Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050800 | sp|P25804|CYSP_PEA | 89.231 | 260 | 25 | 1 | 15 | 274 | 15 | 271 | 3.59e-175 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050800 | A0A396JH07 | 97.810 | 274 | 6 | 0 | 1 | 274 | 1 | 274 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003090 | Msa0050800 | 0.961138 | 2.347629e-119 | -8.615850e-47 |
| Msa0050650 | Msa0050800 | 0.971412 | 4.021242e-133 | -8.615850e-47 |
| Msa0050690 | Msa0050800 | 0.968874 | 2.661082e-129 | -8.615850e-47 |
| Msa0050800 | Msa0146680 | 0.902044 | 1.448190e-78 | -8.615850e-47 |
| Msa0050800 | Msa0882370 | -0.820598 | 6.303117e-53 | -8.615850e-47 |
| Msa0050800 | Msa0947430 | -0.822014 | 2.971701e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050800 | MtrunA17_Chr1g0155781 | 97.810 | 274 | 6 | 0 | 1 | 274 | 1 | 274 | 0.0 | 560 |
| Msa0050800 | MtrunA17_Chr4g0035551 | 68.345 | 278 | 77 | 5 | 1 | 274 | 1 | 271 | 1.94e-132 | 379 |
| Msa0050800 | MtrunA17_Chr1g0199131 | 51.460 | 274 | 119 | 4 | 7 | 274 | 15 | 280 | 3.06e-95 | 285 |
| Msa0050800 | MtrunA17_Chr4g0036731 | 53.358 | 268 | 83 | 6 | 8 | 274 | 13 | 239 | 1.02e-85 | 259 |
| Msa0050800 | MtrunA17_Chr4g0037291 | 51.301 | 269 | 91 | 6 | 8 | 276 | 54 | 282 | 1.20e-82 | 253 |
| Msa0050800 | MtrunA17_Chr4g0036281 | 50.178 | 281 | 95 | 8 | 1 | 276 | 1 | 241 | 1.51e-82 | 251 |
| Msa0050800 | MtrunA17_Chr1g0208261 | 41.250 | 240 | 124 | 5 | 41 | 274 | 83 | 311 | 3.93e-52 | 177 |
| Msa0050800 | MtrunA17_Chr3g0144281 | 39.381 | 226 | 127 | 3 | 51 | 274 | 47 | 264 | 2.80e-49 | 166 |
| Msa0050800 | MtrunA17_Chr4g0040851 | 38.679 | 212 | 120 | 3 | 51 | 261 | 61 | 263 | 1.29e-48 | 164 |
| Msa0050800 | MtrunA17_Chr3g0134231 | 35.612 | 278 | 158 | 6 | 5 | 274 | 13 | 277 | 1.36e-47 | 164 |
| Msa0050800 | MtrunA17_Chr0c27g0493921 | 40.152 | 264 | 134 | 8 | 9 | 263 | 7 | 255 | 4.61e-47 | 160 |
| Msa0050800 | MtrunA17_Chr2g0325121 | 37.778 | 225 | 129 | 3 | 51 | 274 | 39 | 253 | 5.14e-47 | 160 |
| Msa0050800 | MtrunA17_Chr4g0070441 | 40.152 | 264 | 134 | 8 | 9 | 263 | 7 | 255 | 5.37e-47 | 160 |
| Msa0050800 | MtrunA17_Chr3g0116551 | 41.121 | 214 | 112 | 4 | 67 | 274 | 55 | 260 | 1.87e-46 | 159 |
| Msa0050800 | MtrunA17_Chr5g0405751 | 36.905 | 252 | 134 | 6 | 33 | 274 | 23 | 259 | 6.15e-46 | 157 |
| Msa0050800 | MtrunA17_Chr4g0053311 | 41.553 | 219 | 103 | 6 | 57 | 266 | 41 | 243 | 7.42e-46 | 157 |
| Msa0050800 | MtrunA17_Chr4g0041521 | 39.474 | 228 | 121 | 4 | 54 | 276 | 43 | 258 | 1.04e-45 | 156 |
| Msa0050800 | MtrunA17_Chr4g0024411 | 37.826 | 230 | 122 | 6 | 54 | 274 | 41 | 258 | 1.47e-45 | 156 |
| Msa0050800 | MtrunA17_Chr4g0041061 | 35.088 | 285 | 143 | 9 | 1 | 274 | 7 | 260 | 2.25e-45 | 155 |
| Msa0050800 | MtrunA17_Chr4g0041481 | 37.447 | 235 | 130 | 4 | 45 | 274 | 34 | 256 | 8.79e-45 | 154 |
| Msa0050800 | MtrunA17_Chr4g0040881 | 35.688 | 269 | 134 | 8 | 14 | 274 | 23 | 260 | 1.12e-44 | 154 |
| Msa0050800 | MtrunA17_Chr4g0060251 | 38.696 | 230 | 120 | 6 | 54 | 274 | 43 | 260 | 1.39e-44 | 154 |
| Msa0050800 | MtrunA17_Chr2g0315491 | 39.545 | 220 | 117 | 5 | 60 | 274 | 48 | 256 | 1.79e-44 | 153 |
| Msa0050800 | MtrunA17_Chr4g0058081 | 39.815 | 216 | 113 | 6 | 66 | 274 | 54 | 259 | 2.02e-43 | 151 |
| Msa0050800 | MtrunA17_Chr3g0142071 | 38.095 | 231 | 128 | 5 | 51 | 274 | 50 | 272 | 3.06e-43 | 153 |
| Msa0050800 | MtrunA17_Chr4g0041081 | 36.777 | 242 | 131 | 7 | 41 | 274 | 33 | 260 | 9.72e-43 | 149 |
| Msa0050800 | MtrunA17_Chr8g0379151 | 38.182 | 220 | 118 | 8 | 51 | 263 | 67 | 275 | 1.17e-42 | 149 |
| Msa0050800 | MtrunA17_Chr2g0283901 | 37.500 | 224 | 126 | 5 | 51 | 269 | 51 | 265 | 1.71e-42 | 151 |
| Msa0050800 | MtrunA17_Chr4g0041471 | 32.491 | 277 | 158 | 6 | 3 | 274 | 5 | 257 | 1.19e-41 | 146 |
| Msa0050800 | MtrunA17_Chr1g0153011 | 35.379 | 277 | 133 | 8 | 5 | 274 | 21 | 258 | 6.65e-41 | 146 |
| Msa0050800 | MtrunA17_Chr2g0319991 | 35.950 | 242 | 131 | 8 | 44 | 274 | 31 | 259 | 2.25e-40 | 142 |
| Msa0050800 | MtrunA17_Chr2g0283671 | 48.649 | 148 | 65 | 4 | 128 | 274 | 7 | 144 | 4.50e-37 | 131 |
| Msa0050800 | MtrunA17_Chr2g0283741 | 35.025 | 197 | 109 | 4 | 51 | 240 | 53 | 237 | 2.08e-36 | 133 |
| Msa0050800 | MtrunA17_Chr2g0283751 | 36.318 | 201 | 102 | 5 | 51 | 240 | 53 | 238 | 9.81e-35 | 127 |
| Msa0050800 | MtrunA17_Chr7g0248811 | 32.906 | 234 | 145 | 4 | 42 | 274 | 30 | 252 | 3.82e-34 | 126 |
| Msa0050800 | MtrunA17_Chr8g0379671 | 55.556 | 99 | 35 | 1 | 176 | 274 | 23 | 112 | 9.82e-33 | 118 |
| Msa0050800 | MtrunA17_Chr2g0311381 | 32.143 | 280 | 145 | 11 | 1 | 263 | 1 | 252 | 2.29e-32 | 122 |
| Msa0050800 | MtrunA17_Chr7g0248391 | 32.340 | 235 | 144 | 5 | 42 | 274 | 33 | 254 | 3.50e-32 | 121 |
| Msa0050800 | MtrunA17_Chr2g0311471 | 31.707 | 287 | 154 | 10 | 1 | 274 | 1 | 258 | 7.23e-30 | 115 |
| Msa0050800 | MtrunA17_Chr1g0156161 | 41.096 | 146 | 74 | 3 | 133 | 276 | 47 | 182 | 1.40e-23 | 96.7 |
| Msa0050800 | MtrunA17_Chr1g0156771 | 46.018 | 113 | 49 | 3 | 133 | 242 | 53 | 156 | 2.57e-23 | 93.2 |
| Msa0050800 | MtrunA17_Chr2g0311391 | 27.473 | 273 | 140 | 10 | 45 | 274 | 30 | 287 | 1.12e-22 | 95.9 |
| Msa0050800 | MtrunA17_Chr2g0311091 | 36.806 | 144 | 75 | 4 | 58 | 185 | 41 | 184 | 3.94e-20 | 85.5 |
| Msa0050800 | MtrunA17_Chr2g0283661 | 30.000 | 170 | 95 | 4 | 5 | 170 | 7 | 156 | 3.40e-18 | 82.0 |
| Msa0050800 | MtrunA17_Chr7g0248421 | 45.122 | 82 | 38 | 1 | 159 | 240 | 57 | 131 | 6.90e-16 | 74.7 |
| Msa0050800 | MtrunA17_Chr7g0271031 | 24.161 | 298 | 179 | 12 | 7 | 273 | 20 | 301 | 1.12e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050800 | AT4G39090.1 | 73.016 | 252 | 67 | 1 | 24 | 274 | 24 | 275 | 3.07e-138 | 394 |
| Msa0050800 | AT2G21430.1 | 68.539 | 267 | 75 | 2 | 9 | 274 | 14 | 272 | 6.09e-137 | 390 |
| Msa0050800 | AT4G16190.1 | 67.033 | 273 | 87 | 3 | 5 | 274 | 8 | 280 | 1.01e-119 | 347 |
| Msa0050800 | AT3G54940.3 | 53.906 | 256 | 107 | 3 | 29 | 275 | 24 | 277 | 6.59e-102 | 299 |
| Msa0050800 | AT3G54940.2 | 50.000 | 280 | 120 | 4 | 4 | 274 | 8 | 276 | 1.23e-99 | 296 |
| Msa0050800 | AT1G06260.1 | 42.601 | 223 | 114 | 6 | 48 | 265 | 40 | 253 | 9.91e-53 | 175 |
| Msa0050800 | AT4G35350.2 | 38.866 | 247 | 133 | 5 | 36 | 274 | 33 | 269 | 2.05e-52 | 173 |
| Msa0050800 | AT5G60360.2 | 42.678 | 239 | 122 | 4 | 37 | 269 | 42 | 271 | 2.98e-51 | 172 |
| Msa0050800 | AT4G35350.1 | 38.866 | 247 | 133 | 5 | 36 | 274 | 33 | 269 | 3.16e-51 | 172 |
| Msa0050800 | AT5G60360.1 | 42.678 | 239 | 122 | 4 | 37 | 269 | 42 | 271 | 3.33e-51 | 172 |
| Msa0050800 | AT5G60360.3 | 42.678 | 239 | 122 | 4 | 37 | 269 | 42 | 271 | 4.68e-51 | 171 |
| Msa0050800 | AT4G36880.1 | 41.935 | 217 | 109 | 5 | 67 | 274 | 69 | 277 | 5.23e-51 | 172 |
| Msa0050800 | AT3G45310.2 | 39.706 | 272 | 144 | 7 | 7 | 269 | 11 | 271 | 5.26e-50 | 169 |
| Msa0050800 | AT3G45310.1 | 39.706 | 272 | 144 | 7 | 7 | 269 | 11 | 271 | 5.68e-50 | 168 |
| Msa0050800 | AT1G47128.1 | 42.326 | 215 | 104 | 4 | 67 | 274 | 68 | 269 | 8.41e-50 | 171 |
| Msa0050800 | AT3G19400.2 | 40.000 | 220 | 120 | 5 | 60 | 274 | 53 | 265 | 5.54e-49 | 164 |
| Msa0050800 | AT3G19390.1 | 39.655 | 232 | 128 | 5 | 47 | 274 | 39 | 262 | 1.12e-48 | 167 |
| Msa0050800 | AT1G20850.1 | 41.304 | 230 | 119 | 5 | 51 | 274 | 51 | 270 | 1.49e-48 | 165 |
| Msa0050800 | AT5G43060.1 | 43.902 | 205 | 99 | 3 | 55 | 259 | 59 | 247 | 1.58e-48 | 167 |
| Msa0050800 | AT3G19400.1 | 40.000 | 220 | 120 | 5 | 60 | 274 | 53 | 265 | 1.10e-47 | 162 |
| Msa0050800 | AT1G09850.1 | 40.088 | 227 | 125 | 4 | 51 | 274 | 32 | 250 | 2.76e-47 | 163 |
| Msa0050800 | AT3G43960.1 | 42.342 | 222 | 113 | 7 | 60 | 274 | 50 | 263 | 1.74e-46 | 160 |
| Msa0050800 | AT5G45890.1 | 35.943 | 281 | 142 | 10 | 7 | 274 | 6 | 261 | 1.79e-46 | 159 |
| Msa0050800 | AT3G48340.1 | 36.327 | 245 | 137 | 5 | 41 | 274 | 24 | 260 | 1.14e-45 | 157 |
| Msa0050800 | AT5G50260.1 | 45.729 | 199 | 88 | 4 | 66 | 259 | 52 | 235 | 2.00e-45 | 157 |
| Msa0050800 | AT1G29090.1 | 38.235 | 238 | 129 | 6 | 47 | 276 | 44 | 271 | 2.73e-45 | 156 |
| Msa0050800 | AT4G23520.1 | 39.485 | 233 | 127 | 5 | 47 | 274 | 43 | 266 | 4.45e-45 | 155 |
| Msa0050800 | AT2G34080.1 | 36.842 | 228 | 128 | 4 | 54 | 274 | 42 | 260 | 7.74e-43 | 149 |
| Msa0050800 | AT3G48350.2 | 44.444 | 171 | 82 | 4 | 71 | 236 | 57 | 219 | 1.13e-39 | 140 |
| Msa0050800 | AT3G48350.1 | 44.444 | 171 | 82 | 4 | 71 | 236 | 57 | 219 | 1.65e-38 | 139 |
| Msa0050800 | AT2G27420.1 | 38.889 | 198 | 84 | 6 | 54 | 232 | 38 | 217 | 2.90e-37 | 135 |
| Msa0050800 | AT4G11310.1 | 33.884 | 242 | 140 | 5 | 2 | 239 | 7 | 232 | 2.84e-36 | 132 |
| Msa0050800 | AT4G11320.2 | 33.469 | 245 | 139 | 5 | 5 | 240 | 11 | 240 | 1.18e-34 | 129 |
| Msa0050800 | AT4G11320.1 | 33.469 | 245 | 139 | 5 | 5 | 240 | 11 | 240 | 1.18e-34 | 129 |
| Msa0050800 | AT3G49340.1 | 31.878 | 229 | 138 | 5 | 54 | 274 | 38 | 256 | 3.23e-33 | 124 |
| Msa0050800 | AT1G29080.1 | 33.478 | 230 | 127 | 6 | 57 | 274 | 45 | 260 | 3.15e-32 | 122 |
| Msa0050800 | AT1G29110.1 | 30.268 | 261 | 142 | 11 | 28 | 274 | 15 | 249 | 2.58e-22 | 94.7 |
| Msa0050800 | AT4G01610.1 | 29.289 | 239 | 125 | 12 | 64 | 273 | 34 | 257 | 2.73e-12 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCCGTCGTCAGTTTCT+TGG | 0.223807 | 1_2:+4811697 | Msa0050800:CDS |
| TTTGGAAGGAGCAAATTATT+TGG | 0.286718 | 1_2:+4812007 | Msa0050800:CDS |
| GAAGAACATGATTACCGATT+TGG | 0.310705 | 1_2:+4811577 | Msa0050800:CDS |
| GTAAAGAATGGCCCTCTTGC+AGG | 0.324125 | 1_2:+4813342 | Msa0050800:CDS |
| GAACAAACGTCTCCGTTTAC+CGG | 0.333947 | 1_2:+4811723 | Msa0050800:CDS |
| TTACTAGATTTGCAGCAATT+TGG | 0.338194 | 1_2:-4813323 | None:intergenic |
| GCGCAGAAGGATCAAGCTTC+TGG | 0.386901 | 1_2:-4811636 | None:intergenic |
| GAACTCAGACGCCGTTAAAT+CGG | 0.390963 | 1_2:-4811680 | None:intergenic |
| TTCGAATACATACTCCAGTC+TGG | 0.403345 | 1_2:+4813183 | Msa0050800:CDS |
| GGGTTCATGCGGTTCGTGTT+GGG | 0.409026 | 1_2:+4811965 | Msa0050800:intron |
| CTTGCAGGATCCATCTCTTC+CGG | 0.413354 | 1_2:-4813238 | None:intergenic |
| AGGGTTCATGCGGTTCGTGT+TGG | 0.415010 | 1_2:+4811964 | Msa0050800:intron |
| TCGCGCCAATCAAAATCCTC+TGG | 0.420389 | 1_2:-4811787 | None:intergenic |
| CGTCACTCCCGTCAAGGATC+AGG | 0.443966 | 1_2:+4811819 | Msa0050800:CDS |
| TCTGAGCGTGAGCCGGTAAA+CGG | 0.474751 | 1_2:-4811735 | None:intergenic |
| GGAGCAAATTATTTGGCGAC+TGG | 0.478944 | 1_2:+4812014 | Msa0050800:CDS |
| TTGATTTGAACACGCCAAAT+CGG | 0.479498 | 1_2:-4811591 | None:intergenic |
| AACAATTAGCTACCTGCAAG+AGG | 0.483963 | 1_2:-4813354 | None:intergenic |
| GTGATTCCGTGTTGCGCAGA+AGG | 0.484794 | 1_2:-4811649 | None:intergenic |
| CAGCGGTGTCGACGACTTGT+CGG | 0.487131 | 1_2:-4811480 | None:intergenic |
| TCACAAGAATTACGTTCCTC+TGG | 0.490836 | 1_2:-4813126 | None:intergenic |
| CGCGCCAATCAAAATCCTCT+GGG | 0.504763 | 1_2:-4811786 | None:intergenic |
| ATCGTCGGAGTTGGTGTCAT+CGG | 0.513790 | 1_2:-4811449 | None:intergenic |
| GCTGCAAATCTAGTAAAGAA+TGG | 0.519363 | 1_2:+4813330 | Msa0050800:CDS |
| GATGAGAAGATCGTCGGAGT+TGG | 0.521387 | 1_2:-4811458 | None:intergenic |
| TCTTAGTGAGCAACAGCTTG+TGG | 0.523786 | 1_2:+4812049 | Msa0050800:CDS |
| TCGAATACATACTCCAGTCT+GGG | 0.524172 | 1_2:+4813184 | Msa0050800:CDS |
| GATACATGCCTGATCCTTGA+CGG | 0.527318 | 1_2:-4811827 | None:intergenic |
| TTGTGCGGCGGTTGCAACAG+CGG | 0.528593 | 1_2:-4811419 | None:intergenic |
| GGAGTTGGTGTCATCGGAGA+GGG | 0.533186 | 1_2:-4811443 | None:intergenic |
| GAACGTAATTCTTGTGACTC+TGG | 0.537907 | 1_2:+4813132 | Msa0050800:CDS |
| AGATTGTTAGTAGGAAGAAT+CGG | 0.540576 | 1_2:-4811763 | None:intergenic |
| ATCGGAGAGGGTTTGTGCGG+CGG | 0.540988 | 1_2:-4811431 | None:intergenic |
| TATGCTTACACCGGAAGAGA+TGG | 0.544908 | 1_2:+4813228 | Msa0050800:CDS |
| TGTGACTCTGGCTGTAACGG+TGG | 0.548240 | 1_2:+4813144 | Msa0050800:CDS |
| GGAGCCTTCTGAGCGTGAGC+CGG | 0.555112 | 1_2:-4811742 | None:intergenic |
| AGTACAACTGGAGCTTTGGA+AGG | 0.555301 | 1_2:+4811993 | Msa0050800:CDS |
| TCCTCTGGGAGATTGTTAGT+AGG | 0.556352 | 1_2:-4811772 | None:intergenic |
| TCTTGTGACTCTGGCTGTAA+CGG | 0.557182 | 1_2:+4813141 | Msa0050800:CDS |
| CGGTTGCAACAGCGGCGAAG+AGG | 0.560629 | 1_2:-4811411 | None:intergenic |
| AACGACACTGAAGTTAGATA+CGG | 0.563918 | 1_2:-4813286 | None:intergenic |
| TTTACCGGCTCACGCTCAGA+AGG | 0.571687 | 1_2:+4811738 | Msa0050800:CDS |
| ATACATGCCTGATCCTTGAC+GGG | 0.580358 | 1_2:-4811826 | None:intergenic |
| GAGCAAATTATTTGGCGACT+GGG | 0.581395 | 1_2:+4812015 | Msa0050800:CDS |
| CTGATCCTTGACGGGAGTGA+CGG | 0.594529 | 1_2:-4811818 | None:intergenic |
| TGGTGTGATTAGGGTTCATG+CGG | 0.605339 | 1_2:+4811954 | Msa0050800:intron |
| CTTGATCCTTCTGCGCAACA+CGG | 0.608322 | 1_2:+4811643 | Msa0050800:CDS |
| AGGTGCCGTCACTCCCGTCA+AGG | 0.610158 | 1_2:+4811813 | Msa0050800:CDS |
| GAGTGCGATGAGGAAACGAT+GGG | 0.610185 | 1_2:-4811386 | None:intergenic |
| AGAGTGCGATGAGGAAACGA+TGG | 0.615222 | 1_2:-4811387 | None:intergenic |
| TTGTCGGATGAGAAGATCGT+CGG | 0.630035 | 1_2:-4811464 | None:intergenic |
| GATGAGGAAACGATGGGCCA+TGG | 0.632658 | 1_2:-4811380 | None:intergenic |
| CGAATACATACTCCAGTCTG+GGG | 0.633443 | 1_2:+4813185 | Msa0050800:CDS |
| GTTTAGTATGTGATCTTCAG+CGG | 0.633912 | 1_2:-4811497 | None:intergenic |
| AATCTTGCAGTGTGATCCAG+AGG | 0.643554 | 1_2:+4813110 | Msa0050800:intron |
| GTCATCGGAGAGGGTTTGTG+CGG | 0.646567 | 1_2:-4811434 | None:intergenic |
| CGGAGTTGGTGTCATCGGAG+AGG | 0.647919 | 1_2:-4811444 | None:intergenic |
| ACAATTAGCTACCTGCAAGA+GGG | 0.660807 | 1_2:-4813353 | None:intergenic |
| GCTTGTGGATTGTGATCATG+TGG | 0.675150 | 1_2:+4812064 | Msa0050800:CDS |
| GAAAAGGACTATGCTTACAC+CGG | 0.677300 | 1_2:+4813219 | Msa0050800:CDS |
| CGAAGAGGAAGAGTGCGATG+AGG | 0.679065 | 1_2:-4811396 | None:intergenic |
| TCCTACTAACAATCTCCCAG+AGG | 0.684912 | 1_2:+4811771 | Msa0050800:CDS |
| GAATACATACTCCAGTCTGG+GGG | 0.711512 | 1_2:+4813186 | Msa0050800:CDS |
| TCAGTCCAAGAAACTGACGA+CGG | 0.796203 | 1_2:-4811702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTAATTTTCTTTTATATT+TGG | + | chr1_2:4811852-4811871 | Msa0050800:intron | 10.0% |
| !! | AACAAAAATTTAAACAAAAA+AGG | - | chr1_2:4812114-4812133 | None:intergenic | 10.0% |
| !! | TTTGTTTATTTATTTAAATG+TGG | + | chr1_2:4812298-4812317 | Msa0050800:intron | 10.0% |
| !! | TAGCATAAATAATAATATTA+TGG | - | chr1_2:4812901-4812920 | None:intergenic | 10.0% |
| !!! | TACTAATTTTCTTTTATATT+TGG | + | chr1_2:4811852-4811871 | Msa0050800:intron | 10.0% |
| !! | AACAAAAATTTAAACAAAAA+AGG | - | chr1_2:4812114-4812133 | None:intergenic | 10.0% |
| !! | TTTGTTTATTTATTTAAATG+TGG | + | chr1_2:4812298-4812317 | Msa0050800:intron | 10.0% |
| !! | TAGCATAAATAATAATATTA+TGG | - | chr1_2:4812901-4812920 | None:intergenic | 10.0% |
| !!! | ATTTTCTTTTATATTTGGAA+CGG | + | chr1_2:4811857-4811876 | Msa0050800:intron | 15.0% |
| !! | AATTGAATTGAATCAATAAT+TGG | + | chr1_2:4812201-4812220 | Msa0050800:intron | 15.0% |
| !! | AAATAATAATATTATGGATG+AGG | - | chr1_2:4812895-4812914 | None:intergenic | 15.0% |
| !! | AAACAAAAACATCAAAATAA+GGG | - | chr1_2:4812950-4812969 | None:intergenic | 15.0% |
| !! | TAAACAAAAACATCAAAATA+AGG | - | chr1_2:4812951-4812970 | None:intergenic | 15.0% |
| !!! | TTAATTTTATAGTGATGTAA+AGG | + | chr1_2:4812968-4812987 | Msa0050800:intron | 15.0% |
| !!! | TATCTTTTAGCATAAAAAAA+TGG | - | chr1_2:4813048-4813067 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTATATTTGGAA+CGG | + | chr1_2:4811857-4811876 | Msa0050800:intron | 15.0% |
| !! | AATTGAATTGAATCAATAAT+TGG | + | chr1_2:4812201-4812220 | Msa0050800:intron | 15.0% |
| !! | AAATAATAATATTATGGATG+AGG | - | chr1_2:4812895-4812914 | None:intergenic | 15.0% |
| !! | AAACAAAAACATCAAAATAA+GGG | - | chr1_2:4812950-4812969 | None:intergenic | 15.0% |
| !! | TAAACAAAAACATCAAAATA+AGG | - | chr1_2:4812951-4812970 | None:intergenic | 15.0% |
| !!! | TTAATTTTATAGTGATGTAA+AGG | + | chr1_2:4812968-4812987 | Msa0050800:intron | 15.0% |
| !!! | TATCTTTTAGCATAAAAAAA+TGG | - | chr1_2:4813048-4813067 | None:intergenic | 15.0% |
| !! | TTAATGATTAAGCATGATTA+TGG | + | chr1_2:4811904-4811923 | Msa0050800:intron | 20.0% |
| !!! | ATTGATGATTTGTTTTGATT+TGG | + | chr1_2:4811934-4811953 | Msa0050800:intron | 20.0% |
| !!! | TTTGTTTAAATTTTTGTTGC+AGG | + | chr1_2:4812116-4812135 | Msa0050800:intron | 20.0% |
| !! | TTCAATTCAATTCATGAATT+AGG | - | chr1_2:4812193-4812212 | None:intergenic | 20.0% |
| !!! | AGTACTTTCATTTTTAAAGA+TGG | + | chr1_2:4812664-4812683 | Msa0050800:intron | 20.0% |
| !! | GTAATAATCATAATCAAAAG+AGG | - | chr1_2:4812800-4812819 | None:intergenic | 20.0% |
| !! | AACAAAAACATCAAAATAAG+GGG | - | chr1_2:4812949-4812968 | None:intergenic | 20.0% |
| !! | TTAATGATTAAGCATGATTA+TGG | + | chr1_2:4811904-4811923 | Msa0050800:intron | 20.0% |
| !!! | ATTGATGATTTGTTTTGATT+TGG | + | chr1_2:4811934-4811953 | Msa0050800:intron | 20.0% |
| !!! | TTTGTTTAAATTTTTGTTGC+AGG | + | chr1_2:4812116-4812135 | Msa0050800:intron | 20.0% |
| !! | TTCAATTCAATTCATGAATT+AGG | - | chr1_2:4812193-4812212 | None:intergenic | 20.0% |
| !!! | AGTACTTTCATTTTTAAAGA+TGG | + | chr1_2:4812664-4812683 | Msa0050800:intron | 20.0% |
| !! | GTAATAATCATAATCAAAAG+AGG | - | chr1_2:4812800-4812819 | None:intergenic | 20.0% |
| !! | AACAAAAACATCAAAATAAG+GGG | - | chr1_2:4812949-4812968 | None:intergenic | 20.0% |
| !! | CACTAAATTTTCCGATTTAA+CGG | + | chr1_2:4811669-4811688 | Msa0050800:CDS | 25.0% |
| !!! | TCTTTTTATTTTGGTGTGTA+TGG | + | chr1_2:4812140-4812159 | Msa0050800:intron | 25.0% |
| ! | GTTTGTGGTTATTATTTGTT+TGG | + | chr1_2:4812162-4812181 | Msa0050800:intron | 25.0% |
| !!! | AATTTGTTAATCCAAAGAGA+TGG | + | chr1_2:4812393-4812412 | Msa0050800:intron | 25.0% |
| ! | GACTCTAATTATTGTAAAGA+GGG | - | chr1_2:4812726-4812745 | None:intergenic | 25.0% |
| ! | AGACTCTAATTATTGTAAAG+AGG | - | chr1_2:4812727-4812746 | None:intergenic | 25.0% |
| ! | CATTAATTAATATGCATCGA+TGG | - | chr1_2:4813084-4813103 | None:intergenic | 25.0% |
| ! | CATCGATGCATATTAATTAA+TGG | + | chr1_2:4813082-4813101 | Msa0050800:intron | 25.0% |
| !! | CACTAAATTTTCCGATTTAA+CGG | + | chr1_2:4811669-4811688 | Msa0050800:CDS | 25.0% |
| !!! | TCTTTTTATTTTGGTGTGTA+TGG | + | chr1_2:4812140-4812159 | Msa0050800:intron | 25.0% |
| ! | GTTTGTGGTTATTATTTGTT+TGG | + | chr1_2:4812162-4812181 | Msa0050800:intron | 25.0% |
| !!! | AATTTGTTAATCCAAAGAGA+TGG | + | chr1_2:4812393-4812412 | Msa0050800:intron | 25.0% |
| ! | GACTCTAATTATTGTAAAGA+GGG | - | chr1_2:4812726-4812745 | None:intergenic | 25.0% |
| ! | AGACTCTAATTATTGTAAAG+AGG | - | chr1_2:4812727-4812746 | None:intergenic | 25.0% |
| ! | CATTAATTAATATGCATCGA+TGG | - | chr1_2:4813084-4813103 | None:intergenic | 25.0% |
| ! | CATCGATGCATATTAATTAA+TGG | + | chr1_2:4813082-4813101 | Msa0050800:intron | 25.0% |
| AGATTGTTAGTAGGAAGAAT+CGG | - | chr1_2:4811766-4811785 | None:intergenic | 30.0% | |
| !!! | TGTTTTGATTTGGTGTGATT+AGG | + | chr1_2:4811944-4811963 | Msa0050800:intron | 30.0% |
| !!! | GTTTTGATTTGGTGTGATTA+GGG | + | chr1_2:4811945-4811964 | Msa0050800:intron | 30.0% |
| TTTGGAAGGAGCAAATTATT+TGG | + | chr1_2:4812007-4812026 | Msa0050800:CDS | 30.0% | |
| !! | GTTGCAGGTTCTTTTTATTT+TGG | + | chr1_2:4812131-4812150 | Msa0050800:intron | 30.0% |
| TTCTTCAGATGTTCTGTTAT+TGG | + | chr1_2:4812238-4812257 | Msa0050800:intron | 30.0% | |
| ! | TTAAATGTGGATTACAAACC+TGG | + | chr1_2:4812311-4812330 | Msa0050800:intron | 30.0% |
| !!! | TGGAACCATTTGTTTTAGAA+TGG | + | chr1_2:4812413-4812432 | Msa0050800:intron | 30.0% |
| !! | GACAACCATTCTAAAACAAA+TGG | - | chr1_2:4812421-4812440 | None:intergenic | 30.0% |
| GATCATAATGTGTTCCTATA+TGG | + | chr1_2:4812509-4812528 | Msa0050800:intron | 30.0% | |
| ! | TTCTTCTTAAGCTGTTTCAA+CGG | + | chr1_2:4812582-4812601 | Msa0050800:intron | 30.0% |
| TTATGGATGAGGATAAAACT+CGG | - | chr1_2:4812884-4812903 | None:intergenic | 30.0% | |
| ! | TAATTAATATGCATCGATGG+TGG | - | chr1_2:4813081-4813100 | None:intergenic | 30.0% |
| TTACTAGATTTGCAGCAATT+TGG | - | chr1_2:4813326-4813345 | None:intergenic | 30.0% | |
| AGATTGTTAGTAGGAAGAAT+CGG | - | chr1_2:4811766-4811785 | None:intergenic | 30.0% | |
| !!! | TGTTTTGATTTGGTGTGATT+AGG | + | chr1_2:4811944-4811963 | Msa0050800:intron | 30.0% |
| !!! | GTTTTGATTTGGTGTGATTA+GGG | + | chr1_2:4811945-4811964 | Msa0050800:intron | 30.0% |
| TTTGGAAGGAGCAAATTATT+TGG | + | chr1_2:4812007-4812026 | Msa0050800:CDS | 30.0% | |
| !! | GTTGCAGGTTCTTTTTATTT+TGG | + | chr1_2:4812131-4812150 | Msa0050800:intron | 30.0% |
| TTCTTCAGATGTTCTGTTAT+TGG | + | chr1_2:4812238-4812257 | Msa0050800:intron | 30.0% | |
| ! | TTAAATGTGGATTACAAACC+TGG | + | chr1_2:4812311-4812330 | Msa0050800:intron | 30.0% |
| !!! | TGGAACCATTTGTTTTAGAA+TGG | + | chr1_2:4812413-4812432 | Msa0050800:intron | 30.0% |
| !! | GACAACCATTCTAAAACAAA+TGG | - | chr1_2:4812421-4812440 | None:intergenic | 30.0% |
| GATCATAATGTGTTCCTATA+TGG | + | chr1_2:4812509-4812528 | Msa0050800:intron | 30.0% | |
| ! | TTCTTCTTAAGCTGTTTCAA+CGG | + | chr1_2:4812582-4812601 | Msa0050800:intron | 30.0% |
| TTATGGATGAGGATAAAACT+CGG | - | chr1_2:4812884-4812903 | None:intergenic | 30.0% | |
| ! | TAATTAATATGCATCGATGG+TGG | - | chr1_2:4813081-4813100 | None:intergenic | 30.0% |
| TTACTAGATTTGCAGCAATT+TGG | - | chr1_2:4813326-4813345 | None:intergenic | 30.0% | |
| GTTTAGTATGTGATCTTCAG+CGG | - | chr1_2:4811500-4811519 | None:intergenic | 35.0% | |
| ! | GAAGAACATGATTACCGATT+TGG | + | chr1_2:4811577-4811596 | Msa0050800:CDS | 35.0% |
| ! | TTGATTTGAACACGCCAAAT+CGG | - | chr1_2:4811594-4811613 | None:intergenic | 35.0% |
| ! | TTTTAGTACAACTGGAGCTT+TGG | + | chr1_2:4811989-4812008 | Msa0050800:CDS | 35.0% |
| !! | ATTTTGGTGTGTATGGTTTG+TGG | + | chr1_2:4812147-4812166 | Msa0050800:intron | 35.0% |
| ACTGAATTGAACCAACATCT+TGG | + | chr1_2:4812337-4812356 | Msa0050800:intron | 35.0% | |
| AACAAATGGTTCCATCTCTT+TGG | - | chr1_2:4812407-4812426 | None:intergenic | 35.0% | |
| GATTCAACTCTACTCCATAT+AGG | - | chr1_2:4812526-4812545 | None:intergenic | 35.0% | |
| TAAGAAGAATCCAACCAAAC+AGG | - | chr1_2:4812571-4812590 | None:intergenic | 35.0% | |
| ! | TCTTCTTAAGCTGTTTCAAC+GGG | + | chr1_2:4812583-4812602 | Msa0050800:intron | 35.0% |
| !!! | GACTGAGTTTTTTAAACCTG+AGG | + | chr1_2:4812841-4812860 | Msa0050800:intron | 35.0% |
| TTTAAACCTGAGGTCAAAGA+TGG | + | chr1_2:4812851-4812870 | Msa0050800:intron | 35.0% | |
| TTAAACCTGAGGTCAAAGAT+GGG | + | chr1_2:4812852-4812871 | Msa0050800:intron | 35.0% | |
| ACATGAGAATACAACAAGCA+TGG | - | chr1_2:4813020-4813039 | None:intergenic | 35.0% | |
| AACGACACTGAAGTTAGATA+CGG | - | chr1_2:4813289-4813308 | None:intergenic | 35.0% | |
| GCTGCAAATCTAGTAAAGAA+TGG | + | chr1_2:4813330-4813349 | Msa0050800:CDS | 35.0% | |
| GTTTAGTATGTGATCTTCAG+CGG | - | chr1_2:4811500-4811519 | None:intergenic | 35.0% | |
| ! | GAAGAACATGATTACCGATT+TGG | + | chr1_2:4811577-4811596 | Msa0050800:CDS | 35.0% |
| ! | TTGATTTGAACACGCCAAAT+CGG | - | chr1_2:4811594-4811613 | None:intergenic | 35.0% |
| ! | TTTTAGTACAACTGGAGCTT+TGG | + | chr1_2:4811989-4812008 | Msa0050800:CDS | 35.0% |
| !! | ATTTTGGTGTGTATGGTTTG+TGG | + | chr1_2:4812147-4812166 | Msa0050800:intron | 35.0% |
| ACTGAATTGAACCAACATCT+TGG | + | chr1_2:4812337-4812356 | Msa0050800:intron | 35.0% | |
| AACAAATGGTTCCATCTCTT+TGG | - | chr1_2:4812407-4812426 | None:intergenic | 35.0% | |
| GATTCAACTCTACTCCATAT+AGG | - | chr1_2:4812526-4812545 | None:intergenic | 35.0% | |
| TAAGAAGAATCCAACCAAAC+AGG | - | chr1_2:4812571-4812590 | None:intergenic | 35.0% | |
| ! | TCTTCTTAAGCTGTTTCAAC+GGG | + | chr1_2:4812583-4812602 | Msa0050800:intron | 35.0% |
| !!! | GACTGAGTTTTTTAAACCTG+AGG | + | chr1_2:4812841-4812860 | Msa0050800:intron | 35.0% |
| TTTAAACCTGAGGTCAAAGA+TGG | + | chr1_2:4812851-4812870 | Msa0050800:intron | 35.0% | |
| TTAAACCTGAGGTCAAAGAT+GGG | + | chr1_2:4812852-4812871 | Msa0050800:intron | 35.0% | |
| ACATGAGAATACAACAAGCA+TGG | - | chr1_2:4813020-4813039 | None:intergenic | 35.0% | |
| AACGACACTGAAGTTAGATA+CGG | - | chr1_2:4813289-4813308 | None:intergenic | 35.0% | |
| GCTGCAAATCTAGTAAAGAA+TGG | + | chr1_2:4813330-4813349 | Msa0050800:CDS | 35.0% | |
| !! | ATCTCCCAGAGGATTTTGAT+TGG | + | chr1_2:4811782-4811801 | Msa0050800:CDS | 40.0% |
| ! | TGTTGGGCTTTTAGTACAAC+TGG | + | chr1_2:4811981-4812000 | Msa0050800:CDS | 40.0% |
| GAGCAAATTATTTGGCGACT+GGG | + | chr1_2:4812015-4812034 | Msa0050800:CDS | 40.0% | |
| TTGGTTCAATTCAGTTCACC+AGG | - | chr1_2:4812332-4812351 | None:intergenic | 40.0% | |
| AACCAACATCTTGGTTGAGT+TGG | + | chr1_2:4812346-4812365 | Msa0050800:intron | 40.0% | |
| AACCAACTCAACCAAGATGT+TGG | - | chr1_2:4812351-4812370 | None:intergenic | 40.0% | |
| !! | CATCTTGGTTGAGTTGGTTA+TGG | + | chr1_2:4812352-4812371 | Msa0050800:intron | 40.0% |
| !! | TGGTTGAGTTGGTTATGGTT+TGG | + | chr1_2:4812357-4812376 | Msa0050800:intron | 40.0% |
| !! | GGTTGAGTTGGTTATGGTTT+GGG | + | chr1_2:4812358-4812377 | Msa0050800:intron | 40.0% |
| TGGAGTAGAGTTGAATCACT+TGG | + | chr1_2:4812529-4812548 | Msa0050800:intron | 40.0% | |
| AAGAATCCAACCAAACAGGT+AGG | - | chr1_2:4812567-4812586 | None:intergenic | 40.0% | |
| TAGAGTCTGAGAAAGACTTG+AGG | + | chr1_2:4812739-4812758 | Msa0050800:intron | 40.0% | |
| CTTGAGGACTTCCTTAAGAT+CGG | + | chr1_2:4812755-4812774 | Msa0050800:intron | 40.0% | |
| ! | ACTTCCTTAAGATCGGTTCT+GGG | + | chr1_2:4812762-4812781 | Msa0050800:intron | 40.0% |
| TCACAAGAATTACGTTCCTC+TGG | - | chr1_2:4813129-4813148 | None:intergenic | 40.0% | |
| GAACGTAATTCTTGTGACTC+TGG | + | chr1_2:4813132-4813151 | Msa0050800:CDS | 40.0% | |
| TTCGAATACATACTCCAGTC+TGG | + | chr1_2:4813183-4813202 | Msa0050800:CDS | 40.0% | |
| TCGAATACATACTCCAGTCT+GGG | + | chr1_2:4813184-4813203 | Msa0050800:CDS | 40.0% | |
| GAAAAGGACTATGCTTACAC+CGG | + | chr1_2:4813219-4813238 | Msa0050800:CDS | 40.0% | |
| !! | CTTGCTTTTGTCAAACTTGC+AGG | - | chr1_2:4813256-4813275 | None:intergenic | 40.0% |
| !! | ATCTCCCAGAGGATTTTGAT+TGG | + | chr1_2:4811782-4811801 | Msa0050800:CDS | 40.0% |
| ! | TGTTGGGCTTTTAGTACAAC+TGG | + | chr1_2:4811981-4812000 | Msa0050800:CDS | 40.0% |
| GAGCAAATTATTTGGCGACT+GGG | + | chr1_2:4812015-4812034 | Msa0050800:CDS | 40.0% | |
| TTGGTTCAATTCAGTTCACC+AGG | - | chr1_2:4812332-4812351 | None:intergenic | 40.0% | |
| AACCAACATCTTGGTTGAGT+TGG | + | chr1_2:4812346-4812365 | Msa0050800:intron | 40.0% | |
| AACCAACTCAACCAAGATGT+TGG | - | chr1_2:4812351-4812370 | None:intergenic | 40.0% | |
| !! | CATCTTGGTTGAGTTGGTTA+TGG | + | chr1_2:4812352-4812371 | Msa0050800:intron | 40.0% |
| !! | TGGTTGAGTTGGTTATGGTT+TGG | + | chr1_2:4812357-4812376 | Msa0050800:intron | 40.0% |
| !! | GGTTGAGTTGGTTATGGTTT+GGG | + | chr1_2:4812358-4812377 | Msa0050800:intron | 40.0% |
| TGGAGTAGAGTTGAATCACT+TGG | + | chr1_2:4812529-4812548 | Msa0050800:intron | 40.0% | |
| AAGAATCCAACCAAACAGGT+AGG | - | chr1_2:4812567-4812586 | None:intergenic | 40.0% | |
| TAGAGTCTGAGAAAGACTTG+AGG | + | chr1_2:4812739-4812758 | Msa0050800:intron | 40.0% | |
| CTTGAGGACTTCCTTAAGAT+CGG | + | chr1_2:4812755-4812774 | Msa0050800:intron | 40.0% | |
| ! | ACTTCCTTAAGATCGGTTCT+GGG | + | chr1_2:4812762-4812781 | Msa0050800:intron | 40.0% |
| TCACAAGAATTACGTTCCTC+TGG | - | chr1_2:4813129-4813148 | None:intergenic | 40.0% | |
| GAACGTAATTCTTGTGACTC+TGG | + | chr1_2:4813132-4813151 | Msa0050800:CDS | 40.0% | |
| TTCGAATACATACTCCAGTC+TGG | + | chr1_2:4813183-4813202 | Msa0050800:CDS | 40.0% | |
| TCGAATACATACTCCAGTCT+GGG | + | chr1_2:4813184-4813203 | Msa0050800:CDS | 40.0% | |
| GAAAAGGACTATGCTTACAC+CGG | + | chr1_2:4813219-4813238 | Msa0050800:CDS | 40.0% | |
| !! | CTTGCTTTTGTCAAACTTGC+AGG | - | chr1_2:4813256-4813275 | None:intergenic | 40.0% |
| TTGTCGGATGAGAAGATCGT+CGG | - | chr1_2:4811467-4811486 | None:intergenic | 45.0% | |
| GAACTCAGACGCCGTTAAAT+CGG | - | chr1_2:4811683-4811702 | None:intergenic | 45.0% | |
| TCAGTCCAAGAAACTGACGA+CGG | - | chr1_2:4811705-4811724 | None:intergenic | 45.0% | |
| GAACAAACGTCTCCGTTTAC+CGG | + | chr1_2:4811723-4811742 | Msa0050800:CDS | 45.0% | |
| TCCTACTAACAATCTCCCAG+AGG | + | chr1_2:4811771-4811790 | Msa0050800:CDS | 45.0% | |
| ! | TCCTCTGGGAGATTGTTAGT+AGG | - | chr1_2:4811775-4811794 | None:intergenic | 45.0% |
| !!! | GATTTTGATTGGCGCGAGAA+AGG | + | chr1_2:4811793-4811812 | Msa0050800:CDS | 45.0% |
| ATACATGCCTGATCCTTGAC+GGG | - | chr1_2:4811829-4811848 | None:intergenic | 45.0% | |
| GATACATGCCTGATCCTTGA+CGG | - | chr1_2:4811830-4811849 | None:intergenic | 45.0% | |
| TGGTGTGATTAGGGTTCATG+CGG | + | chr1_2:4811954-4811973 | Msa0050800:intron | 45.0% | |
| !! | AGTACAACTGGAGCTTTGGA+AGG | + | chr1_2:4811993-4812012 | Msa0050800:CDS | 45.0% |
| GGAGCAAATTATTTGGCGAC+TGG | + | chr1_2:4812014-4812033 | Msa0050800:CDS | 45.0% | |
| TCTTAGTGAGCAACAGCTTG+TGG | + | chr1_2:4812049-4812068 | Msa0050800:CDS | 45.0% | |
| ! | GCTTGTGGATTGTGATCATG+TGG | + | chr1_2:4812064-4812083 | Msa0050800:CDS | 45.0% |
| TGCAATGAGTCCTACCTGTT+TGG | + | chr1_2:4812554-4812573 | Msa0050800:intron | 45.0% | |
| ATGAGTCCTACCTGTTTGGT+TGG | + | chr1_2:4812558-4812577 | Msa0050800:intron | 45.0% | |
| AAAGAGGGAGTGAGCACTTT+AGG | - | chr1_2:4812711-4812730 | None:intergenic | 45.0% | |
| ! | GACTTCCTTAAGATCGGTTC+TGG | + | chr1_2:4812761-4812780 | Msa0050800:intron | 45.0% |
| GTTTCCCAGAACCGATCTTA+AGG | - | chr1_2:4812769-4812788 | None:intergenic | 45.0% | |
| AATCTTGCAGTGTGATCCAG+AGG | + | chr1_2:4813110-4813129 | Msa0050800:intron | 45.0% | |
| TCTTGTGACTCTGGCTGTAA+CGG | + | chr1_2:4813141-4813160 | Msa0050800:CDS | 45.0% | |
| CGAATACATACTCCAGTCTG+GGG | + | chr1_2:4813185-4813204 | Msa0050800:CDS | 45.0% | |
| GAATACATACTCCAGTCTGG+GGG | + | chr1_2:4813186-4813205 | Msa0050800:CDS | 45.0% | |
| TATGCTTACACCGGAAGAGA+TGG | + | chr1_2:4813228-4813247 | Msa0050800:CDS | 45.0% | |
| TTGTCGGATGAGAAGATCGT+CGG | - | chr1_2:4811467-4811486 | None:intergenic | 45.0% | |
| GAACTCAGACGCCGTTAAAT+CGG | - | chr1_2:4811683-4811702 | None:intergenic | 45.0% | |
| TCAGTCCAAGAAACTGACGA+CGG | - | chr1_2:4811705-4811724 | None:intergenic | 45.0% | |
| GAACAAACGTCTCCGTTTAC+CGG | + | chr1_2:4811723-4811742 | Msa0050800:CDS | 45.0% | |
| TCCTACTAACAATCTCCCAG+AGG | + | chr1_2:4811771-4811790 | Msa0050800:CDS | 45.0% | |
| ! | TCCTCTGGGAGATTGTTAGT+AGG | - | chr1_2:4811775-4811794 | None:intergenic | 45.0% |
| !!! | GATTTTGATTGGCGCGAGAA+AGG | + | chr1_2:4811793-4811812 | Msa0050800:CDS | 45.0% |
| ATACATGCCTGATCCTTGAC+GGG | - | chr1_2:4811829-4811848 | None:intergenic | 45.0% | |
| GATACATGCCTGATCCTTGA+CGG | - | chr1_2:4811830-4811849 | None:intergenic | 45.0% | |
| TGGTGTGATTAGGGTTCATG+CGG | + | chr1_2:4811954-4811973 | Msa0050800:intron | 45.0% | |
| !! | AGTACAACTGGAGCTTTGGA+AGG | + | chr1_2:4811993-4812012 | Msa0050800:CDS | 45.0% |
| GGAGCAAATTATTTGGCGAC+TGG | + | chr1_2:4812014-4812033 | Msa0050800:CDS | 45.0% | |
| TCTTAGTGAGCAACAGCTTG+TGG | + | chr1_2:4812049-4812068 | Msa0050800:CDS | 45.0% | |
| ! | GCTTGTGGATTGTGATCATG+TGG | + | chr1_2:4812064-4812083 | Msa0050800:CDS | 45.0% |
| TGCAATGAGTCCTACCTGTT+TGG | + | chr1_2:4812554-4812573 | Msa0050800:intron | 45.0% | |
| ATGAGTCCTACCTGTTTGGT+TGG | + | chr1_2:4812558-4812577 | Msa0050800:intron | 45.0% | |
| AAAGAGGGAGTGAGCACTTT+AGG | - | chr1_2:4812711-4812730 | None:intergenic | 45.0% | |
| ! | GACTTCCTTAAGATCGGTTC+TGG | + | chr1_2:4812761-4812780 | Msa0050800:intron | 45.0% |
| GTTTCCCAGAACCGATCTTA+AGG | - | chr1_2:4812769-4812788 | None:intergenic | 45.0% | |
| AATCTTGCAGTGTGATCCAG+AGG | + | chr1_2:4813110-4813129 | Msa0050800:intron | 45.0% | |
| TCTTGTGACTCTGGCTGTAA+CGG | + | chr1_2:4813141-4813160 | Msa0050800:CDS | 45.0% | |
| CGAATACATACTCCAGTCTG+GGG | + | chr1_2:4813185-4813204 | Msa0050800:CDS | 45.0% | |
| GAATACATACTCCAGTCTGG+GGG | + | chr1_2:4813186-4813205 | Msa0050800:CDS | 45.0% | |
| TATGCTTACACCGGAAGAGA+TGG | + | chr1_2:4813228-4813247 | Msa0050800:CDS | 45.0% | |
| GAGTGCGATGAGGAAACGAT+GGG | - | chr1_2:4811389-4811408 | None:intergenic | 50.0% | |
| AGAGTGCGATGAGGAAACGA+TGG | - | chr1_2:4811390-4811409 | None:intergenic | 50.0% | |
| !! | ATCGTCGGAGTTGGTGTCAT+CGG | - | chr1_2:4811452-4811471 | None:intergenic | 50.0% |
| GATGAGAAGATCGTCGGAGT+TGG | - | chr1_2:4811461-4811480 | None:intergenic | 50.0% | |
| CTTGATCCTTCTGCGCAACA+CGG | + | chr1_2:4811643-4811662 | Msa0050800:CDS | 50.0% | |
| GAGTTCCGTCGTCAGTTTCT+TGG | + | chr1_2:4811697-4811716 | Msa0050800:CDS | 50.0% | |
| CGCGCCAATCAAAATCCTCT+GGG | - | chr1_2:4811789-4811808 | None:intergenic | 50.0% | |
| TCGCGCCAATCAAAATCCTC+TGG | - | chr1_2:4811790-4811809 | None:intergenic | 50.0% | |
| CACGCTCTGATGTCAACGTA+AGG | + | chr1_2:4812610-4812629 | Msa0050800:intron | 50.0% | |
| ACCTGAGGTCAAAGATGGGT+TGG | + | chr1_2:4812856-4812875 | Msa0050800:intron | 50.0% | |
| TCCAACCCATCTTTGACCTC+AGG | - | chr1_2:4812860-4812879 | None:intergenic | 50.0% | |
| TGGGGGAGTAGTGTCAGAAA+AGG | + | chr1_2:4813203-4813222 | Msa0050800:CDS | 50.0% | |
| CTTGCAGGATCCATCTCTTC+CGG | - | chr1_2:4813241-4813260 | None:intergenic | 50.0% | |
| GTAAAGAATGGCCCTCTTGC+AGG | + | chr1_2:4813342-4813361 | Msa0050800:CDS | 50.0% | |
| GAGTGCGATGAGGAAACGAT+GGG | - | chr1_2:4811389-4811408 | None:intergenic | 50.0% | |
| AGAGTGCGATGAGGAAACGA+TGG | - | chr1_2:4811390-4811409 | None:intergenic | 50.0% | |
| !! | ATCGTCGGAGTTGGTGTCAT+CGG | - | chr1_2:4811452-4811471 | None:intergenic | 50.0% |
| GATGAGAAGATCGTCGGAGT+TGG | - | chr1_2:4811461-4811480 | None:intergenic | 50.0% | |
| CTTGATCCTTCTGCGCAACA+CGG | + | chr1_2:4811643-4811662 | Msa0050800:CDS | 50.0% | |
| GAGTTCCGTCGTCAGTTTCT+TGG | + | chr1_2:4811697-4811716 | Msa0050800:CDS | 50.0% | |
| CGCGCCAATCAAAATCCTCT+GGG | - | chr1_2:4811789-4811808 | None:intergenic | 50.0% | |
| TCGCGCCAATCAAAATCCTC+TGG | - | chr1_2:4811790-4811809 | None:intergenic | 50.0% | |
| CACGCTCTGATGTCAACGTA+AGG | + | chr1_2:4812610-4812629 | Msa0050800:intron | 50.0% | |
| ACCTGAGGTCAAAGATGGGT+TGG | + | chr1_2:4812856-4812875 | Msa0050800:intron | 50.0% | |
| TCCAACCCATCTTTGACCTC+AGG | - | chr1_2:4812860-4812879 | None:intergenic | 50.0% | |
| TGGGGGAGTAGTGTCAGAAA+AGG | + | chr1_2:4813203-4813222 | Msa0050800:CDS | 50.0% | |
| CTTGCAGGATCCATCTCTTC+CGG | - | chr1_2:4813241-4813260 | None:intergenic | 50.0% | |
| GTAAAGAATGGCCCTCTTGC+AGG | + | chr1_2:4813342-4813361 | Msa0050800:CDS | 50.0% | |
| ! | CGAAGAGGAAGAGTGCGATG+AGG | - | chr1_2:4811399-4811418 | None:intergenic | 55.0% |
| GTCATCGGAGAGGGTTTGTG+CGG | - | chr1_2:4811437-4811456 | None:intergenic | 55.0% | |
| !! | GGAGTTGGTGTCATCGGAGA+GGG | - | chr1_2:4811446-4811465 | None:intergenic | 55.0% |
| GCGCAGAAGGATCAAGCTTC+TGG | - | chr1_2:4811639-4811658 | None:intergenic | 55.0% | |
| GTGATTCCGTGTTGCGCAGA+AGG | - | chr1_2:4811652-4811671 | None:intergenic | 55.0% | |
| TCTGAGCGTGAGCCGGTAAA+CGG | - | chr1_2:4811738-4811757 | None:intergenic | 55.0% | |
| !! | TTTACCGGCTCACGCTCAGA+AGG | + | chr1_2:4811738-4811757 | Msa0050800:CDS | 55.0% |
| CTGATCCTTGACGGGAGTGA+CGG | - | chr1_2:4811821-4811840 | None:intergenic | 55.0% | |
| AGGGTTCATGCGGTTCGTGT+TGG | + | chr1_2:4811964-4811983 | Msa0050800:intron | 55.0% | |
| GGGTTCATGCGGTTCGTGTT+GGG | + | chr1_2:4811965-4811984 | Msa0050800:intron | 55.0% | |
| GGGAGTGAGCACTTTAGGCA+TGG | - | chr1_2:4812706-4812725 | None:intergenic | 55.0% | |
| TGTGACTCTGGCTGTAACGG+TGG | + | chr1_2:4813144-4813163 | Msa0050800:CDS | 55.0% | |
| ! | CGAAGAGGAAGAGTGCGATG+AGG | - | chr1_2:4811399-4811418 | None:intergenic | 55.0% |
| GTCATCGGAGAGGGTTTGTG+CGG | - | chr1_2:4811437-4811456 | None:intergenic | 55.0% | |
| !! | GGAGTTGGTGTCATCGGAGA+GGG | - | chr1_2:4811446-4811465 | None:intergenic | 55.0% |
| GCGCAGAAGGATCAAGCTTC+TGG | - | chr1_2:4811639-4811658 | None:intergenic | 55.0% | |
| GTGATTCCGTGTTGCGCAGA+AGG | - | chr1_2:4811652-4811671 | None:intergenic | 55.0% | |
| TCTGAGCGTGAGCCGGTAAA+CGG | - | chr1_2:4811738-4811757 | None:intergenic | 55.0% | |
| !! | TTTACCGGCTCACGCTCAGA+AGG | + | chr1_2:4811738-4811757 | Msa0050800:CDS | 55.0% |
| CTGATCCTTGACGGGAGTGA+CGG | - | chr1_2:4811821-4811840 | None:intergenic | 55.0% | |
| AGGGTTCATGCGGTTCGTGT+TGG | + | chr1_2:4811964-4811983 | Msa0050800:intron | 55.0% | |
| GGGTTCATGCGGTTCGTGTT+GGG | + | chr1_2:4811965-4811984 | Msa0050800:intron | 55.0% | |
| GGGAGTGAGCACTTTAGGCA+TGG | - | chr1_2:4812706-4812725 | None:intergenic | 55.0% | |
| TGTGACTCTGGCTGTAACGG+TGG | + | chr1_2:4813144-4813163 | Msa0050800:CDS | 55.0% | |
| TTGTGCGGCGGTTGCAACAG+CGG | - | chr1_2:4811422-4811441 | None:intergenic | 60.0% | |
| ATCGGAGAGGGTTTGTGCGG+CGG | - | chr1_2:4811434-4811453 | None:intergenic | 60.0% | |
| !! | CGGAGTTGGTGTCATCGGAG+AGG | - | chr1_2:4811447-4811466 | None:intergenic | 60.0% |
| !! | CAGCGGTGTCGACGACTTGT+CGG | - | chr1_2:4811483-4811502 | None:intergenic | 60.0% |
| CGTCACTCCCGTCAAGGATC+AGG | + | chr1_2:4811819-4811838 | Msa0050800:CDS | 60.0% | |
| CTGACACTACTCCCCCAGAC+TGG | - | chr1_2:4813200-4813219 | None:intergenic | 60.0% | |
| TTGTGCGGCGGTTGCAACAG+CGG | - | chr1_2:4811422-4811441 | None:intergenic | 60.0% | |
| ATCGGAGAGGGTTTGTGCGG+CGG | - | chr1_2:4811434-4811453 | None:intergenic | 60.0% | |
| !! | CGGAGTTGGTGTCATCGGAG+AGG | - | chr1_2:4811447-4811466 | None:intergenic | 60.0% |
| !! | CAGCGGTGTCGACGACTTGT+CGG | - | chr1_2:4811483-4811502 | None:intergenic | 60.0% |
| CGTCACTCCCGTCAAGGATC+AGG | + | chr1_2:4811819-4811838 | Msa0050800:CDS | 60.0% | |
| CTGACACTACTCCCCCAGAC+TGG | - | chr1_2:4813200-4813219 | None:intergenic | 60.0% | |
| CGGTTGCAACAGCGGCGAAG+AGG | - | chr1_2:4811414-4811433 | None:intergenic | 65.0% | |
| GGAGCCTTCTGAGCGTGAGC+CGG | - | chr1_2:4811745-4811764 | None:intergenic | 65.0% | |
| ! | AGGTGCCGTCACTCCCGTCA+AGG | + | chr1_2:4811813-4811832 | Msa0050800:CDS | 65.0% |
| CGGTTGCAACAGCGGCGAAG+AGG | - | chr1_2:4811414-4811433 | None:intergenic | 65.0% | |
| GGAGCCTTCTGAGCGTGAGC+CGG | - | chr1_2:4811745-4811764 | None:intergenic | 65.0% | |
| ! | AGGTGCCGTCACTCCCGTCA+AGG | + | chr1_2:4811813-4811832 | Msa0050800:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 4811382 | 4813371 | 4811382 | ID=Msa0050800;Name=Msa0050800 |
| chr1_2 | mRNA | 4811382 | 4813371 | 4811382 | ID=Msa0050800-mRNA-1;Parent=Msa0050800;Name=Msa0050800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|276 |
| chr1_2 | exon | 4811382 | 4811840 | 4811382 | ID=Msa0050800-mRNA-1:exon:1314;Parent=Msa0050800-mRNA-1 |
| chr1_2 | exon | 4811966 | 4812085 | 4811966 | ID=Msa0050800-mRNA-1:exon:1315;Parent=Msa0050800-mRNA-1 |
| chr1_2 | exon | 4813120 | 4813371 | 4813120 | ID=Msa0050800-mRNA-1:exon:1316;Parent=Msa0050800-mRNA-1 |
| chr1_2 | CDS | 4811382 | 4811840 | 4811382 | ID=Msa0050800-mRNA-1:cds;Parent=Msa0050800-mRNA-1 |
| chr1_2 | CDS | 4811966 | 4812085 | 4811966 | ID=Msa0050800-mRNA-1:cds;Parent=Msa0050800-mRNA-1 |
| chr1_2 | CDS | 4813120 | 4813371 | 4813120 | ID=Msa0050800-mRNA-1:cds;Parent=Msa0050800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
