Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050690 | XP_003589348.2 | 98.077 | 364 | 7 | 0 | 1 | 364 | 1 | 364 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050690 | sp|P25804|CYSP_PEA | 90.110 | 364 | 33 | 1 | 1 | 364 | 1 | 361 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050690 | A0A396JH07 | 98.077 | 364 | 7 | 0 | 1 | 364 | 1 | 364 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003090 | Msa0050690 | 0.956642 | 1.821400e-114 | -8.615850e-47 |
| Msa0050650 | Msa0050690 | 0.998792 | 8.543557e-277 | -8.615850e-47 |
| Msa0050690 | Msa0050800 | 0.968874 | 2.661082e-129 | -8.615850e-47 |
| Msa0050690 | Msa0146680 | 0.971653 | 1.669127e-133 | -8.615850e-47 |
| Msa0050690 | Msa0882370 | -0.821036 | 4.997594e-53 | -8.615850e-47 |
| Msa0050690 | Msa0947430 | -0.837616 | 4.680250e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050690 | MtrunA17_Chr1g0155781 | 98.077 | 364 | 7 | 0 | 1 | 364 | 1 | 364 | 0.0 | 751 |
| Msa0050690 | MtrunA17_Chr4g0035551 | 71.196 | 368 | 94 | 6 | 1 | 364 | 1 | 360 | 0.0 | 539 |
| Msa0050690 | MtrunA17_Chr1g0199131 | 53.571 | 364 | 155 | 4 | 7 | 364 | 15 | 370 | 5.66e-145 | 415 |
| Msa0050690 | MtrunA17_Chr4g0036731 | 59.218 | 358 | 99 | 8 | 8 | 364 | 13 | 324 | 2.19e-142 | 407 |
| Msa0050690 | MtrunA17_Chr4g0037291 | 57.143 | 357 | 112 | 7 | 8 | 364 | 54 | 369 | 3.18e-138 | 398 |
| Msa0050690 | MtrunA17_Chr4g0036281 | 56.098 | 369 | 116 | 9 | 1 | 364 | 1 | 328 | 4.20e-138 | 396 |
| Msa0050690 | MtrunA17_Chr1g0208261 | 42.006 | 319 | 157 | 9 | 38 | 345 | 74 | 375 | 5.69e-69 | 225 |
| Msa0050690 | MtrunA17_Chr4g0070441 | 38.567 | 363 | 189 | 11 | 9 | 359 | 7 | 347 | 1.66e-66 | 214 |
| Msa0050690 | MtrunA17_Chr0c27g0493921 | 39.045 | 356 | 183 | 11 | 9 | 352 | 7 | 340 | 7.68e-66 | 212 |
| Msa0050690 | MtrunA17_Chr4g0040851 | 37.864 | 309 | 167 | 8 | 51 | 352 | 61 | 351 | 8.73e-66 | 212 |
| Msa0050690 | MtrunA17_Chr4g0041061 | 37.097 | 372 | 172 | 14 | 1 | 352 | 7 | 336 | 1.61e-65 | 211 |
| Msa0050690 | MtrunA17_Chr4g0040881 | 37.640 | 356 | 163 | 13 | 14 | 352 | 23 | 336 | 7.87e-65 | 209 |
| Msa0050690 | MtrunA17_Chr5g0405751 | 38.053 | 339 | 165 | 11 | 33 | 352 | 23 | 335 | 1.28e-64 | 209 |
| Msa0050690 | MtrunA17_Chr4g0053311 | 40.134 | 299 | 151 | 8 | 57 | 345 | 41 | 321 | 1.44e-64 | 209 |
| Msa0050690 | MtrunA17_Chr3g0144281 | 39.048 | 315 | 167 | 8 | 51 | 357 | 47 | 344 | 1.55e-64 | 209 |
| Msa0050690 | MtrunA17_Chr4g0060251 | 40.000 | 315 | 148 | 11 | 56 | 352 | 45 | 336 | 2.59e-64 | 208 |
| Msa0050690 | MtrunA17_Chr3g0134231 | 37.037 | 351 | 189 | 10 | 5 | 345 | 13 | 341 | 4.00e-64 | 211 |
| Msa0050690 | MtrunA17_Chr4g0024411 | 39.048 | 315 | 151 | 11 | 56 | 352 | 43 | 334 | 6.02e-64 | 207 |
| Msa0050690 | MtrunA17_Chr3g0116551 | 40.268 | 298 | 150 | 9 | 67 | 352 | 55 | 336 | 2.63e-63 | 206 |
| Msa0050690 | MtrunA17_Chr4g0041081 | 38.024 | 334 | 165 | 12 | 41 | 357 | 33 | 341 | 1.16e-62 | 204 |
| Msa0050690 | MtrunA17_Chr4g0041521 | 39.474 | 304 | 160 | 8 | 56 | 352 | 45 | 331 | 1.16e-62 | 203 |
| Msa0050690 | MtrunA17_Chr4g0041481 | 37.931 | 319 | 166 | 9 | 45 | 352 | 34 | 331 | 5.49e-62 | 202 |
| Msa0050690 | MtrunA17_Chr2g0325121 | 37.248 | 298 | 165 | 7 | 51 | 345 | 39 | 317 | 4.14e-60 | 197 |
| Msa0050690 | MtrunA17_Chr4g0058081 | 39.000 | 300 | 152 | 11 | 66 | 352 | 54 | 335 | 1.24e-59 | 196 |
| Msa0050690 | MtrunA17_Chr3g0142071 | 37.383 | 321 | 169 | 10 | 51 | 357 | 50 | 352 | 3.24e-59 | 198 |
| Msa0050690 | MtrunA17_Chr2g0283901 | 37.072 | 321 | 169 | 11 | 51 | 357 | 51 | 352 | 6.56e-59 | 198 |
| Msa0050690 | MtrunA17_Chr2g0315491 | 39.739 | 307 | 149 | 10 | 60 | 352 | 48 | 332 | 9.54e-59 | 193 |
| Msa0050690 | MtrunA17_Chr8g0379151 | 36.137 | 321 | 171 | 12 | 51 | 356 | 67 | 368 | 5.24e-58 | 192 |
| Msa0050690 | MtrunA17_Chr4g0041471 | 35.831 | 307 | 172 | 8 | 56 | 352 | 42 | 333 | 4.02e-57 | 189 |
| Msa0050690 | MtrunA17_Chr1g0153011 | 36.571 | 350 | 165 | 12 | 5 | 345 | 21 | 322 | 4.42e-56 | 189 |
| Msa0050690 | MtrunA17_Chr2g0319991 | 36.747 | 332 | 171 | 14 | 44 | 358 | 31 | 340 | 1.19e-54 | 183 |
| Msa0050690 | MtrunA17_Chr2g0283671 | 45.455 | 220 | 100 | 8 | 128 | 345 | 7 | 208 | 5.79e-52 | 172 |
| Msa0050690 | MtrunA17_Chr2g0283741 | 32.919 | 322 | 176 | 11 | 51 | 354 | 53 | 352 | 2.38e-49 | 170 |
| Msa0050690 | MtrunA17_Chr7g0248811 | 32.492 | 317 | 189 | 8 | 42 | 352 | 30 | 327 | 3.32e-47 | 163 |
| Msa0050690 | MtrunA17_Chr8g0379671 | 56.296 | 135 | 45 | 2 | 176 | 310 | 23 | 143 | 1.08e-46 | 156 |
| Msa0050690 | MtrunA17_Chr2g0311381 | 31.510 | 384 | 201 | 17 | 1 | 359 | 1 | 347 | 2.30e-45 | 159 |
| Msa0050690 | MtrunA17_Chr7g0248391 | 31.481 | 324 | 194 | 9 | 36 | 352 | 27 | 329 | 5.10e-45 | 157 |
| Msa0050690 | MtrunA17_Chr2g0311471 | 31.746 | 378 | 201 | 13 | 1 | 357 | 1 | 342 | 7.00e-44 | 155 |
| Msa0050690 | MtrunA17_Chr1g0156161 | 37.838 | 222 | 118 | 6 | 133 | 351 | 47 | 251 | 6.85e-36 | 131 |
| Msa0050690 | MtrunA17_Chr2g0311391 | 28.378 | 370 | 188 | 14 | 39 | 357 | 24 | 367 | 9.27e-35 | 131 |
| Msa0050690 | MtrunA17_Chr2g0283751 | 34.199 | 231 | 123 | 7 | 62 | 279 | 64 | 278 | 1.94e-33 | 125 |
| Msa0050690 | MtrunA17_Chr7g0271031 | 26.632 | 383 | 226 | 14 | 7 | 357 | 20 | 379 | 3.06e-28 | 114 |
| Msa0050690 | MtrunA17_Chr7g0271041 | 27.157 | 313 | 183 | 11 | 75 | 357 | 38 | 335 | 2.39e-25 | 105 |
| Msa0050690 | MtrunA17_Chr1g0156771 | 46.018 | 113 | 49 | 3 | 133 | 242 | 53 | 156 | 2.22e-22 | 92.4 |
| Msa0050690 | MtrunA17_Chr2g0311091 | 36.806 | 144 | 75 | 4 | 58 | 185 | 41 | 184 | 1.75e-19 | 85.1 |
| Msa0050690 | MtrunA17_Chr7g0248421 | 34.416 | 154 | 89 | 4 | 159 | 311 | 57 | 199 | 3.29e-19 | 85.1 |
| Msa0050690 | MtrunA17_Chr2g0283661 | 30.000 | 170 | 95 | 4 | 5 | 170 | 7 | 156 | 1.09e-17 | 82.0 |
| Msa0050690 | MtrunA17_Chr2g0283661 | 34.513 | 113 | 58 | 5 | 253 | 361 | 168 | 268 | 1.75e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050690 | AT4G39090.1 | 73.977 | 342 | 87 | 2 | 24 | 364 | 24 | 364 | 0.0 | 547 |
| Msa0050690 | AT2G21430.1 | 70.308 | 357 | 96 | 3 | 9 | 364 | 14 | 361 | 0.0 | 540 |
| Msa0050690 | AT4G16190.1 | 69.505 | 364 | 106 | 5 | 5 | 364 | 8 | 370 | 2.79e-178 | 499 |
| Msa0050690 | AT3G54940.2 | 56.232 | 345 | 140 | 3 | 29 | 364 | 24 | 366 | 5.74e-150 | 427 |
| Msa0050690 | AT3G54940.3 | 53.725 | 255 | 107 | 3 | 29 | 274 | 24 | 276 | 3.98e-99 | 295 |
| Msa0050690 | AT1G06260.1 | 41.745 | 321 | 155 | 12 | 48 | 357 | 40 | 339 | 1.98e-71 | 226 |
| Msa0050690 | AT5G60360.1 | 40.909 | 330 | 168 | 8 | 37 | 357 | 42 | 353 | 1.37e-70 | 225 |
| Msa0050690 | AT5G60360.3 | 41.358 | 324 | 163 | 8 | 37 | 351 | 42 | 347 | 1.18e-69 | 223 |
| Msa0050690 | AT3G45310.1 | 38.936 | 357 | 188 | 10 | 7 | 352 | 11 | 348 | 2.10e-69 | 222 |
| Msa0050690 | AT3G19390.1 | 42.581 | 310 | 147 | 11 | 60 | 357 | 52 | 342 | 2.37e-69 | 224 |
| Msa0050690 | AT5G60360.2 | 41.176 | 323 | 163 | 8 | 37 | 350 | 42 | 346 | 3.28e-69 | 221 |
| Msa0050690 | AT3G45310.2 | 38.592 | 355 | 188 | 10 | 7 | 350 | 11 | 346 | 5.30e-68 | 218 |
| Msa0050690 | AT4G36880.1 | 41.980 | 293 | 136 | 9 | 67 | 345 | 69 | 341 | 1.32e-67 | 218 |
| Msa0050690 | AT1G47128.1 | 41.924 | 291 | 132 | 8 | 67 | 345 | 68 | 333 | 2.82e-67 | 219 |
| Msa0050690 | AT4G35350.1 | 38.643 | 339 | 169 | 10 | 36 | 357 | 33 | 349 | 3.17e-67 | 216 |
| Msa0050690 | AT3G19400.1 | 40.777 | 309 | 156 | 10 | 60 | 357 | 53 | 345 | 7.35e-67 | 215 |
| Msa0050690 | AT5G43060.1 | 41.837 | 294 | 150 | 7 | 55 | 345 | 59 | 334 | 4.14e-66 | 216 |
| Msa0050690 | AT1G20850.1 | 40.566 | 318 | 160 | 9 | 51 | 357 | 51 | 350 | 2.19e-65 | 211 |
| Msa0050690 | AT3G43960.1 | 42.662 | 293 | 146 | 9 | 60 | 345 | 50 | 327 | 8.35e-65 | 210 |
| Msa0050690 | AT5G50260.1 | 41.806 | 299 | 146 | 9 | 66 | 352 | 52 | 334 | 1.24e-63 | 207 |
| Msa0050690 | AT1G09850.1 | 39.117 | 317 | 165 | 9 | 51 | 357 | 32 | 330 | 3.08e-63 | 208 |
| Msa0050690 | AT3G48340.1 | 38.318 | 321 | 162 | 9 | 41 | 345 | 24 | 324 | 7.02e-63 | 205 |
| Msa0050690 | AT4G23520.1 | 38.199 | 322 | 170 | 10 | 47 | 357 | 43 | 346 | 5.04e-62 | 202 |
| Msa0050690 | AT5G45890.1 | 35.890 | 365 | 182 | 14 | 7 | 352 | 6 | 337 | 1.13e-60 | 199 |
| Msa0050690 | AT1G29090.1 | 37.812 | 320 | 168 | 11 | 47 | 352 | 44 | 346 | 2.17e-59 | 196 |
| Msa0050690 | AT2G34080.1 | 36.102 | 313 | 168 | 10 | 54 | 352 | 42 | 336 | 7.18e-55 | 184 |
| Msa0050690 | AT3G48350.1 | 38.676 | 287 | 147 | 10 | 71 | 346 | 57 | 325 | 9.88e-54 | 181 |
| Msa0050690 | AT4G35350.2 | 39.526 | 253 | 135 | 5 | 36 | 280 | 33 | 275 | 1.56e-53 | 179 |
| Msa0050690 | AT2G27420.1 | 34.043 | 329 | 156 | 12 | 56 | 352 | 40 | 339 | 1.34e-50 | 172 |
| Msa0050690 | AT3G19400.2 | 40.708 | 226 | 122 | 5 | 60 | 280 | 53 | 271 | 2.20e-50 | 170 |
| Msa0050690 | AT4G11310.1 | 31.148 | 366 | 209 | 10 | 2 | 352 | 7 | 344 | 4.58e-50 | 172 |
| Msa0050690 | AT3G49340.1 | 32.381 | 315 | 183 | 9 | 54 | 355 | 38 | 335 | 1.28e-48 | 167 |
| Msa0050690 | AT1G29080.1 | 35.604 | 323 | 169 | 12 | 57 | 361 | 45 | 346 | 1.34e-48 | 167 |
| Msa0050690 | AT4G11320.2 | 31.351 | 370 | 203 | 12 | 5 | 352 | 11 | 351 | 2.17e-48 | 167 |
| Msa0050690 | AT4G11320.1 | 31.351 | 370 | 203 | 12 | 5 | 352 | 11 | 351 | 2.17e-48 | 167 |
| Msa0050690 | AT3G48350.2 | 38.356 | 219 | 116 | 6 | 71 | 280 | 57 | 265 | 1.82e-39 | 142 |
| Msa0050690 | AT1G29110.1 | 31.014 | 345 | 184 | 15 | 28 | 352 | 15 | 325 | 1.37e-36 | 135 |
| Msa0050690 | AT4G01610.1 | 29.688 | 320 | 173 | 15 | 64 | 353 | 34 | 331 | 3.55e-24 | 102 |
| Msa0050690 | AT4G01610.2 | 29.063 | 320 | 175 | 15 | 64 | 353 | 34 | 331 | 3.77e-22 | 96.7 |
| Msa0050690 | AT1G02305.1 | 30.208 | 288 | 153 | 12 | 98 | 356 | 69 | 337 | 6.61e-22 | 95.9 |
| Msa0050690 | AT1G02300.1 | 26.710 | 307 | 159 | 13 | 98 | 356 | 66 | 354 | 4.73e-17 | 82.0 |
Find 94 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCCGTCGTCAGTTTCT+TGG | 0.223807 | 1_2:-4692230 | Msa0050690:CDS |
| TTTGGAAGGAGCAAATTATT+TGG | 0.286718 | 1_2:-4691920 | Msa0050690:CDS |
| GATTGAAGGAAAAGCCTTAC+TGG | 0.291151 | 1_2:-4690283 | Msa0050690:CDS |
| ATCCTTCCTCACCCCAATTC+TGG | 0.294023 | 1_2:+4690240 | None:intergenic |
| AGAATTCATGGGGCCAGAAT+TGG | 0.303276 | 1_2:-4690253 | Msa0050690:CDS |
| GAAGAACATGATTACCGATT+TGG | 0.310705 | 1_2:-4692350 | Msa0050690:CDS |
| GTAAAGAATGGCCCTCTTGC+AGG | 0.324125 | 1_2:-4690584 | Msa0050690:intron |
| GAACAAACGTCTCCGTTTAC+CGG | 0.333947 | 1_2:-4692204 | Msa0050690:CDS |
| TTACTAGATTTGCAGCAATT+TGG | 0.338194 | 1_2:+4690603 | None:intergenic |
| GATCATGGGGTTCTTCTAGT+TGG | 0.348875 | 1_2:-4690335 | Msa0050690:CDS |
| GGGGTTCTTCTAGTTGGTTT+TGG | 0.352074 | 1_2:-4690329 | Msa0050690:CDS |
| GAATTCATGGGGCCAGAATT+GGG | 0.378415 | 1_2:-4690252 | Msa0050690:CDS |
| GCGCAGAAGGATCAAGCTTC+TGG | 0.386901 | 1_2:+4692291 | None:intergenic |
| GAACTCAGACGCCGTTAAAT+CGG | 0.390963 | 1_2:+4692247 | None:intergenic |
| CATCTGTGCCAAAGCACGTT+TGG | 0.391375 | 1_2:-4690357 | Msa0050690:CDS |
| ACTGGATCATAAAGAATTCA+TGG | 0.401274 | 1_2:-4690265 | Msa0050690:CDS |
| TTCGAATACATACTCCAGTC+TGG | 0.403345 | 1_2:-4690743 | Msa0050690:CDS |
| CGTGCTTTGGCACAGATGTA+TGG | 0.406234 | 1_2:+4690362 | None:intergenic |
| CCCATGATCCAAACGTGCTT+TGG | 0.406480 | 1_2:+4690349 | None:intergenic |
| GGGTTCATGCGGTTCGTGTT+GGG | 0.409026 | 1_2:-4691962 | Msa0050690:CDS |
| CTTGCAGGATCCATCTCTTC+CGG | 0.413354 | 1_2:+4690688 | None:intergenic |
| AGGGTTCATGCGGTTCGTGT+TGG | 0.415010 | 1_2:-4691963 | Msa0050690:CDS |
| TCGCGCCAATCAAAATCCTC+TGG | 0.420389 | 1_2:+4692140 | None:intergenic |
| CCAAAGCACGTTTGGATCAT+GGG | 0.425598 | 1_2:-4690349 | Msa0050690:CDS |
| CTATGCTCCCATTCGATTGA+AGG | 0.426934 | 1_2:-4690297 | Msa0050690:CDS |
| AATCCACTCCACATACATTT+CGG | 0.439462 | 1_2:+4690198 | None:intergenic |
| CGTCACTCCCGTCAAGGATC+AGG | 0.443966 | 1_2:-4692108 | Msa0050690:intron |
| GCCAAAGCACGTTTGGATCA+TGG | 0.451166 | 1_2:-4690350 | Msa0050690:CDS |
| GAATTCTTTATGATCCAGTA+AGG | 0.473251 | 1_2:+4690269 | None:intergenic |
| TCTGAGCGTGAGCCGGTAAA+CGG | 0.474751 | 1_2:+4692192 | None:intergenic |
| GGAGCAAATTATTTGGCGAC+TGG | 0.478944 | 1_2:-4691913 | Msa0050690:CDS |
| TTGATTTGAACACGCCAAAT+CGG | 0.479498 | 1_2:+4692336 | None:intergenic |
| AACAATTAGCTACCTGCAAG+AGG | 0.483963 | 1_2:+4690572 | None:intergenic |
| GTGATTCCGTGTTGCGCAGA+AGG | 0.484794 | 1_2:+4692278 | None:intergenic |
| CAGCGGTGTCGACGACTTGT+CGG | 0.487131 | 1_2:+4692447 | None:intergenic |
| TCACAAGAATTACGTTCCTC+TGG | 0.490836 | 1_2:+4690800 | None:intergenic |
| CGCGCCAATCAAAATCCTCT+GGG | 0.504763 | 1_2:+4692141 | None:intergenic |
| CTGGATCATAAAGAATTCAT+GGG | 0.512632 | 1_2:-4690264 | Msa0050690:CDS |
| ATCGTCGGAGTTGGTGTCAT+CGG | 0.513790 | 1_2:+4692478 | None:intergenic |
| GCTGCAAATCTAGTAAAGAA+TGG | 0.519363 | 1_2:-4690596 | Msa0050690:CDS |
| GATGAGAAGATCGTCGGAGT+TGG | 0.521387 | 1_2:+4692469 | None:intergenic |
| TCTTAGTGAGCAACAGCTTG+TGG | 0.523786 | 1_2:-4691878 | Msa0050690:CDS |
| TCGAATACATACTCCAGTCT+GGG | 0.524172 | 1_2:-4690742 | Msa0050690:CDS |
| GATACATGCCTGATCCTTGA+CGG | 0.527318 | 1_2:+4692100 | None:intergenic |
| TTGTGCGGCGGTTGCAACAG+CGG | 0.528593 | 1_2:+4692508 | None:intergenic |
| GGAGTTGGTGTCATCGGAGA+GGG | 0.533186 | 1_2:+4692484 | None:intergenic |
| GAACGTAATTCTTGTGACTC+TGG | 0.537907 | 1_2:-4690794 | Msa0050690:CDS |
| AGATTGTTAGTAGGAAGAAT+CGG | 0.540576 | 1_2:+4692164 | None:intergenic |
| ATCGGAGAGGGTTTGTGCGG+CGG | 0.540988 | 1_2:+4692496 | None:intergenic |
| TATGCTTACACCGGAAGAGA+TGG | 0.544908 | 1_2:-4690698 | Msa0050690:CDS |
| GTGCTTTGGCACAGATGTAT+GGG | 0.545478 | 1_2:+4690363 | None:intergenic |
| GGCCAGAATTGGGGTGAGGA+AGG | 0.548238 | 1_2:-4690242 | Msa0050690:CDS |
| TGTGACTCTGGCTGTAACGG+TGG | 0.548240 | 1_2:-4690782 | Msa0050690:CDS |
| GGAGCCTTCTGAGCGTGAGC+CGG | 0.555112 | 1_2:+4692185 | None:intergenic |
| AGTACAACTGGAGCTTTGGA+AGG | 0.555301 | 1_2:-4691934 | Msa0050690:CDS |
| TCCTCTGGGAGATTGTTAGT+AGG | 0.556352 | 1_2:+4692155 | None:intergenic |
| TCTTGTGACTCTGGCTGTAA+CGG | 0.557182 | 1_2:-4690785 | Msa0050690:CDS |
| TGCAGAGGCCGAAATGTATG+TGG | 0.559622 | 1_2:-4690206 | Msa0050690:CDS |
| CGGTTGCAACAGCGGCGAAG+AGG | 0.560629 | 1_2:+4692516 | None:intergenic |
| AACGACACTGAAGTTAGATA+CGG | 0.563918 | 1_2:+4690640 | None:intergenic |
| AATTCATGGGGCCAGAATTG+GGG | 0.569604 | 1_2:-4690251 | Msa0050690:CDS |
| TTTACCGGCTCACGCTCAGA+AGG | 0.571687 | 1_2:-4692189 | Msa0050690:CDS |
| ATACATGCCTGATCCTTGAC+GGG | 0.580358 | 1_2:+4692101 | None:intergenic |
| GAGCAAATTATTTGGCGACT+GGG | 0.581395 | 1_2:-4691912 | Msa0050690:CDS |
| ATGGGGCCAGAATTGGGGTG+AGG | 0.585321 | 1_2:-4690246 | Msa0050690:CDS |
| CTGATCCTTGACGGGAGTGA+CGG | 0.594529 | 1_2:+4692109 | None:intergenic |
| AGATTGAGCTGCAGCAACAG+TGG | 0.595282 | 1_2:+4690166 | None:intergenic |
| TGGTGTGATTAGGGTTCATG+CGG | 0.605339 | 1_2:-4691973 | Msa0050690:intron |
| CTTGATCCTTCTGCGCAACA+CGG | 0.608322 | 1_2:-4692284 | Msa0050690:CDS |
| AGGTGCCGTCACTCCCGTCA+AGG | 0.610158 | 1_2:-4692114 | Msa0050690:CDS |
| GAGTGCGATGAGGAAACGAT+GGG | 0.610185 | 1_2:+4692541 | None:intergenic |
| AGAGTGCGATGAGGAAACGA+TGG | 0.615222 | 1_2:+4692540 | None:intergenic |
| CAAAGCACGTTTGGATCATG+GGG | 0.618631 | 1_2:-4690348 | Msa0050690:CDS |
| AGGCCGAAATGTATGTGGAG+TGG | 0.625354 | 1_2:-4690201 | Msa0050690:CDS |
| TTGTCGGATGAGAAGATCGT+CGG | 0.630035 | 1_2:+4692463 | None:intergenic |
| GATGAGGAAACGATGGGCCA+TGG | 0.632658 | 1_2:+4692547 | None:intergenic |
| CGAATACATACTCCAGTCTG+GGG | 0.633443 | 1_2:-4690741 | Msa0050690:CDS |
| GTTTAGTATGTGATCTTCAG+CGG | 0.633912 | 1_2:+4692430 | None:intergenic |
| TGCAGCAACAGTGGAGACCA+TGG | 0.639409 | 1_2:+4690175 | None:intergenic |
| GGATATTATAAGATCTGCAG+AGG | 0.643121 | 1_2:-4690221 | Msa0050690:CDS |
| AATCTTGCAGTGTGATCCAG+AGG | 0.643554 | 1_2:-4690816 | Msa0050690:intron |
| GTCATCGGAGAGGGTTTGTG+CGG | 0.646567 | 1_2:+4692493 | None:intergenic |
| CGGAGTTGGTGTCATCGGAG+AGG | 0.647919 | 1_2:+4692483 | None:intergenic |
| TGTATGTGGAGTGGATTCCA+TGG | 0.649722 | 1_2:-4690192 | Msa0050690:CDS |
| ACAATTAGCTACCTGCAAGA+GGG | 0.660807 | 1_2:+4690573 | None:intergenic |
| GCTTGTGGATTGTGATCATG+TGG | 0.675150 | 1_2:-4691863 | Msa0050690:intron |
| GAAAAGGACTATGCTTACAC+CGG | 0.677300 | 1_2:-4690707 | Msa0050690:CDS |
| CGAAGAGGAAGAGTGCGATG+AGG | 0.679065 | 1_2:+4692531 | None:intergenic |
| TCCTACTAACAATCTCCCAG+AGG | 0.684912 | 1_2:-4692156 | Msa0050690:CDS |
| TGGATCATAAAGAATTCATG+GGG | 0.698117 | 1_2:-4690263 | Msa0050690:CDS |
| GAATACATACTCCAGTCTGG+GGG | 0.711512 | 1_2:-4690740 | Msa0050690:CDS |
| CAGTTGCTATCAATGCTGCG+TGG | 0.724510 | 1_2:-4690415 | Msa0050690:CDS |
| TGGATGCAGACATATATGAG+TGG | 0.766052 | 1_2:-4690395 | Msa0050690:CDS |
| TCAGTCCAAGAAACTGACGA+CGG | 0.796203 | 1_2:+4692225 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTAATTTTCTTTTATATT+TGG | - | chr1_2:4690633-4690652 | Msa0050690:CDS | 10.0% |
| !! | AACAAAAATTTAAACAAAAA+AGG | + | chr1_2:4690895-4690914 | None:intergenic | 10.0% |
| !! | TTTGTTTATTTATTTAAATG+TGG | - | chr1_2:4691079-4691098 | Msa0050690:intron | 10.0% |
| !! | AGCATAAATAATAATAATTA+TGG | + | chr1_2:4691682-4691701 | None:intergenic | 10.0% |
| !!! | TACTAATTTTCTTTTATATT+TGG | - | chr1_2:4690633-4690652 | Msa0050690:CDS | 10.0% |
| !! | AACAAAAATTTAAACAAAAA+AGG | + | chr1_2:4690895-4690914 | None:intergenic | 10.0% |
| !! | TTTGTTTATTTATTTAAATG+TGG | - | chr1_2:4691079-4691098 | Msa0050690:intron | 10.0% |
| !! | AGCATAAATAATAATAATTA+TGG | + | chr1_2:4691682-4691701 | None:intergenic | 10.0% |
| !!! | ATTTTCTTTTATATTTGGAA+CGG | - | chr1_2:4690638-4690657 | Msa0050690:CDS | 15.0% |
| !! | AATTGAATTGAATCAATAAT+TGG | - | chr1_2:4690982-4691001 | Msa0050690:intron | 15.0% |
| !! | AATAATAATAATTATGGATG+AGG | + | chr1_2:4691676-4691695 | None:intergenic | 15.0% |
| !! | AAACAAAAACATCAAAATAA+GGG | + | chr1_2:4691732-4691751 | None:intergenic | 15.0% |
| !! | TAAACAAAAACATCAAAATA+AGG | + | chr1_2:4691733-4691752 | None:intergenic | 15.0% |
| !!! | TTAATTTTATAGTGATGTAA+AGG | - | chr1_2:4691750-4691769 | Msa0050690:intron | 15.0% |
| !!! | TATCTTTTAGCATAAAAAAA+TGG | + | chr1_2:4691830-4691849 | None:intergenic | 15.0% |
| !! | AATTCGTATCATAAAAATTA+GGG | + | chr1_2:4692230-4692249 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTATATTTGGAA+CGG | - | chr1_2:4690638-4690657 | Msa0050690:CDS | 15.0% |
| !! | AATTGAATTGAATCAATAAT+TGG | - | chr1_2:4690982-4691001 | Msa0050690:intron | 15.0% |
| !! | AATAATAATAATTATGGATG+AGG | + | chr1_2:4691676-4691695 | None:intergenic | 15.0% |
| !! | AAACAAAAACATCAAAATAA+GGG | + | chr1_2:4691732-4691751 | None:intergenic | 15.0% |
| !! | TAAACAAAAACATCAAAATA+AGG | + | chr1_2:4691733-4691752 | None:intergenic | 15.0% |
| !!! | TTAATTTTATAGTGATGTAA+AGG | - | chr1_2:4691750-4691769 | Msa0050690:intron | 15.0% |
| !!! | TATCTTTTAGCATAAAAAAA+TGG | + | chr1_2:4691830-4691849 | None:intergenic | 15.0% |
| !! | AATTCGTATCATAAAAATTA+GGG | + | chr1_2:4692230-4692249 | None:intergenic | 15.0% |
| !! | TTAATGATTAAGCATGATTA+TGG | - | chr1_2:4690685-4690704 | Msa0050690:CDS | 20.0% |
| !!! | ATTGATGATTTGTTTTGATT+TGG | - | chr1_2:4690715-4690734 | Msa0050690:CDS | 20.0% |
| !!! | TTTGTTTAAATTTTTGTTGC+AGG | - | chr1_2:4690897-4690916 | Msa0050690:intron | 20.0% |
| !! | TTCAATTCAATTCATGAATT+AGG | + | chr1_2:4690974-4690993 | None:intergenic | 20.0% |
| !!! | AGTACTTTCATTTTTAAAGA+TGG | - | chr1_2:4691445-4691464 | Msa0050690:intron | 20.0% |
| !! | GTAATAATCATAATCAAAAG+AGG | + | chr1_2:4691581-4691600 | None:intergenic | 20.0% |
| !! | AACAAAAACATCAAAATAAG+GGG | + | chr1_2:4691731-4691750 | None:intergenic | 20.0% |
| !! | CAATTCGTATCATAAAAATT+AGG | + | chr1_2:4692231-4692250 | None:intergenic | 20.0% |
| !! | TTAATGATTAAGCATGATTA+TGG | - | chr1_2:4690685-4690704 | Msa0050690:CDS | 20.0% |
| !!! | ATTGATGATTTGTTTTGATT+TGG | - | chr1_2:4690715-4690734 | Msa0050690:CDS | 20.0% |
| !!! | TTTGTTTAAATTTTTGTTGC+AGG | - | chr1_2:4690897-4690916 | Msa0050690:intron | 20.0% |
| !! | TTCAATTCAATTCATGAATT+AGG | + | chr1_2:4690974-4690993 | None:intergenic | 20.0% |
| !!! | AGTACTTTCATTTTTAAAGA+TGG | - | chr1_2:4691445-4691464 | Msa0050690:intron | 20.0% |
| !! | GTAATAATCATAATCAAAAG+AGG | + | chr1_2:4691581-4691600 | None:intergenic | 20.0% |
| !! | AACAAAAACATCAAAATAAG+GGG | + | chr1_2:4691731-4691750 | None:intergenic | 20.0% |
| !! | CAATTCGTATCATAAAAATT+AGG | + | chr1_2:4692231-4692250 | None:intergenic | 20.0% |
| !! | CACTAAATTTTCCGATTTAA+CGG | - | chr1_2:4690450-4690469 | Msa0050690:intron | 25.0% |
| !!! | TCTTTTTATTTTGGTGTGTA+TGG | - | chr1_2:4690921-4690940 | Msa0050690:intron | 25.0% |
| ! | GTTTGTGGTTATTATTTGTT+TGG | - | chr1_2:4690943-4690962 | Msa0050690:intron | 25.0% |
| !!! | AATTTGTTAATCCAAAGAGA+TGG | - | chr1_2:4691174-4691193 | Msa0050690:intron | 25.0% |
| ! | GACTCTAATTATTGTAAAGA+GGG | + | chr1_2:4691507-4691526 | None:intergenic | 25.0% |
| ! | AGACTCTAATTATTGTAAAG+AGG | + | chr1_2:4691508-4691527 | None:intergenic | 25.0% |
| ! | CATTAATTAATATGCATCGA+TGG | + | chr1_2:4691866-4691885 | None:intergenic | 25.0% |
| ! | CATCGATGCATATTAATTAA+TGG | - | chr1_2:4691864-4691883 | Msa0050690:CDS | 25.0% |
| !! | AAGTCGGTATTTCTATAATT+AGG | + | chr1_2:4692258-4692277 | None:intergenic | 25.0% |
| !! | CACTAAATTTTCCGATTTAA+CGG | - | chr1_2:4690450-4690469 | Msa0050690:intron | 25.0% |
| !!! | TCTTTTTATTTTGGTGTGTA+TGG | - | chr1_2:4690921-4690940 | Msa0050690:intron | 25.0% |
| ! | GTTTGTGGTTATTATTTGTT+TGG | - | chr1_2:4690943-4690962 | Msa0050690:intron | 25.0% |
| !!! | AATTTGTTAATCCAAAGAGA+TGG | - | chr1_2:4691174-4691193 | Msa0050690:intron | 25.0% |
| ! | GACTCTAATTATTGTAAAGA+GGG | + | chr1_2:4691507-4691526 | None:intergenic | 25.0% |
| ! | AGACTCTAATTATTGTAAAG+AGG | + | chr1_2:4691508-4691527 | None:intergenic | 25.0% |
| ! | CATTAATTAATATGCATCGA+TGG | + | chr1_2:4691866-4691885 | None:intergenic | 25.0% |
| ! | CATCGATGCATATTAATTAA+TGG | - | chr1_2:4691864-4691883 | Msa0050690:CDS | 25.0% |
| !! | AAGTCGGTATTTCTATAATT+AGG | + | chr1_2:4692258-4692277 | None:intergenic | 25.0% |
| AGATTGTTAGTAGGAAGAAT+CGG | + | chr1_2:4690547-4690566 | None:intergenic | 30.0% | |
| !!! | TGTTTTGATTTGGTGTGATT+AGG | - | chr1_2:4690725-4690744 | Msa0050690:CDS | 30.0% |
| !!! | GTTTTGATTTGGTGTGATTA+GGG | - | chr1_2:4690726-4690745 | Msa0050690:CDS | 30.0% |
| TTTGGAAGGAGCAAATTATT+TGG | - | chr1_2:4690788-4690807 | Msa0050690:CDS | 30.0% | |
| !! | GTTGCAGGTTCTTTTTATTT+TGG | - | chr1_2:4690912-4690931 | Msa0050690:intron | 30.0% |
| TTCTTCAGATGTTCTGTTAT+TGG | - | chr1_2:4691019-4691038 | Msa0050690:intron | 30.0% | |
| ! | TTAAATGTGGATTACAAACC+TGG | - | chr1_2:4691092-4691111 | Msa0050690:intron | 30.0% |
| !!! | TGGAACCATTTGTTTTAGAA+TGG | - | chr1_2:4691194-4691213 | Msa0050690:intron | 30.0% |
| !! | GACAACCATTCTAAAACAAA+TGG | + | chr1_2:4691202-4691221 | None:intergenic | 30.0% |
| GATCATAATGTGTTCCTATA+TGG | - | chr1_2:4691290-4691309 | Msa0050690:intron | 30.0% | |
| ! | TTCTTCTTAAGCTGTTTCAA+CGG | - | chr1_2:4691363-4691382 | Msa0050690:intron | 30.0% |
| TTATGGATGAGGATAAAACT+CGG | + | chr1_2:4691665-4691684 | None:intergenic | 30.0% | |
| ! | TAATTAATATGCATCGATGG+TGG | + | chr1_2:4691863-4691882 | None:intergenic | 30.0% |
| TTACTAGATTTGCAGCAATT+TGG | + | chr1_2:4692108-4692127 | None:intergenic | 30.0% | |
| GAATTCTTTATGATCCAGTA+AGG | + | chr1_2:4692442-4692461 | None:intergenic | 30.0% | |
| ACTGGATCATAAAGAATTCA+TGG | - | chr1_2:4692443-4692462 | Msa0050690:CDS | 30.0% | |
| CTGGATCATAAAGAATTCAT+GGG | - | chr1_2:4692444-4692463 | Msa0050690:CDS | 30.0% | |
| TGGATCATAAAGAATTCATG+GGG | - | chr1_2:4692445-4692464 | Msa0050690:CDS | 30.0% | |
| AGATTGTTAGTAGGAAGAAT+CGG | + | chr1_2:4690547-4690566 | None:intergenic | 30.0% | |
| !!! | TGTTTTGATTTGGTGTGATT+AGG | - | chr1_2:4690725-4690744 | Msa0050690:CDS | 30.0% |
| !!! | GTTTTGATTTGGTGTGATTA+GGG | - | chr1_2:4690726-4690745 | Msa0050690:CDS | 30.0% |
| TTTGGAAGGAGCAAATTATT+TGG | - | chr1_2:4690788-4690807 | Msa0050690:CDS | 30.0% | |
| !! | GTTGCAGGTTCTTTTTATTT+TGG | - | chr1_2:4690912-4690931 | Msa0050690:intron | 30.0% |
| TTCTTCAGATGTTCTGTTAT+TGG | - | chr1_2:4691019-4691038 | Msa0050690:intron | 30.0% | |
| ! | TTAAATGTGGATTACAAACC+TGG | - | chr1_2:4691092-4691111 | Msa0050690:intron | 30.0% |
| !!! | TGGAACCATTTGTTTTAGAA+TGG | - | chr1_2:4691194-4691213 | Msa0050690:intron | 30.0% |
| !! | GACAACCATTCTAAAACAAA+TGG | + | chr1_2:4691202-4691221 | None:intergenic | 30.0% |
| GATCATAATGTGTTCCTATA+TGG | - | chr1_2:4691290-4691309 | Msa0050690:intron | 30.0% | |
| ! | TTCTTCTTAAGCTGTTTCAA+CGG | - | chr1_2:4691363-4691382 | Msa0050690:intron | 30.0% |
| TTATGGATGAGGATAAAACT+CGG | + | chr1_2:4691665-4691684 | None:intergenic | 30.0% | |
| ! | TAATTAATATGCATCGATGG+TGG | + | chr1_2:4691863-4691882 | None:intergenic | 30.0% |
| TTACTAGATTTGCAGCAATT+TGG | + | chr1_2:4692108-4692127 | None:intergenic | 30.0% | |
| GAATTCTTTATGATCCAGTA+AGG | + | chr1_2:4692442-4692461 | None:intergenic | 30.0% | |
| ACTGGATCATAAAGAATTCA+TGG | - | chr1_2:4692443-4692462 | Msa0050690:CDS | 30.0% | |
| CTGGATCATAAAGAATTCAT+GGG | - | chr1_2:4692444-4692463 | Msa0050690:CDS | 30.0% | |
| TGGATCATAAAGAATTCATG+GGG | - | chr1_2:4692445-4692464 | Msa0050690:CDS | 30.0% | |
| GTTTAGTATGTGATCTTCAG+CGG | + | chr1_2:4690281-4690300 | None:intergenic | 35.0% | |
| ! | GAAGAACATGATTACCGATT+TGG | - | chr1_2:4690358-4690377 | Msa0050690:CDS | 35.0% |
| ! | TTGATTTGAACACGCCAAAT+CGG | + | chr1_2:4690375-4690394 | None:intergenic | 35.0% |
| ! | TTTTAGTACAACTGGAGCTT+TGG | - | chr1_2:4690770-4690789 | Msa0050690:CDS | 35.0% |
| !! | ATTTTGGTGTGTATGGTTTG+TGG | - | chr1_2:4690928-4690947 | Msa0050690:intron | 35.0% |
| ACTGAATTGAACCAACATCT+TGG | - | chr1_2:4691118-4691137 | Msa0050690:intron | 35.0% | |
| AACAAATGGTTCCATCTCTT+TGG | + | chr1_2:4691188-4691207 | None:intergenic | 35.0% | |
| GATTCAACTCTACTCCATAT+AGG | + | chr1_2:4691307-4691326 | None:intergenic | 35.0% | |
| TAAGAAGAATCCAACCAAAC+AGG | + | chr1_2:4691352-4691371 | None:intergenic | 35.0% | |
| ! | TCTTCTTAAGCTGTTTCAAC+GGG | - | chr1_2:4691364-4691383 | Msa0050690:intron | 35.0% |
| !!! | GACTGAGTTTTTTAAACCTG+AGG | - | chr1_2:4691622-4691641 | Msa0050690:intron | 35.0% |
| TTTAAACCTGAGGTCAAAGA+TGG | - | chr1_2:4691632-4691651 | Msa0050690:intron | 35.0% | |
| TTAAACCTGAGGTCAAAGAT+GGG | - | chr1_2:4691633-4691652 | Msa0050690:intron | 35.0% | |
| ACATGAGAATACAACAAGCA+TGG | + | chr1_2:4691802-4691821 | None:intergenic | 35.0% | |
| AACGACACTGAAGTTAGATA+CGG | + | chr1_2:4692071-4692090 | None:intergenic | 35.0% | |
| GCTGCAAATCTAGTAAAGAA+TGG | - | chr1_2:4692112-4692131 | Msa0050690:CDS | 35.0% | |
| !! | ATACCGACTTATGCTTTGTT+TGG | - | chr1_2:4692268-4692287 | Msa0050690:CDS | 35.0% |
| GGATATTATAAGATCTGCAG+AGG | - | chr1_2:4692487-4692506 | Msa0050690:CDS | 35.0% | |
| AATCCACTCCACATACATTT+CGG | + | chr1_2:4692513-4692532 | None:intergenic | 35.0% | |
| GTTTAGTATGTGATCTTCAG+CGG | + | chr1_2:4690281-4690300 | None:intergenic | 35.0% | |
| ! | GAAGAACATGATTACCGATT+TGG | - | chr1_2:4690358-4690377 | Msa0050690:CDS | 35.0% |
| ! | TTGATTTGAACACGCCAAAT+CGG | + | chr1_2:4690375-4690394 | None:intergenic | 35.0% |
| ! | TTTTAGTACAACTGGAGCTT+TGG | - | chr1_2:4690770-4690789 | Msa0050690:CDS | 35.0% |
| !! | ATTTTGGTGTGTATGGTTTG+TGG | - | chr1_2:4690928-4690947 | Msa0050690:intron | 35.0% |
| ACTGAATTGAACCAACATCT+TGG | - | chr1_2:4691118-4691137 | Msa0050690:intron | 35.0% | |
| AACAAATGGTTCCATCTCTT+TGG | + | chr1_2:4691188-4691207 | None:intergenic | 35.0% | |
| GATTCAACTCTACTCCATAT+AGG | + | chr1_2:4691307-4691326 | None:intergenic | 35.0% | |
| TAAGAAGAATCCAACCAAAC+AGG | + | chr1_2:4691352-4691371 | None:intergenic | 35.0% | |
| ! | TCTTCTTAAGCTGTTTCAAC+GGG | - | chr1_2:4691364-4691383 | Msa0050690:intron | 35.0% |
| !!! | GACTGAGTTTTTTAAACCTG+AGG | - | chr1_2:4691622-4691641 | Msa0050690:intron | 35.0% |
| TTTAAACCTGAGGTCAAAGA+TGG | - | chr1_2:4691632-4691651 | Msa0050690:intron | 35.0% | |
| TTAAACCTGAGGTCAAAGAT+GGG | - | chr1_2:4691633-4691652 | Msa0050690:intron | 35.0% | |
| ACATGAGAATACAACAAGCA+TGG | + | chr1_2:4691802-4691821 | None:intergenic | 35.0% | |
| AACGACACTGAAGTTAGATA+CGG | + | chr1_2:4692071-4692090 | None:intergenic | 35.0% | |
| GCTGCAAATCTAGTAAAGAA+TGG | - | chr1_2:4692112-4692131 | Msa0050690:CDS | 35.0% | |
| !! | ATACCGACTTATGCTTTGTT+TGG | - | chr1_2:4692268-4692287 | Msa0050690:CDS | 35.0% |
| GGATATTATAAGATCTGCAG+AGG | - | chr1_2:4692487-4692506 | Msa0050690:CDS | 35.0% | |
| AATCCACTCCACATACATTT+CGG | + | chr1_2:4692513-4692532 | None:intergenic | 35.0% | |
| !! | ATCTCCCAGAGGATTTTGAT+TGG | - | chr1_2:4690563-4690582 | Msa0050690:intron | 40.0% |
| ! | TGTTGGGCTTTTAGTACAAC+TGG | - | chr1_2:4690762-4690781 | Msa0050690:CDS | 40.0% |
| GAGCAAATTATTTGGCGACT+GGG | - | chr1_2:4690796-4690815 | Msa0050690:CDS | 40.0% | |
| TTGGTTCAATTCAGTTCACC+AGG | + | chr1_2:4691113-4691132 | None:intergenic | 40.0% | |
| AACCAACATCTTGGTTGAGT+TGG | - | chr1_2:4691127-4691146 | Msa0050690:intron | 40.0% | |
| AACCAACTCAACCAAGATGT+TGG | + | chr1_2:4691132-4691151 | None:intergenic | 40.0% | |
| !! | CATCTTGGTTGAGTTGGTTA+TGG | - | chr1_2:4691133-4691152 | Msa0050690:intron | 40.0% |
| !! | TGGTTGAGTTGGTTATGGTT+TGG | - | chr1_2:4691138-4691157 | Msa0050690:intron | 40.0% |
| !! | GGTTGAGTTGGTTATGGTTT+GGG | - | chr1_2:4691139-4691158 | Msa0050690:intron | 40.0% |
| TGGAGTAGAGTTGAATCACT+TGG | - | chr1_2:4691310-4691329 | Msa0050690:intron | 40.0% | |
| AAGAATCCAACCAAACAGGT+AGG | + | chr1_2:4691348-4691367 | None:intergenic | 40.0% | |
| TAGAGTCTGAGAAAGACTTG+AGG | - | chr1_2:4691520-4691539 | Msa0050690:intron | 40.0% | |
| CTTGAGGACTTCCTTAAGAT+CGG | - | chr1_2:4691536-4691555 | Msa0050690:intron | 40.0% | |
| ! | ACTTCCTTAAGATCGGTTCT+GGG | - | chr1_2:4691543-4691562 | Msa0050690:intron | 40.0% |
| TCACAAGAATTACGTTCCTC+TGG | + | chr1_2:4691911-4691930 | None:intergenic | 40.0% | |
| GAACGTAATTCTTGTGACTC+TGG | - | chr1_2:4691914-4691933 | Msa0050690:CDS | 40.0% | |
| TTCGAATACATACTCCAGTC+TGG | - | chr1_2:4691965-4691984 | Msa0050690:intron | 40.0% | |
| TCGAATACATACTCCAGTCT+GGG | - | chr1_2:4691966-4691985 | Msa0050690:intron | 40.0% | |
| GAAAAGGACTATGCTTACAC+CGG | - | chr1_2:4692001-4692020 | Msa0050690:intron | 40.0% | |
| !! | CTTGCTTTTGTCAAACTTGC+AGG | + | chr1_2:4692038-4692057 | None:intergenic | 40.0% |
| ACAATTAGCTACCTGCAAGA+GGG | + | chr1_2:4692138-4692157 | None:intergenic | 40.0% | |
| AACAATTAGCTACCTGCAAG+AGG | + | chr1_2:4692139-4692158 | None:intergenic | 40.0% | |
| GCACCAAACAAAGCATAAGT+CGG | + | chr1_2:4692274-4692293 | None:intergenic | 40.0% | |
| TGGATGCAGACATATATGAG+TGG | - | chr1_2:4692313-4692332 | Msa0050690:CDS | 40.0% | |
| ! | GGCTTTTCCTTCAATCGAAT+GGG | + | chr1_2:4692421-4692440 | None:intergenic | 40.0% |
| ! | AGGCTTTTCCTTCAATCGAA+TGG | + | chr1_2:4692422-4692441 | None:intergenic | 40.0% |
| GATTGAAGGAAAAGCCTTAC+TGG | - | chr1_2:4692425-4692444 | Msa0050690:CDS | 40.0% | |
| !! | ATCTCCCAGAGGATTTTGAT+TGG | - | chr1_2:4690563-4690582 | Msa0050690:intron | 40.0% |
| ! | TGTTGGGCTTTTAGTACAAC+TGG | - | chr1_2:4690762-4690781 | Msa0050690:CDS | 40.0% |
| GAGCAAATTATTTGGCGACT+GGG | - | chr1_2:4690796-4690815 | Msa0050690:CDS | 40.0% | |
| TTGGTTCAATTCAGTTCACC+AGG | + | chr1_2:4691113-4691132 | None:intergenic | 40.0% | |
| AACCAACATCTTGGTTGAGT+TGG | - | chr1_2:4691127-4691146 | Msa0050690:intron | 40.0% | |
| AACCAACTCAACCAAGATGT+TGG | + | chr1_2:4691132-4691151 | None:intergenic | 40.0% | |
| !! | CATCTTGGTTGAGTTGGTTA+TGG | - | chr1_2:4691133-4691152 | Msa0050690:intron | 40.0% |
| !! | TGGTTGAGTTGGTTATGGTT+TGG | - | chr1_2:4691138-4691157 | Msa0050690:intron | 40.0% |
| !! | GGTTGAGTTGGTTATGGTTT+GGG | - | chr1_2:4691139-4691158 | Msa0050690:intron | 40.0% |
| TGGAGTAGAGTTGAATCACT+TGG | - | chr1_2:4691310-4691329 | Msa0050690:intron | 40.0% | |
| AAGAATCCAACCAAACAGGT+AGG | + | chr1_2:4691348-4691367 | None:intergenic | 40.0% | |
| TAGAGTCTGAGAAAGACTTG+AGG | - | chr1_2:4691520-4691539 | Msa0050690:intron | 40.0% | |
| CTTGAGGACTTCCTTAAGAT+CGG | - | chr1_2:4691536-4691555 | Msa0050690:intron | 40.0% | |
| ! | ACTTCCTTAAGATCGGTTCT+GGG | - | chr1_2:4691543-4691562 | Msa0050690:intron | 40.0% |
| TCACAAGAATTACGTTCCTC+TGG | + | chr1_2:4691911-4691930 | None:intergenic | 40.0% | |
| GAACGTAATTCTTGTGACTC+TGG | - | chr1_2:4691914-4691933 | Msa0050690:CDS | 40.0% | |
| TTCGAATACATACTCCAGTC+TGG | - | chr1_2:4691965-4691984 | Msa0050690:intron | 40.0% | |
| TCGAATACATACTCCAGTCT+GGG | - | chr1_2:4691966-4691985 | Msa0050690:intron | 40.0% | |
| GAAAAGGACTATGCTTACAC+CGG | - | chr1_2:4692001-4692020 | Msa0050690:intron | 40.0% | |
| !! | CTTGCTTTTGTCAAACTTGC+AGG | + | chr1_2:4692038-4692057 | None:intergenic | 40.0% |
| ACAATTAGCTACCTGCAAGA+GGG | + | chr1_2:4692138-4692157 | None:intergenic | 40.0% | |
| AACAATTAGCTACCTGCAAG+AGG | + | chr1_2:4692139-4692158 | None:intergenic | 40.0% | |
| GCACCAAACAAAGCATAAGT+CGG | + | chr1_2:4692274-4692293 | None:intergenic | 40.0% | |
| TGGATGCAGACATATATGAG+TGG | - | chr1_2:4692313-4692332 | Msa0050690:CDS | 40.0% | |
| ! | GGCTTTTCCTTCAATCGAAT+GGG | + | chr1_2:4692421-4692440 | None:intergenic | 40.0% |
| ! | AGGCTTTTCCTTCAATCGAA+TGG | + | chr1_2:4692422-4692441 | None:intergenic | 40.0% |
| GATTGAAGGAAAAGCCTTAC+TGG | - | chr1_2:4692425-4692444 | Msa0050690:CDS | 40.0% | |
| TTGTCGGATGAGAAGATCGT+CGG | + | chr1_2:4690248-4690267 | None:intergenic | 45.0% | |
| GAACTCAGACGCCGTTAAAT+CGG | + | chr1_2:4690464-4690483 | None:intergenic | 45.0% | |
| TCAGTCCAAGAAACTGACGA+CGG | + | chr1_2:4690486-4690505 | None:intergenic | 45.0% | |
| GAACAAACGTCTCCGTTTAC+CGG | - | chr1_2:4690504-4690523 | Msa0050690:intron | 45.0% | |
| TCCTACTAACAATCTCCCAG+AGG | - | chr1_2:4690552-4690571 | Msa0050690:intron | 45.0% | |
| ! | TCCTCTGGGAGATTGTTAGT+AGG | + | chr1_2:4690556-4690575 | None:intergenic | 45.0% |
| !!! | GATTTTGATTGGCGCGAGAA+AGG | - | chr1_2:4690574-4690593 | Msa0050690:intron | 45.0% |
| ATACATGCCTGATCCTTGAC+GGG | + | chr1_2:4690610-4690629 | None:intergenic | 45.0% | |
| GATACATGCCTGATCCTTGA+CGG | + | chr1_2:4690611-4690630 | None:intergenic | 45.0% | |
| TGGTGTGATTAGGGTTCATG+CGG | - | chr1_2:4690735-4690754 | Msa0050690:CDS | 45.0% | |
| !! | AGTACAACTGGAGCTTTGGA+AGG | - | chr1_2:4690774-4690793 | Msa0050690:CDS | 45.0% |
| GGAGCAAATTATTTGGCGAC+TGG | - | chr1_2:4690795-4690814 | Msa0050690:CDS | 45.0% | |
| TCTTAGTGAGCAACAGCTTG+TGG | - | chr1_2:4690830-4690849 | Msa0050690:intron | 45.0% | |
| ! | GCTTGTGGATTGTGATCATG+TGG | - | chr1_2:4690845-4690864 | Msa0050690:intron | 45.0% |
| TGCAATGAGTCCTACCTGTT+TGG | - | chr1_2:4691335-4691354 | Msa0050690:intron | 45.0% | |
| ATGAGTCCTACCTGTTTGGT+TGG | - | chr1_2:4691339-4691358 | Msa0050690:intron | 45.0% | |
| AAAGAGGGAGTGAGCACTTT+AGG | + | chr1_2:4691492-4691511 | None:intergenic | 45.0% | |
| ! | GACTTCCTTAAGATCGGTTC+TGG | - | chr1_2:4691542-4691561 | Msa0050690:intron | 45.0% |
| GTTTCCCAGAACCGATCTTA+AGG | + | chr1_2:4691550-4691569 | None:intergenic | 45.0% | |
| AATCTTGCAGTGTGATCCAG+AGG | - | chr1_2:4691892-4691911 | Msa0050690:CDS | 45.0% | |
| TCTTGTGACTCTGGCTGTAA+CGG | - | chr1_2:4691923-4691942 | Msa0050690:CDS | 45.0% | |
| CGAATACATACTCCAGTCTG+GGG | - | chr1_2:4691967-4691986 | Msa0050690:intron | 45.0% | |
| GAATACATACTCCAGTCTGG+GGG | - | chr1_2:4691968-4691987 | Msa0050690:intron | 45.0% | |
| TATGCTTACACCGGAAGAGA+TGG | - | chr1_2:4692010-4692029 | Msa0050690:intron | 45.0% | |
| GTGCTTTGGCACAGATGTAT+GGG | + | chr1_2:4692348-4692367 | None:intergenic | 45.0% | |
| CCAAAGCACGTTTGGATCAT+GGG | - | chr1_2:4692359-4692378 | Msa0050690:CDS | 45.0% | |
| CAAAGCACGTTTGGATCATG+GGG | - | chr1_2:4692360-4692379 | Msa0050690:CDS | 45.0% | |
| GATCATGGGGTTCTTCTAGT+TGG | - | chr1_2:4692373-4692392 | Msa0050690:CDS | 45.0% | |
| !! | GGGGTTCTTCTAGTTGGTTT+TGG | - | chr1_2:4692379-4692398 | Msa0050690:CDS | 45.0% |
| !!! | CTTCTAGTTGGTTTTGGCAG+TGG | - | chr1_2:4692385-4692404 | Msa0050690:CDS | 45.0% |
| CTATGCTCCCATTCGATTGA+AGG | - | chr1_2:4692411-4692430 | Msa0050690:CDS | 45.0% | |
| AGAATTCATGGGGCCAGAAT+TGG | - | chr1_2:4692455-4692474 | Msa0050690:CDS | 45.0% | |
| GAATTCATGGGGCCAGAATT+GGG | - | chr1_2:4692456-4692475 | Msa0050690:CDS | 45.0% | |
| AATTCATGGGGCCAGAATTG+GGG | - | chr1_2:4692457-4692476 | Msa0050690:CDS | 45.0% | |
| ! | TGTATGTGGAGTGGATTCCA+TGG | - | chr1_2:4692516-4692535 | Msa0050690:CDS | 45.0% |
| TTGTCGGATGAGAAGATCGT+CGG | + | chr1_2:4690248-4690267 | None:intergenic | 45.0% | |
| GAACTCAGACGCCGTTAAAT+CGG | + | chr1_2:4690464-4690483 | None:intergenic | 45.0% | |
| TCAGTCCAAGAAACTGACGA+CGG | + | chr1_2:4690486-4690505 | None:intergenic | 45.0% | |
| GAACAAACGTCTCCGTTTAC+CGG | - | chr1_2:4690504-4690523 | Msa0050690:intron | 45.0% | |
| TCCTACTAACAATCTCCCAG+AGG | - | chr1_2:4690552-4690571 | Msa0050690:intron | 45.0% | |
| ! | TCCTCTGGGAGATTGTTAGT+AGG | + | chr1_2:4690556-4690575 | None:intergenic | 45.0% |
| !!! | GATTTTGATTGGCGCGAGAA+AGG | - | chr1_2:4690574-4690593 | Msa0050690:intron | 45.0% |
| ATACATGCCTGATCCTTGAC+GGG | + | chr1_2:4690610-4690629 | None:intergenic | 45.0% | |
| GATACATGCCTGATCCTTGA+CGG | + | chr1_2:4690611-4690630 | None:intergenic | 45.0% | |
| TGGTGTGATTAGGGTTCATG+CGG | - | chr1_2:4690735-4690754 | Msa0050690:CDS | 45.0% | |
| !! | AGTACAACTGGAGCTTTGGA+AGG | - | chr1_2:4690774-4690793 | Msa0050690:CDS | 45.0% |
| GGAGCAAATTATTTGGCGAC+TGG | - | chr1_2:4690795-4690814 | Msa0050690:CDS | 45.0% | |
| TCTTAGTGAGCAACAGCTTG+TGG | - | chr1_2:4690830-4690849 | Msa0050690:intron | 45.0% | |
| ! | GCTTGTGGATTGTGATCATG+TGG | - | chr1_2:4690845-4690864 | Msa0050690:intron | 45.0% |
| TGCAATGAGTCCTACCTGTT+TGG | - | chr1_2:4691335-4691354 | Msa0050690:intron | 45.0% | |
| ATGAGTCCTACCTGTTTGGT+TGG | - | chr1_2:4691339-4691358 | Msa0050690:intron | 45.0% | |
| AAAGAGGGAGTGAGCACTTT+AGG | + | chr1_2:4691492-4691511 | None:intergenic | 45.0% | |
| ! | GACTTCCTTAAGATCGGTTC+TGG | - | chr1_2:4691542-4691561 | Msa0050690:intron | 45.0% |
| GTTTCCCAGAACCGATCTTA+AGG | + | chr1_2:4691550-4691569 | None:intergenic | 45.0% | |
| AATCTTGCAGTGTGATCCAG+AGG | - | chr1_2:4691892-4691911 | Msa0050690:CDS | 45.0% | |
| TCTTGTGACTCTGGCTGTAA+CGG | - | chr1_2:4691923-4691942 | Msa0050690:CDS | 45.0% | |
| CGAATACATACTCCAGTCTG+GGG | - | chr1_2:4691967-4691986 | Msa0050690:intron | 45.0% | |
| GAATACATACTCCAGTCTGG+GGG | - | chr1_2:4691968-4691987 | Msa0050690:intron | 45.0% | |
| TATGCTTACACCGGAAGAGA+TGG | - | chr1_2:4692010-4692029 | Msa0050690:intron | 45.0% | |
| GTGCTTTGGCACAGATGTAT+GGG | + | chr1_2:4692348-4692367 | None:intergenic | 45.0% | |
| CCAAAGCACGTTTGGATCAT+GGG | - | chr1_2:4692359-4692378 | Msa0050690:CDS | 45.0% | |
| CAAAGCACGTTTGGATCATG+GGG | - | chr1_2:4692360-4692379 | Msa0050690:CDS | 45.0% | |
| GATCATGGGGTTCTTCTAGT+TGG | - | chr1_2:4692373-4692392 | Msa0050690:CDS | 45.0% | |
| !! | GGGGTTCTTCTAGTTGGTTT+TGG | - | chr1_2:4692379-4692398 | Msa0050690:CDS | 45.0% |
| !!! | CTTCTAGTTGGTTTTGGCAG+TGG | - | chr1_2:4692385-4692404 | Msa0050690:CDS | 45.0% |
| CTATGCTCCCATTCGATTGA+AGG | - | chr1_2:4692411-4692430 | Msa0050690:CDS | 45.0% | |
| AGAATTCATGGGGCCAGAAT+TGG | - | chr1_2:4692455-4692474 | Msa0050690:CDS | 45.0% | |
| GAATTCATGGGGCCAGAATT+GGG | - | chr1_2:4692456-4692475 | Msa0050690:CDS | 45.0% | |
| AATTCATGGGGCCAGAATTG+GGG | - | chr1_2:4692457-4692476 | Msa0050690:CDS | 45.0% | |
| ! | TGTATGTGGAGTGGATTCCA+TGG | - | chr1_2:4692516-4692535 | Msa0050690:CDS | 45.0% |
| GAGTGCGATGAGGAAACGAT+GGG | + | chr1_2:4690170-4690189 | None:intergenic | 50.0% | |
| AGAGTGCGATGAGGAAACGA+TGG | + | chr1_2:4690171-4690190 | None:intergenic | 50.0% | |
| !! | ATCGTCGGAGTTGGTGTCAT+CGG | + | chr1_2:4690233-4690252 | None:intergenic | 50.0% |
| GATGAGAAGATCGTCGGAGT+TGG | + | chr1_2:4690242-4690261 | None:intergenic | 50.0% | |
| CTTGATCCTTCTGCGCAACA+CGG | - | chr1_2:4690424-4690443 | Msa0050690:intron | 50.0% | |
| GAGTTCCGTCGTCAGTTTCT+TGG | - | chr1_2:4690478-4690497 | Msa0050690:intron | 50.0% | |
| CGCGCCAATCAAAATCCTCT+GGG | + | chr1_2:4690570-4690589 | None:intergenic | 50.0% | |
| TCGCGCCAATCAAAATCCTC+TGG | + | chr1_2:4690571-4690590 | None:intergenic | 50.0% | |
| CACGCTCTGATGTCAACGTA+AGG | - | chr1_2:4691391-4691410 | Msa0050690:intron | 50.0% | |
| ACCTGAGGTCAAAGATGGGT+TGG | - | chr1_2:4691637-4691656 | Msa0050690:intron | 50.0% | |
| TCCAACCCATCTTTGACCTC+AGG | + | chr1_2:4691641-4691660 | None:intergenic | 50.0% | |
| TGGGGGAGTAGTGTCAGAAA+AGG | - | chr1_2:4691985-4692004 | Msa0050690:intron | 50.0% | |
| CTTGCAGGATCCATCTCTTC+CGG | + | chr1_2:4692023-4692042 | None:intergenic | 50.0% | |
| GTAAAGAATGGCCCTCTTGC+AGG | - | chr1_2:4692124-4692143 | Msa0050690:CDS | 50.0% | |
| CAGTTGCTATCAATGCTGCG+TGG | - | chr1_2:4692293-4692312 | Msa0050690:CDS | 50.0% | |
| CGTGCTTTGGCACAGATGTA+TGG | + | chr1_2:4692349-4692368 | None:intergenic | 50.0% | |
| CATCTGTGCCAAAGCACGTT+TGG | - | chr1_2:4692351-4692370 | Msa0050690:CDS | 50.0% | |
| GCCAAAGCACGTTTGGATCA+TGG | - | chr1_2:4692358-4692377 | Msa0050690:CDS | 50.0% | |
| CCCATGATCCAAACGTGCTT+TGG | + | chr1_2:4692362-4692381 | None:intergenic | 50.0% | |
| !!! | CTAGTTGGTTTTGGCAGTGG+TGG | - | chr1_2:4692388-4692407 | Msa0050690:CDS | 50.0% |
| ATCCTTCCTCACCCCAATTC+TGG | + | chr1_2:4692471-4692490 | None:intergenic | 50.0% | |
| TGCAGAGGCCGAAATGTATG+TGG | - | chr1_2:4692502-4692521 | Msa0050690:CDS | 50.0% | |
| AGGCCGAAATGTATGTGGAG+TGG | - | chr1_2:4692507-4692526 | Msa0050690:CDS | 50.0% | |
| AGATTGAGCTGCAGCAACAG+TGG | + | chr1_2:4692545-4692564 | None:intergenic | 50.0% | |
| GAGTGCGATGAGGAAACGAT+GGG | + | chr1_2:4690170-4690189 | None:intergenic | 50.0% | |
| AGAGTGCGATGAGGAAACGA+TGG | + | chr1_2:4690171-4690190 | None:intergenic | 50.0% | |
| !! | ATCGTCGGAGTTGGTGTCAT+CGG | + | chr1_2:4690233-4690252 | None:intergenic | 50.0% |
| GATGAGAAGATCGTCGGAGT+TGG | + | chr1_2:4690242-4690261 | None:intergenic | 50.0% | |
| CTTGATCCTTCTGCGCAACA+CGG | - | chr1_2:4690424-4690443 | Msa0050690:intron | 50.0% | |
| GAGTTCCGTCGTCAGTTTCT+TGG | - | chr1_2:4690478-4690497 | Msa0050690:intron | 50.0% | |
| CGCGCCAATCAAAATCCTCT+GGG | + | chr1_2:4690570-4690589 | None:intergenic | 50.0% | |
| TCGCGCCAATCAAAATCCTC+TGG | + | chr1_2:4690571-4690590 | None:intergenic | 50.0% | |
| CACGCTCTGATGTCAACGTA+AGG | - | chr1_2:4691391-4691410 | Msa0050690:intron | 50.0% | |
| ACCTGAGGTCAAAGATGGGT+TGG | - | chr1_2:4691637-4691656 | Msa0050690:intron | 50.0% | |
| TCCAACCCATCTTTGACCTC+AGG | + | chr1_2:4691641-4691660 | None:intergenic | 50.0% | |
| TGGGGGAGTAGTGTCAGAAA+AGG | - | chr1_2:4691985-4692004 | Msa0050690:intron | 50.0% | |
| CTTGCAGGATCCATCTCTTC+CGG | + | chr1_2:4692023-4692042 | None:intergenic | 50.0% | |
| GTAAAGAATGGCCCTCTTGC+AGG | - | chr1_2:4692124-4692143 | Msa0050690:CDS | 50.0% | |
| CAGTTGCTATCAATGCTGCG+TGG | - | chr1_2:4692293-4692312 | Msa0050690:CDS | 50.0% | |
| CGTGCTTTGGCACAGATGTA+TGG | + | chr1_2:4692349-4692368 | None:intergenic | 50.0% | |
| CATCTGTGCCAAAGCACGTT+TGG | - | chr1_2:4692351-4692370 | Msa0050690:CDS | 50.0% | |
| GCCAAAGCACGTTTGGATCA+TGG | - | chr1_2:4692358-4692377 | Msa0050690:CDS | 50.0% | |
| CCCATGATCCAAACGTGCTT+TGG | + | chr1_2:4692362-4692381 | None:intergenic | 50.0% | |
| !!! | CTAGTTGGTTTTGGCAGTGG+TGG | - | chr1_2:4692388-4692407 | Msa0050690:CDS | 50.0% |
| ATCCTTCCTCACCCCAATTC+TGG | + | chr1_2:4692471-4692490 | None:intergenic | 50.0% | |
| TGCAGAGGCCGAAATGTATG+TGG | - | chr1_2:4692502-4692521 | Msa0050690:CDS | 50.0% | |
| AGGCCGAAATGTATGTGGAG+TGG | - | chr1_2:4692507-4692526 | Msa0050690:CDS | 50.0% | |
| AGATTGAGCTGCAGCAACAG+TGG | + | chr1_2:4692545-4692564 | None:intergenic | 50.0% | |
| ! | CGAAGAGGAAGAGTGCGATG+AGG | + | chr1_2:4690180-4690199 | None:intergenic | 55.0% |
| GTCATCGGAGAGGGTTTGTG+CGG | + | chr1_2:4690218-4690237 | None:intergenic | 55.0% | |
| !! | GGAGTTGGTGTCATCGGAGA+GGG | + | chr1_2:4690227-4690246 | None:intergenic | 55.0% |
| GCGCAGAAGGATCAAGCTTC+TGG | + | chr1_2:4690420-4690439 | None:intergenic | 55.0% | |
| GTGATTCCGTGTTGCGCAGA+AGG | + | chr1_2:4690433-4690452 | None:intergenic | 55.0% | |
| TCTGAGCGTGAGCCGGTAAA+CGG | + | chr1_2:4690519-4690538 | None:intergenic | 55.0% | |
| !! | TTTACCGGCTCACGCTCAGA+AGG | - | chr1_2:4690519-4690538 | Msa0050690:intron | 55.0% |
| CTGATCCTTGACGGGAGTGA+CGG | + | chr1_2:4690602-4690621 | None:intergenic | 55.0% | |
| AGGGTTCATGCGGTTCGTGT+TGG | - | chr1_2:4690745-4690764 | Msa0050690:CDS | 55.0% | |
| GGGTTCATGCGGTTCGTGTT+GGG | - | chr1_2:4690746-4690765 | Msa0050690:CDS | 55.0% | |
| GGGAGTGAGCACTTTAGGCA+TGG | + | chr1_2:4691487-4691506 | None:intergenic | 55.0% | |
| TGTGACTCTGGCTGTAACGG+TGG | - | chr1_2:4691926-4691945 | Msa0050690:CDS | 55.0% | |
| TGCAGCAACAGTGGAGACCA+TGG | + | chr1_2:4692536-4692555 | None:intergenic | 55.0% | |
| ! | CGAAGAGGAAGAGTGCGATG+AGG | + | chr1_2:4690180-4690199 | None:intergenic | 55.0% |
| GTCATCGGAGAGGGTTTGTG+CGG | + | chr1_2:4690218-4690237 | None:intergenic | 55.0% | |
| !! | GGAGTTGGTGTCATCGGAGA+GGG | + | chr1_2:4690227-4690246 | None:intergenic | 55.0% |
| GCGCAGAAGGATCAAGCTTC+TGG | + | chr1_2:4690420-4690439 | None:intergenic | 55.0% | |
| GTGATTCCGTGTTGCGCAGA+AGG | + | chr1_2:4690433-4690452 | None:intergenic | 55.0% | |
| TCTGAGCGTGAGCCGGTAAA+CGG | + | chr1_2:4690519-4690538 | None:intergenic | 55.0% | |
| !! | TTTACCGGCTCACGCTCAGA+AGG | - | chr1_2:4690519-4690538 | Msa0050690:intron | 55.0% |
| CTGATCCTTGACGGGAGTGA+CGG | + | chr1_2:4690602-4690621 | None:intergenic | 55.0% | |
| AGGGTTCATGCGGTTCGTGT+TGG | - | chr1_2:4690745-4690764 | Msa0050690:CDS | 55.0% | |
| GGGTTCATGCGGTTCGTGTT+GGG | - | chr1_2:4690746-4690765 | Msa0050690:CDS | 55.0% | |
| GGGAGTGAGCACTTTAGGCA+TGG | + | chr1_2:4691487-4691506 | None:intergenic | 55.0% | |
| TGTGACTCTGGCTGTAACGG+TGG | - | chr1_2:4691926-4691945 | Msa0050690:CDS | 55.0% | |
| TGCAGCAACAGTGGAGACCA+TGG | + | chr1_2:4692536-4692555 | None:intergenic | 55.0% | |
| TTGTGCGGCGGTTGCAACAG+CGG | + | chr1_2:4690203-4690222 | None:intergenic | 60.0% | |
| ATCGGAGAGGGTTTGTGCGG+CGG | + | chr1_2:4690215-4690234 | None:intergenic | 60.0% | |
| !! | CGGAGTTGGTGTCATCGGAG+AGG | + | chr1_2:4690228-4690247 | None:intergenic | 60.0% |
| !! | CAGCGGTGTCGACGACTTGT+CGG | + | chr1_2:4690264-4690283 | None:intergenic | 60.0% |
| CGTCACTCCCGTCAAGGATC+AGG | - | chr1_2:4690600-4690619 | Msa0050690:CDS | 60.0% | |
| CTGACACTACTCCCCCAGAC+TGG | + | chr1_2:4691982-4692001 | None:intergenic | 60.0% | |
| ATGGGGCCAGAATTGGGGTG+AGG | - | chr1_2:4692462-4692481 | Msa0050690:CDS | 60.0% | |
| GGCCAGAATTGGGGTGAGGA+AGG | - | chr1_2:4692466-4692485 | Msa0050690:CDS | 60.0% | |
| TTGTGCGGCGGTTGCAACAG+CGG | + | chr1_2:4690203-4690222 | None:intergenic | 60.0% | |
| ATCGGAGAGGGTTTGTGCGG+CGG | + | chr1_2:4690215-4690234 | None:intergenic | 60.0% | |
| !! | CGGAGTTGGTGTCATCGGAG+AGG | + | chr1_2:4690228-4690247 | None:intergenic | 60.0% |
| !! | CAGCGGTGTCGACGACTTGT+CGG | + | chr1_2:4690264-4690283 | None:intergenic | 60.0% |
| CGTCACTCCCGTCAAGGATC+AGG | - | chr1_2:4690600-4690619 | Msa0050690:CDS | 60.0% | |
| CTGACACTACTCCCCCAGAC+TGG | + | chr1_2:4691982-4692001 | None:intergenic | 60.0% | |
| ATGGGGCCAGAATTGGGGTG+AGG | - | chr1_2:4692462-4692481 | Msa0050690:CDS | 60.0% | |
| GGCCAGAATTGGGGTGAGGA+AGG | - | chr1_2:4692466-4692485 | Msa0050690:CDS | 60.0% | |
| CGGTTGCAACAGCGGCGAAG+AGG | + | chr1_2:4690195-4690214 | None:intergenic | 65.0% | |
| GGAGCCTTCTGAGCGTGAGC+CGG | + | chr1_2:4690526-4690545 | None:intergenic | 65.0% | |
| ! | AGGTGCCGTCACTCCCGTCA+AGG | - | chr1_2:4690594-4690613 | Msa0050690:CDS | 65.0% |
| CGGTTGCAACAGCGGCGAAG+AGG | + | chr1_2:4690195-4690214 | None:intergenic | 65.0% | |
| GGAGCCTTCTGAGCGTGAGC+CGG | + | chr1_2:4690526-4690545 | None:intergenic | 65.0% | |
| ! | AGGTGCCGTCACTCCCGTCA+AGG | - | chr1_2:4690594-4690613 | Msa0050690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 4690163 | 4692567 | 4690163 | ID=Msa0050690;Name=Msa0050690 |
| chr1_2 | mRNA | 4690163 | 4692567 | 4690163 | ID=Msa0050690-mRNA-1;Parent=Msa0050690;Name=Msa0050690-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|364 |
| chr1_2 | exon | 4692109 | 4692567 | 4692109 | ID=Msa0050690-mRNA-1:exon:1312;Parent=Msa0050690-mRNA-1 |
| chr1_2 | exon | 4691864 | 4691983 | 4691864 | ID=Msa0050690-mRNA-1:exon:1311;Parent=Msa0050690-mRNA-1 |
| chr1_2 | exon | 4690585 | 4690828 | 4690585 | ID=Msa0050690-mRNA-1:exon:1310;Parent=Msa0050690-mRNA-1 |
| chr1_2 | exon | 4690163 | 4690434 | 4690163 | ID=Msa0050690-mRNA-1:exon:1309;Parent=Msa0050690-mRNA-1 |
| chr1_2 | CDS | 4692109 | 4692567 | 4692109 | ID=Msa0050690-mRNA-1:cds;Parent=Msa0050690-mRNA-1 |
| chr1_2 | CDS | 4691864 | 4691983 | 4691864 | ID=Msa0050690-mRNA-1:cds;Parent=Msa0050690-mRNA-1 |
| chr1_2 | CDS | 4690585 | 4690828 | 4690585 | ID=Msa0050690-mRNA-1:cds;Parent=Msa0050690-mRNA-1 |
| chr1_2 | CDS | 4690163 | 4690434 | 4690163 | ID=Msa0050690-mRNA-1:cds;Parent=Msa0050690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
