1_1:5595935-5595954 Msa0003090:intron 40.0%
!! TGGTTGAGTTGGTTATGGTT+TGG + chr1_1:5595940-5595959 Msa0003090:intron 40.0%
!! GGTTGAGTTGGTTATGGTTT+GGG + chr1_1:5595941-5595960 Msa0003090:intron 40.0%
TGGAGTAGAGTTGAATCACT+TGG + chr1_1:5596112-5596131 Msa0003090:intron 40.0%
AAGAATCCAACCAAACAGGT+AGG - chr1_1:5596150-5596169 None:intergenic 40.0%
TAGAGTCTGAGAAAGACTTG+AGG + chr1_1:5596322-5596341 Msa0003090:intron 40.0%
CTTGAGGACTTCCTTAAGAT+CGG + chr1_1:5596338-5596357 Msa0003090:intron 40.0%
! ACTTCCTTAAGATCGGTTCT+GGG + chr1_1:5596345-5596364 Msa0003090:intron 40.0%
TCACAAGAATTACGTTCCTC+TGG - chr1_1:5596713-5596732 None:intergenic 40.0%
GAACGTAATTCTTGTGACTC+TGG + chr1_1:5596716-5596735 Msa0003090:CDS 40.0%
TTCGAATACATACTCCAGTC+TGG + chr1_1:5596767-5596786 Msa0003090:CDS 40.0%
TCGAATACATACTCCAGTCT+GGG + chr1_1:5596768-5596787 Msa0003090:CDS 40.0%
GAAAAGGACTATGCTTACAC+CGG + chr1_1:5596803-5596822 Msa0003090:CDS 40.0%
!! CTTGCTTTTGTCAAACTTGC+AGG - chr1_1:5596840-5596859 None:intergenic 40.0%
ACAATTAGCTACCTGCAAGA+GGG - chr1_1:5596940-5596959 None:intergenic 40.0%
AACAATTAGCTACCTGCAAG+AGG - chr1_1:5596941-5596960 None:intergenic 40.0%
GCACCAAACAAAGCATAAGT+CGG - chr1_1:5597076-5597095 None:intergenic 40.0%
TGGATGCAGACATATATGAG+TGG + chr1_1:5597115-5597134 Msa0003090:CDS 40.0%
! GGCTTTTCCTTCAATCGAAT+GGG - chr1_1:5597223-5597242 None:intergenic 40.0%
! AGGCTTTTCCTTCAATCGAA+TGG - chr1_1:5597224-5597243 None:intergenic 40.0%
GATTGAAGGAAAAGCCTTAC+TGG + chr1_1:5597227-5597246 Msa0003090:CDS 40.0%
!! ATCTCCCAGAGGATTTTGAT+TGG + chr1_1:5595366-5595385 Msa0003090:CDS 40.0%
! TGTTGGGCTTTTAGTACAAC+TGG + chr1_1:5595565-5595584 Msa0003090:CDS 40.0%
GAGCAAATTATTTGGCGACT+GGG + chr1_1:5595599-5595618 Msa0003090:CDS 40.0%
TTGGTTCAATTCAGTTCACC+AGG - chr1_1:5595915-5595934 None:intergenic 40.0%
AACCAACATCTTGGTTGAGT+TGG + chr1_1:5595929-5595948 Msa0003090:intron 40.0%
AACCAACTCAACCAAGATGT+TGG - chr1_1:5595934-5595953 None:intergenic 40.0%
!! CATCTTGGTTGAGTTGGTTA+TGG + chr1_1:5595935-5595954 Msa0003090:intron 40.0%
!! TGGTTGAGTTGGTTATGGTT+TGG + chr1_1:5595940-5595959 Msa0003090:intron 40.0%
!! GGTTGAGTTGGTTATGGTTT+GGG + chr1_1:5595941-5595960 Msa0003090:intron 40.0%
TGGAGTAGAGTTGAATCACT+TGG + chr1_1:5596112-5596131 Msa0003090:intron 40.0%
AAGAATCCAACCAAACAGGT+AGG - chr1_1:5596150-5596169 None:intergenic 40.0%
TAGAGTCTGAGAAAGACTTG+AGG + chr1_1:5596322-5596341 Msa0003090:intron 40.0%
CTTGAGGACTTCCTTAAGAT+CGG + chr1_1:5596338-5596357 Msa0003090:intron 40.0%
! ACTTCCTTAAGATCGGTTCT+GGG + chr1_1:5596345-5596364 Msa0003090:intron 40.0%
TCACAAGAATTACGTTCCTC+TGG - chr1_1:5596713-5596732 None:intergenic 40.0%
GAACGTAATTCTTGTGACTC+TGG + chr1_1:5596716-5596735 Msa0003090:CDS 40.0%
TTCGAATACATACTCCAGTC+TGG + chr1_1:5596767-5596786 Msa0003090:CDS 40.0%
TCGAATACATACTCCAGTCT+GGG + chr1_1:5596768-5596787 Msa0003090:CDS 40.0%
GAAAAGGACTATGCTTACAC+CGG + chr1_1:5596803-5596822 Msa0003090:CDS 40.0%
!! CTTGCTTTTGTCAAACTTGC+AGG - chr1_1:5596840-5596859 None:intergenic 40.0%
ACAATTAGCTACCTGCAAGA+GGG - chr1_1:5596940-5596959 None:intergenic 40.0%
AACAATTAGCTACCTGCAAG+AGG - chr1_1:5596941-5596960 None:intergenic 40.0%
GCACCAAACAAAGCATAAGT+CGG - chr1_1:5597076-5597095 None:intergenic 40.0%
TGGATGCAGACATATATGAG+TGG + chr1_1:5597115-5597134 Msa0003090:CDS 40.0%
! GGCTTTTCCTTCAATCGAAT+GGG - chr1_1:5597223-5597242 None:intergenic 40.0%
! AGGCTTTTCCTTCAATCGAA+TGG - chr1_1:5597224-5597243 None:intergenic 40.0%
GATTGAAGGAAAAGCCTTAC+TGG + chr1_1:5597227-5597246 Msa0003090:CDS 40.0%
TTGTCGGATGAGAAGATCGT+CGG - chr1_1:5595051-5595070 None:intergenic 45.0%
GAACTCAGACGCCGTTAAAT+CGG - chr1_1:5595267-5595286 None:intergenic 45.0%
TCAGTCCAAGAAACTGACGA+CGG - chr1_1:5595289-5595308 None:intergenic 45.0%
GAACAAACGTCTCCGTTTAC+CGG + chr1_1:5595307-5595326 Msa0003090:CDS 45.0%
TCCTACTAACAATCTCCCAG+AGG + chr1_1:5595355-5595374 Msa0003090:CDS 45.0%
! TCCTCTGGGAGATTGTTAGT+AGG - chr1_1:5595359-5595378 None:intergenic 45.0%
!!! GATTTTGATTGGCGCGAGAA+AGG + chr1_1:5595377-5595396 Msa0003090:CDS 45.0%
ATACATGCCTGATCCTTGAC+GGG - chr1_1:5595413-5595432 None:intergenic 45.0%
GATACATGCCTGATCCTTGA+CGG - chr1_1:5595414-5595433 None:intergenic 45.0%
TGGTGTGATTAGGGTTCATG+CGG + chr1_1:5595538-5595557 Msa0003090:intron 45.0%
!! AGTACAACTGGAGCTTTGGA+AGG + chr1_1:5595577-5595596 Msa0003090:CDS 45.0%
GGAGCAAATTATTTGGCGAC+TGG + chr1_1:5595598-5595617 Msa0003090:CDS 45.0%
TCTTAGTGAGCAACAGCTTG+TGG + chr1_1:5595633-5595652 Msa0003090:CDS 45.0%
! GCTTGTGGATTGTGATCATG+TGG + chr1_1:5595648-5595667 Msa0003090:CDS 45.0%
TGCAATGAGTCCTACCTGTT+TGG + chr1_1:5596137-5596156 Msa0003090:intron 45.0%
ATGAGTCCTACCTGTTTGGT+TGG + chr1_1:5596141-5596160 Msa0003090:intron 45.0%
AAAGAGGGAGTGAGCACTTT+AGG - chr1_1:5596294-5596313 None:intergenic 45.0%
! GACTTCCTTAAGATCGGTTC+TGG + chr1_1:5596344-5596363 Msa0003090:intron 45.0%
GTTTCCCAGAACCGATCTTA+AGG - chr1_1:5596352-5596371 None:intergenic 45.0%
AATCTTGCAGTGTGATCCAG+AGG + chr1_1:5596694-5596713 Msa0003090:intron 45.0%
TCTTGTGACTCTGGCTGTAA+CGG + chr1_1:5596725-5596744 Msa0003090:CDS 45.0%
CGAATACATACTCCAGTCTG+GGG + chr1_1:5596769-5596788 Msa0003090:CDS 45.0%
GAATACATACTCCAGTCTGG+GGG + chr1_1:5596770-5596789 Msa0003090:CDS 45.0%
TATGCTTACACCGGAAGAGA+TGG + chr1_1:5596812-5596831 Msa0003090:CDS 45.0%
GTGCTTTGGCACAGATGTAT+GGG - chr1_1:5597150-5597169 None:intergenic 45.0%
CCAAAGCACGTTTGGATCAT+GGG + chr1_1:5597161-5597180 Msa0003090:CDS 45.0%
CAAAGCACGTTTGGATCATG+GGG + chr1_1:5597162-5597181 Msa0003090:CDS 45.0%
GATCATGGGGTTCTTCTAGT+TGG + chr1_1:5597175-5597194 Msa0003090:CDS 45.0%
!! GGGGTTCTTCTAGTTGGTTT+TGG + chr1_1:5597181-5597200 Msa0003090:CDS 45.0%
!!! CTTCTAGTTGGTTTTGGCAG+TGG + chr1_1:5597187-5597206 Msa0003090:CDS 45.0%
CTATGCTCCCATTCGATTGA+AGG + chr1_1:5597213-5597232 Msa0003090:CDS 45.0%
AGAATTCATGGGGCCAGAAT+TGG + chr1_1:5597257-5597276 Msa0003090:CDS 45.0%
GAATTCATGGGGCCAGAATT+GGG + chr1_1:5597258-5597277 Msa0003090:CDS 45.0%
AATTCATGGGGCCAGAATTG+GGG + chr1_1:5597259-5597278 Msa0003090:CDS 45.0%
! TGTATGTGGAGTGGATTCCA+TGG + chr1_1:5597318-5597337 Msa0003090:CDS 45.0%
TTGTCGGATGAGAAGATCGT+CGG - chr1_1:5595051-5595070 None:intergenic 45.0%
GAACTCAGACGCCGTTAAAT+CGG - chr1_1:5595267-5595286 None:intergenic 45.0%
TCAGTCCAAGAAACTGACGA+CGG - chr1_1:5595289-5595308 None:intergenic 45.0%
GAACAAACGTCTCCGTTTAC+CGG + chr1_1:5595307-5595326 Msa0003090:CDS 45.0%
TCCTACTAACAATCTCCCAG+AGG + chr1_1:5595355-5595374 Msa0003090:CDS 45.0%
! TCCTCTGGGAGATTGTTAGT+AGG - chr1_1:5595359-5595378 None:intergenic 45.0%
!!! GATTTTGATTGGCGCGAGAA+AGG + chr1_1:5595377-5595396 Msa0003090:CDS 45.0%
ATACATGCCTGATCCTTGAC+GGG - chr1_1:5595413-5595432 None:intergenic 45.0%
GATACATGCCTGATCCTTGA+CGG - chr1_1:5595414-5595433 None:intergenic 45.0%
TGGTGTGATTAGGGTTCATG+CGG + chr1_1:5595538-5595557 Msa0003090:intron 45.0%
!! AGTACAACTGGAGCTTTGGA+AGG + chr1_1:5595577-5595596 Msa0003090:CDS 45.0%
GGAGCAAATTATTTGGCGAC+TGG + chr1_1:5595598-5595617 Msa0003090:CDS 45.0%
TCTTAGTGAGCAACAGCTTG+TGG + chr1_1:5595633-5595652 Msa0003090:CDS 45.0%
! GCTTGTGGATTGTGATCATG+TGG + chr1_1:5595648-5595667 Msa0003090:CDS 45.0%
TGCAATGAGTCCTACCTGTT+TGG + chr1_1:5596137-5596156 Msa0003090:intron 45.0%
ATGAGTCCTACCTGTTTGGT+TGG + chr1_1:5596141-5596160 Msa0003090:intron 45.0%
AAAGAGGGAGTGAGCACTTT+AGG - chr1_1:5596294-5596313 None:intergenic 45.0%
! GACTTCCTTAAGATCGGTTC+TGG + chr1_1:5596344-5596363 Msa0003090:intron 45.0%
GTTTCCCAGAACCGATCTTA+AGG - chr1_1:5596352-5596371 None:intergenic 45.0%
AATCTTGCAGTGTGATCCAG+AGG + chr1_1:5596694-5596713 Msa0003090:intron 45.0%
TCTTGTGACTCTGGCTGTAA+CGG + chr1_1:5596725-5596744 Msa0003090:CDS 45.0%
CGAATACATACTCCAGTCTG+GGG + chr1_1:5596769-5596788 Msa0003090:CDS 45.0%
GAATACATACTCCAGTCTGG+GGG + chr1_1:5596770-5596789 Msa0003090:CDS 45.0%
TATGCTTACACCGGAAGAGA+TGG + chr1_1:5596812-5596831 Msa0003090:CDS 45.0%
GTGCTTTGGCACAGATGTAT+GGG - chr1_1:5597150-5597169 None:intergenic 45.0%
CCAAAGCACGTTTGGATCAT+GGG + chr1_1:5597161-5597180 Msa0003090:CDS 45.0%
CAAAGCACGTTTGGATCATG+GGG + chr1_1:5597162-5597181 Msa0003090:CDS 45.0%
GATCATGGGGTTCTTCTAGT+TGG + chr1_1:5597175-5597194 Msa0003090:CDS 45.0%
!! GGGGTTCTTCTAGTTGGTTT+TGG + chr1_1:5597181-5597200 Msa0003090:CDS 45.0%
!!! CTTCTAGTTGGTTTTGGCAG+TGG + chr1_1:5597187-5597206 Msa0003090:CDS 45.0%
CTATGCTCCCATTCGATTGA+AGG + chr1_1:5597213-5597232 Msa0003090:CDS 45.0%
AGAATTCATGGGGCCAGAAT+TGG + chr1_1:5597257-5597276 Msa0003090:CDS 45.0%
GAATTCATGGGGCCAGAATT+GGG + chr1_1:5597258-5597277 Msa0003090:CDS 45.0%
AATTCATGGGGCCAGAATTG+GGG + chr1_1:5597259-5597278 Msa0003090:CDS 45.0%
! TGTATGTGGAGTGGATTCCA+TGG + chr1_1:5597318-5597337 Msa0003090:CDS 45.0%
GAGTGCGATGAGGAAACGAT+GGG - chr1_1:5594973-5594992 None:intergenic 50.0%
AGAGTGCGATGAGGAAACGA+TGG - chr1_1:5594974-5594993 None:intergenic 50.0%
!! ATCGTCGGAGTTGGTGTCAT+CGG - chr1_1:5595036-5595055 None:intergenic 50.0%
GATGAGAAGATCGTCGGAGT+TGG - chr1_1:5595045-5595064 None:intergenic 50.0%
CTTGATCCTTCTGCGCAACA+CGG + chr1_1:5595227-5595246 Msa0003090:CDS 50.0%
GAGTTCCGTCGTCAGTTTCT+TGG + chr1_1:5595281-5595300 Msa0003090:CDS 50.0%
CGCGCCAATCAAAATCCTCT+GGG - chr1_1:5595373-5595392 None:intergenic 50.0%
TCGCGCCAATCAAAATCCTC+TGG - chr1_1:5595374-5595393 None:intergenic 50.0%
CACGCTCTGATGTCAACGTA+AGG + chr1_1:5596193-5596212 Msa0003090:intron 50.0%
ACCTGAGGTCAAAGATGGGT+TGG + chr1_1:5596439-5596458 Msa0003090:intron 50.0%
TCCAACCCATCTTTGACCTC+AGG - chr1_1:5596443-5596462 None:intergenic 50.0%
TGGGGGAGTAGTGTCAGAAA+AGG + chr1_1:5596787-5596806 Msa0003090:CDS 50.0%
CTTGCAGGATCCATCTCTTC+CGG - chr1_1:5596825-5596844 None:intergenic 50.0%
GTAAAGAATGGCCCTCTTGC+AGG + chr1_1:5596926-5596945 Msa0003090:CDS 50.0%
CAGTTGCTATCAATGCTGCG+TGG + chr1_1:5597095-5597114 Msa0003090:intron 50.0%
CGTGCTTTGGCACAGATGTA+TGG - chr1_1:5597151-5597170 None:intergenic 50.0%
CATCTGTGCCAAAGCACGTT+TGG + chr1_1:5597153-5597172 Msa0003090:CDS 50.0%
GCCAAAGCACGTTTGGATCA+TGG + chr1_1:5597160-5597179 Msa0003090:CDS 50.0%
CCCATGATCCAAACGTGCTT+TGG - chr1_1:5597164-5597183 None:intergenic 50.0%
!!! CTAGTTGGTTTTGGCAGTGG+TGG + chr1_1:5597190-5597209 Msa0003090:CDS 50.0%
ATCCTTCCTCACCCCAATTC+TGG - chr1_1:5597273-5597292 None:intergenic 50.0%
TGCAGAGGCCGAAATGTATG+TGG + chr1_1:5597304-5597323 Msa0003090:CDS 50.0%
AGGCCGAAATGTATGTGGAG+TGG + chr1_1:5597309-5597328 Msa0003090:CDS 50.0%
AGATTGAGCTGCAGCAACAG+TGG - chr1_1:5597347-5597366 None:intergenic 50.0%
GAGTGCGATGAGGAAACGAT+GGG - chr1_1:5594973-5594992 None:intergenic 50.0%
AGAGTGCGATGAGGAAACGA+TGG - chr1_1:5594974-5594993 None:intergenic 50.0%
!! ATCGTCGGAGTTGGTGTCAT+CGG - chr1_1:5595036-5595055 None:intergenic 50.0%
GATGAGAAGATCGTCGGAGT+TGG - chr1_1:5595045-5595064 None:intergenic 50.0%
CTTGATCCTTCTGCGCAACA+CGG + chr1_1:5595227-5595246 Msa0003090:CDS 50.0%
GAGTTCCGTCGTCAGTTTCT+TGG + chr1_1:5595281-5595300 Msa0003090:CDS 50.0%
CGCGCCAATCAAAATCCTCT+GGG - chr1_1:5595373-5595392 None:intergenic 50.0%
TCGCGCCAATCAAAATCCTC+TGG - chr1_1:5595374-5595393 None:intergenic 50.0%
CACGCTCTGATGTCAACGTA+AGG + chr1_1:5596193-5596212 Msa0003090:intron 50.0%
ACCTGAGGTCAAAGATGGGT+TGG + chr1_1:5596439-5596458 Msa0003090:intron 50.0%
TCCAACCCATCTTTGACCTC+AGG - chr1_1:5596443-5596462 None:intergenic 50.0%
TGGGGGAGTAGTGTCAGAAA+AGG + chr1_1:5596787-5596806 Msa0003090:CDS 50.0%
CTTGCAGGATCCATCTCTTC+CGG - chr1_1:5596825-5596844 None:intergenic 50.0%
GTAAAGAATGGCCCTCTTGC+AGG + chr1_1:5596926-5596945 Msa0003090:CDS 50.0%
CAGTTGCTATCAATGCTGCG+TGG + chr1_1:5597095-5597114 Msa0003090:intron 50.0%
CGTGCTTTGGCACAGATGTA+TGG - chr1_1:5597151-5597170 None:intergenic 50.0%
CATCTGTGCCAAAGCACGTT+TGG + chr1_1:5597153-5597172 Msa0003090:CDS 50.0%
GCCAAAGCACGTTTGGATCA+TGG + chr1_1:5597160-5597179 Msa0003090:CDS 50.0%
CCCATGATCCAAACGTGCTT+TGG - chr1_1:5597164-5597183 None:intergenic 50.0%
!!! CTAGTTGGTTTTGGCAGTGG+TGG + chr1_1:5597190-5597209 Msa0003090:CDS 50.0%
ATCCTTCCTCACCCCAATTC+TGG - chr1_1:5597273-5597292 None:intergenic 50.0%
TGCAGAGGCCGAAATGTATG+TGG + chr1_1:5597304-5597323 Msa0003090:CDS 50.0%
AGGCCGAAATGTATGTGGAG+TGG + chr1_1:5597309-5597328 Msa0003090:CDS 50.0%
AGATTGAGCTGCAGCAACAG+TGG - chr1_1:5597347-5597366 None:intergenic 50.0%
! CGAAGAGGAAGAGTGCGATG+AGG - chr1_1:5594983-5595002 None:intergenic 55.0%
GTCATCGGAGAGGGTTTGTG+CGG - chr1_1:5595021-5595040 None:intergenic 55.0%
!! GGAGTTGGTGTCATCGGAGA+GGG - chr1_1:5595030-5595049 None:intergenic 55.0%
GCGCAGAAGGATCAAGCTTC+TGG - chr1_1:5595223-5595242 None:intergenic 55.0%
GTGATTCCGTGTTGCGCAGA+AGG - chr1_1:5595236-5595255 None:intergenic 55.0%
TCTGAGCGTGAGCCGGTAAA+CGG - chr1_1:5595322-5595341 None:intergenic 55.0%
!! TTTACCGGCTCACGCTCAGA+AGG + chr1_1:5595322-5595341 Msa0003090:CDS 55.0%
CTGATCCTTGACGGGAGTGA+CGG - chr1_1:5595405-5595424 None:intergenic 55.0%
AGGGTTCATGCGGTTCGTGT+TGG + chr1_1:5595548-5595567 Msa0003090:intron 55.0%
GGGTTCATGCGGTTCGTGTT+GGG + chr1_1:5595549-5595568 Msa0003090:intron 55.0%
GGGAGTGAGCACTTTAGGCA+TGG - chr1_1:5596289-5596308 None:intergenic 55.0%
TGTGACTCTGGCTGTAACGG+TGG + chr1_1:5596728-5596747 Msa0003090:CDS 55.0%
TGCAGCAACAGTGGAGACCA+TGG - chr1_1:5597338-5597357 None:intergenic 55.0%
! CGAAGAGGAAGAGTGCGATG+AGG - chr1_1:5594983-5595002 None:intergenic 55.0%
GTCATCGGAGAGGGTTTGTG+CGG - chr1_1:5595021-5595040 None:intergenic 55.0%
!! GGAGTTGGTGTCATCGGAGA+GGG - chr1_1:5595030-5595049 None:intergenic 55.0%
GCGCAGAAGGATCAAGCTTC+TGG - chr1_1:5595223-5595242 None:intergenic 55.0%
GTGATTCCGTGTTGCGCAGA+AGG - chr1_1:5595236-5595255 None:intergenic 55.0%
TCTGAGCGTGAGCCGGTAAA+CGG - chr1_1:5595322-5595341 None:intergenic 55.0%
!! TTTACCGGCTCACGCTCAGA+AGG + chr1_1:5595322-5595341 Msa0003090:CDS 55.0%
CTGATCCTTGACGGGAGTGA+CGG - chr1_1:5595405-5595424 None:intergenic 55.0%
AGGGTTCATGCGGTTCGTGT+TGG + chr1_1:5595548-5595567 Msa0003090:intron 55.0%
GGGTTCATGCGGTTCGTGTT+GGG + chr1_1:5595549-5595568 Msa0003090:intron 55.0%
GGGAGTGAGCACTTTAGGCA+TGG - chr1_1:5596289-5596308 None:intergenic 55.0%
TGTGACTCTGGCTGTAACGG+TGG + chr1_1:5596728-5596747 Msa0003090:CDS 55.0%
TGCAGCAACAGTGGAGACCA+TGG - chr1_1:5597338-5597357 None:intergenic 55.0%
TTGTGCGGCGGTTGCAACAG+CGG - chr1_1:5595006-5595025 None:intergenic 60.0%
ATCGGAGAGGGTTTGTGCGG+CGG - chr1_1:5595018-5595037 None:intergenic 60.0%
!! CGGAGTTGGTGTCATCGGAG+AGG - chr1_1:5595031-5595050 None:intergenic 60.0%
!! CAGCGGTGTCGACGACTTGT+CGG - chr1_1:5595067-5595086 None:intergenic 60.0%
CGTCACTCCCGTCAAGGATC+AGG + chr1_1:5595403-5595422 Msa0003090:CDS 60.0%
CTGACACTACTCCCCCAGAC+TGG - chr1_1:5596784-5596803 None:intergenic 60.0%
ATGGGGCCAGAATTGGGGTG+AGG + chr1_1:5597264-5597283 Msa0003090:CDS 60.0%
GGCCAGAATTGGGGTGAGGA+AGG + chr1_1:5597268-5597287 Msa0003090:CDS 60.0%
TTGTGCGGCGGTTGCAACAG+CGG - chr1_1:5595006-5595025 None:intergenic 60.0%
ATCGGAGAGGGTTTGTGCGG+CGG - chr1_1:5595018-5595037 None:intergenic 60.0%
!! CGGAGTTGGTGTCATCGGAG+AGG - chr1_1:5595031-5595050 None:intergenic 60.0%
!! CAGCGGTGTCGACGACTTGT+CGG - chr1_1:5595067-5595086 None:intergenic 60.0%
CGTCACTCCCGTCAAGGATC+AGG + chr1_1:5595403-5595422 Msa0003090:CDS 60.0%
CTGACACTACTCCCCCAGAC+TGG - chr1_1:5596784-5596803 None:intergenic 60.0%
ATGGGGCCAGAATTGGGGTG+AGG + chr1_1:5597264-5597283 Msa0003090:CDS 60.0%
GGCCAGAATTGGGGTGAGGA+AGG + chr1_1:5597268-5597287 Msa0003090:CDS 60.0%
CGGTTGCAACAGCGGCGAAG+AGG - chr1_1:5594998-5595017 None:intergenic 65.0%
GGAGCCTTCTGAGCGTGAGC+CGG - chr1_1:5595329-5595348 None:intergenic 65.0%
! AGGTGCCGTCACTCCCGTCA+AGG + chr1_1:5595397-5595416 Msa0003090:CDS 65.0%
CGGTTGCAACAGCGGCGAAG+AGG - chr1_1:5594998-5595017 None:intergenic 65.0%
GGAGCCTTCTGAGCGTGAGC+CGG - chr1_1:5595329-5595348 None:intergenic 65.0%
! AGGTGCCGTCACTCCCGTCA+AGG + chr1_1:5595397-5595416 Msa0003090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 5594966 5597369 5594966 ID=Msa0003090;Name=Msa0003090
chr1_1 mRNA 5594966 5597369 5594966 ID=Msa0003090-mRNA-1;Parent=Msa0003090;Name=Msa0003090-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|364
chr1_1 exon 5594966 5595424 5594966 ID=Msa0003090-mRNA-1:exon:1661;Parent=Msa0003090-mRNA-1
chr1_1 exon 5595550 5595669 5595550 ID=Msa0003090-mRNA-1:exon:1662;Parent=Msa0003090-mRNA-1
chr1_1 exon 5596704 5596947 5596704 ID=Msa0003090-mRNA-1:exon:1663;Parent=Msa0003090-mRNA-1
chr1_1 exon 5597098 5597369 5597098 ID=Msa0003090-mRNA-1:exon:1664;Parent=Msa0003090-mRNA-1
chr1_1 CDS 5594966 5595424 5594966 ID=Msa0003090-mRNA-1:cds;Parent=Msa0003090-mRNA-1
chr1_1 CDS 5595550 5595669 5595550 ID=Msa0003090-mRNA-1:cds;Parent=Msa0003090-mRNA-1
chr1_1 CDS 5596704 5596947 5596704 ID=Msa0003090-mRNA-1:cds;Parent=Msa0003090-mRNA-1
chr1_1 CDS 5597098 5597369 5597098 ID=Msa0003090-mRNA-1:cds;Parent=Msa0003090-mRNA-1
Gene Sequence

>Msa0003090

ATGGCCCATCGTTTCCTCATCGCACTCTTCCTCTTCGCCGCTGTTGCAACCGCCGCACAAACCCTCTCCGATGACACCAACTCCGACGATCTTCTCATCCGACAAGTCGTCGACACCGCTGAAGATCACATACTAAACGCAGAGCATCACTTCACAACGTTCAAGTCAAAGTTCAGCAAAAACTACGCAACAAAAGAAGAACATGATTACCGATTTGGCGTGTTCAAATCAAATCTCATCAAAGCGAAGCTTCACCAGAAGCTTGATCCTTCTGCGCAACACGGAATCACTAAATTTTCCGATTTAACGGCGTCTGAGTTCCGTCGTCAGTTTCTTGGACTGAACAAACGTCTCCGTTTACCGGCTCACGCTCAGAAGGCTCCGATTCTTCCTACTAACAATCTCCCAGAGGATTTTGATTGGCGCGAGAAAGGTGCCGTCACTCCCGTCAAGGATCAGGGTTCATGCGGTTCGTGTTGGGCTTTTAGTACAACTGGAGCTTTGGAAGGAGCAAATTATTTGGCGACTGGGAAGCTAGTGAGTCTTAGTGAGCAACAGCTTGTGGATTGTGATCATGTGTGTGATCCAGAGGAACGTAATTCTTGTGACTCTGGCTGTAACGGTGGATTGATGAACAACGCGTTCGAATACATACTCCAGTCTGGGGGAGTAGTGTCAGAAAAGGACTATGCTTACACCGGAAGAGATGGATCCTGCAAGTTTGACAAAAGCAAGATTGTAGCTTCCATATCTAACTTCAGTGTCGTTTCTCTAGACGAAGACCAAATTGCTGCAAATCTAGTAAAGAATGGCCCTCTTGCAGTTGCTATCAATGCTGCGTGGATGCAGACATATATGAGTGGTGTCTCATGCCCATACATCTGTGCCAAAGCACGTTTGGATCATGGGGTTCTTCTAGTTGGTTTTGGCAGTGGTGGCTATGCTCCCATTCGATTGAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGCCAGAATTGGGGTGAGGAAGGATATTATAAGATCTGCAGAGGCCGAAATGTATGTGGAGTGGATTCCATGGTCTCCACTGTTGCTGCAGCTCAATCTTGA
Protein sequence

>Msa0003090

MAHRFLIALFLFAAVATAAQTLSDDTNSDDLLIRQVVDTAEDHILNAEHHFTTFKSKFSKNYATKEEHDYRFGVFKSNLIKAKLHQKLDPSAQHGITKFSDLTASEFRRQFLGLNKRLRLPAHAQKAPILPTNNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGANYLATGKLVSLSEQQLVDCDHVCDPEERNSCDSGCNGGLMNNAFEYILQSGGVVSEKDYAYTGRDGSCKFDKSKIVASISNFSVVSLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYICAKARLDHGVLLVGFGSGGYAPIRLKEKPYWIIKNSWGQNWGEEGYYKICRGRNVCGVDSMVSTVAAAQS*