AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050650 MtrunA17_Chr1g0155781 98.077 364 7 0 1 364 1 364 0.0 751
Msa0050650 MtrunA17_Chr4g0035551 71.196 368 94 6 1 364 1 360 0.0 539
Msa0050650 MtrunA17_Chr1g0199131 53.571 364 155 4 7 364 15 370 5.66e-145 415
Msa0050650 MtrunA17_Chr4g0036731 59.218 358 99 8 8 364 13 324 2.19e-142 407
Msa0050650 MtrunA17_Chr4g0037291 57.143 357 112 7 8 364 54 369 3.18e-138 398
Msa0050650 MtrunA17_Chr4g0036281 56.098 369 116 9 1 364 1 328 4.20e-138 396
Msa0050650 MtrunA17_Chr1g0208261 42.006 319 157 9 38 345 74 375 5.69e-69 225
Msa0050650 MtrunA17_Chr4g0070441 38.567 363 189 11 9 359 7 347 1.66e-66 214
Msa0050650 MtrunA17_Chr0c27g0493921 39.045 356 183 11 9 352 7 340 7.68e-66 212
Msa0050650 MtrunA17_Chr4g0040851 37.864 309 167 8 51 352 61 351 8.73e-66 212
Msa0050650 MtrunA17_Chr4g0041061 37.097 372 172 14 1 352 7 336 1.61e-65 211
Msa0050650 MtrunA17_Chr4g0040881 37.640 356 163 13 14 352 23 336 7.87e-65 209
Msa0050650 MtrunA17_Chr5g0405751 38.053 339 165 11 33 352 23 335 1.28e-64 209
Msa0050650 MtrunA17_Chr4g0053311 40.134 299 151 8 57 345 41 321 1.44e-64 209
Msa0050650 MtrunA17_Chr3g0144281 39.048 315 167 8 51 357 47 344 1.55e-64 209
Msa0050650 MtrunA17_Chr4g0060251 40.000 315 148 11 56 352 45 336 2.59e-64 208
Msa0050650 MtrunA17_Chr3g0134231 37.037 351 189 10 5 345 13 341 4.00e-64 211
Msa0050650 MtrunA17_Chr4g0024411 39.048 315 151 11 56 352 43 334 6.02e-64 207
Msa0050650 MtrunA17_Chr3g0116551 40.268 298 150 9 67 352 55 336 2.63e-63 206
Msa0050650 MtrunA17_Chr4g0041081 38.024 334 165 12 41 357 33 341 1.16e-62 204
Msa0050650 MtrunA17_Chr4g0041521 39.474 304 160 8 56 352 45 331 1.16e-62 203
Msa0050650 MtrunA17_Chr4g0041481 37.931 319 166 9 45 352 34 331 5.49e-62 202
Msa0050650 MtrunA17_Chr2g0325121 37.248 298 165 7 51 345 39 317 4.14e-60 197
Msa0050650 MtrunA17_Chr4g0058081 39.000 300 152 11 66 352 54 335 1.24e-59 196
Msa0050650 MtrunA17_Chr3g0142071 37.383 321 169 10 51 357 50 352 3.24e-59 198
Msa0050650 MtrunA17_Chr2g0283901 37.072 321 169 11 51 357 51 352 6.56e-59 198
Msa0050650 MtrunA17_Chr2g0315491 39.739 307 149 10 60 352 48 332 9.54e-59 193
Msa0050650 MtrunA17_Chr8g0379151 36.137 321 171 12 51 356 67 368 5.24e-58 192
Msa0050650 MtrunA17_Chr4g0041471 35.831 307 172 8 56 352 42 333 4.02e-57 189
Msa0050650 MtrunA17_Chr1g0153011 36.571 350 165 12 5 345 21 322 4.42e-56 189
Msa0050650 MtrunA17_Chr2g0319991 36.747 332 171 14 44 358 31 340 1.19e-54 183
Msa0050650 MtrunA17_Chr2g0283671 45.455 220 100 8 128 345 7 208 5.79e-52 172
Msa0050650 MtrunA17_Chr2g0283741 32.919 322 176 11 51 354 53 352 2.38e-49 170
Msa0050650 MtrunA17_Chr7g0248811 32.492 317 189 8 42 352 30 327 3.32e-47 163
Msa0050650 MtrunA17_Chr8g0379671 56.296 135 45 2 176 310 23 143 1.08e-46 156
Msa0050650 MtrunA17_Chr2g0311381 31.510 384 201 17 1 359 1 347 2.30e-45 159
Msa0050650 MtrunA17_Chr7g0248391 31.481 324 194 9 36 352 27 329 5.10e-45 157
Msa0050650 MtrunA17_Chr2g0311471 31.746 378 201 13 1 357 1 342 7.00e-44 155
Msa0050650 MtrunA17_Chr1g0156161 37.838 222 118 6 133 351 47 251 6.85e-36 131
Msa0050650 MtrunA17_Chr2g0311391 28.378 370 188 14 39 357 24 367 9.27e-35 131
Msa0050650 MtrunA17_Chr2g0283751 34.199 231 123 7 62 279 64 278 1.94e-33 125
Msa0050650 MtrunA17_Chr7g0271031 26.632 383 226 14 7 357 20 379 3.06e-28 114
Msa0050650 MtrunA17_Chr7g0271041 27.157 313 183 11 75 357 38 335 2.39e-25 105
Msa0050650 MtrunA17_Chr1g0156771 46.018 113 49 3 133 242 53 156 2.22e-22 92.4
Msa0050650 MtrunA17_Chr2g0311091 36.806 144 75 4 58 185 41 184 1.75e-19 85.1
Msa0050650 MtrunA17_Chr7g0248421 34.416 154 89 4 159 311 57 199 3.29e-19 85.1
Msa0050650 MtrunA17_Chr2g0283661 30.000 170 95 4 5 170 7 156 1.09e-17 82.0
Msa0050650 MtrunA17_Chr2g0283661 34.513 113 58 5 253 361 168 268 1.75e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050650 AT4G39090.1 73.977 342 87 2 24 364 24 364 0.0 547
Msa0050650 AT2G21430.1 70.308 357 96 3 9 364 14 361 0.0 540
Msa0050650 AT4G16190.1 69.505 364 106 5 5 364 8 370 2.79e-178 499
Msa0050650 AT3G54940.2 56.232 345 140 3 29 364 24 366 5.74e-150 427
Msa0050650 AT3G54940.3 53.725 255 107 3 29 274 24 276 3.98e-99 295
Msa0050650 AT1G06260.1 41.745 321 155 12 48 357 40 339 1.98e-71 226
Msa0050650 AT5G60360.1 40.909 330 168 8 37 357 42 353 1.37e-70 225
Msa0050650 AT5G60360.3 41.358 324 163 8 37 351 42 347 1.18e-69 223
Msa0050650 AT3G45310.1 38.936 357 188 10 7 352 11 348 2.10e-69 222
Msa0050650 AT3G19390.1 42.581 310 147 11 60 357 52 342 2.37e-69 224
Msa0050650 AT5G60360.2 41.176 323 163 8 37 350 42 346 3.28e-69 221
Msa0050650 AT3G45310.2 38.592 355 188 10 7 350 11 346 5.30e-68 218
Msa0050650 AT4G36880.1 41.980 293 136 9 67 345 69 341 1.32e-67 218
Msa0050650 AT1G47128.1 41.924 291 132 8 67 345 68 333 2.82e-67 219
Msa0050650 AT4G35350.1 38.643 339 169 10 36 357 33 349 3.17e-67 216
Msa0050650 AT3G19400.1 40.777 309 156 10 60 357 53 345 7.35e-67 215
Msa0050650 AT5G43060.1 41.837 294 150 7 55 345 59 334 4.14e-66 216
Msa0050650 AT1G20850.1 40.566 318 160 9 51 357 51 350 2.19e-65 211
Msa0050650 AT3G43960.1 42.662 293 146 9 60 345 50 327 8.35e-65 210
Msa0050650 AT5G50260.1 41.806 299 146 9 66 352 52 334 1.24e-63 207
Msa0050650 AT1G09850.1 39.117 317 165 9 51 357 32 330 3.08e-63 208
Msa0050650 AT3G48340.1 38.318 321 162 9 41 345 24 324 7.02e-63 205
Msa0050650 AT4G23520.1 38.199 322 170 10 47 357 43 346 5.04e-62 202
Msa0050650 AT5G45890.1 35.890 365 182 14 7 352 6 337 1.13e-60 199
Msa0050650 AT1G29090.1 37.812 320 168 11 47 352 44 346 2.17e-59 196
Msa0050650 AT2G34080.1 36.102 313 168 10 54 352 42 336 7.18e-55 184
Msa0050650 AT3G48350.1 38.676 287 147 10 71 346 57 325 9.88e-54 181
Msa0050650 AT4G35350.2 39.526 253 135 5 36 280 33 275 1.56e-53 179
Msa0050650 AT2G27420.1 34.043 329 156 12 56 352 40 339 1.34e-50 172
Msa0050650 AT3G19400.2 40.708 226 122 5 60 280 53 271 2.20e-50 170
Msa0050650 AT4G11310.1 31.148 366 209 10 2 352 7 344 4.58e-50 172
Msa0050650 AT3G49340.1 32.381 315 183 9 54 355 38 335 1.28e-48 167
Msa0050650 AT1G29080.1 35.604 323 169 12 57 361 45 346 1.34e-48 167
Msa0050650 AT4G11320.2 31.351 370 203 12 5 352 11 351 2.17e-48 167
Msa0050650 AT4G11320.1 31.351 370 203 12 5 352 11 351 2.17e-48 167
Msa0050650 AT3G48350.2 38.356 219 116 6 71 280 57 265 1.82e-39 142
Msa0050650 AT1G29110.1 31.014 345 184 15 28 352 15 325 1.37e-36 135
Msa0050650 AT4G01610.1 29.688 320 173 15 64 353 34 331 3.55e-24 102
Msa0050650 AT4G01610.2 29.063 320 175 15 64 353 34 331 3.77e-22 96.7
Msa0050650 AT1G02305.1 30.208 288 153 12 98 356 69 337 6.61e-22 95.9
Msa0050650 AT1G02300.1 26.710 307 159 13 98 356 66 354 4.73e-17 82.0

Find 94 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTCCGTCGTCAGTTTCT+TGG 0.223807 1_2:-4588971 Msa0050650:CDS
TTTGGAAGGAGCAAATTATT+TGG 0.286718 1_2:-4588661 Msa0050650:CDS
GATTGAAGGAAAAGCCTTAC+TGG 0.291151 1_2:-4587020 Msa0050650:CDS
ATCCTTCCTCACCCCAATTC+TGG 0.294023 1_2:+4586977 None:intergenic
AGAATTCATGGGGCCAGAAT+TGG 0.303276 1_2:-4586990 Msa0050650:CDS
GAAGAACATGATTACCGATT+TGG 0.310705 1_2:-4589091 Msa0050650:CDS
GTAAAGAATGGCCCTCTTGC+AGG 0.324125 1_2:-4587321 Msa0050650:intron
GAACAAACGTCTCCGTTTAC+CGG 0.333947 1_2:-4588945 Msa0050650:CDS
TTACTAGATTTGCAGCAATT+TGG 0.338194 1_2:+4587340 None:intergenic
GATCATGGGGTTCTTCTAGT+TGG 0.348875 1_2:-4587072 Msa0050650:CDS
GGGGTTCTTCTAGTTGGTTT+TGG 0.352074 1_2:-4587066 Msa0050650:CDS
GAATTCATGGGGCCAGAATT+GGG 0.378415 1_2:-4586989 Msa0050650:CDS
GCGCAGAAGGATCAAGCTTC+TGG 0.386901 1_2:+4589032 None:intergenic
GAACTCAGACGCCGTTAAAT+CGG 0.390963 1_2:+4588988 None:intergenic
CATCTGTGCCAAAGCACGTT+TGG 0.391375 1_2:-4587094 Msa0050650:CDS
ACTGGATCATAAAGAATTCA+TGG 0.401274 1_2:-4587002 Msa0050650:CDS
TTCGAATACATACTCCAGTC+TGG 0.403345 1_2:-4587480 Msa0050650:CDS
CGTGCTTTGGCACAGATGTA+TGG 0.406234 1_2:+4587099 None:intergenic
CCCATGATCCAAACGTGCTT+TGG 0.406480 1_2:+4587086 None:intergenic
GGGTTCATGCGGTTCGTGTT+GGG 0.409026 1_2:-4588703 Msa0050650:CDS
CTTGCAGGATCCATCTCTTC+CGG 0.413354 1_2:+4587425 None:intergenic
AGGGTTCATGCGGTTCGTGT+TGG 0.415010 1_2:-4588704 Msa0050650:CDS
TCGCGCCAATCAAAATCCTC+TGG 0.420389 1_2:+4588881 None:intergenic
CCAAAGCACGTTTGGATCAT+GGG 0.425598 1_2:-4587086 Msa0050650:CDS
CTATGCTCCCATTCGATTGA+AGG 0.426934 1_2:-4587034 Msa0050650:CDS
AATCCACTCCACATACATTT+CGG 0.439462 1_2:+4586935 None:intergenic
CGTCACTCCCGTCAAGGATC+AGG 0.443966 1_2:-4588849 Msa0050650:intron
GCCAAAGCACGTTTGGATCA+TGG 0.451166 1_2:-4587087 Msa0050650:CDS
GAATTCTTTATGATCCAGTA+AGG 0.473251 1_2:+4587006 None:intergenic
TCTGAGCGTGAGCCGGTAAA+CGG 0.474751 1_2:+4588933 None:intergenic
GGAGCAAATTATTTGGCGAC+TGG 0.478944 1_2:-4588654 Msa0050650:CDS
TTGATTTGAACACGCCAAAT+CGG 0.479498 1_2:+4589077 None:intergenic
AACAATTAGCTACCTGCAAG+AGG 0.483963 1_2:+4587309 None:intergenic
GTGATTCCGTGTTGCGCAGA+AGG 0.484794 1_2:+4589019 None:intergenic
CAGCGGTGTCGACGACTTGT+CGG 0.487131 1_2:+4589188 None:intergenic
TCACAAGAATTACGTTCCTC+TGG 0.490836 1_2:+4587537 None:intergenic
CGCGCCAATCAAAATCCTCT+GGG 0.504763 1_2:+4588882 None:intergenic
CTGGATCATAAAGAATTCAT+GGG 0.512632 1_2:-4587001 Msa0050650:CDS
ATCGTCGGAGTTGGTGTCAT+CGG 0.513790 1_2:+4589219 None:intergenic
GCTGCAAATCTAGTAAAGAA+TGG 0.519363 1_2:-4587333 Msa0050650:CDS
GATGAGAAGATCGTCGGAGT+TGG 0.521387 1_2:+4589210 None:intergenic
TCTTAGTGAGCAACAGCTTG+TGG 0.523786 1_2:-4588619 Msa0050650:CDS
TCGAATACATACTCCAGTCT+GGG 0.524172 1_2:-4587479 Msa0050650:CDS
GATACATGCCTGATCCTTGA+CGG 0.527318 1_2:+4588841 None:intergenic
TTGTGCGGCGGTTGCAACAG+CGG 0.528593 1_2:+4589249 None:intergenic
GGAGTTGGTGTCATCGGAGA+GGG 0.533186 1_2:+4589225 None:intergenic
GAACGTAATTCTTGTGACTC+TGG 0.537907 1_2:-4587531 Msa0050650:CDS
AGATTGTTAGTAGGAAGAAT+CGG 0.540576 1_2:+4588905 None:intergenic
ATCGGAGAGGGTTTGTGCGG+CGG 0.540988 1_2:+4589237 None:intergenic
TATGCTTACACCGGAAGAGA+TGG 0.544908 1_2:-4587435 Msa0050650:CDS
GTGCTTTGGCACAGATGTAT+GGG 0.545478 1_2:+4587100 None:intergenic
GGCCAGAATTGGGGTGAGGA+AGG 0.548238 1_2:-4586979 Msa0050650:CDS
TGTGACTCTGGCTGTAACGG+TGG 0.548240 1_2:-4587519 Msa0050650:CDS
GGAGCCTTCTGAGCGTGAGC+CGG 0.555112 1_2:+4588926 None:intergenic
AGTACAACTGGAGCTTTGGA+AGG 0.555301 1_2:-4588675 Msa0050650:CDS
TCCTCTGGGAGATTGTTAGT+AGG 0.556352 1_2:+4588896 None:intergenic
TCTTGTGACTCTGGCTGTAA+CGG 0.557182 1_2:-4587522 Msa0050650:CDS
TGCAGAGGCCGAAATGTATG+TGG 0.559622 1_2:-4586943 Msa0050650:CDS
CGGTTGCAACAGCGGCGAAG+AGG 0.560629 1_2:+4589257 None:intergenic
AACGACACTGAAGTTAGATA+CGG 0.563918 1_2:+4587377 None:intergenic
AATTCATGGGGCCAGAATTG+GGG 0.569604 1_2:-4586988 Msa0050650:CDS
TTTACCGGCTCACGCTCAGA+AGG 0.571687 1_2:-4588930 Msa0050650:CDS
ATACATGCCTGATCCTTGAC+GGG 0.580358 1_2:+4588842 None:intergenic
GAGCAAATTATTTGGCGACT+GGG 0.581395 1_2:-4588653 Msa0050650:CDS
ATGGGGCCAGAATTGGGGTG+AGG 0.585321 1_2:-4586983 Msa0050650:CDS
CTGATCCTTGACGGGAGTGA+CGG 0.594529 1_2:+4588850 None:intergenic
AGATTGAGCTGCAGCAACAG+TGG 0.595282 1_2:+4586903 None:intergenic
TGGTGTGATTAGGGTTCATG+CGG 0.605339 1_2:-4588714 Msa0050650:intron
CTTGATCCTTCTGCGCAACA+CGG 0.608322 1_2:-4589025 Msa0050650:CDS
AGGTGCCGTCACTCCCGTCA+AGG 0.610158 1_2:-4588855 Msa0050650:CDS
GAGTGCGATGAGGAAACGAT+GGG 0.610185 1_2:+4589282 None:intergenic
AGAGTGCGATGAGGAAACGA+TGG 0.615222 1_2:+4589281 None:intergenic
CAAAGCACGTTTGGATCATG+GGG 0.618631 1_2:-4587085 Msa0050650:CDS
AGGCCGAAATGTATGTGGAG+TGG 0.625354 1_2:-4586938 Msa0050650:CDS
TTGTCGGATGAGAAGATCGT+CGG 0.630035 1_2:+4589204 None:intergenic
GATGAGGAAACGATGGGCCA+TGG 0.632658 1_2:+4589288 None:intergenic
CGAATACATACTCCAGTCTG+GGG 0.633443 1_2:-4587478 Msa0050650:CDS
GTTTAGTATGTGATCTTCAG+CGG 0.633912 1_2:+4589171 None:intergenic
TGCAGCAACAGTGGAGACCA+TGG 0.639409 1_2:+4586912 None:intergenic
GGATATTATAAGATCTGCAG+AGG 0.643121 1_2:-4586958 Msa0050650:CDS
AATCTTGCAGTGTGATCCAG+AGG 0.643554 1_2:-4587553 Msa0050650:intron
GTCATCGGAGAGGGTTTGTG+CGG 0.646567 1_2:+4589234 None:intergenic
CGGAGTTGGTGTCATCGGAG+AGG 0.647919 1_2:+4589224 None:intergenic
TGTATGTGGAGTGGATTCCA+TGG 0.649722 1_2:-4586929 Msa0050650:CDS
ACAATTAGCTACCTGCAAGA+GGG 0.660807 1_2:+4587310 None:intergenic
GCTTGTGGATTGTGATCATG+TGG 0.675150 1_2:-4588604 Msa0050650:intron
GAAAAGGACTATGCTTACAC+CGG 0.677300 1_2:-4587444 Msa0050650:CDS
CGAAGAGGAAGAGTGCGATG+AGG 0.679065 1_2:+4589272 None:intergenic
TCCTACTAACAATCTCCCAG+AGG 0.684912 1_2:-4588897 Msa0050650:CDS
TGGATCATAAAGAATTCATG+GGG 0.698117 1_2:-4587000 Msa0050650:CDS
GAATACATACTCCAGTCTGG+GGG 0.711512 1_2:-4587477 Msa0050650:CDS
CAGTTGCTATCAATGCTGCG+TGG 0.724510 1_2:-4587152 Msa0050650:CDS
TGGATGCAGACATATATGAG+TGG 0.766052 1_2:-4587132 Msa0050650:CDS
TCAGTCCAAGAAACTGACGA+CGG 0.796203 1_2:+4588966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTAATTTTCTTTTATATT+TGG - chr1_2:4587370-4587389 Msa0050650:CDS 10.0%
!! AACAAAAATTTAAACAAAAA+AGG + chr1_2:4587632-4587651 None:intergenic 10.0%
!! TTTGTTTATTTATTTAAATG+TGG - chr1_2:4587817-4587836 Msa0050650:intron 10.0%
!!! TACTAATTTTCTTTTATATT+TGG - chr1_2:4587370-4587389 Msa0050650:CDS 10.0%
!! AACAAAAATTTAAACAAAAA+AGG + chr1_2:4587632-4587651 None:intergenic 10.0%
!! TTTGTTTATTTATTTAAATG+TGG - chr1_2:4587817-4587836 Msa0050650:intron 10.0%
!!! ATTTTCTTTTATATTTGGAA+CGG - chr1_2:4587375-4587394 Msa0050650:CDS 15.0%
!! AATTGAATTGAATCAATAAT+TGG - chr1_2:4587719-4587738 Msa0050650:intron 15.0%
!! TAATAATAATATTATGGATG+AGG + chr1_2:4588415-4588434 None:intergenic 15.0%
!! AAACAAAAACATCAAAATAA+GGG + chr1_2:4588473-4588492 None:intergenic 15.0%
!! TAAACAAAAACATCAAAATA+AGG + chr1_2:4588474-4588493 None:intergenic 15.0%
!!! TTAATTTTATAGTGATGTAA+AGG - chr1_2:4588491-4588510 Msa0050650:intron 15.0%
!!! TATCTTTTAGCATAAAAAAA+TGG + chr1_2:4588571-4588590 None:intergenic 15.0%
!! AATTCGTATCATAAAAATTA+GGG + chr1_2:4588971-4588990 None:intergenic 15.0%
!!! ATTTTCTTTTATATTTGGAA+CGG - chr1_2:4587375-4587394 Msa0050650:CDS 15.0%
!! AATTGAATTGAATCAATAAT+TGG - chr1_2:4587719-4587738 Msa0050650:intron 15.0%
!! TAATAATAATATTATGGATG+AGG + chr1_2:4588415-4588434 None:intergenic 15.0%
!! AAACAAAAACATCAAAATAA+GGG + chr1_2:4588473-4588492 None:intergenic 15.0%
!! TAAACAAAAACATCAAAATA+AGG + chr1_2:4588474-4588493 None:intergenic 15.0%
!!! TTAATTTTATAGTGATGTAA+AGG - chr1_2:4588491-4588510 Msa0050650:intron 15.0%
!!! TATCTTTTAGCATAAAAAAA+TGG + chr1_2:4588571-4588590 None:intergenic 15.0%
!! AATTCGTATCATAAAAATTA+GGG + chr1_2:4588971-4588990 None:intergenic 15.0%
!! TTAATGATTAAGCATGATTA+TGG - chr1_2:4587422-4587441 Msa0050650:CDS 20.0%
!!! ATTGATGATTTGTTTTGATT+TGG - chr1_2:4587452-4587471 Msa0050650:CDS 20.0%
!!! TTTGTTTAAATTTTTGTTGC+AGG - chr1_2:4587634-4587653 Msa0050650:intron 20.0%
!! TTCAATTCAATTCATGAATT+AGG + chr1_2:4587711-4587730 None:intergenic 20.0%
!!! GTACTTTCATTTTTAAAAGA+TGG - chr1_2:4588184-4588203 Msa0050650:intron 20.0%
!! GTAATAATCATAATCAAAAG+AGG + chr1_2:4588320-4588339 None:intergenic 20.0%
!! AACAAAAACATCAAAATAAG+GGG + chr1_2:4588472-4588491 None:intergenic 20.0%
!! CAATTCGTATCATAAAAATT+AGG + chr1_2:4588972-4588991 None:intergenic 20.0%
!! TTAATGATTAAGCATGATTA+TGG - chr1_2:4587422-4587441 Msa0050650:CDS 20.0%
!!! ATTGATGATTTGTTTTGATT+TGG - chr1_2:4587452-4587471 Msa0050650:CDS 20.0%
!!! TTTGTTTAAATTTTTGTTGC+AGG - chr1_2:4587634-4587653 Msa0050650:intron 20.0%
!! TTCAATTCAATTCATGAATT+AGG + chr1_2:4587711-4587730 None:intergenic 20.0%
!!! GTACTTTCATTTTTAAAAGA+TGG - chr1_2:4588184-4588203 Msa0050650:intron 20.0%
!! GTAATAATCATAATCAAAAG+AGG + chr1_2:4588320-4588339 None:intergenic 20.0%
!! AACAAAAACATCAAAATAAG+GGG + chr1_2:4588472-4588491 None:intergenic 20.0%
!! CAATTCGTATCATAAAAATT+AGG + chr1_2:4588972-4588991 None:intergenic 20.0%
!! CACTAAATTTTCCGATTTAA+CGG - chr1_2:4587187-4587206 Msa0050650:intron 25.0%
!!! TCTTTTTATTTTGGTGTGTA+TGG - chr1_2:4587658-4587677 Msa0050650:intron 25.0%
! GTTTGTGGTTATTATTTGTT+TGG - chr1_2:4587680-4587699 Msa0050650:intron 25.0%
!!! AATTTGTTAATCCAAAGAGA+TGG - chr1_2:4587912-4587931 Msa0050650:intron 25.0%
! GACTCTAATTATTGTAAAGA+GGG + chr1_2:4588246-4588265 None:intergenic 25.0%
! AGACTCTAATTATTGTAAAG+AGG + chr1_2:4588247-4588266 None:intergenic 25.0%
! CATTAATTAATATGCATCGA+TGG + chr1_2:4588607-4588626 None:intergenic 25.0%
! CATCGATGCATATTAATTAA+TGG - chr1_2:4588605-4588624 Msa0050650:CDS 25.0%
!! AAGTCGGTATTTCTATAATT+AGG + chr1_2:4588999-4589018 None:intergenic 25.0%
!! CACTAAATTTTCCGATTTAA+CGG - chr1_2:4587187-4587206 Msa0050650:intron 25.0%
!!! TCTTTTTATTTTGGTGTGTA+TGG - chr1_2:4587658-4587677 Msa0050650:intron 25.0%
! GTTTGTGGTTATTATTTGTT+TGG - chr1_2:4587680-4587699 Msa0050650:intron 25.0%
!!! AATTTGTTAATCCAAAGAGA+TGG - chr1_2:4587912-4587931 Msa0050650:intron 25.0%
! GACTCTAATTATTGTAAAGA+GGG + chr1_2:4588246-4588265 None:intergenic 25.0%
! AGACTCTAATTATTGTAAAG+AGG + chr1_2:4588247-4588266 None:intergenic 25.0%
! CATTAATTAATATGCATCGA+TGG + chr1_2:4588607-4588626 None:intergenic 25.0%
! CATCGATGCATATTAATTAA+TGG - chr1_2:4588605-4588624 Msa0050650:CDS 25.0%
!! AAGTCGGTATTTCTATAATT+AGG + chr1_2:4588999-4589018 None:intergenic 25.0%
AGATTGTTAGTAGGAAGAAT+CGG + chr1_2:4587284-4587303 None:intergenic 30.0%
!!! TGTTTTGATTTGGTGTGATT+AGG - chr1_2:4587462-4587481 Msa0050650:CDS 30.0%
!!! GTTTTGATTTGGTGTGATTA+GGG - chr1_2:4587463-4587482 Msa0050650:CDS 30.0%
TTTGGAAGGAGCAAATTATT+TGG - chr1_2:4587525-4587544 Msa0050650:CDS 30.0%
!! GTTGCAGGTTCTTTTTATTT+TGG - chr1_2:4587649-4587668 Msa0050650:intron 30.0%
TTCTTCAGATGTTCTGTTAT+TGG - chr1_2:4587756-4587775 Msa0050650:intron 30.0%
! TTAAATGTGGATTACAAACC+TGG - chr1_2:4587830-4587849 Msa0050650:intron 30.0%
!!! TGGAACCATTTGTTTTAGAA+TGG - chr1_2:4587932-4587951 Msa0050650:intron 30.0%
!! GACAACCATTCTAAAACAAA+TGG + chr1_2:4587940-4587959 None:intergenic 30.0%
GATCATAATGTGTTCCTATA+TGG - chr1_2:4588028-4588047 Msa0050650:intron 30.0%
! TTCTTCTTAAGCTGTTTCAA+CGG - chr1_2:4588101-4588120 Msa0050650:intron 30.0%
TTATGGATGAGGATAAAACT+CGG + chr1_2:4588404-4588423 None:intergenic 30.0%
! TAATTAATATGCATCGATGG+TGG + chr1_2:4588604-4588623 None:intergenic 30.0%
TTACTAGATTTGCAGCAATT+TGG + chr1_2:4588849-4588868 None:intergenic 30.0%
GAATTCTTTATGATCCAGTA+AGG + chr1_2:4589183-4589202 None:intergenic 30.0%
ACTGGATCATAAAGAATTCA+TGG - chr1_2:4589184-4589203 Msa0050650:CDS 30.0%
CTGGATCATAAAGAATTCAT+GGG - chr1_2:4589185-4589204 Msa0050650:CDS 30.0%
TGGATCATAAAGAATTCATG+GGG - chr1_2:4589186-4589205 Msa0050650:CDS 30.0%
AGATTGTTAGTAGGAAGAAT+CGG + chr1_2:4587284-4587303 None:intergenic 30.0%
!!! TGTTTTGATTTGGTGTGATT+AGG - chr1_2:4587462-4587481 Msa0050650:CDS 30.0%
!!! GTTTTGATTTGGTGTGATTA+GGG - chr1_2:4587463-4587482 Msa0050650:CDS 30.0%
TTTGGAAGGAGCAAATTATT+TGG - chr1_2:4587525-4587544 Msa0050650:CDS 30.0%
!! GTTGCAGGTTCTTTTTATTT+TGG - chr1_2:4587649-4587668 Msa0050650:intron 30.0%
TTCTTCAGATGTTCTGTTAT+TGG - chr1_2:4587756-4587775 Msa0050650:intron 30.0%
! TTAAATGTGGATTACAAACC+TGG - chr1_2:4587830-4587849 Msa0050650:intron 30.0%
!!! TGGAACCATTTGTTTTAGAA+TGG - chr1_2:4587932-4587951 Msa0050650:intron 30.0%
!! GACAACCATTCTAAAACAAA+TGG + chr1_2:4587940-4587959 None:intergenic 30.0%
GATCATAATGTGTTCCTATA+TGG - chr1_2:4588028-4588047 Msa0050650:intron 30.0%
! TTCTTCTTAAGCTGTTTCAA+CGG - chr1_2:4588101-4588120 Msa0050650:intron 30.0%
TTATGGATGAGGATAAAACT+CGG + chr1_2:4588404-4588423 None:intergenic 30.0%
! TAATTAATATGCATCGATGG+TGG + chr1_2:4588604-4588623 None:intergenic 30.0%
TTACTAGATTTGCAGCAATT+TGG + chr1_2:4588849-4588868 None:intergenic 30.0%
GAATTCTTTATGATCCAGTA+AGG + chr1_2:4589183-4589202 None:intergenic 30.0%
ACTGGATCATAAAGAATTCA+TGG - chr1_2:4589184-4589203 Msa0050650:CDS 30.0%
CTGGATCATAAAGAATTCAT+GGG - chr1_2:4589185-4589204 Msa0050650:CDS 30.0%
TGGATCATAAAGAATTCATG+GGG - chr1_2:4589186-4589205 Msa0050650:CDS 30.0%
GTTTAGTATGTGATCTTCAG+CGG + chr1_2:4587018-4587037 None:intergenic 35.0%
! GAAGAACATGATTACCGATT+TGG - chr1_2:4587095-4587114 Msa0050650:CDS 35.0%
! TTGATTTGAACACGCCAAAT+CGG + chr1_2:4587112-4587131 None:intergenic 35.0%
! TTTTAGTACAACTGGAGCTT+TGG - chr1_2:4587507-4587526 Msa0050650:CDS 35.0%
!! ATTTTGGTGTGTATGGTTTG+TGG - chr1_2:4587665-4587684 Msa0050650:intron 35.0%
ACTGAATTGAACCAACATCT+TGG - chr1_2:4587856-4587875 Msa0050650:intron 35.0%
AACAAATGGTTCCATCTCTT+TGG + chr1_2:4587926-4587945 None:intergenic 35.0%
GATTCAACTCTACTCCATAT+AGG + chr1_2:4588045-4588064 None:intergenic 35.0%
TAAGAAGAATCCAACCAAAC+AGG + chr1_2:4588090-4588109 None:intergenic 35.0%
! TCTTCTTAAGCTGTTTCAAC+GGG - chr1_2:4588102-4588121 Msa0050650:intron 35.0%
!!! GACTGAGTTTTTTAAACCTG+AGG - chr1_2:4588361-4588380 Msa0050650:intron 35.0%
TTTAAACCTGAGGTCAAAGA+TGG - chr1_2:4588371-4588390 Msa0050650:intron 35.0%
TTAAACCTGAGGTCAAAGAT+GGG - chr1_2:4588372-4588391 Msa0050650:intron 35.0%
ACATGAGAATACAACAAGCA+TGG + chr1_2:4588543-4588562 None:intergenic 35.0%
AACGACACTGAAGTTAGATA+CGG + chr1_2:4588812-4588831 None:intergenic 35.0%
GCTGCAAATCTAGTAAAGAA+TGG - chr1_2:4588853-4588872 Msa0050650:CDS 35.0%
!! ATACCGACTTATGCTTTGTT+TGG - chr1_2:4589009-4589028 Msa0050650:CDS 35.0%
GGATATTATAAGATCTGCAG+AGG - chr1_2:4589228-4589247 Msa0050650:CDS 35.0%
AATCCACTCCACATACATTT+CGG + chr1_2:4589254-4589273 None:intergenic 35.0%
GTTTAGTATGTGATCTTCAG+CGG + chr1_2:4587018-4587037 None:intergenic 35.0%
! GAAGAACATGATTACCGATT+TGG - chr1_2:4587095-4587114 Msa0050650:CDS 35.0%
! TTGATTTGAACACGCCAAAT+CGG + chr1_2:4587112-4587131 None:intergenic 35.0%
! TTTTAGTACAACTGGAGCTT+TGG - chr1_2:4587507-4587526 Msa0050650:CDS 35.0%
!! ATTTTGGTGTGTATGGTTTG+TGG - chr1_2:4587665-4587684 Msa0050650:intron 35.0%
ACTGAATTGAACCAACATCT+TGG - chr1_2:4587856-4587875 Msa0050650:intron 35.0%
AACAAATGGTTCCATCTCTT+TGG + chr1_2:4587926-4587945 None:intergenic 35.0%
GATTCAACTCTACTCCATAT+AGG + chr1_2:4588045-4588064 None:intergenic 35.0%
TAAGAAGAATCCAACCAAAC+AGG + chr1_2:4588090-4588109 None:intergenic 35.0%
! TCTTCTTAAGCTGTTTCAAC+GGG - chr1_2:4588102-4588121 Msa0050650:intron 35.0%
!!! GACTGAGTTTTTTAAACCTG+AGG - chr1_2:4588361-4588380 Msa0050650:intron 35.0%
TTTAAACCTGAGGTCAAAGA+TGG - chr1_2:4588371-4588390 Msa0050650:intron 35.0%
TTAAACCTGAGGTCAAAGAT+GGG - chr1_2:4588372-4588391 Msa0050650:intron 35.0%
ACATGAGAATACAACAAGCA+TGG + chr1_2:4588543-4588562 None:intergenic 35.0%
AACGACACTGAAGTTAGATA+CGG + chr1_2:4588812-4588831 None:intergenic 35.0%
GCTGCAAATCTAGTAAAGAA+TGG - chr1_2:4588853-4588872 Msa0050650:CDS 35.0%
!! ATACCGACTTATGCTTTGTT+TGG - chr1_2:4589009-4589028 Msa0050650:CDS 35.0%
GGATATTATAAGATCTGCAG+AGG - chr1_2:4589228-4589247 Msa0050650:CDS 35.0%
AATCCACTCCACATACATTT+CGG + chr1_2:4589254-4589273 None:intergenic 35.0%
!! ATCTCCCAGAGGATTTTGAT+TGG - chr1_2:4587300-4587319 Msa0050650:intron 40.0%
! TGTTGGGCTTTTAGTACAAC+TGG - chr1_2:4587499-4587518 Msa0050650:CDS 40.0%
GAGCAAATTATTTGGCGACT+GGG - chr1_2:4587533-4587552 Msa0050650:CDS 40.0%
TTGGTTCAATTCAGTTCACC+AGG + chr1_2:4587851-4587870 None:intergenic 40.0%
AACCAACATCTTGGTTGAGT+TGG - chr1_2:4587865-4587884 Msa0050650:intron 40.0%
AACCAACTCAACCAAGATGT+TGG + chr1_2:4587870-4587889 None:intergenic 40.0%
!! CATCTTGGTTGAGTTGGTTA+TGG - chr1_2:4587871-4587890 Msa0050650:intron 40.0%
!! TGGTTGAGTTGGTTATGGTT+TGG - chr1_2:4587876-4587895 Msa0050650:intron 40.0%
!! GGTTGAGTTGGTTATGGTTT+GGG - chr1_2:4587877-4587896 Msa0050650:intron 40.0%
TGGAGTAGAGTTGAATCACT+TGG - chr1_2:4588048-4588067 Msa0050650:intron 40.0%
AAGAATCCAACCAAACAGGT+AGG + chr1_2:4588086-4588105 None:intergenic 40.0%
TAGAGTCTGAGAAAGACTTG+AGG - chr1_2:4588259-4588278 Msa0050650:intron 40.0%
CTTGAGGACTTCCTTAAGAT+CGG - chr1_2:4588275-4588294 Msa0050650:intron 40.0%
! ACTTCCTTAAGATCGGTTCT+GGG - chr1_2:4588282-4588301 Msa0050650:intron 40.0%
TCACAAGAATTACGTTCCTC+TGG + chr1_2:4588652-4588671 None:intergenic 40.0%
GAACGTAATTCTTGTGACTC+TGG - chr1_2:4588655-4588674 Msa0050650:CDS 40.0%
TTCGAATACATACTCCAGTC+TGG - chr1_2:4588706-4588725 Msa0050650:intron 40.0%
TCGAATACATACTCCAGTCT+GGG - chr1_2:4588707-4588726 Msa0050650:intron 40.0%
GAAAAGGACTATGCTTACAC+CGG - chr1_2:4588742-4588761 Msa0050650:intron 40.0%
!! CTTGCTTTTGTCAAACTTGC+AGG + chr1_2:4588779-4588798 None:intergenic 40.0%
ACAATTAGCTACCTGCAAGA+GGG + chr1_2:4588879-4588898 None:intergenic 40.0%
AACAATTAGCTACCTGCAAG+AGG + chr1_2:4588880-4588899 None:intergenic 40.0%
GCACCAAACAAAGCATAAGT+CGG + chr1_2:4589015-4589034 None:intergenic 40.0%
TGGATGCAGACATATATGAG+TGG - chr1_2:4589054-4589073 Msa0050650:CDS 40.0%
! GGCTTTTCCTTCAATCGAAT+GGG + chr1_2:4589162-4589181 None:intergenic 40.0%
! AGGCTTTTCCTTCAATCGAA+TGG + chr1_2:4589163-4589182 None:intergenic 40.0%
GATTGAAGGAAAAGCCTTAC+TGG - chr1_2:4589166-4589185 Msa0050650:CDS 40.0%
!! ATCTCCCAGAGGATTTTGAT+TGG - chr1_2:4587300-4587319 Msa0050650:intron 40.0%
! TGTTGGGCTTTTAGTACAAC+TGG - chr1_2:4587499-4587518 Msa0050650:CDS 40.0%
GAGCAAATTATTTGGCGACT+GGG - chr1_2:4587533-4587552 Msa0050650:CDS 40.0%
TTGGTTCAATTCAGTTCACC+AGG + chr1_2:4587851-4587870 None:intergenic 40.0%
AACCAACATCTTGGTTGAGT+TGG - chr1_2:4587865-4587884 Msa0050650:intron 40.0%
AACCAACTCAACCAAGATGT+TGG + chr1_2:4587870-4587889 None:intergenic 40.0%
!! CATCTTGGTTGAGTTGGTTA+TGG - chr1_2:4587871-4587890 Msa0050650:intron 40.0%
!! TGGTTGAGTTGGTTATGGTT+TGG - chr1_2:4587876-4587895 Msa0050650:intron 40.0%
!! GGTTGAGTTGGTTATGGTTT+GGG - chr1_2:4587877-4587896 Msa0050650:intron 40.0%
TGGAGTAGAGTTGAATCACT+TGG - chr1_2:4588048-4588067 Msa0050650:intron 40.0%
AAGAATCCAACCAAACAGGT+AGG + chr1_2:4588086-4588105 None:intergenic 40.0%
TAGAGTCTGAGAAAGACTTG+AGG - chr1_2:4588259-4588278 Msa0050650:intron 40.0%
CTTGAGGACTTCCTTAAGAT+CGG - chr1_2:4588275-4588294 Msa0050650:intron 40.0%
! ACTTCCTTAAGATCGGTTCT+GGG - chr1_2:4588282-4588301 Msa0050650:intron 40.0%
TCACAAGAATTACGTTCCTC+TGG + chr1_2:4588652-4588671 None:intergenic 40.0%
GAACGTAATTCTTGTGACTC+TGG - chr1_2:4588655-4588674 Msa0050650:CDS 40.0%
TTCGAATACATACTCCAGTC+TGG - chr1_2:4588706-4588725 Msa0050650:intron 40.0%
TCGAATACATACTCCAGTCT+GGG - chr1_2:4588707-4588726 Msa0050650:intron 40.0%
GAAAAGGACTATGCTTACAC+CGG - chr1_2:4588742-4588761 Msa0050650:intron 40.0%
!! CTTGCTTTTGTCAAACTTGC+AGG + chr1_2:4588779-4588798 None:intergenic 40.0%
ACAATTAGCTACCTGCAAGA+GGG + chr1_2:4588879-4588898 None:intergenic 40.0%
AACAATTAGCTACCTGCAAG+AGG + chr1_2:4588880-4588899 None:intergenic 40.0%
GCACCAAACAAAGCATAAGT+CGG + chr1_2:4589015-4589034 None:intergenic 40.0%
TGGATGCAGACATATATGAG+TGG - chr1_2:4589054-4589073 Msa0050650:CDS 40.0%
! GGCTTTTCCTTCAATCGAAT+GGG + chr1_2:4589162-4589181 None:intergenic 40.0%
! AGGCTTTTCCTTCAATCGAA+TGG + chr1_2:4589163-4589182 None:intergenic 40.0%
GATTGAAGGAAAAGCCTTAC+TGG - chr1_2:4589166-4589185 Msa0050650:CDS 40.0%
TTGTCGGATGAGAAGATCGT+CGG + chr1_2:4586985-4587004 None:intergenic 45.0%
GAACTCAGACGCCGTTAAAT+CGG + chr1_2:4587201-4587220 None:intergenic 45.0%
TCAGTCCAAGAAACTGACGA+CGG + chr1_2:4587223-4587242 None:intergenic 45.0%
GAACAAACGTCTCCGTTTAC+CGG - chr1_2:4587241-4587260 Msa0050650:intron 45.0%
TCCTACTAACAATCTCCCAG+AGG - chr1_2:4587289-4587308 Msa0050650:intron 45.0%
! TCCTCTGGGAGATTGTTAGT+AGG + chr1_2:4587293-4587312 None:intergenic 45.0%
!!! GATTTTGATTGGCGCGAGAA+AGG - chr1_2:4587311-4587330 Msa0050650:intron 45.0%
ATACATGCCTGATCCTTGAC+GGG + chr1_2:4587347-4587366 None:intergenic 45.0%
GATACATGCCTGATCCTTGA+CGG + chr1_2:4587348-4587367 None:intergenic 45.0%
TGGTGTGATTAGGGTTCATG+CGG - chr1_2:4587472-4587491 Msa0050650:CDS 45.0%
!! AGTACAACTGGAGCTTTGGA+AGG - chr1_2:4587511-4587530 Msa0050650:CDS 45.0%
GGAGCAAATTATTTGGCGAC+TGG - chr1_2:4587532-4587551 Msa0050650:CDS 45.0%
TCTTAGTGAGCAACAGCTTG+TGG - chr1_2:4587567-4587586 Msa0050650:intron 45.0%
! GCTTGTGGATTGTGATCATG+TGG - chr1_2:4587582-4587601 Msa0050650:intron 45.0%
TGCAATGAGTCCTACCTGTT+TGG - chr1_2:4588073-4588092 Msa0050650:intron 45.0%
ATGAGTCCTACCTGTTTGGT+TGG - chr1_2:4588077-4588096 Msa0050650:intron 45.0%
AAAGAGGGAGTGAGCACTTT+AGG + chr1_2:4588231-4588250 None:intergenic 45.0%
! GACTTCCTTAAGATCGGTTC+TGG - chr1_2:4588281-4588300 Msa0050650:intron 45.0%
GTTTCCCAGAACCGATCTTA+AGG + chr1_2:4588289-4588308 None:intergenic 45.0%
AATCTTGCAGTGTGATCCAG+AGG - chr1_2:4588633-4588652 Msa0050650:CDS 45.0%
TCTTGTGACTCTGGCTGTAA+CGG - chr1_2:4588664-4588683 Msa0050650:CDS 45.0%
CGAATACATACTCCAGTCTG+GGG - chr1_2:4588708-4588727 Msa0050650:intron 45.0%
GAATACATACTCCAGTCTGG+GGG - chr1_2:4588709-4588728 Msa0050650:intron 45.0%
TATGCTTACACCGGAAGAGA+TGG - chr1_2:4588751-4588770 Msa0050650:intron 45.0%
GTGCTTTGGCACAGATGTAT+GGG + chr1_2:4589089-4589108 None:intergenic 45.0%
CCAAAGCACGTTTGGATCAT+GGG - chr1_2:4589100-4589119 Msa0050650:CDS 45.0%
CAAAGCACGTTTGGATCATG+GGG - chr1_2:4589101-4589120 Msa0050650:CDS 45.0%
GATCATGGGGTTCTTCTAGT+TGG - chr1_2:4589114-4589133 Msa0050650:CDS 45.0%
!! GGGGTTCTTCTAGTTGGTTT+TGG - chr1_2:4589120-4589139 Msa0050650:CDS 45.0%
!!! CTTCTAGTTGGTTTTGGCAG+TGG - chr1_2:4589126-4589145 Msa0050650:CDS 45.0%
CTATGCTCCCATTCGATTGA+AGG - chr1_2:4589152-4589171 Msa0050650:CDS 45.0%
AGAATTCATGGGGCCAGAAT+TGG - chr1_2:4589196-4589215 Msa0050650:CDS 45.0%
GAATTCATGGGGCCAGAATT+GGG - chr1_2:4589197-4589216 Msa0050650:CDS 45.0%
AATTCATGGGGCCAGAATTG+GGG - chr1_2:4589198-4589217 Msa0050650:CDS 45.0%
! TGTATGTGGAGTGGATTCCA+TGG - chr1_2:4589257-4589276 Msa0050650:CDS 45.0%
TTGTCGGATGAGAAGATCGT+CGG + chr1_2:4586985-4587004 None:intergenic 45.0%
GAACTCAGACGCCGTTAAAT+CGG + chr1_2:4587201-4587220 None:intergenic 45.0%
TCAGTCCAAGAAACTGACGA+CGG + chr1_2:4587223-4587242 None:intergenic 45.0%
GAACAAACGTCTCCGTTTAC+CGG - chr1_2:4587241-4587260 Msa0050650:intron 45.0%
TCCTACTAACAATCTCCCAG+AGG - chr1_2:4587289-4587308 Msa0050650:intron 45.0%
! TCCTCTGGGAGATTGTTAGT+AGG + chr1_2:4587293-4587312 None:intergenic 45.0%
!!! GATTTTGATTGGCGCGAGAA+AGG - chr1_2:4587311-4587330 Msa0050650:intron 45.0%
ATACATGCCTGATCCTTGAC+GGG + chr1_2:4587347-4587366 None:intergenic 45.0%
GATACATGCCTGATCCTTGA+CGG + chr1_2:4587348-4587367 None:intergenic 45.0%
TGGTGTGATTAGGGTTCATG+CGG - chr1_2:4587472-4587491 Msa0050650:CDS 45.0%
!! AGTACAACTGGAGCTTTGGA+AGG - chr1_2:4587511-4587530 Msa0050650:CDS 45.0%
GGAGCAAATTATTTGGCGAC+TGG - chr1_2:4587532-4587551 Msa0050650:CDS 45.0%
TCTTAGTGAGCAACAGCTTG+TGG - chr1_2:4587567-4587586 Msa0050650:intron 45.0%
! GCTTGTGGATTGTGATCATG+TGG - chr1_2:4587582-4587601 Msa0050650:intron 45.0%
TGCAATGAGTCCTACCTGTT+TGG - chr1_2:4588073-4588092 Msa0050650:intron 45.0%
ATGAGTCCTACCTGTTTGGT+TGG - chr1_2:4588077-4588096 Msa0050650:intron 45.0%
AAAGAGGGAGTGAGCACTTT+AGG + chr1_2:4588231-4588250 None:intergenic 45.0%
! GACTTCCTTAAGATCGGTTC+TGG - chr1_2:4588281-4588300 Msa0050650:intron 45.0%
GTTTCCCAGAACCGATCTTA+AGG + chr1_2:4588289-4588308 None:intergenic 45.0%
AATCTTGCAGTGTGATCCAG+AGG - chr1_2:4588633-4588652 Msa0050650:CDS 45.0%
TCTTGTGACTCTGGCTGTAA+CGG - chr1_2:4588664-4588683 Msa0050650:CDS 45.0%
CGAATACATACTCCAGTCTG+GGG - chr1_2:4588708-4588727 Msa0050650:intron 45.0%
GAATACATACTCCAGTCTGG+GGG - chr1_2:4588709-4588728 Msa0050650:intron 45.0%
TATGCTTACACCGGAAGAGA+TGG - chr1_2:4588751-4588770 Msa0050650:intron 45.0%
GTGCTTTGGCACAGATGTAT+GGG + chr1_2:4589089-4589108 None:intergenic 45.0%
CCAAAGCACGTTTGGATCAT+GGG - chr1_2:4589100-4589119 Msa0050650:CDS 45.0%
CAAAGCACGTTTGGATCATG+GGG - chr1_2:4589101-4589120 Msa0050650:CDS 45.0%
GATCATGGGGTTCTTCTAGT+TGG - chr1_2:4589114-4589133 Msa0050650:CDS 45.0%
!! GGGGTTCTTCTAGTTGGTTT+TGG - chr1_2:4589120-4589139 Msa0050650:CDS 45.0%
!!! CTTCTAGTTGGTTTTGGCAG+TGG - chr1_2:4589126-4589145 Msa0050650:CDS 45.0%
CTATGCTCCCATTCGATTGA+AGG - chr1_2:4589152-4589171 Msa0050650:CDS 45.0%
AGAATTCATGGGGCCAGAAT+TGG - chr1_2:4589196-4589215 Msa0050650:CDS 45.0%
GAATTCATGGGGCCAGAATT+GGG - chr1_2:4589197-4589216 Msa0050650:CDS 45.0%
AATTCATGGGGCCAGAATTG+GGG - chr1_2:4589198-4589217 Msa0050650:CDS 45.0%
! TGTATGTGGAGTGGATTCCA+TGG - chr1_2:4589257-4589276 Msa0050650:CDS 45.0%
!! CATAAATAATAATAATATTA+TGG + chr1_2:4588421-4588440 None:intergenic 5.0%
!! CATAAATAATAATAATATTA+TGG + chr1_2:4588421-4588440 None:intergenic 5.0%
GAGTGCGATGAGGAAACGAT+GGG + chr1_2:4586907-4586926 None:intergenic 50.0%
AGAGTGCGATGAGGAAACGA+TGG + chr1_2:4586908-4586927 None:intergenic 50.0%
!! ATCGTCGGAGTTGGTGTCAT+CGG + chr1_2:4586970-4586989 None:intergenic 50.0%
GATGAGAAGATCGTCGGAGT+TGG + chr1_2:4586979-4586998 None:intergenic 50.0%
CTTGATCCTTCTGCGCAACA+CGG - chr1_2:4587161-4587180 Msa0050650:intron 50.0%
GAGTTCCGTCGTCAGTTTCT+TGG - chr1_2:4587215-4587234 Msa0050650:intron 50.0%
CGCGCCAATCAAAATCCTCT+GGG + chr1_2:4587307-4587326 None:intergenic 50.0%
TCGCGCCAATCAAAATCCTC+TGG + chr1_2:4587308-4587327 None:intergenic 50.0%
CACGCTCTGATGTCAACGTA+AGG - chr1_2:4588129-4588148 Msa0050650:intron 50.0%
ACCTGAGGTCAAAGATGGGT+TGG - chr1_2:4588376-4588395 Msa0050650:intron 50.0%
TCCAACCCATCTTTGACCTC+AGG + chr1_2:4588380-4588399 None:intergenic 50.0%
TGGGGGAGTAGTGTCAGAAA+AGG - chr1_2:4588726-4588745 Msa0050650:intron 50.0%
CTTGCAGGATCCATCTCTTC+CGG + chr1_2:4588764-4588783 None:intergenic 50.0%
GTAAAGAATGGCCCTCTTGC+AGG - chr1_2:4588865-4588884 Msa0050650:CDS 50.0%
CAGTTGCTATCAATGCTGCG+TGG - chr1_2:4589034-4589053 Msa0050650:CDS 50.0%
CGTGCTTTGGCACAGATGTA+TGG + chr1_2:4589090-4589109 None:intergenic 50.0%
CATCTGTGCCAAAGCACGTT+TGG - chr1_2:4589092-4589111 Msa0050650:CDS 50.0%
GCCAAAGCACGTTTGGATCA+TGG - chr1_2:4589099-4589118 Msa0050650:CDS 50.0%
CCCATGATCCAAACGTGCTT+TGG + chr1_2:4589103-4589122 None:intergenic 50.0%
!!! CTAGTTGGTTTTGGCAGTGG+TGG - chr1_2:4589129-4589148 Msa0050650:CDS 50.0%
ATCCTTCCTCACCCCAATTC+TGG + chr1_2:4589212-4589231 None:intergenic 50.0%
TGCAGAGGCCGAAATGTATG+TGG - chr1_2:4589243-4589262 Msa0050650:CDS 50.0%
AGGCCGAAATGTATGTGGAG+TGG - chr1_2:4589248-4589267 Msa0050650:CDS 50.0%
AGATTGAGCTGCAGCAACAG+TGG + chr1_2:4589286-4589305 None:intergenic 50.0%
GAGTGCGATGAGGAAACGAT+GGG + chr1_2:4586907-4586926 None:intergenic 50.0%
AGAGTGCGATGAGGAAACGA+TGG + chr1_2:4586908-4586927 None:intergenic 50.0%
!! ATCGTCGGAGTTGGTGTCAT+CGG + chr1_2:4586970-4586989 None:intergenic 50.0%
GATGAGAAGATCGTCGGAGT+TGG + chr1_2:4586979-4586998 None:intergenic 50.0%
CTTGATCCTTCTGCGCAACA+CGG - chr1_2:4587161-4587180 Msa0050650:intron 50.0%
GAGTTCCGTCGTCAGTTTCT+TGG - chr1_2:4587215-4587234 Msa0050650:intron 50.0%
CGCGCCAATCAAAATCCTCT+GGG + chr1_2:4587307-4587326 None:intergenic 50.0%
TCGCGCCAATCAAAATCCTC+TGG + chr1_2:4587308-4587327 None:intergenic 50.0%
CACGCTCTGATGTCAACGTA+AGG - chr1_2:4588129-4588148 Msa0050650:intron 50.0%
ACCTGAGGTCAAAGATGGGT+TGG - chr1_2:4588376-4588395 Msa0050650:intron 50.0%
TCCAACCCATCTTTGACCTC+AGG + chr1_2:4588380-4588399 None:intergenic 50.0%
TGGGGGAGTAGTGTCAGAAA+AGG - chr1_2:4588726-4588745 Msa0050650:intron 50.0%
CTTGCAGGATCCATCTCTTC+CGG + chr1_2:4588764-4588783 None:intergenic 50.0%
GTAAAGAATGGCCCTCTTGC+AGG - chr1_2:4588865-4588884 Msa0050650:CDS 50.0%
CAGTTGCTATCAATGCTGCG+TGG - chr1_2:4589034-4589053 Msa0050650:CDS 50.0%
CGTGCTTTGGCACAGATGTA+TGG + chr1_2:4589090-4589109 None:intergenic 50.0%
CATCTGTGCCAAAGCACGTT+TGG - chr1_2:4589092-4589111 Msa0050650:CDS 50.0%
GCCAAAGCACGTTTGGATCA+TGG - chr1_2:4589099-4589118 Msa0050650:CDS 50.0%
CCCATGATCCAAACGTGCTT+TGG + chr1_2:4589103-4589122 None:intergenic 50.0%
!!! CTAGTTGGTTTTGGCAGTGG+TGG - chr1_2:4589129-4589148 Msa0050650:CDS 50.0%
ATCCTTCCTCACCCCAATTC+TGG + chr1_2:4589212-4589231 None:intergenic 50.0%
TGCAGAGGCCGAAATGTATG+TGG - chr1_2:4589243-4589262 Msa0050650:CDS 50.0%
AGGCCGAAATGTATGTGGAG+TGG - chr1_2:4589248-4589267 Msa0050650:CDS 50.0%
AGATTGAGCTGCAGCAACAG+TGG + chr1_2:4589286-4589305 None:intergenic 50.0%
! CGAAGAGGAAGAGTGCGATG+AGG + chr1_2:4586917-4586936 None:intergenic 55.0%
GTCATCGGAGAGGGTTTGTG+CGG + chr1_2:4586955-4586974 None:intergenic 55.0%
!! GGAGTTGGTGTCATCGGAGA+GGG + chr1_2:4586964-4586983 None:intergenic 55.0%
GCGCAGAAGGATCAAGCTTC+TGG + chr1_2:4587157-4587176 None:intergenic 55.0%
GTGATTCCGTGTTGCGCAGA+AGG + chr1_2:4587170-4587189 None:intergenic 55.0%
TCTGAGCGTGAGCCGGTAAA+CGG + chr1_2:4587256-4587275 None:intergenic 55.0%
!! TTTACCGGCTCACGCTCAGA+AGG - chr1_2:4587256-4587275 Msa0050650:intron 55.0%
CTGATCCTTGACGGGAGTGA+CGG + chr1_2:4587339-4587358 None:intergenic 55.0%
AGGGTTCATGCGGTTCGTGT+TGG - chr1_2:4587482-4587501 Msa0050650:CDS 55.0%
GGGTTCATGCGGTTCGTGTT+GGG - chr1_2:4587483-4587502 Msa0050650:CDS 55.0%
GGGAGTGAGCACTTTAGGCA+TGG + chr1_2:4588226-4588245 None:intergenic 55.0%
TGTGACTCTGGCTGTAACGG+TGG - chr1_2:4588667-4588686 Msa0050650:CDS 55.0%
TGCAGCAACAGTGGAGACCA+TGG + chr1_2:4589277-4589296 None:intergenic 55.0%
! CGAAGAGGAAGAGTGCGATG+AGG + chr1_2:4586917-4586936 None:intergenic 55.0%
GTCATCGGAGAGGGTTTGTG+CGG + chr1_2:4586955-4586974 None:intergenic 55.0%
!! GGAGTTGGTGTCATCGGAGA+GGG + chr1_2:4586964-4586983 None:intergenic 55.0%
GCGCAGAAGGATCAAGCTTC+TGG + chr1_2:4587157-4587176 None:intergenic 55.0%
GTGATTCCGTGTTGCGCAGA+AGG + chr1_2:4587170-4587189 None:intergenic 55.0%
TCTGAGCGTGAGCCGGTAAA+CGG + chr1_2:4587256-4587275 None:intergenic 55.0%
!! TTTACCGGCTCACGCTCAGA+AGG - chr1_2:4587256-4587275 Msa0050650:intron 55.0%
CTGATCCTTGACGGGAGTGA+CGG + chr1_2:4587339-4587358 None:intergenic 55.0%
AGGGTTCATGCGGTTCGTGT+TGG - chr1_2:4587482-4587501 Msa0050650:CDS 55.0%
GGGTTCATGCGGTTCGTGTT+GGG - chr1_2:4587483-4587502 Msa0050650:CDS 55.0%
GGGAGTGAGCACTTTAGGCA+TGG + chr1_2:4588226-4588245 None:intergenic 55.0%
TGTGACTCTGGCTGTAACGG+TGG - chr1_2:4588667-4588686 Msa0050650:CDS 55.0%
TGCAGCAACAGTGGAGACCA+TGG + chr1_2:4589277-4589296 None:intergenic 55.0%
TTGTGCGGCGGTTGCAACAG+CGG + chr1_2:4586940-4586959 None:intergenic 60.0%
ATCGGAGAGGGTTTGTGCGG+CGG + chr1_2:4586952-4586971 None:intergenic 60.0%
!! CGGAGTTGGTGTCATCGGAG+AGG + chr1_2:4586965-4586984 None:intergenic 60.0%
!! CAGCGGTGTCGACGACTTGT+CGG + chr1_2:4587001-4587020 None:intergenic 60.0%
CGTCACTCCCGTCAAGGATC+AGG - chr1_2:4587337-4587356 Msa0050650:CDS 60.0%
CTGACACTACTCCCCCAGAC+TGG + chr1_2:4588723-4588742 None:intergenic 60.0%
ATGGGGCCAGAATTGGGGTG+AGG - chr1_2:4589203-4589222 Msa0050650:CDS 60.0%
GGCCAGAATTGGGGTGAGGA+AGG - chr1_2:4589207-4589226 Msa0050650:CDS 60.0%
TTGTGCGGCGGTTGCAACAG+CGG + chr1_2:4586940-4586959 None:intergenic 60.0%
ATCGGAGAGGGTTTGTGCGG+CGG + chr1_2:4586952-4586971 None:intergenic 60.0%
!! CGGAGTTGGTGTCATCGGAG+AGG + chr1_2:4586965-4586984 None:intergenic 60.0%
!! CAGCGGTGTCGACGACTTGT+CGG + chr1_2:4587001-4587020 None:intergenic 60.0%
CGTCACTCCCGTCAAGGATC+AGG - chr1_2:4587337-4587356 Msa0050650:CDS 60.0%
CTGACACTACTCCCCCAGAC+TGG + chr1_2:4588723-4588742 None:intergenic 60.0%
ATGGGGCCAGAATTGGGGTG+AGG - chr1_2:4589203-4589222 Msa0050650:CDS 60.0%
GGCCAGAATTGGGGTGAGGA+AGG - chr1_2:4589207-4589226 Msa0050650:CDS 60.0%
CGGTTGCAACAGCGGCGAAG+AGG + chr1_2:4586932-4586951 None:intergenic 65.0%
GGAGCCTTCTGAGCGTGAGC+CGG + chr1_2:4587263-4587282 None:intergenic 65.0%
! AGGTGCCGTCACTCCCGTCA+AGG - chr1_2:4587331-4587350 Msa0050650:CDS 65.0%
CGGTTGCAACAGCGGCGAAG+AGG + chr1_2:4586932-4586951 None:intergenic 65.0%
GGAGCCTTCTGAGCGTGAGC+CGG + chr1_2:4587263-4587282 None:intergenic 65.0%
! AGGTGCCGTCACTCCCGTCA+AGG - chr1_2:4587331-4587350 Msa0050650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4586900 4589308 4586900 ID=Msa0050650;Name=Msa0050650
chr1_2 mRNA 4586900 4589308 4586900 ID=Msa0050650-mRNA-1;Parent=Msa0050650;Name=Msa0050650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|364
chr1_2 exon 4588850 4589308 4588850 ID=Msa0050650-mRNA-1:exon:1218;Parent=Msa0050650-mRNA-1
chr1_2 exon 4588605 4588724 4588605 ID=Msa0050650-mRNA-1:exon:1217;Parent=Msa0050650-mRNA-1
chr1_2 exon 4587322 4587565 4587322 ID=Msa0050650-mRNA-1:exon:1216;Parent=Msa0050650-mRNA-1
chr1_2 exon 4586900 4587171 4586900 ID=Msa0050650-mRNA-1:exon:1215;Parent=Msa0050650-mRNA-1
chr1_2 CDS 4588850 4589308 4588850 ID=Msa0050650-mRNA-1:cds;Parent=Msa0050650-mRNA-1
chr1_2 CDS 4588605 4588724 4588605 ID=Msa0050650-mRNA-1:cds;Parent=Msa0050650-mRNA-1
chr1_2 CDS 4587322 4587565 4587322 ID=Msa0050650-mRNA-1:cds;Parent=Msa0050650-mRNA-1
chr1_2 CDS 4586900 4587171 4586900 ID=Msa0050650-mRNA-1:cds;Parent=Msa0050650-mRNA-1
Gene Sequence

>Msa0050650

ATGGCCCATCGTTTCCTCATCGCACTCTTCCTCTTCGCCGCTGTTGCAACCGCCGCACAAACCCTCTCCGATGACACCAACTCCGACGATCTTCTCATCCGACAAGTCGTCGACACCGCTGAAGATCACATACTAAACGCAGAGCATCACTTCACAACGTTCAAGTCAAAGTTCAGCAAAAACTACGCAACAAAAGAAGAACATGATTACCGATTTGGCGTGTTCAAATCAAATCTCATCAAAGCGAAGCTTCACCAGAAGCTTGATCCTTCTGCGCAACACGGAATCACTAAATTTTCCGATTTAACGGCGTCTGAGTTCCGTCGTCAGTTTCTTGGACTGAACAAACGTCTCCGTTTACCGGCTCACGCTCAGAAGGCTCCGATTCTTCCTACTAACAATCTCCCAGAGGATTTTGATTGGCGCGAGAAAGGTGCCGTCACTCCCGTCAAGGATCAGGGTTCATGCGGTTCGTGTTGGGCTTTTAGTACAACTGGAGCTTTGGAAGGAGCAAATTATTTGGCGACTGGGAAGCTAGTGAGTCTTAGTGAGCAACAGCTTGTGGATTGTGATCATGTGTGTGATCCAGAGGAACGTAATTCTTGTGACTCTGGCTGTAACGGTGGATTGATGAACAACGCGTTCGAATACATACTCCAGTCTGGGGGAGTAGTGTCAGAAAAGGACTATGCTTACACCGGAAGAGATGGATCCTGCAAGTTTGACAAAAGCAAGATTGTAGCTTCCGTATCTAACTTCAGTGTCGTTTCTCTAGACGAAGACCAAATTGCTGCAAATCTAGTAAAGAATGGCCCTCTTGCAGTTGCTATCAATGCTGCGTGGATGCAGACATATATGAGTGGTGTCTCATGCCCATACATCTGTGCCAAAGCACGTTTGGATCATGGGGTTCTTCTAGTTGGTTTTGGCAGTGGTGGCTATGCTCCCATTCGATTGAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGCCAGAATTGGGGTGAGGAAGGATATTATAAGATCTGCAGAGGCCGAAATGTATGTGGAGTGGATTCCATGGTCTCCACTGTTGCTGCAGCTCAATCTTGA

Protein sequence

>Msa0050650

MAHRFLIALFLFAAVATAAQTLSDDTNSDDLLIRQVVDTAEDHILNAEHHFTTFKSKFSKNYATKEEHDYRFGVFKSNLIKAKLHQKLDPSAQHGITKFSDLTASEFRRQFLGLNKRLRLPAHAQKAPILPTNNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGANYLATGKLVSLSEQQLVDCDHVCDPEERNSCDSGCNGGLMNNAFEYILQSGGVVSEKDYAYTGRDGSCKFDKSKIVASVSNFSVVSLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYICAKARLDHGVLLVGFGSGGYAPIRLKEKPYWIIKNSWGQNWGEEGYYKICRGRNVCGVDSMVSTVAAAQS*