AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0717380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717380 MtrunA17_Chr5g0405281 100.000 258 0 0 1 258 1 258 0.0 527
Msa0717380 MtrunA17_Chr7g0247311 95.736 258 11 0 1 258 1 258 0.0 508
Msa0717380 MtrunA17_Chr3g0094604 33.333 186 112 4 29 214 49 222 1.45e-23 96.3
Msa0717380 MtrunA17_CPg0492514 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0717380 MtrunA17_Chr3g0090924 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0717380 MtrunA17_Chr4g0015984 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0717380 MtrunA17_Chr4g0017184 33.333 186 112 4 29 214 56 229 9.52e-23 94.0
Msa0717380 MtrunA17_Chr2g0283311 39.316 117 65 3 98 214 51 161 4.42e-18 80.1
Msa0717380 MtrunA17_Chr4g0024444 29.078 141 93 2 29 169 49 182 7.58e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717380 AT4G36130.1 92.636 258 19 0 1 258 1 258 1.25e-180 496
Msa0717380 AT2G18020.1 91.860 258 21 0 1 258 1 258 7.56e-175 482
Msa0717380 AT3G51190.1 84.519 239 36 1 1 238 1 239 5.84e-152 424
Msa0717380 ATCG01310.1 32.632 190 108 4 29 214 60 233 2.27e-24 99.0
Msa0717380 ATCG00830.1 32.632 190 108 4 29 214 60 233 2.27e-24 99.0
Msa0717380 AT2G44065.3 36.691 139 80 3 97 234 58 189 7.53e-18 80.1
Msa0717380 AT2G44065.1 36.691 139 80 3 97 234 58 189 7.53e-18 80.1
Msa0717380 AT2G44065.2 36.691 139 80 3 97 234 58 189 7.53e-18 80.1

Find 113 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGCTTACCACAAATTT+AGG 0.139039 5_1:-11164764 Msa0717380:CDS
TTCTGTTTCTTATATCTAAA+AGG 0.141313 5_1:+11166224 None:intergenic
GAGTCGTAGGTTTAGGTTTC+CGG 0.212094 5_1:-11166446 Msa0717380:five_prime_UTR
GCGAGATGGGTAGGGTTATC+AGG 0.218220 5_1:-11166424 Msa0717380:exon
GACTATTTGAAGAGATTCTT+AGG 0.233323 5_1:-11164527 Msa0717380:three_prime_UTR
ACCACCGTGCGGCGATGATA+TGG 0.271441 5_1:+11166471 None:intergenic
AAAGAATACCCAAGTAGTTT+TGG 0.279478 5_1:+11164454 None:intergenic
GCTAGTGGTGCACCGCGACC+TGG 0.291779 5_1:+11166266 None:intergenic
TTCATAGTTTGCCTTCGTTC+CGG 0.294468 5_1:-11164355 Msa0717380:three_prime_UTR
TCATAGTTTGCCTTCGTTCC+GGG 0.320605 5_1:-11164354 Msa0717380:three_prime_UTR
TTCAGAGAAGTTAGGGTTTG+AGG 0.339397 5_1:+11166501 None:intergenic
GCAGGATTCATACCTTGTTC+AGG 0.343927 5_1:-11164231 Msa0717380:three_prime_UTR
TAATGCTTACCACAAATTTA+GGG 0.348170 5_1:-11164763 Msa0717380:CDS
AACCTAGAGGTATCATTATC+AGG 0.354338 5_1:+11165999 None:intergenic
GGCCTTTGCGATGGTGGGTG+TGG 0.359733 5_1:+11166366 None:intergenic
AGCTGCTTCTGCTGCTGCTA+AGG 0.362731 5_1:-11164565 Msa0717380:CDS
TCCTCTTCACCCTAAATTTG+TGG 0.369145 5_1:+11164754 None:intergenic
CGTTTCCGCAGTCTCGATTT+CGG 0.389930 5_1:-11166338 Msa0717380:CDS
GAAATGAGTTCAGAGAAGTT+AGG 0.390313 5_1:+11166493 None:intergenic
TGAAATTTATTTGTTTAGGT+TGG 0.391477 5_1:-11164270 Msa0717380:three_prime_UTR
GCTATGATTGGGCAAGTTGC+AGG 0.391634 5_1:-11164822 Msa0717380:CDS
GTGGTTAGAGTCGTAGGTTT+AGG 0.393021 5_1:-11166453 Msa0717380:five_prime_UTR
CTAAGAGAACTGGTCGTCTC+AGG 0.393643 5_1:-11164593 Msa0717380:CDS
AAATGAGTTCAGAGAAGTTA+GGG 0.407150 5_1:+11166494 None:intergenic
TCATATAAATATGGGGCAAA+AGG 0.412074 5_1:+11164425 None:intergenic
TTAGGGTGAAGAGGAATTGC+TGG 0.413541 5_1:-11164746 Msa0717380:CDS
TTTCGTTCACTACTCCTTTG+AGG 0.415458 5_1:+11166300 None:intergenic
CTGGACAGTTTATTTATTGT+GGG 0.419100 5_1:-11166169 Msa0717380:CDS
GCCTTTGCGATGGTGGGTGT+GGG 0.420149 5_1:+11166367 None:intergenic
TTACAAATAACCGCACCTTC+AGG 0.420706 5_1:+11166098 None:intergenic
CCTCCATGAGGATGTTCAAC+TGG 0.422258 5_1:+11164696 None:intergenic
GTTGTGAAATTTATTTGTTT+AGG 0.426123 5_1:-11164274 Msa0717380:three_prime_UTR
GACAGGATTAAGCTACCATC+AGG 0.430549 5_1:-11164876 Msa0717380:intron
TCTGTTTCTTATATCTAAAA+GGG 0.435806 5_1:+11166225 None:intergenic
GTTAGGCGTGATGCTCCTCC+TGG 0.436286 5_1:-11164639 Msa0717380:CDS
CTCATTGCTGCTAAGAGAAC+TGG 0.437152 5_1:-11164603 Msa0717380:CDS
TCGAGACTGCGGAAACGTGC+TGG 0.440209 5_1:+11166344 None:intergenic
ACTGGACAGTTTATTTATTG+TGG 0.444957 5_1:-11166170 Msa0717380:CDS
AACTGAGAAGCCAATGCTTA+AGG 0.445753 5_1:-11164790 Msa0717380:CDS
GGAGGTAACCACCAGCATAT+TGG 0.446084 5_1:-11164675 Msa0717380:CDS
TTGTCTGTTCCAAAACTACT+TGG 0.449180 5_1:-11164463 Msa0717380:three_prime_UTR
GGTTTAGGTTTCCGGCGAGA+TGG 0.456405 5_1:-11166438 Msa0717380:exon
CTCGATTTCGGTGAAAGAAA+CGG 0.463830 5_1:-11166326 Msa0717380:CDS
GCATTACCAGCCTTAAGCAT+TGG 0.465748 5_1:+11164780 None:intergenic
ACTATTTGAAGAGATTCTTA+GGG 0.466482 5_1:-11164526 Msa0717380:three_prime_UTR
AGTGAGTGCAGAGCTATGAT+TGG 0.480414 5_1:-11164834 Msa0717380:CDS
GTTTAGGTTTCCGGCGAGAT+GGG 0.481065 5_1:-11166437 Msa0717380:exon
TGCTGGGCCTTTGCGATGGT+GGG 0.484311 5_1:+11166361 None:intergenic
AGGTTTCCGGCGAGATGGGT+AGG 0.490187 5_1:-11166433 Msa0717380:exon
TTCATACCTTGTTCAGGGAG+TGG 0.490403 5_1:-11164225 Msa0717380:three_prime_UTR
ATAGTACTTCTGTAGTGAAA+AGG 0.490501 5_1:-11164175 Msa0717380:three_prime_UTR
CGAGACTGCGGAAACGTGCT+GGG 0.490564 5_1:+11166345 None:intergenic
TTGGACATGCTAGTACTGTT+AGG 0.490772 5_1:-11164656 Msa0717380:CDS
CTAGTGGTGCACCGCGACCT+GGG 0.492115 5_1:+11166267 None:intergenic
GTGCTGGGCCTTTGCGATGG+TGG 0.492579 5_1:+11166360 None:intergenic
ATCATAGCTCTGCACTCACT+TGG 0.492967 5_1:+11164837 None:intergenic
CAGGATTCATACCTTGTTCA+GGG 0.494458 5_1:-11164230 Msa0717380:three_prime_UTR
ACAATCTTCTTTGCCCCTGA+TGG 0.501695 5_1:+11164861 None:intergenic
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 5_1:-11164627 Msa0717380:CDS
ATCATTCACGACCCAGGTCG+CGG 0.520973 5_1:-11166278 Msa0717380:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 5_1:+11164621 None:intergenic
GAAGAGGAATTGCTGGCCTA+AGG 0.522177 5_1:-11164739 Msa0717380:CDS
AATTGCTGGCCTAAGGTTCG+TGG 0.527466 5_1:-11164732 Msa0717380:CDS
ATTGGGCAAGTTGCAGGTGG+AGG 0.539757 5_1:-11164816 Msa0717380:CDS
GTGAGTGCAGAGCTATGATT+GGG 0.540155 5_1:-11164833 Msa0717380:CDS
GGTTTCCGGCGAGATGGGTA+GGG 0.540978 5_1:-11166432 Msa0717380:exon
TACTAGCATGTCCAATATGC+TGG 0.543123 5_1:+11164664 None:intergenic
GTGGGTGTGGGACTTGAAAA+CGG 0.548294 5_1:+11166379 None:intergenic
GAGAAGCCAATGCTTAAGGC+TGG 0.549710 5_1:-11164786 Msa0717380:CDS
TCTGTAGTGAAAAGGTTACA+AGG 0.550887 5_1:-11164167 Msa0717380:three_prime_UTR
TGATGCTCCTCCTGGACAGA+AGG 0.551156 5_1:-11164631 Msa0717380:CDS
ACCACAAATTTAGGGTGAAG+AGG 0.551702 5_1:-11164755 Msa0717380:CDS
TCTTATATCTAAAAGGGTGT+CGG 0.552820 5_1:+11166231 None:intergenic
AGGGCACAACGTAAAGGAGC+AGG 0.552983 5_1:-11166404 Msa0717380:CDS
CGAGATGGGTAGGGTTATCA+GGG 0.554090 5_1:-11166423 Msa0717380:exon
GAAAGAAACGGTTACCTCAA+AGG 0.558738 5_1:-11166314 Msa0717380:CDS
GTTATCAGGGCACAACGTAA+AGG 0.562139 5_1:-11166410 Msa0717380:CDS
CCTTCAGGAATCATCCTCAA+TGG 0.568035 5_1:+11166113 None:intergenic
AACGAAATCATTCACGACCC+AGG 0.570840 5_1:-11166284 Msa0717380:CDS
TAAGAGAACTGGTCGTCTCA+GGG 0.573235 5_1:-11164592 Msa0717380:CDS
TGTCTGTTCCAAAACTACTT+GGG 0.573527 5_1:-11164462 Msa0717380:three_prime_UTR
TCGCGGTGCACCACTAGCTA+AGG 0.577052 5_1:-11166261 Msa0717380:CDS
CGCACGGTGGTTAGAGTCGT+AGG 0.577340 5_1:-11166459 Msa0717380:five_prime_UTR
AATCCAGTTGAACATCCTCA+TGG 0.581222 5_1:-11164699 Msa0717380:CDS
AACGTGCTGGGCCTTTGCGA+TGG 0.587555 5_1:+11166357 None:intergenic
GCTGCTGAGGGACTTTACAC+TGG 0.588705 5_1:-11166188 Msa0717380:CDS
TGTAATGTTGAACATCATGT+TGG 0.589500 5_1:-11166080 Msa0717380:CDS
CTGGCCTAAGGTTCGTGGTG+TGG 0.593495 5_1:-11164727 Msa0717380:CDS
ATAGCCACACCACGAACCTT+AGG 0.594313 5_1:+11164723 None:intergenic
TCCCACACCCACCATCGCAA+AGG 0.598343 5_1:-11166368 Msa0717380:CDS
CAGTAGAAATAGATGAAACC+CGG 0.602486 5_1:+11164336 None:intergenic
CCATTGAGGATGATTCCTGA+AGG 0.603950 5_1:-11166113 Msa0717380:CDS
ACAGGATTAAGCTACCATCA+GGG 0.606815 5_1:-11164875 Msa0717380:intron
GTTGAACATCCTCATGGAGG+AGG 0.607255 5_1:-11164693 Msa0717380:CDS
AAACAACCACTCCCTGAACA+AGG 0.624339 5_1:+11164219 None:intergenic
ATCCTGATAATGATACCTCT+AGG 0.627712 5_1:-11166001 Msa0717380:intron
ATGATTGGGCAAGTTGCAGG+TGG 0.627869 5_1:-11164819 Msa0717380:CDS
ATAGATGAAACCCGGAACGA+AGG 0.629870 5_1:+11164344 None:intergenic
CTGTAGTGAAAAGGTTACAA+GGG 0.630288 5_1:-11164166 Msa0717380:three_prime_UTR
GAGGATGATTCCTGAAGGTG+CGG 0.634290 5_1:-11166108 Msa0717380:CDS
CAGGATTAAGCTACCATCAG+GGG 0.634909 5_1:-11164874 Msa0717380:CDS
GAACATCATGTTGGTGATCG+TGG 0.646474 5_1:-11166071 Msa0717380:CDS
GATAACCCTACCCATCTCGC+CGG 0.648671 5_1:+11166427 None:intergenic
TCCATATCATCGCCGCACGG+TGG 0.651259 5_1:-11166472 Msa0717380:five_prime_UTR
TTTCACCGAAATCGAGACTG+CGG 0.661724 5_1:+11166333 None:intergenic
TAGCATGTCCAATATGCTGG+TGG 0.670638 5_1:+11164667 None:intergenic
CGGAATGTGACCTTAGCTAG+TGG 0.672073 5_1:+11166251 None:intergenic
AAGAGAACTGGTCGTCTCAG+GGG 0.684178 5_1:-11164591 Msa0717380:CDS
TGGTGGTTACCTCCTCCATG+AGG 0.690890 5_1:+11164684 None:intergenic
AGACCAACCTTCTGTCCAGG+AGG 0.695738 5_1:+11164624 None:intergenic
ATTTCCATATCATCGCCGCA+CGG 0.725893 5_1:-11166475 Msa0717380:five_prime_UTR
CCAGTTGAACATCCTCATGG+AGG 0.726090 5_1:-11164696 Msa0717380:CDS
CTACGACTCTAACCACCGTG+CGG 0.804232 5_1:+11166460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAATATGTTAATTAAAAA+TGG + chr5_1:11164695-11164714 None:intergenic 10.0%
!! AAAAATTTCATATAAATATG+GGG + chr5_1:11166221-11166240 None:intergenic 10.0%
!! TACAATATGTTAATTAAAAA+TGG + chr5_1:11164695-11164714 None:intergenic 10.0%
!! AAAAATTTCATATAAATATG+GGG + chr5_1:11166221-11166240 None:intergenic 10.0%
!! AAATATACAAATATGATTTG+TGG - chr5_1:11164745-11164764 Msa0717380:CDS 15.0%
!! TATAAAAACTTGAATTATGT+GGG - chr5_1:11165588-11165607 Msa0717380:intron 15.0%
!!! ATGAAATTTTTAAATGACAA+TGG - chr5_1:11166230-11166249 Msa0717380:CDS 15.0%
!! AAATATACAAATATGATTTG+TGG - chr5_1:11164745-11164764 Msa0717380:CDS 15.0%
!! TATAAAAACTTGAATTATGT+GGG - chr5_1:11165588-11165607 Msa0717380:intron 15.0%
!!! ATGAAATTTTTAAATGACAA+TGG - chr5_1:11166230-11166249 Msa0717380:CDS 15.0%
!!! TCTGTTTCTTATATCTAAAA+GGG + chr5_1:11164414-11164433 None:intergenic 20.0%
!!! TTCTGTTTCTTATATCTAAA+AGG + chr5_1:11164415-11164434 None:intergenic 20.0%
!! TAACACTTATAGTAGAAAAA+TGG - chr5_1:11164906-11164925 Msa0717380:intron 20.0%
!! AGCTTAAAAAATTAATGATG+TGG - chr5_1:11165298-11165317 Msa0717380:intron 20.0%
!! GTATAAAAACTTGAATTATG+TGG - chr5_1:11165587-11165606 Msa0717380:intron 20.0%
!!! TATTTAACTTTTACTGATGA+TGG - chr5_1:11165721-11165740 Msa0717380:intron 20.0%
!!! ATTTAACTTTTACTGATGAT+GGG - chr5_1:11165722-11165741 Msa0717380:intron 20.0%
!! GTTGTGAAATTTATTTGTTT+AGG - chr5_1:11166362-11166381 Msa0717380:CDS 20.0%
!! TGAAATTTATTTGTTTAGGT+TGG - chr5_1:11166366-11166385 Msa0717380:CDS 20.0%
!!! TCTGTTTCTTATATCTAAAA+GGG + chr5_1:11164414-11164433 None:intergenic 20.0%
!!! TTCTGTTTCTTATATCTAAA+AGG + chr5_1:11164415-11164434 None:intergenic 20.0%
!! TAACACTTATAGTAGAAAAA+TGG - chr5_1:11164906-11164925 Msa0717380:intron 20.0%
!! AGCTTAAAAAATTAATGATG+TGG - chr5_1:11165298-11165317 Msa0717380:intron 20.0%
!! GTATAAAAACTTGAATTATG+TGG - chr5_1:11165587-11165606 Msa0717380:intron 20.0%
!!! TATTTAACTTTTACTGATGA+TGG - chr5_1:11165721-11165740 Msa0717380:intron 20.0%
!!! ATTTAACTTTTACTGATGAT+GGG - chr5_1:11165722-11165741 Msa0717380:intron 20.0%
!! GTTGTGAAATTTATTTGTTT+AGG - chr5_1:11166362-11166381 Msa0717380:CDS 20.0%
!! TGAAATTTATTTGTTTAGGT+TGG - chr5_1:11166366-11166385 Msa0717380:CDS 20.0%
! TAGAATTAGAAATGACAAGT+TGG - chr5_1:11164881-11164900 Msa0717380:intron 25.0%
! AATGGATAGAAACTAGAATT+AGG - chr5_1:11164924-11164943 Msa0717380:intron 25.0%
! AAGAGAAACTAGTATTAAGA+AGG - chr5_1:11165055-11165074 Msa0717380:intron 25.0%
!!! TAAGTATGTGTTTGTTTTAG+AGG + chr5_1:11165246-11165265 None:intergenic 25.0%
! TAAAACAAACACATACTTAG+TGG - chr5_1:11165247-11165266 Msa0717380:intron 25.0%
! AAAACAAACACATACTTAGT+GGG - chr5_1:11165248-11165267 Msa0717380:intron 25.0%
! TCATTTATATGTGTGACTAT+CGG + chr5_1:11165448-11165467 None:intergenic 25.0%
! TAATGCTTACCACAAATTTA+GGG - chr5_1:11165873-11165892 Msa0717380:intron 25.0%
! ACTATTTGAAGAGATTCTTA+GGG - chr5_1:11166110-11166129 Msa0717380:CDS 25.0%
! TAGAATTAGAAATGACAAGT+TGG - chr5_1:11164881-11164900 Msa0717380:intron 25.0%
! AATGGATAGAAACTAGAATT+AGG - chr5_1:11164924-11164943 Msa0717380:intron 25.0%
! AAGAGAAACTAGTATTAAGA+AGG - chr5_1:11165055-11165074 Msa0717380:intron 25.0%
!!! TAAGTATGTGTTTGTTTTAG+AGG + chr5_1:11165246-11165265 None:intergenic 25.0%
! TAAAACAAACACATACTTAG+TGG - chr5_1:11165247-11165266 Msa0717380:intron 25.0%
! AAAACAAACACATACTTAGT+GGG - chr5_1:11165248-11165267 Msa0717380:intron 25.0%
! TCATTTATATGTGTGACTAT+CGG + chr5_1:11165448-11165467 None:intergenic 25.0%
! TAATGCTTACCACAAATTTA+GGG - chr5_1:11165873-11165892 Msa0717380:intron 25.0%
! ACTATTTGAAGAGATTCTTA+GGG - chr5_1:11166110-11166129 Msa0717380:CDS 25.0%
AAATGAGTTCAGAGAAGTTA+GGG + chr5_1:11164145-11164164 None:intergenic 30.0%
! TCTTATATCTAAAAGGGTGT+CGG + chr5_1:11164408-11164427 None:intergenic 30.0%
ACTGGACAGTTTATTTATTG+TGG - chr5_1:11164466-11164485 Msa0717380:three_prime_UTR 30.0%
CTGGACAGTTTATTTATTGT+GGG - chr5_1:11164467-11164486 Msa0717380:three_prime_UTR 30.0%
! AAAAAAGCTACTCTTGTTGT+TGG - chr5_1:11164490-11164509 Msa0717380:three_prime_UTR 30.0%
TGTAATGTTGAACATCATGT+TGG - chr5_1:11164556-11164575 Msa0717380:exon 30.0%
AAACTAGAATTAGGTGGTTT+AGG - chr5_1:11164933-11164952 Msa0717380:intron 30.0%
ATGTTAGAAGCTACAATATG+TGG + chr5_1:11165200-11165219 None:intergenic 30.0%
TGTAGCTTCTAACATAATGT+TGG - chr5_1:11165205-11165224 Msa0717380:intron 30.0%
CTCGCAATCAATTATACTAA+GGG + chr5_1:11165526-11165545 None:intergenic 30.0%
TCTCGCAATCAATTATACTA+AGG + chr5_1:11165527-11165546 None:intergenic 30.0%
AAAACTTGAATTATGTGGGA+TGG - chr5_1:11165592-11165611 Msa0717380:intron 30.0%
GTAATGCTTACCACAAATTT+AGG - chr5_1:11165872-11165891 Msa0717380:intron 30.0%
GACTATTTGAAGAGATTCTT+AGG - chr5_1:11166109-11166128 Msa0717380:CDS 30.0%
! AAAGAATACCCAAGTAGTTT+TGG + chr5_1:11166185-11166204 None:intergenic 30.0%
TCATATAAATATGGGGCAAA+AGG + chr5_1:11166214-11166233 None:intergenic 30.0%
!!! TGTTTAGGTTGGATTTTTAG+TGG - chr5_1:11166377-11166396 Msa0717380:CDS 30.0%
ATAGTACTTCTGTAGTGAAA+AGG - chr5_1:11166461-11166480 Msa0717380:five_prime_UTR 30.0%
AAATGAGTTCAGAGAAGTTA+GGG + chr5_1:11164145-11164164 None:intergenic 30.0%
! TCTTATATCTAAAAGGGTGT+CGG + chr5_1:11164408-11164427 None:intergenic 30.0%
ACTGGACAGTTTATTTATTG+TGG - chr5_1:11164466-11164485 Msa0717380:three_prime_UTR 30.0%
CTGGACAGTTTATTTATTGT+GGG - chr5_1:11164467-11164486 Msa0717380:three_prime_UTR 30.0%
! AAAAAAGCTACTCTTGTTGT+TGG - chr5_1:11164490-11164509 Msa0717380:three_prime_UTR 30.0%
TGTAATGTTGAACATCATGT+TGG - chr5_1:11164556-11164575 Msa0717380:exon 30.0%
AAACTAGAATTAGGTGGTTT+AGG - chr5_1:11164933-11164952 Msa0717380:intron 30.0%
ATGTTAGAAGCTACAATATG+TGG + chr5_1:11165200-11165219 None:intergenic 30.0%
TGTAGCTTCTAACATAATGT+TGG - chr5_1:11165205-11165224 Msa0717380:intron 30.0%
CTCGCAATCAATTATACTAA+GGG + chr5_1:11165526-11165545 None:intergenic 30.0%
TCTCGCAATCAATTATACTA+AGG + chr5_1:11165527-11165546 None:intergenic 30.0%
AAAACTTGAATTATGTGGGA+TGG - chr5_1:11165592-11165611 Msa0717380:intron 30.0%
GTAATGCTTACCACAAATTT+AGG - chr5_1:11165872-11165891 Msa0717380:intron 30.0%
GACTATTTGAAGAGATTCTT+AGG - chr5_1:11166109-11166128 Msa0717380:CDS 30.0%
! AAAGAATACCCAAGTAGTTT+TGG + chr5_1:11166185-11166204 None:intergenic 30.0%
TCATATAAATATGGGGCAAA+AGG + chr5_1:11166214-11166233 None:intergenic 30.0%
!!! TGTTTAGGTTGGATTTTTAG+TGG - chr5_1:11166377-11166396 Msa0717380:CDS 30.0%
ATAGTACTTCTGTAGTGAAA+AGG - chr5_1:11166461-11166480 Msa0717380:five_prime_UTR 30.0%
GAAATGAGTTCAGAGAAGTT+AGG + chr5_1:11164146-11164165 None:intergenic 35.0%
! TTGGAAATGTTTTGCCATTG+AGG - chr5_1:11164509-11164528 Msa0717380:three_prime_UTR 35.0%
! ATCCTGATAATGATACCTCT+AGG - chr5_1:11164635-11164654 Msa0717380:CDS 35.0%
!! AACCTAGAGGTATCATTATC+AGG + chr5_1:11164640-11164659 None:intergenic 35.0%
GGATAGAAACTAGAATTAGG+TGG - chr5_1:11164927-11164946 Msa0717380:intron 35.0%
TAGTCTACTCTCCTTAATAC+AGG + chr5_1:11164983-11165002 None:intergenic 35.0%
AACACATACTTAGTGGGATA+AGG - chr5_1:11165254-11165273 Msa0717380:intron 35.0%
CATATGCACGAAAGTTTATG+CGG - chr5_1:11165404-11165423 Msa0717380:intron 35.0%
!!! GGTGTTGATGATTTTTTGAC+AGG - chr5_1:11165743-11165762 Msa0717380:intron 35.0%
!!! AAGTAGTTTTGGAACAGACA+AGG + chr5_1:11166174-11166193 None:intergenic 35.0%
TTGTCTGTTCCAAAACTACT+TGG - chr5_1:11166173-11166192 Msa0717380:CDS 35.0%
TGTCTGTTCCAAAACTACTT+GGG - chr5_1:11166174-11166193 Msa0717380:CDS 35.0%
CAGTAGAAATAGATGAAACC+CGG + chr5_1:11166303-11166322 None:intergenic 35.0%
!! GTTGTTTTACTACGTCGATT+CGG - chr5_1:11166433-11166452 Msa0717380:exon 35.0%
TCTGTAGTGAAAAGGTTACA+AGG - chr5_1:11166469-11166488 Msa0717380:five_prime_UTR 35.0%
CTGTAGTGAAAAGGTTACAA+GGG - chr5_1:11166470-11166489 Msa0717380:five_prime_UTR 35.0%
GAAATGAGTTCAGAGAAGTT+AGG + chr5_1:11164146-11164165 None:intergenic 35.0%
! TTGGAAATGTTTTGCCATTG+AGG - chr5_1:11164509-11164528 Msa0717380:three_prime_UTR 35.0%
! ATCCTGATAATGATACCTCT+AGG - chr5_1:11164635-11164654 Msa0717380:CDS 35.0%
!! AACCTAGAGGTATCATTATC+AGG + chr5_1:11164640-11164659 None:intergenic 35.0%
GGATAGAAACTAGAATTAGG+TGG - chr5_1:11164927-11164946 Msa0717380:intron 35.0%
TAGTCTACTCTCCTTAATAC+AGG + chr5_1:11164983-11165002 None:intergenic 35.0%
AACACATACTTAGTGGGATA+AGG - chr5_1:11165254-11165273 Msa0717380:intron 35.0%
CATATGCACGAAAGTTTATG+CGG - chr5_1:11165404-11165423 Msa0717380:intron 35.0%
!!! GGTGTTGATGATTTTTTGAC+AGG - chr5_1:11165743-11165762 Msa0717380:intron 35.0%
!!! AAGTAGTTTTGGAACAGACA+AGG + chr5_1:11166174-11166193 None:intergenic 35.0%
TTGTCTGTTCCAAAACTACT+TGG - chr5_1:11166173-11166192 Msa0717380:CDS 35.0%
TGTCTGTTCCAAAACTACTT+GGG - chr5_1:11166174-11166193 Msa0717380:CDS 35.0%
CAGTAGAAATAGATGAAACC+CGG + chr5_1:11166303-11166322 None:intergenic 35.0%
!! GTTGTTTTACTACGTCGATT+CGG - chr5_1:11166433-11166452 Msa0717380:exon 35.0%
TCTGTAGTGAAAAGGTTACA+AGG - chr5_1:11166469-11166488 Msa0717380:five_prime_UTR 35.0%
CTGTAGTGAAAAGGTTACAA+GGG - chr5_1:11166470-11166489 Msa0717380:five_prime_UTR 35.0%
CTCGATTTCGGTGAAAGAAA+CGG - chr5_1:11164310-11164329 Msa0717380:three_prime_UTR 40.0%
GAAAGAAACGGTTACCTCAA+AGG - chr5_1:11164322-11164341 Msa0717380:three_prime_UTR 40.0%
TTTCGTTCACTACTCCTTTG+AGG + chr5_1:11164339-11164358 None:intergenic 40.0%
TTACAAATAACCGCACCTTC+AGG + chr5_1:11164541-11164560 None:intergenic 40.0%
ATGAGAGAGAACAAACCTAG+AGG + chr5_1:11164653-11164672 None:intergenic 40.0%
AAGGAGAGTAGACTAGATGA+AGG - chr5_1:11164988-11165007 Msa0717380:intron 40.0%
AGGAGAGTAGACTAGATGAA+GGG - chr5_1:11164989-11165008 Msa0717380:intron 40.0%
AAGGGGAGTTAAATCACTTG+AGG - chr5_1:11165007-11165026 Msa0717380:intron 40.0%
GGAGTTAAATCACTTGAGGT+AGG - chr5_1:11165011-11165030 Msa0717380:intron 40.0%
AAATGGATACAGACATGAGG+TGG + chr5_1:11165158-11165177 None:intergenic 40.0%
GTGAAATGGATACAGACATG+AGG + chr5_1:11165161-11165180 None:intergenic 40.0%
TATCCATTTCACCGCAGAAA+TGG - chr5_1:11165169-11165188 Msa0717380:intron 40.0%
ACATAATGTTGGTCCACGTT+TGG - chr5_1:11165216-11165235 Msa0717380:intron 40.0%
CATAATGTTGGTCCACGTTT+GGG - chr5_1:11165217-11165236 Msa0717380:intron 40.0%
ATACTTAGTGGGATAAGGCT+TGG - chr5_1:11165259-11165278 Msa0717380:intron 40.0%
CTTATTGCACTTCTGATGCA+TGG - chr5_1:11165492-11165511 Msa0717380:intron 40.0%
TGAATTATGTGGGATGGTGA+TGG - chr5_1:11165598-11165617 Msa0717380:intron 40.0%
ACAGGATTAAGCTACCATCA+GGG - chr5_1:11165761-11165780 Msa0717380:intron 40.0%
AACTGAGAAGCCAATGCTTA+AGG - chr5_1:11165846-11165865 Msa0717380:intron 40.0%
! ACCACAAATTTAGGGTGAAG+AGG - chr5_1:11165881-11165900 Msa0717380:intron 40.0%
TCCTCTTCACCCTAAATTTG+TGG + chr5_1:11165885-11165904 None:intergenic 40.0%
AATCCAGTTGAACATCCTCA+TGG - chr5_1:11165937-11165956 Msa0717380:intron 40.0%
TACTAGCATGTCCAATATGC+TGG + chr5_1:11165975-11165994 None:intergenic 40.0%
TTGGACATGCTAGTACTGTT+AGG - chr5_1:11165980-11165999 Msa0717380:intron 40.0%
! TTCATAGTTTGCCTTCGTTC+CGG - chr5_1:11166281-11166300 Msa0717380:CDS 40.0%
!!! GGATTTTTAGTGGTAAGTGC+AGG - chr5_1:11166387-11166406 Msa0717380:CDS 40.0%
CAGGATTCATACCTTGTTCA+GGG - chr5_1:11166406-11166425 Msa0717380:CDS 40.0%
CTCGATTTCGGTGAAAGAAA+CGG - chr5_1:11164310-11164329 Msa0717380:three_prime_UTR 40.0%
GAAAGAAACGGTTACCTCAA+AGG - chr5_1:11164322-11164341 Msa0717380:three_prime_UTR 40.0%
TTTCGTTCACTACTCCTTTG+AGG + chr5_1:11164339-11164358 None:intergenic 40.0%
TTACAAATAACCGCACCTTC+AGG + chr5_1:11164541-11164560 None:intergenic 40.0%
ATGAGAGAGAACAAACCTAG+AGG + chr5_1:11164653-11164672 None:intergenic 40.0%
AAGGAGAGTAGACTAGATGA+AGG - chr5_1:11164988-11165007 Msa0717380:intron 40.0%
AGGAGAGTAGACTAGATGAA+GGG - chr5_1:11164989-11165008 Msa0717380:intron 40.0%
AAGGGGAGTTAAATCACTTG+AGG - chr5_1:11165007-11165026 Msa0717380:intron 40.0%
GGAGTTAAATCACTTGAGGT+AGG - chr5_1:11165011-11165030 Msa0717380:intron 40.0%
AAATGGATACAGACATGAGG+TGG + chr5_1:11165158-11165177 None:intergenic 40.0%
GTGAAATGGATACAGACATG+AGG + chr5_1:11165161-11165180 None:intergenic 40.0%
TATCCATTTCACCGCAGAAA+TGG - chr5_1:11165169-11165188 Msa0717380:intron 40.0%
ACATAATGTTGGTCCACGTT+TGG - chr5_1:11165216-11165235 Msa0717380:intron 40.0%
CATAATGTTGGTCCACGTTT+GGG - chr5_1:11165217-11165236 Msa0717380:intron 40.0%
ATACTTAGTGGGATAAGGCT+TGG - chr5_1:11165259-11165278 Msa0717380:intron 40.0%
CTTATTGCACTTCTGATGCA+TGG - chr5_1:11165492-11165511 Msa0717380:intron 40.0%
TGAATTATGTGGGATGGTGA+TGG - chr5_1:11165598-11165617 Msa0717380:intron 40.0%
ACAGGATTAAGCTACCATCA+GGG - chr5_1:11165761-11165780 Msa0717380:intron 40.0%
AACTGAGAAGCCAATGCTTA+AGG - chr5_1:11165846-11165865 Msa0717380:intron 40.0%
! ACCACAAATTTAGGGTGAAG+AGG - chr5_1:11165881-11165900 Msa0717380:intron 40.0%
TCCTCTTCACCCTAAATTTG+TGG + chr5_1:11165885-11165904 None:intergenic 40.0%
AATCCAGTTGAACATCCTCA+TGG - chr5_1:11165937-11165956 Msa0717380:intron 40.0%
TACTAGCATGTCCAATATGC+TGG + chr5_1:11165975-11165994 None:intergenic 40.0%
TTGGACATGCTAGTACTGTT+AGG - chr5_1:11165980-11165999 Msa0717380:intron 40.0%
! TTCATAGTTTGCCTTCGTTC+CGG - chr5_1:11166281-11166300 Msa0717380:CDS 40.0%
!!! GGATTTTTAGTGGTAAGTGC+AGG - chr5_1:11166387-11166406 Msa0717380:CDS 40.0%
CAGGATTCATACCTTGTTCA+GGG - chr5_1:11166406-11166425 Msa0717380:CDS 40.0%
ATTTCCATATCATCGCCGCA+CGG - chr5_1:11164161-11164180 Msa0717380:three_prime_UTR 45.0%
GTGGTTAGAGTCGTAGGTTT+AGG - chr5_1:11164183-11164202 Msa0717380:three_prime_UTR 45.0%
! GAGTCGTAGGTTTAGGTTTC+CGG - chr5_1:11164190-11164209 Msa0717380:three_prime_UTR 45.0%
GTTATCAGGGCACAACGTAA+AGG - chr5_1:11164226-11164245 Msa0717380:three_prime_UTR 45.0%
TTTCACCGAAATCGAGACTG+CGG + chr5_1:11164306-11164325 None:intergenic 45.0%
AACGAAATCATTCACGACCC+AGG - chr5_1:11164352-11164371 Msa0717380:three_prime_UTR 45.0%
CCTTCAGGAATCATCCTCAA+TGG + chr5_1:11164526-11164545 None:intergenic 45.0%
CCATTGAGGATGATTCCTGA+AGG - chr5_1:11164523-11164542 Msa0717380:three_prime_UTR 45.0%
!! GAACATCATGTTGGTGATCG+TGG - chr5_1:11164565-11164584 Msa0717380:CDS 45.0%
GACGCATGGAACCTGTATTA+AGG - chr5_1:11164969-11164988 Msa0717380:intron 45.0%
GGAGAGTAGACTAGATGAAG+GGG - chr5_1:11164990-11165009 Msa0717380:intron 45.0%
TCTCCATTTCTGCGGTGAAA+TGG + chr5_1:11165175-11165194 None:intergenic 45.0%
ATGTGGCTTCTCCATTTCTG+CGG + chr5_1:11165183-11165202 None:intergenic 45.0%
!! TTTTAGAGGCTTCCCAAACG+TGG + chr5_1:11165232-11165251 None:intergenic 45.0%
GACAGGATTAAGCTACCATC+AGG - chr5_1:11165760-11165779 Msa0717380:intron 45.0%
CAGGATTAAGCTACCATCAG+GGG - chr5_1:11165762-11165781 Msa0717380:intron 45.0%
ACAATCTTCTTTGCCCCTGA+TGG + chr5_1:11165778-11165797 None:intergenic 45.0%
! ATCATAGCTCTGCACTCACT+TGG + chr5_1:11165802-11165821 None:intergenic 45.0%
AGTGAGTGCAGAGCTATGAT+TGG - chr5_1:11165802-11165821 Msa0717380:intron 45.0%
GTGAGTGCAGAGCTATGATT+GGG - chr5_1:11165803-11165822 Msa0717380:intron 45.0%
GCATTACCAGCCTTAAGCAT+TGG + chr5_1:11165859-11165878 None:intergenic 45.0%
TTAGGGTGAAGAGGAATTGC+TGG - chr5_1:11165890-11165909 Msa0717380:intron 45.0%
TAGCATGTCCAATATGCTGG+TGG + chr5_1:11165972-11165991 None:intergenic 45.0%
CTCATTGCTGCTAAGAGAAC+TGG - chr5_1:11166033-11166052 Msa0717380:CDS 45.0%
TAAGAGAACTGGTCGTCTCA+GGG - chr5_1:11166044-11166063 Msa0717380:CDS 45.0%
! TCATAGTTTGCCTTCGTTCC+GGG - chr5_1:11166282-11166301 Msa0717380:CDS 45.0%
ATAGATGAAACCCGGAACGA+AGG + chr5_1:11166295-11166314 None:intergenic 45.0%
GCAGGATTCATACCTTGTTC+AGG - chr5_1:11166405-11166424 Msa0717380:CDS 45.0%
TTCATACCTTGTTCAGGGAG+TGG - chr5_1:11166411-11166430 Msa0717380:CDS 45.0%
AAACAACCACTCCCTGAACA+AGG + chr5_1:11166420-11166439 None:intergenic 45.0%
ATTTCCATATCATCGCCGCA+CGG - chr5_1:11164161-11164180 Msa0717380:three_prime_UTR 45.0%
GTGGTTAGAGTCGTAGGTTT+AGG - chr5_1:11164183-11164202 Msa0717380:three_prime_UTR 45.0%
! GAGTCGTAGGTTTAGGTTTC+CGG - chr5_1:11164190-11164209 Msa0717380:three_prime_UTR 45.0%
GTTATCAGGGCACAACGTAA+AGG - chr5_1:11164226-11164245 Msa0717380:three_prime_UTR 45.0%
TTTCACCGAAATCGAGACTG+CGG + chr5_1:11164306-11164325 None:intergenic 45.0%
AACGAAATCATTCACGACCC+AGG - chr5_1:11164352-11164371 Msa0717380:three_prime_UTR 45.0%
CCTTCAGGAATCATCCTCAA+TGG + chr5_1:11164526-11164545 None:intergenic 45.0%
CCATTGAGGATGATTCCTGA+AGG - chr5_1:11164523-11164542 Msa0717380:three_prime_UTR 45.0%
!! GAACATCATGTTGGTGATCG+TGG - chr5_1:11164565-11164584 Msa0717380:CDS 45.0%
GACGCATGGAACCTGTATTA+AGG - chr5_1:11164969-11164988 Msa0717380:intron 45.0%
GGAGAGTAGACTAGATGAAG+GGG - chr5_1:11164990-11165009 Msa0717380:intron 45.0%
TCTCCATTTCTGCGGTGAAA+TGG + chr5_1:11165175-11165194 None:intergenic 45.0%
ATGTGGCTTCTCCATTTCTG+CGG + chr5_1:11165183-11165202 None:intergenic 45.0%
!! TTTTAGAGGCTTCCCAAACG+TGG + chr5_1:11165232-11165251 None:intergenic 45.0%
GACAGGATTAAGCTACCATC+AGG - chr5_1:11165760-11165779 Msa0717380:intron 45.0%
CAGGATTAAGCTACCATCAG+GGG - chr5_1:11165762-11165781 Msa0717380:intron 45.0%
ACAATCTTCTTTGCCCCTGA+TGG + chr5_1:11165778-11165797 None:intergenic 45.0%
! ATCATAGCTCTGCACTCACT+TGG + chr5_1:11165802-11165821 None:intergenic 45.0%
AGTGAGTGCAGAGCTATGAT+TGG - chr5_1:11165802-11165821 Msa0717380:intron 45.0%
GTGAGTGCAGAGCTATGATT+GGG - chr5_1:11165803-11165822 Msa0717380:intron 45.0%
GCATTACCAGCCTTAAGCAT+TGG + chr5_1:11165859-11165878 None:intergenic 45.0%
TTAGGGTGAAGAGGAATTGC+TGG - chr5_1:11165890-11165909 Msa0717380:intron 45.0%
TAGCATGTCCAATATGCTGG+TGG + chr5_1:11165972-11165991 None:intergenic 45.0%
CTCATTGCTGCTAAGAGAAC+TGG - chr5_1:11166033-11166052 Msa0717380:CDS 45.0%
TAAGAGAACTGGTCGTCTCA+GGG - chr5_1:11166044-11166063 Msa0717380:CDS 45.0%
! TCATAGTTTGCCTTCGTTCC+GGG - chr5_1:11166282-11166301 Msa0717380:CDS 45.0%
ATAGATGAAACCCGGAACGA+AGG + chr5_1:11166295-11166314 None:intergenic 45.0%
GCAGGATTCATACCTTGTTC+AGG - chr5_1:11166405-11166424 Msa0717380:CDS 45.0%
TTCATACCTTGTTCAGGGAG+TGG - chr5_1:11166411-11166430 Msa0717380:CDS 45.0%
AAACAACCACTCCCTGAACA+AGG + chr5_1:11166420-11166439 None:intergenic 45.0%
!! TAAAAATTTCATATAAATAT+GGG + chr5_1:11166222-11166241 None:intergenic 5.0%
!! TTAAAAATTTCATATAAATA+TGG + chr5_1:11166223-11166242 None:intergenic 5.0%
!! TAAAAATTTCATATAAATAT+GGG + chr5_1:11166222-11166241 None:intergenic 5.0%
!! TTAAAAATTTCATATAAATA+TGG + chr5_1:11166223-11166242 None:intergenic 5.0%
! GTTTAGGTTTCCGGCGAGAT+GGG - chr5_1:11164199-11164218 Msa0717380:three_prime_UTR 50.0%
CGAGATGGGTAGGGTTATCA+GGG - chr5_1:11164213-11164232 Msa0717380:three_prime_UTR 50.0%
GTGGGTGTGGGACTTGAAAA+CGG + chr5_1:11164260-11164279 None:intergenic 50.0%
CGTTTCCGCAGTCTCGATTT+CGG - chr5_1:11164298-11164317 Msa0717380:three_prime_UTR 50.0%
CGGAATGTGACCTTAGCTAG+TGG + chr5_1:11164388-11164407 None:intergenic 50.0%
! AGAGCTTTTCGTTGCTGCTG+AGG - chr5_1:11164435-11164454 Msa0717380:three_prime_UTR 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr5_1:11164436-11164455 Msa0717380:three_prime_UTR 50.0%
GAGGATGATTCCTGAAGGTG+CGG - chr5_1:11164528-11164547 Msa0717380:three_prime_UTR 50.0%
! GTGATCGTGGTGCTTTTGCT+AGG - chr5_1:11164578-11164597 Msa0717380:CDS 50.0%
! GGTGCTTTTGCTAGGTGTTC+TGG - chr5_1:11164586-11164605 Msa0717380:CDS 50.0%
GCATGTGTAGAGAAGACGCA+TGG - chr5_1:11164955-11164974 Msa0717380:intron 50.0%
GCTATGATTGGGCAAGTTGC+AGG - chr5_1:11165814-11165833 Msa0717380:intron 50.0%
ATGATTGGGCAAGTTGCAGG+TGG - chr5_1:11165817-11165836 Msa0717380:intron 50.0%
GAGAAGCCAATGCTTAAGGC+TGG - chr5_1:11165850-11165869 Msa0717380:intron 50.0%
! GAAGAGGAATTGCTGGCCTA+AGG - chr5_1:11165897-11165916 Msa0717380:intron 50.0%
! AATTGCTGGCCTAAGGTTCG+TGG - chr5_1:11165904-11165923 Msa0717380:intron 50.0%
ATAGCCACACCACGAACCTT+AGG + chr5_1:11165916-11165935 None:intergenic 50.0%
CCTCCATGAGGATGTTCAAC+TGG + chr5_1:11165943-11165962 None:intergenic 50.0%
CCAGTTGAACATCCTCATGG+AGG - chr5_1:11165940-11165959 Msa0717380:intron 50.0%
GTTGAACATCCTCATGGAGG+AGG - chr5_1:11165943-11165962 Msa0717380:intron 50.0%
GGAGGTAACCACCAGCATAT+TGG - chr5_1:11165961-11165980 Msa0717380:intron 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr5_1:11166018-11166037 None:intergenic 50.0%
CTAAGAGAACTGGTCGTCTC+AGG - chr5_1:11166043-11166062 Msa0717380:CDS 50.0%
AAGAGAACTGGTCGTCTCAG+GGG - chr5_1:11166045-11166064 Msa0717380:CDS 50.0%
! GTTTAGGTTTCCGGCGAGAT+GGG - chr5_1:11164199-11164218 Msa0717380:three_prime_UTR 50.0%
CGAGATGGGTAGGGTTATCA+GGG - chr5_1:11164213-11164232 Msa0717380:three_prime_UTR 50.0%
GTGGGTGTGGGACTTGAAAA+CGG + chr5_1:11164260-11164279 None:intergenic 50.0%
CGTTTCCGCAGTCTCGATTT+CGG - chr5_1:11164298-11164317 Msa0717380:three_prime_UTR 50.0%
CGGAATGTGACCTTAGCTAG+TGG + chr5_1:11164388-11164407 None:intergenic 50.0%
! AGAGCTTTTCGTTGCTGCTG+AGG - chr5_1:11164435-11164454 Msa0717380:three_prime_UTR 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr5_1:11164436-11164455 Msa0717380:three_prime_UTR 50.0%
GAGGATGATTCCTGAAGGTG+CGG - chr5_1:11164528-11164547 Msa0717380:three_prime_UTR 50.0%
! GTGATCGTGGTGCTTTTGCT+AGG - chr5_1:11164578-11164597 Msa0717380:CDS 50.0%
! GGTGCTTTTGCTAGGTGTTC+TGG - chr5_1:11164586-11164605 Msa0717380:CDS 50.0%
GCATGTGTAGAGAAGACGCA+TGG - chr5_1:11164955-11164974 Msa0717380:intron 50.0%
GCTATGATTGGGCAAGTTGC+AGG - chr5_1:11165814-11165833 Msa0717380:intron 50.0%
ATGATTGGGCAAGTTGCAGG+TGG - chr5_1:11165817-11165836 Msa0717380:intron 50.0%
GAGAAGCCAATGCTTAAGGC+TGG - chr5_1:11165850-11165869 Msa0717380:intron 50.0%
! GAAGAGGAATTGCTGGCCTA+AGG - chr5_1:11165897-11165916 Msa0717380:intron 50.0%
! AATTGCTGGCCTAAGGTTCG+TGG - chr5_1:11165904-11165923 Msa0717380:intron 50.0%
ATAGCCACACCACGAACCTT+AGG + chr5_1:11165916-11165935 None:intergenic 50.0%
CCTCCATGAGGATGTTCAAC+TGG + chr5_1:11165943-11165962 None:intergenic 50.0%
CCAGTTGAACATCCTCATGG+AGG - chr5_1:11165940-11165959 Msa0717380:intron 50.0%
GTTGAACATCCTCATGGAGG+AGG - chr5_1:11165943-11165962 Msa0717380:intron 50.0%
GGAGGTAACCACCAGCATAT+TGG - chr5_1:11165961-11165980 Msa0717380:intron 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr5_1:11166018-11166037 None:intergenic 50.0%
CTAAGAGAACTGGTCGTCTC+AGG - chr5_1:11166043-11166062 Msa0717380:CDS 50.0%
AAGAGAACTGGTCGTCTCAG+GGG - chr5_1:11166045-11166064 Msa0717380:CDS 50.0%
CTACGACTCTAACCACCGTG+CGG + chr5_1:11164179-11164198 None:intergenic 55.0%
! GGTTTAGGTTTCCGGCGAGA+TGG - chr5_1:11164198-11164217 Msa0717380:three_prime_UTR 55.0%
GATAACCCTACCCATCTCGC+CGG + chr5_1:11164212-11164231 None:intergenic 55.0%
GCGAGATGGGTAGGGTTATC+AGG - chr5_1:11164212-11164231 Msa0717380:three_prime_UTR 55.0%
AGGGCACAACGTAAAGGAGC+AGG - chr5_1:11164232-11164251 Msa0717380:three_prime_UTR 55.0%
ATCATTCACGACCCAGGTCG+CGG - chr5_1:11164358-11164377 Msa0717380:three_prime_UTR 55.0%
GCTGCTGAGGGACTTTACAC+TGG - chr5_1:11164448-11164467 Msa0717380:three_prime_UTR 55.0%
ATTGGGCAAGTTGCAGGTGG+AGG - chr5_1:11165820-11165839 Msa0717380:intron 55.0%
TGGTGGTTACCTCCTCCATG+AGG + chr5_1:11165955-11165974 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr5_1:11166005-11166024 Msa0717380:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr5_1:11166015-11166034 None:intergenic 55.0%
AGCTGCTTCTGCTGCTGCTA+AGG - chr5_1:11166071-11166090 Msa0717380:CDS 55.0%
CTACGACTCTAACCACCGTG+CGG + chr5_1:11164179-11164198 None:intergenic 55.0%
! GGTTTAGGTTTCCGGCGAGA+TGG - chr5_1:11164198-11164217 Msa0717380:three_prime_UTR 55.0%
GATAACCCTACCCATCTCGC+CGG + chr5_1:11164212-11164231 None:intergenic 55.0%
GCGAGATGGGTAGGGTTATC+AGG - chr5_1:11164212-11164231 Msa0717380:three_prime_UTR 55.0%
AGGGCACAACGTAAAGGAGC+AGG - chr5_1:11164232-11164251 Msa0717380:three_prime_UTR 55.0%
ATCATTCACGACCCAGGTCG+CGG - chr5_1:11164358-11164377 Msa0717380:three_prime_UTR 55.0%
GCTGCTGAGGGACTTTACAC+TGG - chr5_1:11164448-11164467 Msa0717380:three_prime_UTR 55.0%
ATTGGGCAAGTTGCAGGTGG+AGG - chr5_1:11165820-11165839 Msa0717380:intron 55.0%
TGGTGGTTACCTCCTCCATG+AGG + chr5_1:11165955-11165974 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr5_1:11166005-11166024 Msa0717380:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr5_1:11166015-11166034 None:intergenic 55.0%
AGCTGCTTCTGCTGCTGCTA+AGG - chr5_1:11166071-11166090 Msa0717380:CDS 55.0%
TCCATATCATCGCCGCACGG+TGG - chr5_1:11164164-11164183 Msa0717380:three_prime_UTR 60.0%
ACCACCGTGCGGCGATGATA+TGG + chr5_1:11164168-11164187 None:intergenic 60.0%
CGCACGGTGGTTAGAGTCGT+AGG - chr5_1:11164177-11164196 Msa0717380:three_prime_UTR 60.0%
AGGTTTCCGGCGAGATGGGT+AGG - chr5_1:11164203-11164222 Msa0717380:three_prime_UTR 60.0%
GGTTTCCGGCGAGATGGGTA+GGG - chr5_1:11164204-11164223 Msa0717380:three_prime_UTR 60.0%
TCCCACACCCACCATCGCAA+AGG - chr5_1:11164268-11164287 Msa0717380:three_prime_UTR 60.0%
!! GCCTTTGCGATGGTGGGTGT+GGG + chr5_1:11164272-11164291 None:intergenic 60.0%
TGCTGGGCCTTTGCGATGGT+GGG + chr5_1:11164278-11164297 None:intergenic 60.0%
AACGTGCTGGGCCTTTGCGA+TGG + chr5_1:11164282-11164301 None:intergenic 60.0%
CGAGACTGCGGAAACGTGCT+GGG + chr5_1:11164294-11164313 None:intergenic 60.0%
TCGAGACTGCGGAAACGTGC+TGG + chr5_1:11164295-11164314 None:intergenic 60.0%
TCGCGGTGCACCACTAGCTA+AGG - chr5_1:11164375-11164394 Msa0717380:three_prime_UTR 60.0%
CTGGCCTAAGGTTCGTGGTG+TGG - chr5_1:11165909-11165928 Msa0717380:intron 60.0%
GTTAGGCGTGATGCTCCTCC+TGG - chr5_1:11165997-11166016 Msa0717380:intron 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr5_1:11166009-11166028 Msa0717380:CDS 60.0%
TCCATATCATCGCCGCACGG+TGG - chr5_1:11164164-11164183 Msa0717380:three_prime_UTR 60.0%
ACCACCGTGCGGCGATGATA+TGG + chr5_1:11164168-11164187 None:intergenic 60.0%
CGCACGGTGGTTAGAGTCGT+AGG - chr5_1:11164177-11164196 Msa0717380:three_prime_UTR 60.0%
AGGTTTCCGGCGAGATGGGT+AGG - chr5_1:11164203-11164222 Msa0717380:three_prime_UTR 60.0%
GGTTTCCGGCGAGATGGGTA+GGG - chr5_1:11164204-11164223 Msa0717380:three_prime_UTR 60.0%
TCCCACACCCACCATCGCAA+AGG - chr5_1:11164268-11164287 Msa0717380:three_prime_UTR 60.0%
!! GCCTTTGCGATGGTGGGTGT+GGG + chr5_1:11164272-11164291 None:intergenic 60.0%
TGCTGGGCCTTTGCGATGGT+GGG + chr5_1:11164278-11164297 None:intergenic 60.0%
AACGTGCTGGGCCTTTGCGA+TGG + chr5_1:11164282-11164301 None:intergenic 60.0%
CGAGACTGCGGAAACGTGCT+GGG + chr5_1:11164294-11164313 None:intergenic 60.0%
TCGAGACTGCGGAAACGTGC+TGG + chr5_1:11164295-11164314 None:intergenic 60.0%
TCGCGGTGCACCACTAGCTA+AGG - chr5_1:11164375-11164394 Msa0717380:three_prime_UTR 60.0%
CTGGCCTAAGGTTCGTGGTG+TGG - chr5_1:11165909-11165928 Msa0717380:intron 60.0%
GTTAGGCGTGATGCTCCTCC+TGG - chr5_1:11165997-11166016 Msa0717380:intron 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr5_1:11166009-11166028 Msa0717380:CDS 60.0%
!! GGCCTTTGCGATGGTGGGTG+TGG + chr5_1:11164273-11164292 None:intergenic 65.0%
GTGCTGGGCCTTTGCGATGG+TGG + chr5_1:11164279-11164298 None:intergenic 65.0%
CTAGTGGTGCACCGCGACCT+GGG + chr5_1:11164372-11164391 None:intergenic 65.0%
!! GGCCTTTGCGATGGTGGGTG+TGG + chr5_1:11164273-11164292 None:intergenic 65.0%
GTGCTGGGCCTTTGCGATGG+TGG + chr5_1:11164279-11164298 None:intergenic 65.0%
CTAGTGGTGCACCGCGACCT+GGG + chr5_1:11164372-11164391 None:intergenic 65.0%
GCTAGTGGTGCACCGCGACC+TGG + chr5_1:11164373-11164392 None:intergenic 70.0%
GCTAGTGGTGCACCGCGACC+TGG + chr5_1:11164373-11164392 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 11164138 11166520 11164138 ID=Msa0717380;Name=Msa0717380
chr5_1 mRNA 11164138 11166520 11164138 ID=Msa0717380-mRNA-1;Parent=Msa0717380;Name=Msa0717380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=79|1|1|1|1|1|2|419|258
chr5_1 exon 11164138 11164893 11164138 ID=Msa0717380-mRNA-1:exon:4578;Parent=Msa0717380-mRNA-1
chr5_1 exon 11166002 11166520 11166002 ID=Msa0717380-mRNA-1:exon:4577;Parent=Msa0717380-mRNA-1
chr5_1 five_prime_UTR 11166442 11166520 11166442 ID=Msa0717380-mRNA-1:five_prime_utr;Parent=Msa0717380-mRNA-1
chr5_1 CDS 11166002 11166441 11166002 ID=Msa0717380-mRNA-1:cds;Parent=Msa0717380-mRNA-1
chr5_1 CDS 11164557 11164893 11164557 ID=Msa0717380-mRNA-1:cds;Parent=Msa0717380-mRNA-1
chr5_1 three_prime_UTR 11164138 11164556 11164138 ID=Msa0717380-mRNA-1:three_prime_utr;Parent=Msa0717380-mRNA-1
Gene Sequence

>Msa0717380

ATGGGTAGGGTTATCAGGGCACAACGTAAAGGAGCAGGCTCCGTTTTCAAGTCCCACACCCACCATCGCAAAGGCCCAGCACGTTTCCGCAGTCTCGATTTCGGTGAAAGAAACGGTTACCTCAAAGGAGTAGTGAACGAAATCATTCACGACCCAGGTCGCGGTGCACCACTAGCTAAGGTCACATTCCGACACCCTTTTAGATATAAGAAACAGAAAGAGCTTTTCGTTGCTGCTGAGGGACTTTACACTGGACAGTTTATTTATTGTGGGAAAAAAGCTACTCTTGTTGTTGGAAATGTTTTGCCATTGAGGATGATTCCTGAAGGTGCGGTTATTTGTAATGTTGAACATCATGTTGGTGATCGTGGTGCTTTTGCTAGGTGTTCTGGTGATTATGCTATTGTTATTAGTCATAATCCTGATAATGATACCTCTAGGATTAAGCTACCATCAGGGGCAAAGAAGATTGTTCCAAGTGAGTGCAGAGCTATGATTGGGCAAGTTGCAGGTGGAGGAAGAACTGAGAAGCCAATGCTTAAGGCTGGTAATGCTTACCACAAATTTAGGGTGAAGAGGAATTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAACATCCTCATGGAGGAGGTAACCACCAGCATATTGGACATGCTAGTACTGTTAGGCGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCTAAGAGAACTGGTCGTCTCAGGGGACAAGCTGCTTCTGCTGCTGCTAAGGCTGATTAA

Protein sequence

>Msa0717380

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIIHDPGRGAPLAKVTFRHPFRYKKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRMIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSECRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAASAAAKAD*