Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882370 | KEH25641.1 | 93.264 | 579 | 17 | 5 | 1 | 577 | 1 | 559 | 0.0 | 1079 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882370 | sp|O23653|AK2_ARATH | 70.693 | 563 | 129 | 4 | 10 | 559 | 4 | 543 | 0.0 | 790 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882370 | A0A072U8D2 | 93.264 | 579 | 17 | 5 | 1 | 577 | 1 | 559 | 0.0 | 1079 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003090 | Msa0882370 | -0.817745 | 2.811475e-52 | -8.615850e-47 |
| Msa0034100 | Msa0882370 | -0.811850 | 5.696689e-51 | -8.615850e-47 |
| Msa0050650 | Msa0882370 | -0.819981 | 8.729976e-53 | -8.615850e-47 |
| Msa0050690 | Msa0882370 | -0.821036 | 4.997594e-53 | -8.615850e-47 |
| Msa0050800 | Msa0882370 | -0.820598 | 6.303117e-53 | -8.615850e-47 |
| Msa0618990 | Msa0882370 | 0.808182 | 3.511483e-50 | -8.615850e-47 |
| Msa0705460 | Msa0882370 | 0.805045 | 1.613489e-49 | -8.615850e-47 |
| Msa0750990 | Msa0882370 | 0.825102 | 5.629528e-54 | -8.615850e-47 |
| Msa0794030 | Msa0882370 | 0.807896 | 4.039681e-50 | -8.615850e-47 |
| Msa0378310 | Msa0882370 | -0.815123 | 1.086147e-51 | -8.615850e-47 |
| Msa0392090 | Msa0882370 | -0.815582 | 8.588850e-52 | -8.615850e-47 |
| Msa0470040 | Msa0882370 | -0.807340 | 5.302632e-50 | -8.615850e-47 |
| Msa0540670 | Msa0882370 | 0.809789 | 1.590351e-50 | -8.615850e-47 |
| Msa0846900 | Msa0882370 | 0.800316 | 1.526328e-48 | -8.615850e-47 |
| Msa0882370 | Msa0926240 | 0.805777 | 1.133389e-49 | -8.615850e-47 |
| Msa0882370 | Msa0932140 | 0.813622 | 2.331426e-51 | -8.615850e-47 |
| Msa0882370 | Msa0932150 | 0.821950 | 3.074049e-53 | -8.615850e-47 |
| Msa0882370 | Msa0947430 | 0.978029 | 5.610399e-145 | -8.615850e-47 |
| Msa0882370 | Msa0965800 | 0.804236 | 2.379590e-49 | -8.615850e-47 |
| Msa0882370 | Msa1053340 | 0.823994 | 1.026561e-53 | -8.615850e-47 |
| Msa0882370 | Msa1095410 | 0.812587 | 3.932435e-51 | -8.615850e-47 |
| Msa0882370 | Msa1132330 | 0.830182 | 3.390924e-55 | -8.615850e-47 |
| Msa0882370 | Msa1142590 | 0.814321 | 1.635459e-51 | -8.615850e-47 |
| Msa0882370 | Msa1197720 | 0.808494 | 3.012778e-50 | -8.615850e-47 |
| Msa0882370 | Msa1429810 | 0.809211 | 2.116373e-50 | -8.615850e-47 |
| Msa0882370 | Msa1462780 | 0.816133 | 6.469956e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882370 | MtrunA17_Chr6g0461951 | 92.919 | 579 | 17 | 6 | 1 | 577 | 1 | 557 | 0.0 | 1071 |
| Msa0882370 | MtrunA17_Chr7g0252051 | 77.883 | 529 | 90 | 4 | 47 | 574 | 51 | 553 | 0.0 | 812 |
| Msa0882370 | MtrunA17_Chr3g0121961 | 26.400 | 500 | 311 | 11 | 84 | 559 | 79 | 545 | 2.88e-43 | 166 |
| Msa0882370 | MtrunA17_Chr8g0377971 | 26.306 | 517 | 314 | 14 | 67 | 556 | 76 | 552 | 7.94e-43 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882370 | AT5G14060.1 | 70.693 | 563 | 129 | 4 | 10 | 559 | 4 | 543 | 0.0 | 790 |
| Msa0882370 | AT5G14060.2 | 70.693 | 563 | 129 | 4 | 10 | 559 | 4 | 543 | 0.0 | 790 |
| Msa0882370 | AT5G13280.1 | 70.326 | 583 | 136 | 7 | 9 | 577 | 5 | 564 | 0.0 | 787 |
| Msa0882370 | AT3G02020.1 | 74.808 | 520 | 100 | 4 | 44 | 559 | 50 | 542 | 0.0 | 775 |
| Msa0882370 | AT5G14060.3 | 68.697 | 476 | 113 | 4 | 10 | 472 | 4 | 456 | 0.0 | 650 |
| Msa0882370 | AT1G31230.1 | 27.309 | 498 | 303 | 12 | 83 | 556 | 85 | 547 | 6.24e-44 | 168 |
| Msa0882370 | AT4G19710.1 | 26.667 | 495 | 308 | 12 | 84 | 556 | 91 | 552 | 4.48e-43 | 165 |
| Msa0882370 | AT4G19710.2 | 26.667 | 495 | 308 | 12 | 84 | 556 | 91 | 552 | 5.36e-43 | 165 |
Find 147 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCATATCTTAATAAAT+TGG | 0.158405 | 6_1:-31489973 | Msa0882370:CDS |
| TCAGCAATCATCATTAATTT+TGG | 0.171390 | 6_1:-31487643 | Msa0882370:CDS |
| CAAGACTATTTAGTTTCTTT+TGG | 0.200197 | 6_1:-31490020 | Msa0882370:CDS |
| TGAGAGTGCCCGGAGCTTTC+GGG | 0.215946 | 6_1:+31488349 | None:intergenic |
| TCTGCTTTCGGGTATATATT+TGG | 0.221487 | 6_1:+31489297 | None:intergenic |
| CCTGCAATTGCAATTGTTAC+TGG | 0.240285 | 6_1:-31489656 | Msa0882370:CDS |
| AGGGGACAGGTTCTGCTTTC+GGG | 0.250446 | 6_1:+31489286 | None:intergenic |
| ATGTATTATAGGGTTCTATT+TGG | 0.289250 | 6_1:-31486778 | Msa0882370:three_prime_UTR |
| AGCCTCGTCAAATGTCAAAA+AGG | 0.289534 | 6_1:+31489266 | None:intergenic |
| ACGACAATTGGGAAAGCATT+AGG | 0.291051 | 6_1:-31489449 | Msa0882370:CDS |
| TTCCGTTGCTAAATCATATT+AGG | 0.296709 | 6_1:-31486979 | Msa0882370:exon |
| GCTGATTAAGTTTATTAATC+AGG | 0.306970 | 6_1:-31486719 | Msa0882370:three_prime_UTR |
| TCTCTGCTCCAGAGCTTTGA+TGG | 0.311721 | 6_1:+31487956 | None:intergenic |
| AAGGGGACAGGTTCTGCTTT+CGG | 0.315453 | 6_1:+31489285 | None:intergenic |
| TTTCTTTCATATTACATTCA+TGG | 0.317505 | 6_1:-31493286 | Msa0882370:exon |
| GTTTATTAATCAGGCTCAAC+TGG | 0.321304 | 6_1:-31486710 | Msa0882370:three_prime_UTR |
| GATAAATGAGAATGTATTAT+AGG | 0.326181 | 6_1:-31486789 | Msa0882370:three_prime_UTR |
| GATTTGACAGCTACGACAAT+TGG | 0.340859 | 6_1:-31489461 | Msa0882370:CDS |
| TAAAATATGTCCAGAGCATC+TGG | 0.343928 | 6_1:-31490102 | Msa0882370:intron |
| GATCTCTCAAGGTGCATCTA+AGG | 0.350683 | 6_1:-31487255 | Msa0882370:intron |
| GCAATTGTTACTGGCTTCCT+TGG | 0.372310 | 6_1:-31489647 | Msa0882370:CDS |
| TTCTGAAGCTCCTTCTTCTC+AGG | 0.373527 | 6_1:-31493430 | Msa0882370:intron |
| CGACAATTGGGAAAGCATTA+GGG | 0.375851 | 6_1:-31489448 | Msa0882370:CDS |
| ATATATTTGGATCACATGTT+AGG | 0.375982 | 6_1:+31489310 | None:intergenic |
| GCAGCATATCTTAATAAATT+GGG | 0.381607 | 6_1:-31489972 | Msa0882370:CDS |
| GATTGTTGTTCTTTCTGCTA+TGG | 0.389325 | 6_1:-31492929 | Msa0882370:CDS |
| TATACATGTGTGATGAAGTT+TGG | 0.390241 | 6_1:-31493027 | Msa0882370:CDS |
| CCAGTAACAATTGCAATTGC+AGG | 0.390513 | 6_1:+31489656 | None:intergenic |
| GAGGAAGAAGGAGGTGAAGG+AGG | 0.391150 | 6_1:-31493063 | Msa0882370:CDS |
| ATAAATGAGAATGTATTATA+GGG | 0.394603 | 6_1:-31486788 | Msa0882370:three_prime_UTR |
| CTTGCTCATATCTCTTTCCT+TGG | 0.398948 | 6_1:+31488323 | None:intergenic |
| TATTAAGAAATAAATCATAT+TGG | 0.403920 | 6_1:-31486497 | Msa0882370:three_prime_UTR |
| ACTTCTGTCTTTAGATTTGT+CGG | 0.422715 | 6_1:-31488933 | Msa0882370:CDS |
| ATTGTTGTTCTTTCTGCTAT+GGG | 0.430911 | 6_1:-31492928 | Msa0882370:CDS |
| TTTCGCGTTCTTCGAACCCT+TGG | 0.434831 | 6_1:-31487293 | Msa0882370:CDS |
| ATAAAATACACAAATGGAAA+TGG | 0.437599 | 6_1:-31487002 | Msa0882370:CDS |
| GAGAAGCACGTGATTGAGAA+TGG | 0.441358 | 6_1:-31493102 | Msa0882370:CDS |
| TTATAAAAGACCTGCATCTC+AGG | 0.442455 | 6_1:-31491193 | Msa0882370:intron |
| TGCAATCTCTTTGCAACAGC+CGG | 0.443468 | 6_1:+31489698 | None:intergenic |
| ATTAGGGTTACCTGAGATCC+AGG | 0.447612 | 6_1:-31489432 | Msa0882370:intron |
| CAAAGAGATTGCATGGCGAT+TGG | 0.447713 | 6_1:-31489688 | Msa0882370:CDS |
| CAGTACGACGCATTTGAGAT+TGG | 0.448466 | 6_1:-31489773 | Msa0882370:CDS |
| TTCCTACAACCCGAAAGCTC+CGG | 0.449275 | 6_1:-31488358 | Msa0882370:CDS |
| AGGAAGAAGGAGGTGAAGGA+GGG | 0.450959 | 6_1:-31493062 | Msa0882370:CDS |
| GAGGAGGAAGAAGGAGGTGA+AGG | 0.451920 | 6_1:-31493066 | Msa0882370:CDS |
| TAGATTTGTCGGTGGTGCTC+AGG | 0.452696 | 6_1:-31488922 | Msa0882370:intron |
| GAATGGGAGGAGTGTGGTTG+AGG | 0.452920 | 6_1:-31493085 | Msa0882370:CDS |
| TGAGCATCAAATATTTATCC+TGG | 0.453819 | 6_1:-31486948 | Msa0882370:three_prime_UTR |
| TGCGGTGTTACTAATGTCTC+TGG | 0.455991 | 6_1:-31491233 | Msa0882370:CDS |
| GAGAGGATGATGGAAGTTGC+TGG | 0.458399 | 6_1:-31492982 | Msa0882370:CDS |
| AGATCCATCATCTCTCTCAT+TGG | 0.459874 | 6_1:-31487672 | Msa0882370:CDS |
| GCTAGCTTACTTTGGTGCTC+AGG | 0.462460 | 6_1:-31489238 | Msa0882370:intron |
| GCCCGGAGCTTTCGGGTTGT+AGG | 0.467599 | 6_1:+31488356 | None:intergenic |
| ACAACAATCGGCCTCTCCTC+CGG | 0.468903 | 6_1:+31492943 | None:intergenic |
| CAAGTGTATACAGAAGCTTC+AGG | 0.469473 | 6_1:-31486828 | Msa0882370:three_prime_UTR |
| TCATGTGCAGTAACAACATT+GGG | 0.469729 | 6_1:-31489497 | Msa0882370:CDS |
| GCTGCTGAGCTAGCTTACTT+TGG | 0.473389 | 6_1:-31489246 | Msa0882370:CDS |
| TGGGAGGAGTGTGGTTGAGG+AGG | 0.474833 | 6_1:-31493082 | Msa0882370:CDS |
| TATGCACAAACCTGGATCTC+AGG | 0.475768 | 6_1:+31489422 | None:intergenic |
| ATTTCCAATGAGAGAGATGA+TGG | 0.483643 | 6_1:+31487668 | None:intergenic |
| CGTTGGATCCATCAAAGCTC+TGG | 0.484664 | 6_1:-31487964 | Msa0882370:CDS |
| TCCAGAGCATCTGGAAGCAC+TGG | 0.487144 | 6_1:-31490093 | Msa0882370:intron |
| ATTTGACAGCTACGACAATT+GGG | 0.487957 | 6_1:-31489460 | Msa0882370:CDS |
| GTATGAGTAGGACTCATAAT+CGG | 0.488238 | 6_1:-31486675 | Msa0882370:three_prime_UTR |
| TTCAGAACTGTGGATCAACT+TGG | 0.498133 | 6_1:-31491062 | Msa0882370:intron |
| TCGCCAGGTGAATATCTCAT+TGG | 0.501642 | 6_1:-31487105 | Msa0882370:intron |
| GTGAGGCAGAGGAATGTGTA+AGG | 0.505130 | 6_1:-31487070 | Msa0882370:CDS |
| ATAGTGAGCACTCGCATGCT+TGG | 0.505310 | 6_1:-31488163 | Msa0882370:CDS |
| GATGATGGAAGTTGCTGGAT+TGG | 0.506291 | 6_1:-31492977 | Msa0882370:CDS |
| TCCTTGGTGATGAGAGTGCC+CGG | 0.508593 | 6_1:+31488339 | None:intergenic |
| TTACAGATAAAATACACAAA+TGG | 0.509745 | 6_1:-31487008 | Msa0882370:CDS |
| AGATTAGAATATATATCTCC+AGG | 0.510345 | 6_1:+31486930 | None:intergenic |
| GGAATATCACCTTCTCTAGC+AGG | 0.510399 | 6_1:+31488396 | None:intergenic |
| TGGTGGTTCGTCAGTTGCGT+CGG | 0.511088 | 6_1:-31493007 | Msa0882370:CDS |
| ACGTGGCAAGTGGTGGAAGA+AGG | 0.512671 | 6_1:+31493211 | None:intergenic |
| TCCTACAACCCGAAAGCTCC+GGG | 0.513596 | 6_1:-31488357 | Msa0882370:CDS |
| TAGAACAACAAAATACTGAT+AGG | 0.514079 | 6_1:+31486586 | None:intergenic |
| TCAGTACGGTTTCCTTGCTA+AGG | 0.514582 | 6_1:-31488140 | Msa0882370:intron |
| AGTAAATGATAGTGAGGCAG+AGG | 0.514607 | 6_1:-31487081 | Msa0882370:CDS |
| AGTGTGGTTGAGGAGGAAGA+AGG | 0.527109 | 6_1:-31493075 | Msa0882370:CDS |
| GATTAATTAACCTGAGAAGA+AGG | 0.528716 | 6_1:+31493420 | None:intergenic |
| TGCGTCGGCGGAGAGGATGA+TGG | 0.529495 | 6_1:-31492992 | Msa0882370:CDS |
| AACAAGAACACGTACTTGGC+GGG | 0.530574 | 6_1:+31489941 | None:intergenic |
| TCTTAATAAATTGGGTGTCA+AGG | 0.530782 | 6_1:-31489964 | Msa0882370:CDS |
| TGTTACTGGCTTCCTTGGAA+AGG | 0.538431 | 6_1:-31489642 | Msa0882370:intron |
| GTGGTTGAGGAGGAAGAAGG+AGG | 0.543505 | 6_1:-31493072 | Msa0882370:CDS |
| TTGGAGAGTGCATGTCCACT+AGG | 0.543790 | 6_1:-31490001 | Msa0882370:CDS |
| ACTCGCATGCTTGGTCAGTA+CGG | 0.544929 | 6_1:-31488154 | Msa0882370:CDS |
| ATAGCAGAAAGAACAACAAT+CGG | 0.545247 | 6_1:+31492931 | None:intergenic |
| AAGGAGCTTCAGAAGAAAGA+AGG | 0.549470 | 6_1:+31493439 | None:intergenic |
| TGGTTCGTCAGTTGCGTCGG+CGG | 0.549574 | 6_1:-31493004 | Msa0882370:CDS |
| ATCATGTGCAGTAACAACAT+TGG | 0.549798 | 6_1:-31489498 | Msa0882370:CDS |
| AGAAGCACGTGATTGAGAAT+GGG | 0.551834 | 6_1:-31493101 | Msa0882370:CDS |
| AGAAGGTGATATTCCAGTAC+GGG | 0.552440 | 6_1:-31488388 | Msa0882370:CDS |
| CTCAATCACACAAGGTTGGA+AGG | 0.555157 | 6_1:+31486870 | None:intergenic |
| ACTGCTCTTACCTGAGATGC+AGG | 0.559867 | 6_1:+31491183 | None:intergenic |
| CAGGTATGGAAGGATGTTGA+TGG | 0.560605 | 6_1:-31489336 | Msa0882370:CDS |
| ATAGCATAATTACCTTTCCA+AGG | 0.564354 | 6_1:+31489630 | None:intergenic |
| AGTCAGTGTTTCCTTGACGT+TGG | 0.565062 | 6_1:-31487981 | Msa0882370:CDS |
| GAGCAGAGAACTAATACAGC+AGG | 0.568041 | 6_1:-31487942 | Msa0882370:CDS |
| TGTAATAGTCTTATAAACTA+CGG | 0.571630 | 6_1:+31486636 | None:intergenic |
| ACATCTCAATCACACAAGGT+TGG | 0.571758 | 6_1:+31486866 | None:intergenic |
| TTCCTAATATGATTTAGCAA+CGG | 0.574635 | 6_1:+31486977 | None:intergenic |
| GAAGGAGTTGAAAATTTGCA+TGG | 0.576781 | 6_1:+31486888 | None:intergenic |
| TTACCTGCATTTCAGAACTG+TGG | 0.577618 | 6_1:-31491072 | Msa0882370:intron |
| AACTGTGGATCAACTTGGAG+TGG | 0.578338 | 6_1:-31491057 | Msa0882370:CDS |
| GAGAAGGTGATATTCCAGTA+CGG | 0.579138 | 6_1:-31488389 | Msa0882370:CDS |
| ACCACTTACGCAGGTATGGA+AGG | 0.583143 | 6_1:-31489346 | Msa0882370:intron |
| ACATGTGTGATGAAGTTTGG+TGG | 0.583186 | 6_1:-31493024 | Msa0882370:CDS |
| GCTGTTGCAAAGAGATTGCA+TGG | 0.587919 | 6_1:-31489695 | Msa0882370:CDS |
| GAAGGTCACGTGCAATGTGT+TGG | 0.588439 | 6_1:-31493124 | Msa0882370:CDS |
| CGTCAGTTGCGTCGGCGGAG+AGG | 0.589117 | 6_1:-31492999 | Msa0882370:CDS |
| ACTGTTCAAATGATCTCTCA+AGG | 0.590004 | 6_1:-31487266 | Msa0882370:CDS |
| ACATTCTCATTTATCAGACG+TGG | 0.599477 | 6_1:+31486797 | None:intergenic |
| ATAGGTCTAATGCAAGTGAC+GGG | 0.600654 | 6_1:+31486604 | None:intergenic |
| TTCTCATTTATCAGACGTGG+AGG | 0.603588 | 6_1:+31486800 | None:intergenic |
| TTTATTAATCAGGCTCAACT+GGG | 0.605838 | 6_1:-31486709 | Msa0882370:three_prime_UTR |
| GCAGTAACAACATTGGGTAG+AGG | 0.608651 | 6_1:-31489491 | Msa0882370:CDS |
| GATAGGTCTAATGCAAGTGA+CGG | 0.610944 | 6_1:+31486603 | None:intergenic |
| TCTCTAGTTCTTCAACAACA+TGG | 0.611032 | 6_1:+31487724 | None:intergenic |
| TCTGTCTTTAGATTTGTCGG+TGG | 0.613712 | 6_1:-31488930 | Msa0882370:CDS |
| TTCTTCCACCACTTGCCACG+TGG | 0.614536 | 6_1:-31493209 | Msa0882370:CDS |
| ATTGGTAGTAAATGATAGTG+AGG | 0.616034 | 6_1:-31487087 | Msa0882370:CDS |
| TCTATGAGACCTGCTAGAGA+AGG | 0.616190 | 6_1:-31488405 | Msa0882370:CDS |
| AACTGATGACTTCACAAATG+CGG | 0.619684 | 6_1:-31489741 | Msa0882370:CDS |
| TGATGCCACGTGGCAAGTGG+TGG | 0.621298 | 6_1:+31493204 | None:intergenic |
| CAGTTTCAAAGAAAGCGTGA+TGG | 0.626196 | 6_1:+31487042 | None:intergenic |
| AGCACGTGATTGAGAATGGG+AGG | 0.627379 | 6_1:-31493098 | Msa0882370:CDS |
| CATCAACTCTCACCTTAGCA+AGG | 0.629028 | 6_1:+31488128 | None:intergenic |
| TGGCAAGTGGTGGAAGAAGG+AGG | 0.637824 | 6_1:+31493214 | None:intergenic |
| GTAACAACATTGGGTAGAGG+TGG | 0.638482 | 6_1:-31489488 | Msa0882370:CDS |
| TCATTTGAACAGTGACACCA+AGG | 0.642740 | 6_1:+31487276 | None:intergenic |
| TGAGGCAGAGGAATGTGTAA+GGG | 0.643775 | 6_1:-31487069 | Msa0882370:CDS |
| GATTGAGAATGGGAGGAGTG+TGG | 0.650280 | 6_1:-31493091 | Msa0882370:CDS |
| GAAACGTAATGTGACCATGT+TGG | 0.655818 | 6_1:-31488188 | Msa0882370:CDS |
| CTTTGATGGATCCAACGTCA+AGG | 0.658976 | 6_1:+31487970 | None:intergenic |
| TGATGATGCCACGTGGCAAG+TGG | 0.661841 | 6_1:+31493201 | None:intergenic |
| TCTCATTTATCAGACGTGGA+GGG | 0.662017 | 6_1:+31486801 | None:intergenic |
| ATATGCTGCAAAGATCCTAG+TGG | 0.664927 | 6_1:+31489986 | None:intergenic |
| TGCTACATCTCAATCACACA+AGG | 0.681290 | 6_1:+31486862 | None:intergenic |
| CAAGGAAAGAGATATGAGCA+AGG | 0.685725 | 6_1:-31488322 | Msa0882370:intron |
| GTGTGATTGAGATGTAGCAA+TGG | 0.695678 | 6_1:-31486858 | Msa0882370:three_prime_UTR |
| CATTTGAACAGTGACACCAA+GGG | 0.697565 | 6_1:+31487277 | None:intergenic |
| AGTGCTCACTATATCCAACA+TGG | 0.704441 | 6_1:+31488174 | None:intergenic |
| CTAGCAGGTCTCATAGACTG+CGG | 0.707348 | 6_1:+31488411 | None:intergenic |
| AGAACTAGAGAAAATCGCTG+TGG | 0.730866 | 6_1:-31487712 | Msa0882370:CDS |
| TCTATGCTGATGATGCCACG+TGG | 0.766622 | 6_1:+31493194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATGTAATAATTTAAAAAA+TGG | + | chr6_1:31488177-31488196 | None:intergenic | 10.0% |
| !! | AAAAAACATAGTATTTATTT+AGG | + | chr6_1:31488680-31488699 | None:intergenic | 10.0% |
| !!! | TTGTTTTGTATTTAAAATTA+TGG | - | chr6_1:31489530-31489549 | Msa0882370:intron | 10.0% |
| !!! | TAATTTTCTGATAAAAAAAA+TGG | - | chr6_1:31490486-31490505 | Msa0882370:intron | 10.0% |
| !! | TTAAATCAATAAAAATAGTA+AGG | + | chr6_1:31492463-31492482 | None:intergenic | 10.0% |
| !! | TATTAAGAAATAAATCATAT+TGG | - | chr6_1:31493539-31493558 | Msa0882370:intron | 10.0% |
| !!! | AATTATTACATGTGTTATTA+TGG | - | chr6_1:31488184-31488203 | Msa0882370:CDS | 15.0% |
| !!! | ATAACACCATTTTAAAATTT+GGG | + | chr6_1:31489351-31489370 | None:intergenic | 15.0% |
| !!! | TATAACACCATTTTAAAATT+TGG | + | chr6_1:31489352-31489371 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTATTTTCAGTT+GGG | - | chr6_1:31491067-31491086 | Msa0882370:intron | 15.0% |
| !!! | TTGTTTCTGTTATAATTTAT+TGG | - | chr6_1:31491146-31491165 | Msa0882370:intron | 15.0% |
| !!! | TAATTTATTGGTCTAATTTT+TGG | - | chr6_1:31491158-31491177 | Msa0882370:intron | 15.0% |
| !! | ACACAAAATCTTATATTAAT+TGG | + | chr6_1:31491469-31491488 | None:intergenic | 15.0% |
| !! | TTCATATCATAATAATTATC+CGG | - | chr6_1:31492490-31492509 | Msa0882370:intron | 15.0% |
| !! | AAATGTTAAAAAGTGAATAA+AGG | + | chr6_1:31492856-31492875 | None:intergenic | 15.0% |
| !! | ATAAATGAGAATGTATTATA+GGG | - | chr6_1:31493248-31493267 | Msa0882370:CDS | 15.0% |
| !!! | ATGTCATTTATAAATTTTAG+TGG | - | chr6_1:31493475-31493494 | Msa0882370:five_prime_UTR | 15.0% |
| !! | TTTCTTTCATATTACATTCA+TGG | - | chr6_1:31486750-31486769 | Msa0882370:three_prime_UTR | 20.0% |
| !! | ATTGAATGTAACTAAATGTA+TGG | - | chr6_1:31487353-31487372 | Msa0882370:intron | 20.0% |
| !! | AAAATTGCGCAATTAAAAAT+AGG | + | chr6_1:31487743-31487762 | None:intergenic | 20.0% |
| !! | GTACTACATACATAATAATA+TGG | + | chr6_1:31488060-31488079 | None:intergenic | 20.0% |
| !!! | AAAATTGGTTTTTACATGTT+TGG | - | chr6_1:31488418-31488437 | Msa0882370:CDS | 20.0% |
| !!! | AAATTGGTTTTTACATGTTT+GGG | - | chr6_1:31488419-31488438 | Msa0882370:CDS | 20.0% |
| !!! | GGAATTAATTTTGTCTAAAT+TGG | - | chr6_1:31488453-31488472 | Msa0882370:intron | 20.0% |
| !!! | ACATAGTATTTATTTAGGAT+CGG | + | chr6_1:31488675-31488694 | None:intergenic | 20.0% |
| !! | ATTATGTTTGTTCTGTTATT+AGG | - | chr6_1:31488760-31488779 | Msa0882370:intron | 20.0% |
| !! | TAAAAAAGGAAGGAAAAAAA+AGG | + | chr6_1:31488884-31488903 | None:intergenic | 20.0% |
| !! | AAATTCATTGTAAAAAAGGA+AGG | + | chr6_1:31488894-31488913 | None:intergenic | 20.0% |
| !! | AGTGAAATTCATTGTAAAAA+AGG | + | chr6_1:31488898-31488917 | None:intergenic | 20.0% |
| !!! | TGATTTGTGTATTTGTTTAT+AGG | - | chr6_1:31489071-31489090 | Msa0882370:intron | 20.0% |
| !!! | GTAAAATAAAAAGAAGTGTT+GGG | + | chr6_1:31490440-31490459 | None:intergenic | 20.0% |
| !!! | AGTAAAATAAAAAGAAGTGT+TGG | + | chr6_1:31490441-31490460 | None:intergenic | 20.0% |
| !!! | GATTTTGTTTTATTTTCAGT+TGG | - | chr6_1:31491066-31491085 | Msa0882370:intron | 20.0% |
| !! | TTGTAAAAAAACATAGTAGA+TGG | - | chr6_1:31491221-31491240 | Msa0882370:CDS | 20.0% |
| !! | ATAGAAAATCAAATTACTAG+AGG | - | chr6_1:31491261-31491280 | Msa0882370:intron | 20.0% |
| !!! | TAATGTCTTTTTGTCAATAA+CGG | + | chr6_1:31491423-31491442 | None:intergenic | 20.0% |
| !!! | TTGACAAAAAGACATTATTT+TGG | - | chr6_1:31491426-31491445 | Msa0882370:intron | 20.0% |
| !!! | TGACAAAAAGACATTATTTT+GGG | - | chr6_1:31491427-31491446 | Msa0882370:intron | 20.0% |
| !!! | ACATGTAAAAGTATAAAAAC+CGG | + | chr6_1:31491970-31491989 | None:intergenic | 20.0% |
| !! | TCAATAAAAATAGTAAGGAT+AGG | + | chr6_1:31492458-31492477 | None:intergenic | 20.0% |
| !! | TCATATCATAATAATTATCC+GGG | - | chr6_1:31492491-31492510 | Msa0882370:intron | 20.0% |
| !!! | CTATGTTTAATTATTTCTGT+TGG | - | chr6_1:31492683-31492702 | Msa0882370:intron | 20.0% |
| !! | ACTGATAAACATTCTATTAT+AGG | - | chr6_1:31492718-31492737 | Msa0882370:intron | 20.0% |
| !! | TTACAGATAAAATACACAAA+TGG | - | chr6_1:31493028-31493047 | Msa0882370:CDS | 20.0% |
| !! | ATAAAATACACAAATGGAAA+TGG | - | chr6_1:31493034-31493053 | Msa0882370:CDS | 20.0% |
| !! | GATAAATGAGAATGTATTAT+AGG | - | chr6_1:31493247-31493266 | Msa0882370:CDS | 20.0% |
| !!! | TGTAATAGTCTTATAAACTA+CGG | + | chr6_1:31493403-31493422 | None:intergenic | 20.0% |
| ! | TATCAGTACTAGGATATAAA+TGG | + | chr6_1:31487478-31487497 | None:intergenic | 25.0% |
| ! | ATCAATTGAAATGATACAAG+AGG | + | chr6_1:31487827-31487846 | None:intergenic | 25.0% |
| ! | AATGGTCAAAATTTGTGAAA+TGG | - | chr6_1:31487956-31487975 | Msa0882370:CDS | 25.0% |
| ! | ATGGTCAAAATTTGTGAAAT+GGG | - | chr6_1:31487957-31487976 | Msa0882370:CDS | 25.0% |
| ! | TGATTCTAGACACATAAAAT+TGG | - | chr6_1:31488403-31488422 | Msa0882370:CDS | 25.0% |
| ! | TTGGATTCTAACTTAAAGTT+AGG | - | chr6_1:31488472-31488491 | Msa0882370:intron | 25.0% |
| ! | GCAGAATTTGAATAAATTTC+TGG | + | chr6_1:31488627-31488646 | None:intergenic | 25.0% |
| !! | TTTTCAACATCAGAAAACAA+AGG | + | chr6_1:31488725-31488744 | None:intergenic | 25.0% |
| !! | TCATATATGAACTCATTTTC+AGG | + | chr6_1:31489489-31489508 | None:intergenic | 25.0% |
| ! | TTTATAAAACACTCATGCAA+GGG | + | chr6_1:31489749-31489768 | None:intergenic | 25.0% |
| !! | AATCGTAACCTTATCAATTT+TGG | - | chr6_1:31489835-31489854 | Msa0882370:intron | 25.0% |
| ! | AAACCATATTGAGAATAAGA+AGG | + | chr6_1:31489862-31489881 | None:intergenic | 25.0% |
| !!! | TTTCATTTTAGTTGCTAACT+TGG | - | chr6_1:31489900-31489919 | Msa0882370:intron | 25.0% |
| !!! | CAAGACTATTTAGTTTCTTT+TGG | - | chr6_1:31490016-31490035 | Msa0882370:CDS | 25.0% |
| ! | TGCAGCATATCTTAATAAAT+TGG | - | chr6_1:31490063-31490082 | Msa0882370:CDS | 25.0% |
| ! | GCAGCATATCTTAATAAATT+GGG | - | chr6_1:31490064-31490083 | Msa0882370:CDS | 25.0% |
| !! | GTTTGTTGCTAATTTATTTC+TGG | - | chr6_1:31490240-31490259 | Msa0882370:intron | 25.0% |
| !!! | TATTTTAGAAGCAACTTATC+CGG | - | chr6_1:31490319-31490338 | Msa0882370:intron | 25.0% |
| !!! | GAACTTGTGTTTTTTCTTAA+AGG | - | chr6_1:31490508-31490527 | Msa0882370:intron | 25.0% |
| ! | ATATATTTGGATCACATGTT+AGG | + | chr6_1:31490729-31490748 | None:intergenic | 25.0% |
| ! | AGTCAGCAAAATTTAAATGT+TGG | - | chr6_1:31490898-31490917 | Msa0882370:intron | 25.0% |
| ! | CAAAATTTAAATGTTGGAGT+TGG | - | chr6_1:31490904-31490923 | Msa0882370:intron | 25.0% |
| !!! | ATTCTTTCAAGTACTTTTTC+TGG | - | chr6_1:31491039-31491058 | Msa0882370:CDS | 25.0% |
| !!! | TAGTTTTGGATTGTAAAGTT+TGG | + | chr6_1:31491311-31491330 | None:intergenic | 25.0% |
| !! | TACTTTTACATGTATACAAC+AGG | - | chr6_1:31491977-31491996 | Msa0882370:intron | 25.0% |
| !! | TTTTCAATCTTCGAAGATTT+AGG | - | chr6_1:31492002-31492021 | Msa0882370:intron | 25.0% |
| !! | TCAGCAATCATCATTAATTT+TGG | - | chr6_1:31492393-31492412 | Msa0882370:intron | 25.0% |
| !!! | ATCATCATTAATTTTGGAGA+AGG | - | chr6_1:31492399-31492418 | Msa0882370:intron | 25.0% |
| ! | AGAAAAAGGTAGAGATAAAA+AGG | + | chr6_1:31492517-31492536 | None:intergenic | 25.0% |
| ! | ATTGCAGAAGAACTTAATAT+TGG | + | chr6_1:31492659-31492678 | None:intergenic | 25.0% |
| ! | TGAGTATACAGTTTATTAAG+TGG | + | chr6_1:31492810-31492829 | None:intergenic | 25.0% |
| !! | TGTGTATTTTATCTGTAAGT+CGG | + | chr6_1:31493026-31493045 | None:intergenic | 25.0% |
| ! | TTCCTAATATGATTTAGCAA+CGG | + | chr6_1:31493062-31493081 | None:intergenic | 25.0% |
| ! | AGATTAGAATATATATCTCC+AGG | + | chr6_1:31493109-31493128 | None:intergenic | 25.0% |
| ! | ATGTATTATAGGGTTCTATT+TGG | - | chr6_1:31493258-31493277 | Msa0882370:CDS | 25.0% |
| ! | GCTGATTAAGTTTATTAATC+AGG | - | chr6_1:31493317-31493336 | Msa0882370:five_prime_UTR | 25.0% |
| !!! | GTAGATTTTTTTGTATGAGT+AGG | - | chr6_1:31493349-31493368 | Msa0882370:intron | 25.0% |
| ! | TAGAACAACAAAATACTGAT+AGG | + | chr6_1:31493453-31493472 | None:intergenic | 25.0% |
| GATTAATTAACCTGAGAAGA+AGG | + | chr6_1:31486619-31486638 | None:intergenic | 30.0% | |
| TTACGAATTTCCGAAAAAAG+CGG | - | chr6_1:31486885-31486904 | Msa0882370:three_prime_UTR | 30.0% | |
| TATACATGTGTGATGAAGTT+TGG | - | chr6_1:31487009-31487028 | Msa0882370:CDS | 30.0% | |
| ATAGCAGAAAGAACAACAAT+CGG | + | chr6_1:31487108-31487127 | None:intergenic | 30.0% | |
| ! | ATTGTTGTTCTTTCTGCTAT+GGG | - | chr6_1:31487108-31487127 | Msa0882370:intron | 30.0% |
| ! | AACTACTAACAAACTTTTGC+TGG | - | chr6_1:31487134-31487153 | Msa0882370:intron | 30.0% |
| AATCAGTACTACTACTACTA+CGG | + | chr6_1:31487199-31487218 | None:intergenic | 30.0% | |
| !! | TCGAAGTTGGTATCAAAAAA+TGG | - | chr6_1:31487389-31487408 | Msa0882370:intron | 30.0% |
| !! | CAATCAAAAGTATCAGTACT+AGG | + | chr6_1:31487488-31487507 | None:intergenic | 30.0% |
| ACATTGAAAGTAATCTTCAG+TGG | - | chr6_1:31487540-31487559 | Msa0882370:intron | 30.0% | |
| TTAACATTGAAAGTCGAAGT+TGG | - | chr6_1:31487655-31487674 | Msa0882370:CDS | 30.0% | |
| !! | AGTCGAAGTTGGTATAAATT+AGG | - | chr6_1:31487666-31487685 | Msa0882370:CDS | 30.0% |
| ! | ATTAGGCTTAAATGCAGTTT+TGG | - | chr6_1:31487683-31487702 | Msa0882370:CDS | 30.0% |
| CAATTGATCTTACTTGATCA+TGG | - | chr6_1:31487839-31487858 | Msa0882370:intron | 30.0% | |
| ATGAAAACAAAGTGGCTATT+TGG | + | chr6_1:31487899-31487918 | None:intergenic | 30.0% | |
| GATCTAACATGAAAACAAAG+TGG | + | chr6_1:31487907-31487926 | None:intergenic | 30.0% | |
| TGGTCAAAATTTGTGAAATG+GGG | - | chr6_1:31487958-31487977 | Msa0882370:CDS | 30.0% | |
| AAAATCGCACAATTAGAATC+AGG | - | chr6_1:31487984-31488003 | Msa0882370:CDS | 30.0% | |
| AAATCGCACAATTAGAATCA+GGG | - | chr6_1:31487985-31488004 | Msa0882370:CDS | 30.0% | |
| !! | TATGTGTCTAGAATCACTTT+TGG | + | chr6_1:31488399-31488418 | None:intergenic | 30.0% |
| TTGTCAAATAGCAGTTATAG+TGG | + | chr6_1:31488575-31488594 | None:intergenic | 30.0% | |
| TGCACACAATATAACATATC+AGG | + | chr6_1:31489121-31489140 | None:intergenic | 30.0% | |
| TCACAACAAAACTAAAGAAG+TGG | + | chr6_1:31489233-31489252 | None:intergenic | 30.0% | |
| TCTGAACATGTGTTTATAAG+TGG | - | chr6_1:31489276-31489295 | Msa0882370:CDS | 30.0% | |
| CTGAACATGTGTTTATAAGT+GGG | - | chr6_1:31489277-31489296 | Msa0882370:CDS | 30.0% | |
| TCTAATTTAACCCTCAAAAC+CGG | + | chr6_1:31489324-31489343 | None:intergenic | 30.0% | |
| !! | GACCAACCCAAATTTTAAAA+TGG | - | chr6_1:31489342-31489361 | Msa0882370:intron | 30.0% |
| !!! | CACCATTTTAAAATTTGGGT+TGG | + | chr6_1:31489347-31489366 | None:intergenic | 30.0% |
| ! | ATATGCATTAGTTTCCATGA+TGG | - | chr6_1:31489717-31489736 | Msa0882370:CDS | 30.0% |
| GTTTATAAAACACTCATGCA+AGG | + | chr6_1:31489750-31489769 | None:intergenic | 30.0% | |
| ATATAATTTAGCTGTTGCTG+TGG | + | chr6_1:31489772-31489791 | None:intergenic | 30.0% | |
| !!! | GTATGCTTTTTCTTGTGAAT+GGG | + | chr6_1:31489798-31489817 | None:intergenic | 30.0% |
| !!! | TGTATGCTTTTTCTTGTGAA+TGG | + | chr6_1:31489799-31489818 | None:intergenic | 30.0% |
| AAGAAGGTCCAAAATTGATA+AGG | + | chr6_1:31489846-31489865 | None:intergenic | 30.0% | |
| TCTTAATAAATTGGGTGTCA+AGG | - | chr6_1:31490072-31490091 | Msa0882370:CDS | 30.0% | |
| TTAGCAACAAACTATGATCA+GGG | + | chr6_1:31490232-31490251 | None:intergenic | 30.0% | |
| ATTAGCAACAAACTATGATC+AGG | + | chr6_1:31490233-31490252 | None:intergenic | 30.0% | |
| ATAGCATAATTACCTTTCCA+AGG | + | chr6_1:31490409-31490428 | None:intergenic | 30.0% | |
| CATTTCAAAATGGAGACAAA+AGG | - | chr6_1:31490651-31490670 | Msa0882370:intron | 30.0% | |
| ACTTCTGTCTTTAGATTTGT+CGG | - | chr6_1:31491103-31491122 | Msa0882370:intron | 30.0% | |
| ACACTAATAATTAACACCAG+AGG | + | chr6_1:31491186-31491205 | None:intergenic | 30.0% | |
| !!! | TGTGATTCTTCGATTAGTTT+TGG | + | chr6_1:31491325-31491344 | None:intergenic | 30.0% |
| TTATTGTGTTAAGCAAGACT+TGG | - | chr6_1:31491769-31491788 | Msa0882370:intron | 30.0% | |
| TTGTCTATGTAAGTTCATCA+GGG | + | chr6_1:31492173-31492192 | None:intergenic | 30.0% | |
| TTTGTCTATGTAAGTTCATC+AGG | + | chr6_1:31492174-31492193 | None:intergenic | 30.0% | |
| !! | ATTAGGTGTTACTTGCAATA+TGG | - | chr6_1:31492204-31492223 | Msa0882370:intron | 30.0% |
| !!! | AGATGATGGATCTATTTTGT+AGG | + | chr6_1:31492357-31492376 | None:intergenic | 30.0% |
| AAATCAGATTATTCAAGCTG+TGG | + | chr6_1:31492605-31492624 | None:intergenic | 30.0% | |
| ! | ATTGGTAGTAAATGATAGTG+AGG | - | chr6_1:31492949-31492968 | Msa0882370:CDS | 30.0% |
| TTCCGTTGCTAAATCATATT+AGG | - | chr6_1:31493057-31493076 | Msa0882370:CDS | 30.0% | |
| TGAGCATCAAATATTTATCC+TGG | - | chr6_1:31493088-31493107 | Msa0882370:CDS | 30.0% | |
| TTTATTAATCAGGCTCAACT+GGG | - | chr6_1:31493327-31493346 | Msa0882370:five_prime_UTR | 30.0% | |
| ATGTGATTTGAGAAGAAGGA+AGG | + | chr6_1:31486525-31486544 | None:intergenic | 35.0% | |
| GTGAATGTGATTTGAGAAGA+AGG | + | chr6_1:31486529-31486548 | None:intergenic | 35.0% | |
| !!! | TGGATTGGTTATGAGTTTTC+CGG | - | chr6_1:31487074-31487093 | Msa0882370:CDS | 35.0% |
| ! | GATTGTTGTTCTTTCTGCTA+TGG | - | chr6_1:31487107-31487126 | Msa0882370:intron | 35.0% |
| CAATGTCAAATACGTGTCAT+TGG | - | chr6_1:31487278-31487297 | Msa0882370:CDS | 35.0% | |
| TTGACATTGAAAGTCGAAGT+TGG | - | chr6_1:31487376-31487395 | Msa0882370:intron | 35.0% | |
| CAATGTCAATGACATGTATC+TGG | + | chr6_1:31487526-31487545 | None:intergenic | 35.0% | |
| !! | AATTGCGATTCGGTCAAAAT+AGG | + | chr6_1:31487713-31487732 | None:intergenic | 35.0% |
| ! | TTTTGACCGAATCGCAATTT+TGG | - | chr6_1:31487714-31487733 | Msa0882370:CDS | 35.0% |
| TGTCACGTCATCAAATTGAA+TGG | - | chr6_1:31487938-31487957 | Msa0882370:CDS | 35.0% | |
| ! | TTTTGGCCAAACCACAATTT+TGG | + | chr6_1:31488013-31488032 | None:intergenic | 35.0% |
| ! | AATTGTGGTTTGGCCAAAAT+AGG | - | chr6_1:31488014-31488033 | Msa0882370:CDS | 35.0% |
| ! | ATTGTGGTTTGGCCAAAATA+GGG | - | chr6_1:31488015-31488034 | Msa0882370:CDS | 35.0% |
| ! | GTACTGACACTTCATATTGA+AGG | - | chr6_1:31488076-31488095 | Msa0882370:intron | 35.0% |
| ! | ACTTCATATTGAAGGCACAT+CGG | - | chr6_1:31488084-31488103 | Msa0882370:intron | 35.0% |
| AAATCTGCGTAATGTGTGTT+TGG | - | chr6_1:31488356-31488375 | Msa0882370:CDS | 35.0% | |
| !! | GTAATGTGTGTTTGGTTTGA+TGG | - | chr6_1:31488364-31488383 | Msa0882370:CDS | 35.0% |
| !! | TTGGTTTTTACATGTTTGGG+TGG | - | chr6_1:31488422-31488441 | Msa0882370:CDS | 35.0% |
| ATTCAAATTCTGCACTGCTA+TGG | - | chr6_1:31488634-31488653 | Msa0882370:intron | 35.0% | |
| TGTTTGTTCTGTTATTAGGC+TGG | - | chr6_1:31488764-31488783 | Msa0882370:intron | 35.0% | |
| TTATAAAAGACCTGCATCTC+AGG | - | chr6_1:31488843-31488862 | Msa0882370:intron | 35.0% | |
| CAGCAATACTTGTAGCATTA+TGG | - | chr6_1:31489139-31489158 | Msa0882370:intron | 35.0% | |
| !! | TTTTGTTGTGAGTCTTGCAA+TGG | - | chr6_1:31489242-31489261 | Msa0882370:CDS | 35.0% |
| ATATCGCTAATCTCACAAAC+CGG | - | chr6_1:31489302-31489321 | Msa0882370:CDS | 35.0% | |
| ! | CACATCTAGAACTAGACATT+TGG | + | chr6_1:31489426-31489445 | None:intergenic | 35.0% |
| !! | AATGTCTAGTTCTAGATGTG+AGG | - | chr6_1:31489426-31489445 | Msa0882370:intron | 35.0% |
| !! | ATGTCTAGTTCTAGATGTGA+GGG | - | chr6_1:31489427-31489446 | Msa0882370:intron | 35.0% |
| TCCTCGGTTTACAAATTTCT+GGG | + | chr6_1:31489583-31489602 | None:intergenic | 35.0% | |
| GGACCTTCTTATTCTCAATA+TGG | - | chr6_1:31489856-31489875 | Msa0882370:intron | 35.0% | |
| ! | TAAAATATGTCCAGAGCATC+TGG | - | chr6_1:31489934-31489953 | Msa0882370:intron | 35.0% |
| AAACAACAAGAACACGTACT+TGG | + | chr6_1:31490102-31490121 | None:intergenic | 35.0% | |
| AACTGATGACTTCACAAATG+CGG | - | chr6_1:31490295-31490314 | Msa0882370:intron | 35.0% | |
| ATCATGTGCAGTAACAACAT+TGG | - | chr6_1:31490538-31490557 | Msa0882370:intron | 35.0% | |
| TCATGTGCAGTAACAACATT+GGG | - | chr6_1:31490539-31490558 | Msa0882370:intron | 35.0% | |
| ATTTGACAGCTACGACAATT+GGG | - | chr6_1:31490576-31490595 | Msa0882370:intron | 35.0% | |
| CACAGTTCTGCATTTCAAAA+TGG | - | chr6_1:31490641-31490660 | Msa0882370:intron | 35.0% | |
| TTAATTTCAACCACTTACGC+AGG | - | chr6_1:31490681-31490700 | Msa0882370:intron | 35.0% | |
| ! | TCTGCTTTCGGGTATATATT+TGG | + | chr6_1:31490742-31490761 | None:intergenic | 35.0% |
| !!! | TTTACTTCCCTGTGTCATTT+TGG | - | chr6_1:31490949-31490968 | Msa0882370:intron | 35.0% |
| !!! | TTACTTCCCTGTGTCATTTT+GGG | - | chr6_1:31490950-31490969 | Msa0882370:intron | 35.0% |
| CAATGTAGAAGCAATGTAGT+CGG | - | chr6_1:31490979-31490998 | Msa0882370:intron | 35.0% | |
| AATGTAGAAGCAATGTAGTC+GGG | - | chr6_1:31490980-31490999 | Msa0882370:intron | 35.0% | |
| TAGTCGGGTATTTCATCTAT+TGG | - | chr6_1:31490995-31491014 | Msa0882370:intron | 35.0% | |
| AGATGGTGAATTATGCACAT+TGG | - | chr6_1:31491238-31491257 | Msa0882370:CDS | 35.0% | |
| ATAACGGCATACCAAAAAAG+AGG | + | chr6_1:31491407-31491426 | None:intergenic | 35.0% | |
| AAATATATTCCCCGATTCAC+AGG | - | chr6_1:31491594-31491613 | Msa0882370:intron | 35.0% | |
| ! | TAGGAATTTTTAACCCGTAC+TGG | + | chr6_1:31491664-31491683 | None:intergenic | 35.0% |
| ! | GTTTTCTGTTTACAATCTGC+AGG | - | chr6_1:31491803-31491822 | Msa0882370:intron | 35.0% |
| CATTCAACGACAACAATGAT+AGG | + | chr6_1:31491943-31491962 | None:intergenic | 35.0% | |
| ! | GATCTTTGATCTGTTTGTTG+AGG | - | chr6_1:31492136-31492155 | Msa0882370:intron | 35.0% |
| CTGGGAAACAAAAAACACTT+GGG | + | chr6_1:31492242-31492261 | None:intergenic | 35.0% | |
| AAGTTCCTGCTAAACAACAA+AGG | + | chr6_1:31492290-31492309 | None:intergenic | 35.0% | |
| !! | TCTCTAGTTCTTCAACAACA+TGG | + | chr6_1:31492315-31492334 | None:intergenic | 35.0% |
| ATTTCCAATGAGAGAGATGA+TGG | + | chr6_1:31492371-31492390 | None:intergenic | 35.0% | |
| ! | GGAATGTCATTTGTTTGACA+TGG | - | chr6_1:31492545-31492564 | Msa0882370:intron | 35.0% |
| ACTGTTCAAATGATCTCTCA+AGG | - | chr6_1:31492770-31492789 | Msa0882370:intron | 35.0% | |
| GAAGGAGTTGAAAATTTGCA+TGG | + | chr6_1:31493151-31493170 | None:intergenic | 35.0% | |
| ACATTCTCATTTATCAGACG+TGG | + | chr6_1:31493242-31493261 | None:intergenic | 35.0% | |
| GTTTATTAATCAGGCTCAAC+TGG | - | chr6_1:31493326-31493345 | Msa0882370:five_prime_UTR | 35.0% | |
| GTATGAGTAGGACTCATAAT+CGG | - | chr6_1:31493361-31493380 | Msa0882370:intron | 35.0% | |
| AAGGAGCTTCAGAAGAAAGA+AGG | + | chr6_1:31486600-31486619 | None:intergenic | 40.0% | |
| ! | AGAAGCACGTGATTGAGAAT+GGG | - | chr6_1:31486935-31486954 | Msa0882370:three_prime_UTR | 40.0% |
| ACATGTGTGATGAAGTTTGG+TGG | - | chr6_1:31487012-31487031 | Msa0882370:CDS | 40.0% | |
| ! | ATTGGTTATGAGTTTTCCGG+AGG | - | chr6_1:31487077-31487096 | Msa0882370:CDS | 40.0% |
| AGGCAACCAAAATTGCGATT+CGG | + | chr6_1:31487723-31487742 | None:intergenic | 40.0% | |
| CGCTACATCATCAAATCAGA+TGG | + | chr6_1:31487785-31487804 | None:intergenic | 40.0% | |
| GAATCAGGGAACCAAAATTG+TGG | - | chr6_1:31487999-31488018 | Msa0882370:CDS | 40.0% | |
| AGGGAACCAAAATTGTGGTT+TGG | - | chr6_1:31488004-31488023 | Msa0882370:CDS | 40.0% | |
| ! | TTGTGGTTTGGCCAAAATAG+GGG | - | chr6_1:31488016-31488035 | Msa0882370:CDS | 40.0% |
| !! | GCAGTTTTAGTCCCCTATTT+TGG | + | chr6_1:31488030-31488049 | None:intergenic | 40.0% |
| ! | CTTCATATTGAAGGCACATC+GGG | - | chr6_1:31488085-31488104 | Msa0882370:intron | 40.0% |
| TGTCTGATAGGTGTAAGCTT+TGG | - | chr6_1:31488108-31488127 | Msa0882370:intron | 40.0% | |
| TTACCTGCATTTCAGAACTG+TGG | - | chr6_1:31488964-31488983 | Msa0882370:intron | 40.0% | |
| TTCAGAACTGTGGATCAACT+TGG | - | chr6_1:31488974-31488993 | Msa0882370:intron | 40.0% | |
| GTCTTGCAATGGATGAGATA+TGG | - | chr6_1:31489253-31489272 | Msa0882370:CDS | 40.0% | |
| !! | AATCTCACAAACCGGTTTTG+AGG | - | chr6_1:31489310-31489329 | Msa0882370:CDS | 40.0% |
| !! | ATCTCACAAACCGGTTTTGA+GGG | - | chr6_1:31489311-31489330 | Msa0882370:CDS | 40.0% |
| !! | TGTCTAGTTCTAGATGTGAG+GGG | - | chr6_1:31489428-31489447 | Msa0882370:intron | 40.0% |
| GTGTATTGAGAGTCCTACAT+TGG | - | chr6_1:31489452-31489471 | Msa0882370:CDS | 40.0% | |
| GGTCATATCTCATCCAATGT+AGG | + | chr6_1:31489468-31489487 | None:intergenic | 40.0% | |
| ACCCAGAAATTTGTAAACCG+AGG | - | chr6_1:31489579-31489598 | Msa0882370:intron | 40.0% | |
| CTCCTCGGTTTACAAATTTC+TGG | + | chr6_1:31489584-31489603 | None:intergenic | 40.0% | |
| ATATGCCAAGCTTGTAACAC+TGG | - | chr6_1:31489655-31489674 | Msa0882370:CDS | 40.0% | |
| TAGAATGTAGCTGCAACTGT+AGG | + | chr6_1:31489698-31489717 | None:intergenic | 40.0% | |
| ! | CACTGGAGCAACTTTTGAAT+GGG | - | chr6_1:31489960-31489979 | Msa0882370:CDS | 40.0% |
| ATATGCTGCAAAGATCCTAG+TGG | + | chr6_1:31490053-31490072 | None:intergenic | 40.0% | |
| GAGTTGGACAACATGATTAG+CGG | + | chr6_1:31490178-31490197 | None:intergenic | 40.0% | |
| CTGATGACTTTAGTCAGAGT+TGG | + | chr6_1:31490194-31490213 | None:intergenic | 40.0% | |
| CAACTCTGACTAAAGTCATC+AGG | - | chr6_1:31490192-31490211 | Msa0882370:intron | 40.0% | |
| CCAGTAACAATTGCAATTGC+AGG | + | chr6_1:31490383-31490402 | None:intergenic | 40.0% | |
| CCTGCAATTGCAATTGTTAC+TGG | - | chr6_1:31490380-31490399 | Msa0882370:intron | 40.0% | |
| GATTTGACAGCTACGACAAT+TGG | - | chr6_1:31490575-31490594 | Msa0882370:intron | 40.0% | |
| !! | ACGACAATTGGGAAAGCATT+AGG | - | chr6_1:31490587-31490606 | Msa0882370:intron | 40.0% |
| !! | CGACAATTGGGAAAGCATTA+GGG | - | chr6_1:31490588-31490607 | Msa0882370:intron | 40.0% |
| ! | TGTGTTGATATGCACAAACC+TGG | + | chr6_1:31490625-31490644 | None:intergenic | 40.0% |
| TCAAATGTCAAAAAGGGGAC+AGG | + | chr6_1:31490766-31490785 | None:intergenic | 40.0% | |
| CCTCGTCAAATGTCAAAAAG+GGG | + | chr6_1:31490771-31490790 | None:intergenic | 40.0% | |
| GCCTCGTCAAATGTCAAAAA+GGG | + | chr6_1:31490772-31490791 | None:intergenic | 40.0% | |
| AGCCTCGTCAAATGTCAAAA+AGG | + | chr6_1:31490773-31490792 | None:intergenic | 40.0% | |
| TCAGGTATCATTACATTCCC+TGG | - | chr6_1:31490816-31490835 | Msa0882370:intron | 40.0% | |
| AGAGCTAGATAAGTGAACCA+GGG | + | chr6_1:31490836-31490855 | None:intergenic | 40.0% | |
| AAGAGCTAGATAAGTGAACC+AGG | + | chr6_1:31490837-31490856 | None:intergenic | 40.0% | |
| TCCTACAATGTTGATGTCAG+AGG | - | chr6_1:31490868-31490887 | Msa0882370:intron | 40.0% | |
| TCCTCTGACATCAACATTGT+AGG | + | chr6_1:31490872-31490891 | None:intergenic | 40.0% | |
| !!! | TACTTCCCTGTGTCATTTTG+GGG | - | chr6_1:31490951-31490970 | Msa0882370:intron | 40.0% |
| ACTATCCCCAAAATGACACA+GGG | + | chr6_1:31490959-31490978 | None:intergenic | 40.0% | |
| TCGGGTATTTCATCTATTGG+TGG | - | chr6_1:31490998-31491017 | Msa0882370:intron | 40.0% | |
| CGGGTATTTCATCTATTGGT+GGG | - | chr6_1:31490999-31491018 | Msa0882370:intron | 40.0% | |
| !!! | TTCAAGTACTTTTTCTGGCG+TGG | - | chr6_1:31491044-31491063 | Msa0882370:CDS | 40.0% |
| ! | ATTTTCAGTTGGGTCTCTTG+TGG | - | chr6_1:31491077-31491096 | Msa0882370:intron | 40.0% |
| ! | TTTTCAGTTGGGTCTCTTGT+GGG | - | chr6_1:31491078-31491097 | Msa0882370:intron | 40.0% |
| TCTGTCTTTAGATTTGTCGG+TGG | - | chr6_1:31491106-31491125 | Msa0882370:intron | 40.0% | |
| CAGATAACATCCCTTGTACT+GGG | + | chr6_1:31491551-31491570 | None:intergenic | 40.0% | |
| ACAGATAACATCCCTTGTAC+TGG | + | chr6_1:31491552-31491571 | None:intergenic | 40.0% | |
| GAGAAGGTGATATTCCAGTA+CGG | - | chr6_1:31491647-31491666 | Msa0882370:intron | 40.0% | |
| AGAAGGTGATATTCCAGTAC+GGG | - | chr6_1:31491648-31491667 | Msa0882370:intron | 40.0% | |
| CTTGCTCATATCTCTTTCCT+TGG | + | chr6_1:31491716-31491735 | None:intergenic | 40.0% | |
| CAAGGAAAGAGATATGAGCA+AGG | - | chr6_1:31491714-31491733 | Msa0882370:intron | 40.0% | |
| GAAACGTAATGTGACCATGT+TGG | - | chr6_1:31491848-31491867 | Msa0882370:intron | 40.0% | |
| AGTGCTCACTATATCCAACA+TGG | + | chr6_1:31491865-31491884 | None:intergenic | 40.0% | |
| ACAACAATGATAGGTCTGAC+AGG | + | chr6_1:31491934-31491953 | None:intergenic | 40.0% | |
| TAATACAGCAGGCAAGTGTA+AGG | - | chr6_1:31492105-31492124 | Msa0882370:intron | 40.0% | |
| TCTATGTAAGTTCATCAGGG+AGG | + | chr6_1:31492170-31492189 | None:intergenic | 40.0% | |
| GCTGGGAAACAAAAAACACT+TGG | + | chr6_1:31492243-31492262 | None:intergenic | 40.0% | |
| !!! | TGTTTTTTGTTTCCCAGCCA+TGG | - | chr6_1:31492245-31492264 | Msa0882370:intron | 40.0% |
| ATTAGAGTTATGCCATGGCT+GGG | + | chr6_1:31492260-31492279 | None:intergenic | 40.0% | |
| TATTAGAGTTATGCCATGGC+TGG | + | chr6_1:31492261-31492280 | None:intergenic | 40.0% | |
| GACGTATTAGAGTTATGCCA+TGG | + | chr6_1:31492265-31492284 | None:intergenic | 40.0% | |
| !! | GTCTTCCTTTGTTGTTTAGC+AGG | - | chr6_1:31492282-31492301 | Msa0882370:intron | 40.0% |
| AGAACTAGAGAAAATCGCTG+TGG | - | chr6_1:31492324-31492343 | Msa0882370:intron | 40.0% | |
| AGATCCATCATCTCTCTCAT+TGG | - | chr6_1:31492364-31492383 | Msa0882370:intron | 40.0% | |
| AAGGTAGAGATAAAAAGGCC+CGG | + | chr6_1:31492512-31492531 | None:intergenic | 40.0% | |
| ! | TCTCTACCTTTTTCTCCATG+TGG | - | chr6_1:31492522-31492541 | Msa0882370:intron | 40.0% |
| ! | CTCTACCTTTTTCTCCATGT+GGG | - | chr6_1:31492523-31492542 | Msa0882370:intron | 40.0% |
| ! | TCTACCTTTTTCTCCATGTG+GGG | - | chr6_1:31492524-31492543 | Msa0882370:intron | 40.0% |
| AACAAATGACATTCCCCACA+TGG | + | chr6_1:31492540-31492559 | None:intergenic | 40.0% | |
| TTTGTTTGACATGGATCCCT+TGG | - | chr6_1:31492554-31492573 | Msa0882370:intron | 40.0% | |
| TTGTTTGACATGGATCCCTT+GGG | - | chr6_1:31492555-31492574 | Msa0882370:intron | 40.0% | |
| CATTTGAACAGTGACACCAA+GGG | + | chr6_1:31492762-31492781 | None:intergenic | 40.0% | |
| TCATTTGAACAGTGACACCA+AGG | + | chr6_1:31492763-31492782 | None:intergenic | 40.0% | |
| !!! | TTCTCTGTTTTGTTTTCGCC+AGG | - | chr6_1:31492916-31492935 | Msa0882370:CDS | 40.0% |
| CTACCAATGAGATATTCACC+TGG | + | chr6_1:31492937-31492956 | None:intergenic | 40.0% | |
| ! | AGTAAATGATAGTGAGGCAG+AGG | - | chr6_1:31492955-31492974 | Msa0882370:CDS | 40.0% |
| ! | CAGTTTCAAAGAAAGCGTGA+TGG | + | chr6_1:31492997-31493016 | None:intergenic | 40.0% |
| ACATCTCAATCACACAAGGT+TGG | + | chr6_1:31493173-31493192 | None:intergenic | 40.0% | |
| TGCTACATCTCAATCACACA+AGG | + | chr6_1:31493177-31493196 | None:intergenic | 40.0% | |
| GTGTGATTGAGATGTAGCAA+TGG | - | chr6_1:31493178-31493197 | Msa0882370:CDS | 40.0% | |
| CAAGTGTATACAGAAGCTTC+AGG | - | chr6_1:31493208-31493227 | Msa0882370:CDS | 40.0% | |
| TCTCATTTATCAGACGTGGA+GGG | + | chr6_1:31493238-31493257 | None:intergenic | 40.0% | |
| TTCTCATTTATCAGACGTGG+AGG | + | chr6_1:31493239-31493258 | None:intergenic | 40.0% | |
| ATAGGTCTAATGCAAGTGAC+GGG | + | chr6_1:31493435-31493454 | None:intergenic | 40.0% | |
| GATAGGTCTAATGCAAGTGA+CGG | + | chr6_1:31493436-31493455 | None:intergenic | 40.0% | |
| !! | TTCTGAAGCTCCTTCTTCTC+AGG | - | chr6_1:31486606-31486625 | Msa0882370:three_prime_UTR | 45.0% |
| CGAATTTCCGAAAAAAGCGG+CGG | - | chr6_1:31486888-31486907 | Msa0882370:three_prime_UTR | 45.0% | |
| ! | GAGAAGCACGTGATTGAGAA+TGG | - | chr6_1:31486934-31486953 | Msa0882370:three_prime_UTR | 45.0% |
| !! | GATGATGGAAGTTGCTGGAT+TGG | - | chr6_1:31487059-31487078 | Msa0882370:CDS | 45.0% |
| ! | TTATGAGTTTTCCGGAGGAG+AGG | - | chr6_1:31487082-31487101 | Msa0882370:CDS | 45.0% |
| GTGAGAGTCTTCAAAATGCG+AGG | + | chr6_1:31487877-31487896 | None:intergenic | 45.0% | |
| !! | CATGTTTGGGTGGTGTTGAT+TGG | - | chr6_1:31488432-31488451 | Msa0882370:intron | 45.0% |
| GGAGAAAAAGCTGTGAGTTG+CGG | - | chr6_1:31488785-31488804 | Msa0882370:intron | 45.0% | |
| !! | TGCGGTGTTACTAATGTCTC+TGG | - | chr6_1:31488803-31488822 | Msa0882370:intron | 45.0% |
| !! | GATCCACAGTTCTGAAATGC+AGG | + | chr6_1:31488970-31488989 | None:intergenic | 45.0% |
| AACTGTGGATCAACTTGGAG+TGG | - | chr6_1:31488979-31488998 | Msa0882370:intron | 45.0% | |
| CTCGATAACAGATGGCACAA+CGG | + | chr6_1:31489388-31489407 | None:intergenic | 45.0% | |
| CCTAGTGACTCGATAACAGA+TGG | + | chr6_1:31489396-31489415 | None:intergenic | 45.0% | |
| CCATCTGTTATCGAGTCACT+AGG | - | chr6_1:31489393-31489412 | Msa0882370:intron | 45.0% | |
| TGTAAACCGAGGAGTTTGTC+TGG | - | chr6_1:31489590-31489609 | Msa0882370:intron | 45.0% | |
| GATAGACCAGACAAACTCCT+CGG | + | chr6_1:31489599-31489618 | None:intergenic | 45.0% | |
| GAGGAGTTTGTCTGGTCTAT+CGG | - | chr6_1:31489598-31489617 | Msa0882370:intron | 45.0% | |
| GTCTATCGGATATGATTGCG+TGG | - | chr6_1:31489612-31489631 | Msa0882370:intron | 45.0% | |
| TGTGACCAGTGTTACAAGCT+TGG | + | chr6_1:31489663-31489682 | None:intergenic | 45.0% | |
| TGCAAGGGTGAAATCCATCA+TGG | + | chr6_1:31489734-31489753 | None:intergenic | 45.0% | |
| ! | GCACTGGAGCAACTTTTGAA+TGG | - | chr6_1:31489959-31489978 | Msa0882370:CDS | 45.0% |
| AACAAGAACACGTACTTGGC+GGG | + | chr6_1:31490098-31490117 | None:intergenic | 45.0% | |
| CAACAAGAACACGTACTTGG+CGG | + | chr6_1:31490099-31490118 | None:intergenic | 45.0% | |
| ! | CAGTACGACGCATTTGAGAT+TGG | - | chr6_1:31490263-31490282 | Msa0882370:intron | 45.0% |
| TGCAATCTCTTTGCAACAGC+CGG | + | chr6_1:31490341-31490360 | None:intergenic | 45.0% | |
| GCTGTTGCAAAGAGATTGCA+TGG | - | chr6_1:31490341-31490360 | Msa0882370:intron | 45.0% | |
| CAAAGAGATTGCATGGCGAT+TGG | - | chr6_1:31490348-31490367 | Msa0882370:intron | 45.0% | |
| !! | GCAATTGTTACTGGCTTCCT+TGG | - | chr6_1:31490389-31490408 | Msa0882370:intron | 45.0% |
| !! | TGTTACTGGCTTCCTTGGAA+AGG | - | chr6_1:31490394-31490413 | Msa0882370:intron | 45.0% |
| GCAGTAACAACATTGGGTAG+AGG | - | chr6_1:31490545-31490564 | Msa0882370:intron | 45.0% | |
| GTAACAACATTGGGTAGAGG+TGG | - | chr6_1:31490548-31490567 | Msa0882370:intron | 45.0% | |
| ATTAGGGTTACCTGAGATCC+AGG | - | chr6_1:31490604-31490623 | Msa0882370:intron | 45.0% | |
| TATGCACAAACCTGGATCTC+AGG | + | chr6_1:31490617-31490636 | None:intergenic | 45.0% | |
| TTCAACCACTTACGCAGGTA+TGG | - | chr6_1:31490686-31490705 | Msa0882370:intron | 45.0% | |
| CAGGTATGGAAGGATGTTGA+TGG | - | chr6_1:31490700-31490719 | Msa0882370:intron | 45.0% | |
| ! | CCCCTTTTTGACATTTGACG+AGG | - | chr6_1:31490768-31490787 | Msa0882370:intron | 45.0% |
| ! | GTTGGAGTTGGTTATCTGCA+CGG | - | chr6_1:31490916-31490935 | Msa0882370:intron | 45.0% |
| TGGTTATCTGCACGGTTGAA+TGG | - | chr6_1:31490924-31490943 | Msa0882370:intron | 45.0% | |
| GACTATCCCCAAAATGACAC+AGG | + | chr6_1:31490960-31490979 | None:intergenic | 45.0% | |
| !!! | GGTCTAATTTTTGGCACCTC+TGG | - | chr6_1:31491167-31491186 | Msa0882370:intron | 45.0% |
| !!! | TGCTAGCTGCACCTCTTTTT+TGG | - | chr6_1:31491393-31491412 | Msa0882370:intron | 45.0% |
| AAGTGAGTGAACCCAGTACA+AGG | - | chr6_1:31491537-31491556 | Msa0882370:intron | 45.0% | |
| AGTGAGTGAACCCAGTACAA+GGG | - | chr6_1:31491538-31491557 | Msa0882370:intron | 45.0% | |
| TCTATGAGACCTGCTAGAGA+AGG | - | chr6_1:31491631-31491650 | Msa0882370:intron | 45.0% | |
| GGAATATCACCTTCTCTAGC+AGG | + | chr6_1:31491643-31491662 | None:intergenic | 45.0% | |
| GTGTTAAGCAAGACTTGGAC+AGG | - | chr6_1:31491774-31491793 | Msa0882370:intron | 45.0% | |
| TCAGTACGGTTTCCTTGCTA+AGG | - | chr6_1:31491896-31491915 | Msa0882370:intron | 45.0% | |
| CATCAACTCTCACCTTAGCA+AGG | + | chr6_1:31491911-31491930 | None:intergenic | 45.0% | |
| TGTTGTCGTTGAATGCGTTC+CGG | - | chr6_1:31491948-31491967 | Msa0882370:intron | 45.0% | |
| AGTCAGTGTTTCCTTGACGT+TGG | - | chr6_1:31492055-31492074 | Msa0882370:intron | 45.0% | |
| ! | CTTTGATGGATCCAACGTCA+AGG | + | chr6_1:31492069-31492088 | None:intergenic | 45.0% |
| GAGCAGAGAACTAATACAGC+AGG | - | chr6_1:31492094-31492113 | Msa0882370:intron | 45.0% | |
| AGACAAATGCCTGCTCGATT+AGG | - | chr6_1:31492187-31492206 | Msa0882370:intron | 45.0% | |
| CAAGTAACACCTAATCGAGC+AGG | + | chr6_1:31492199-31492218 | None:intergenic | 45.0% | |
| CATTCCCCACATGGAGAAAA+AGG | + | chr6_1:31492531-31492550 | None:intergenic | 45.0% | |
| TGTTTGACATGGATCCCTTG+GGG | - | chr6_1:31492556-31492575 | Msa0882370:intron | 45.0% | |
| GATCTCTCAAGGTGCATCTA+AGG | - | chr6_1:31492781-31492800 | Msa0882370:intron | 45.0% | |
| TCGCCAGGTGAATATCTCAT+TGG | - | chr6_1:31492931-31492950 | Msa0882370:CDS | 45.0% | |
| TGAGGCAGAGGAATGTGTAA+GGG | - | chr6_1:31492967-31492986 | Msa0882370:CDS | 45.0% | |
| CTCAATCACACAAGGTTGGA+AGG | + | chr6_1:31493169-31493188 | None:intergenic | 45.0% | |
| TGAGAAGAAGGAAGGAGACG+CGG | + | chr6_1:31486517-31486536 | None:intergenic | 50.0% | |
| ! | TCTATGCTGATGATGCCACG+TGG | + | chr6_1:31486845-31486864 | None:intergenic | 50.0% |
| !!! | ACCTTCACCGCCGCTTTTTT+CGG | + | chr6_1:31486898-31486917 | None:intergenic | 50.0% |
| GAAGGTCACGTGCAATGTGT+TGG | - | chr6_1:31486912-31486931 | Msa0882370:three_prime_UTR | 50.0% | |
| AGCACGTGATTGAGAATGGG+AGG | - | chr6_1:31486938-31486957 | Msa0882370:three_prime_UTR | 50.0% | |
| GATTGAGAATGGGAGGAGTG+TGG | - | chr6_1:31486945-31486964 | Msa0882370:three_prime_UTR | 50.0% | |
| AGTGTGGTTGAGGAGGAAGA+AGG | - | chr6_1:31486961-31486980 | Msa0882370:exon | 50.0% | |
| AGGAAGAAGGAGGTGAAGGA+GGG | - | chr6_1:31486974-31486993 | Msa0882370:exon | 50.0% | |
| !! | GAGAGGATGATGGAAGTTGC+TGG | - | chr6_1:31487054-31487073 | Msa0882370:CDS | 50.0% |
| ACTGCTCTTACCTGAGATGC+AGG | + | chr6_1:31488856-31488875 | None:intergenic | 50.0% | |
| ! | TTGGAGAGTGCATGTCCACT+AGG | - | chr6_1:31490035-31490054 | Msa0882370:CDS | 50.0% |
| ACCACTTACGCAGGTATGGA+AGG | - | chr6_1:31490690-31490709 | Msa0882370:intron | 50.0% | |
| TCCTTCCATACCTGCGTAAG+TGG | + | chr6_1:31490694-31490713 | None:intergenic | 50.0% | |
| AAGGGGACAGGTTCTGCTTT+CGG | + | chr6_1:31490754-31490773 | None:intergenic | 50.0% | |
| ! | GCTGCTGAGCTAGCTTACTT+TGG | - | chr6_1:31490790-31490809 | Msa0882370:intron | 50.0% |
| !! | GCTAGCTTACTTTGGTGCTC+AGG | - | chr6_1:31490798-31490817 | Msa0882370:intron | 50.0% |
| TAGATTTGTCGGTGGTGCTC+AGG | - | chr6_1:31491114-31491133 | Msa0882370:intron | 50.0% | |
| GATGCAGAACCTGTGAATCG+GGG | + | chr6_1:31491606-31491625 | None:intergenic | 50.0% | |
| GGATGCAGAACCTGTGAATC+GGG | + | chr6_1:31491607-31491626 | None:intergenic | 50.0% | |
| CGGATGCAGAACCTGTGAAT+CGG | + | chr6_1:31491608-31491627 | None:intergenic | 50.0% | |
| CTAGCAGGTCTCATAGACTG+CGG | + | chr6_1:31491628-31491647 | None:intergenic | 50.0% | |
| TTCCTACAACCCGAAAGCTC+CGG | - | chr6_1:31491678-31491697 | Msa0882370:intron | 50.0% | |
| ATAGTGAGCACTCGCATGCT+TGG | - | chr6_1:31491873-31491892 | Msa0882370:intron | 50.0% | |
| ACTCGCATGCTTGGTCAGTA+CGG | - | chr6_1:31491882-31491901 | Msa0882370:intron | 50.0% | |
| CGTTGGATCCATCAAAGCTC+TGG | - | chr6_1:31492072-31492091 | Msa0882370:intron | 50.0% | |
| ! | TCTCTGCTCCAGAGCTTTGA+TGG | + | chr6_1:31492083-31492102 | None:intergenic | 50.0% |
| CAAGATCAACAGTGCCCCAA+GGG | + | chr6_1:31492573-31492592 | None:intergenic | 50.0% | |
| TTTCGCGTTCTTCGAACCCT+TGG | - | chr6_1:31492743-31492762 | Msa0882370:intron | 50.0% | |
| GTGAGGCAGAGGAATGTGTA+AGG | - | chr6_1:31492966-31492985 | Msa0882370:CDS | 50.0% | |
| ! | TGGCAAGTGGTGGAAGAAGG+AGG | + | chr6_1:31486825-31486844 | None:intergenic | 55.0% |
| ! | ACGTGGCAAGTGGTGGAAGA+AGG | + | chr6_1:31486828-31486847 | None:intergenic | 55.0% |
| TTCTTCCACCACTTGCCACG+TGG | - | chr6_1:31486827-31486846 | Msa0882370:three_prime_UTR | 55.0% | |
| ! | TGATGATGCCACGTGGCAAG+TGG | + | chr6_1:31486838-31486857 | None:intergenic | 55.0% |
| TCCGAAAAAAGCGGCGGTGA+AGG | - | chr6_1:31486894-31486913 | Msa0882370:three_prime_UTR | 55.0% | |
| ! | GAATGGGAGGAGTGTGGTTG+AGG | - | chr6_1:31486951-31486970 | Msa0882370:three_prime_UTR | 55.0% |
| GTGGTTGAGGAGGAAGAAGG+AGG | - | chr6_1:31486964-31486983 | Msa0882370:exon | 55.0% | |
| GAGGAGGAAGAAGGAGGTGA+AGG | - | chr6_1:31486970-31486989 | Msa0882370:exon | 55.0% | |
| GAGGAAGAAGGAGGTGAAGG+AGG | - | chr6_1:31486973-31486992 | Msa0882370:exon | 55.0% | |
| TGGTGGTTCGTCAGTTGCGT+CGG | - | chr6_1:31487029-31487048 | Msa0882370:CDS | 55.0% | |
| ACAACAATCGGCCTCTCCTC+CGG | + | chr6_1:31487096-31487115 | None:intergenic | 55.0% | |
| AGGCACATCGGGTGTCTGAT+AGG | - | chr6_1:31488096-31488115 | Msa0882370:intron | 55.0% | |
| ! | TCCAGAGCATCTGGAAGCAC+TGG | - | chr6_1:31489943-31489962 | Msa0882370:intron | 55.0% |
| TCCAGTGCTTCCAGATGCTC+TGG | + | chr6_1:31489947-31489966 | None:intergenic | 55.0% | |
| AGGGGACAGGTTCTGCTTTC+GGG | + | chr6_1:31490753-31490772 | None:intergenic | 55.0% | |
| TCCTACAACCCGAAAGCTCC+GGG | - | chr6_1:31491679-31491698 | Msa0882370:intron | 55.0% | |
| !! | ATGAGAGTGCCCGGAGCTTT+CGG | + | chr6_1:31491691-31491710 | None:intergenic | 55.0% |
| !! | TCCTTGGTGATGAGAGTGCC+CGG | + | chr6_1:31491700-31491719 | None:intergenic | 55.0% |
| CCAAGATCAACAGTGCCCCA+AGG | + | chr6_1:31492574-31492593 | None:intergenic | 55.0% | |
| !! | CCTTGGGGCACTGTTGATCT+TGG | - | chr6_1:31492571-31492590 | Msa0882370:intron | 55.0% |
| GAAGAAGGAAGGAGACGCGG+CGG | + | chr6_1:31486514-31486533 | None:intergenic | 60.0% | |
| TGATGCCACGTGGCAAGTGG+TGG | + | chr6_1:31486835-31486854 | None:intergenic | 60.0% | |
| ! | TGGGAGGAGTGTGGTTGAGG+AGG | - | chr6_1:31486954-31486973 | Msa0882370:three_prime_UTR | 60.0% |
| TGGTTCGTCAGTTGCGTCGG+CGG | - | chr6_1:31487032-31487051 | Msa0882370:CDS | 60.0% | |
| !! | TGAGAGTGCCCGGAGCTTTC+GGG | + | chr6_1:31491690-31491709 | None:intergenic | 60.0% |
| TCCGGGCACTCTCATCACCA+AGG | - | chr6_1:31491696-31491715 | Msa0882370:intron | 60.0% | |
| ! | TGCGTCGGCGGAGAGGATGA+TGG | - | chr6_1:31487044-31487063 | Msa0882370:CDS | 65.0% |
| !! | GCCCGGAGCTTTCGGGTTGT+AGG | + | chr6_1:31491683-31491702 | None:intergenic | 65.0% |
| GAAGGAAGGAGACGCGGCGG+CGG | + | chr6_1:31486511-31486530 | None:intergenic | 70.0% | |
| ! | CGTCAGTTGCGTCGGCGGAG+AGG | - | chr6_1:31487037-31487056 | Msa0882370:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 31486465 | 31493593 | 31486465 | ID=Msa0882370;Name=Msa0882370 |
| chr6_1 | mRNA | 31486465 | 31493593 | 31486465 | ID=Msa0882370-mRNA-1;Parent=Msa0882370;Name=Msa0882370-mRNA-1;_AED=0.15;_eAED=0.15;_QI=181|0.86|0.93|0.93|0.86|0.81|16|515|578 |
| chr6_1 | exon | 31486465 | 31487120 | 31486465 | ID=Msa0882370-mRNA-1:exon:7824;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31487256 | 31487318 | 31487256 | ID=Msa0882370-mRNA-1:exon:7823;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31487638 | 31487754 | 31487638 | ID=Msa0882370-mRNA-1:exon:7822;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31487937 | 31488059 | 31487937 | ID=Msa0882370-mRNA-1:exon:7821;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31488141 | 31488233 | 31488141 | ID=Msa0882370-mRNA-1:exon:7820;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31488323 | 31488442 | 31488323 | ID=Msa0882370-mRNA-1:exon:7819;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31488923 | 31488973 | 31488923 | ID=Msa0882370-mRNA-1:exon:7818;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31489239 | 31489355 | 31489239 | ID=Msa0882370-mRNA-1:exon:7817;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31489433 | 31489528 | 31489433 | ID=Msa0882370-mRNA-1:exon:7816;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31489643 | 31489792 | 31489643 | ID=Msa0882370-mRNA-1:exon:7815;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31489956 | 31490110 | 31489956 | ID=Msa0882370-mRNA-1:exon:7814;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31491039 | 31491079 | 31491039 | ID=Msa0882370-mRNA-1:exon:7813;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31491194 | 31491276 | 31491194 | ID=Msa0882370-mRNA-1:exon:7812;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31492903 | 31493350 | 31492903 | ID=Msa0882370-mRNA-1:exon:7811;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31493431 | 31493520 | 31493431 | ID=Msa0882370-mRNA-1:exon:7810;Parent=Msa0882370-mRNA-1 |
| chr6_1 | exon | 31493564 | 31493593 | 31493564 | ID=Msa0882370-mRNA-1:exon:7809;Parent=Msa0882370-mRNA-1 |
| chr6_1 | five_prime_UTR | 31493564 | 31493593 | 31493564 | ID=Msa0882370-mRNA-1:five_prime_utr;Parent=Msa0882370-mRNA-1 |
| chr6_1 | five_prime_UTR | 31493431 | 31493520 | 31493431 | ID=Msa0882370-mRNA-1:five_prime_utr;Parent=Msa0882370-mRNA-1 |
| chr6_1 | five_prime_UTR | 31493290 | 31493350 | 31493290 | ID=Msa0882370-mRNA-1:five_prime_utr;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31492903 | 31493289 | 31492903 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31491194 | 31491276 | 31491194 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31491039 | 31491079 | 31491039 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31489956 | 31490110 | 31489956 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31489643 | 31489792 | 31489643 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31489433 | 31489528 | 31489433 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31489239 | 31489355 | 31489239 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31488923 | 31488973 | 31488923 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31488323 | 31488442 | 31488323 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31488141 | 31488233 | 31488141 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31487937 | 31488059 | 31487937 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31487638 | 31487754 | 31487638 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31487256 | 31487318 | 31487256 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | CDS | 31486980 | 31487120 | 31486980 | ID=Msa0882370-mRNA-1:cds;Parent=Msa0882370-mRNA-1 |
| chr6_1 | three_prime_UTR | 31486465 | 31486979 | 31486465 | ID=Msa0882370-mRNA-1:three_prime_utr;Parent=Msa0882370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
