Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835930 | XP_003611670.1 | 97.956 | 587 | 12 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835930 | sp|Q9LT75|PTN2A_ARATH | 61.993 | 592 | 186 | 13 | 21 | 587 | 34 | 611 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835930 | G7K591 | 97.956 | 587 | 12 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1207 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002420 | Msa0835930 | 0.829196 | 5.893644e-55 | -8.615850e-47 |
| Msa0003940 | Msa0835930 | 0.801898 | 7.246316e-49 | -8.615850e-47 |
| Msa0660370 | Msa0835930 | 0.809155 | 2.175540e-50 | -8.615850e-47 |
| Msa0705680 | Msa0835930 | 0.809016 | 2.330529e-50 | -8.615850e-47 |
| Msa0754710 | Msa0835930 | 0.980655 | 1.009236e-150 | -8.615850e-47 |
| Msa0756610 | Msa0835930 | 0.978385 | 1.024812e-145 | -8.615850e-47 |
| Msa0810930 | Msa0835930 | 0.812483 | 4.144891e-51 | -8.615850e-47 |
| Msa0835930 | Msa0851160 | 0.806922 | 6.501741e-50 | -8.615850e-47 |
| Msa0835930 | Msa0902360 | 0.811911 | 5.524145e-51 | -8.615850e-47 |
| Msa0835930 | Msa0982650 | 0.810793 | 9.658473e-51 | -8.615850e-47 |
| Msa0835930 | Msa0996820 | 0.822159 | 2.750244e-53 | -8.615850e-47 |
| Msa0835930 | Msa1072960 | 0.800902 | 1.158907e-48 | -8.615850e-47 |
| Msa0835930 | Msa1207190 | 0.832925 | 7.156116e-56 | -8.615850e-47 |
| Msa0835930 | Msa1257440 | 0.820718 | 5.913748e-53 | -8.615850e-47 |
| Msa0835930 | Msa1305250 | 0.828907 | 6.925171e-55 | -8.615850e-47 |
| Msa0835930 | Msa1360960 | 0.808152 | 3.564589e-50 | -8.615850e-47 |
| Msa0835930 | Msa1375280 | 0.810563 | 1.082940e-50 | -8.615850e-47 |
| Msa0835930 | Msa1414390 | 0.815698 | 8.091346e-52 | -8.615850e-47 |
| Msa0124910 | Msa0835930 | 0.800313 | 1.527967e-48 | -8.615850e-47 |
| Msa0169410 | Msa0835930 | 0.806155 | 9.435463e-50 | -8.615850e-47 |
| Msa0389690 | Msa0835930 | 0.825779 | 3.891574e-54 | -8.615850e-47 |
| Msa0416020 | Msa0835930 | 0.827830 | 1.259611e-54 | -8.615850e-47 |
| Msa0427780 | Msa0835930 | 0.807720 | 4.403265e-50 | -8.615850e-47 |
| Msa0427930 | Msa0835930 | 0.810961 | 8.884828e-51 | -8.615850e-47 |
| Msa0508180 | Msa0835930 | 0.834512 | 2.871620e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835930 | MtrunA17_Chr5g0401771 | 97.956 | 587 | 12 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1207 |
| Msa0835930 | MtrunA17_Chr1g0208241 | 61.375 | 611 | 197 | 14 | 5 | 587 | 22 | 621 | 0.0 | 734 |
| Msa0835930 | MtrunA17_Chr7g0218331 | 40.860 | 186 | 100 | 2 | 114 | 299 | 36 | 211 | 8.56e-43 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835930 | AT3G19420.1 | 61.993 | 592 | 186 | 13 | 21 | 587 | 34 | 611 | 0.0 | 729 |
| Msa0835930 | AT3G50110.1 | 61.607 | 560 | 173 | 9 | 39 | 587 | 104 | 632 | 0.0 | 674 |
| Msa0835930 | AT5G39400.1 | 41.398 | 186 | 99 | 2 | 114 | 299 | 34 | 209 | 7.08e-43 | 159 |
Find 166 sgRNAs with CRISPR-Local
Find 390 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTTCATCTTCTAAAA+TGG | 0.209199 | 5_4:-9322124 | Msa0835930:five_prime_UTR |
| GTTCAAATTTGTTAATATTC+AGG | 0.209677 | 5_4:-9315957 | Msa0835930:three_prime_UTR |
| AATGAACAACGACCACATTT+TGG | 0.230127 | 5_4:+9317930 | None:intergenic |
| GGGCAATTATGATCACTAAA+TGG | 0.238609 | 5_4:+9318013 | None:intergenic |
| GGCTTCACAAATGCCCTTAT+TGG | 0.245308 | 5_4:-9317408 | Msa0835930:CDS |
| GTGAATGATTCAATTATATT+AGG | 0.246164 | 5_4:+9320774 | None:intergenic |
| ATGTCAGATCCTTTGCTTGC+AGG | 0.261001 | 5_4:+9316410 | None:intergenic |
| ATGGATGGTCTAACCCAATA+AGG | 0.293918 | 5_4:+9317394 | None:intergenic |
| ACAGGAAGGTGGATTTGATT+TGG | 0.308292 | 5_4:-9319906 | Msa0835930:intron |
| GGATCATACCCACAGGTAAA+AGG | 0.314391 | 5_4:-9315909 | Msa0835930:three_prime_UTR |
| TGGGCGAGAAATCTGAAGTT+TGG | 0.316797 | 5_4:-9320921 | Msa0835930:CDS |
| CAGTTTCTAGTATATCTTCC+TGG | 0.317240 | 5_4:-9320941 | Msa0835930:CDS |
| TAAAAGGATCAGGCACATTA+TGG | 0.329095 | 5_4:-9315893 | Msa0835930:three_prime_UTR |
| TGCAACTGATTACAAATATA+TGG | 0.332393 | 5_4:-9316258 | Msa0835930:CDS |
| CCGTGCGTTCGTCATGCTGC+TGG | 0.336679 | 5_4:+9316162 | None:intergenic |
| GCTTCACAAATGCCCTTATT+GGG | 0.348878 | 5_4:-9317407 | Msa0835930:CDS |
| TTTGTCGAAGTGCATATTCA+TGG | 0.351370 | 5_4:-9317967 | Msa0835930:CDS |
| TTCCCTCCTTTGTGTTCCCT+TGG | 0.354377 | 5_4:+9316283 | None:intergenic |
| GGGCGAGAAATCTGAAGTTT+GGG | 0.365437 | 5_4:-9320920 | Msa0835930:CDS |
| GAGCTTGCTACGAGCAGTTC+AGG | 0.368342 | 5_4:-9320807 | Msa0835930:CDS |
| TAATTGAATCATTCACTAAA+GGG | 0.369778 | 5_4:-9320767 | Msa0835930:CDS |
| ATAATAGCTATGGGATTTCC+TGG | 0.369907 | 5_4:-9319860 | Msa0835930:CDS |
| ATTACAATTTCTGATCATAA+TGG | 0.385783 | 5_4:-9317373 | Msa0835930:intron |
| GATTCCATGTTGGTGGTGTT+AGG | 0.387770 | 5_4:+9316083 | None:intergenic |
| AATGATGCTATAAGTTGAAT+AGG | 0.387784 | 5_4:+9317989 | None:intergenic |
| ACCATTAGATCCTTTGTCTT+GGG | 0.391614 | 5_4:+9317251 | None:intergenic |
| GCATTTGAGTGACTCATTGA+TGG | 0.391855 | 5_4:-9321054 | Msa0835930:exon |
| GCATTGATCCAGAAATCTTC+TGG | 0.391902 | 5_4:+9317147 | None:intergenic |
| TGTCAGATCCTTTGCTTGCA+GGG | 0.405115 | 5_4:+9316411 | None:intergenic |
| TTCAATTATATTAGGTTGCT+CGG | 0.413613 | 5_4:+9320782 | None:intergenic |
| GGCAATTATGATCACTAAAT+GGG | 0.416144 | 5_4:+9318014 | None:intergenic |
| GATCCCAGCTCCAGGGTTCC+AGG | 0.417514 | 5_4:-9316483 | Msa0835930:CDS |
| ACCACCAACATGGAATCTAT+AGG | 0.422090 | 5_4:-9316077 | Msa0835930:CDS |
| AGTTTCATCTTACCTTCGTC+CGG | 0.428921 | 5_4:+9317505 | None:intergenic |
| AGAAACAATATGCCGTGCTT+TGG | 0.429053 | 5_4:+9320704 | None:intergenic |
| TCCCAAGACAAAGGATCTAA+TGG | 0.429717 | 5_4:-9317252 | Msa0835930:intron |
| GGTGTATGCTGAGAGGGTTT+CGG | 0.429957 | 5_4:-9317429 | Msa0835930:CDS |
| CCACCAACATGGAATCTATA+GGG | 0.430392 | 5_4:-9316076 | Msa0835930:CDS |
| ATAATTGAATCATTCACTAA+AGG | 0.434744 | 5_4:-9320768 | Msa0835930:CDS |
| TGTTCATTGTAAAGCTGGTA+TGG | 0.435047 | 5_4:-9317915 | Msa0835930:CDS |
| CACTGAAAATATAATAGCTA+TGG | 0.435716 | 5_4:-9319870 | Msa0835930:CDS |
| CAGGAAGATATACTAGAAAC+TGG | 0.438818 | 5_4:+9320942 | None:intergenic |
| CTCTTACTTGAATTAGATGT+TGG | 0.439796 | 5_4:+9316362 | None:intergenic |
| GACTATGATGGCACCCTACC+TGG | 0.440326 | 5_4:-9316443 | Msa0835930:CDS |
| TTTCTGGTTAAAGGAATCAA+TGG | 0.442200 | 5_4:+9317713 | None:intergenic |
| GACATAAATAATGTCTCATC+TGG | 0.447201 | 5_4:-9316392 | Msa0835930:CDS |
| AACCAGAAAAGATGTGTAGA+TGG | 0.447224 | 5_4:-9317699 | Msa0835930:CDS |
| TCTGTCAGACCTGGCTCCCC+TGG | 0.450444 | 5_4:+9317093 | None:intergenic |
| CGTGAGATTTGTAGAGATTG+AGG | 0.455107 | 5_4:+9322038 | None:intergenic |
| CAGAGAAAGATCCCAGCTCC+AGG | 0.457657 | 5_4:-9316491 | Msa0835930:CDS |
| TCGACCTGGAACCCTGGAGC+TGG | 0.458519 | 5_4:+9316479 | None:intergenic |
| CTCTTCAAAGGAAGCAGTAA+AGG | 0.459094 | 5_4:-9320736 | Msa0835930:CDS |
| TACCATTAGATCCTTTGTCT+TGG | 0.463104 | 5_4:+9317250 | None:intergenic |
| GGGTATGATCCCGGTGTAAA+GGG | 0.466221 | 5_4:+9315921 | None:intergenic |
| GGAGCCAGGTCTGACAGAAT+TGG | 0.466471 | 5_4:-9317088 | Msa0835930:CDS |
| CCCTATAGATTCCATGTTGG+TGG | 0.466488 | 5_4:+9316076 | None:intergenic |
| TATAGGGACAAGTGAATTCA+AGG | 0.468706 | 5_4:-9316060 | Msa0835930:CDS |
| TGGGTATGATCCCGGTGTAA+AGG | 0.470067 | 5_4:+9315920 | None:intergenic |
| ATCAATGGCTTCCTCAGCAG+TGG | 0.477990 | 5_4:+9317728 | None:intergenic |
| TTTACCTGTGGGTATGATCC+CGG | 0.478369 | 5_4:+9315912 | None:intergenic |
| ACAACTTCGACCTGGAACCC+TGG | 0.483885 | 5_4:+9316473 | None:intergenic |
| GCTCGTAGCAAGCTCATTTG+AGG | 0.487048 | 5_4:+9320815 | None:intergenic |
| GTCTTCGAAGATGGAGGAGC+GGG | 0.487404 | 5_4:+9321029 | None:intergenic |
| ATAATAAAATGCAGGAAAGA+AGG | 0.488077 | 5_4:+9315833 | None:intergenic |
| GCTCGTCTTACAAGTGGGAT+TGG | 0.491539 | 5_4:-9320849 | Msa0835930:CDS |
| TTTGCATTACCAGGGGAGCC+AGG | 0.493421 | 5_4:-9317102 | Msa0835930:CDS |
| ATCATTCACTAAAGGGTTGG+TGG | 0.498981 | 5_4:-9320760 | Msa0835930:CDS |
| TGGATCAATGCATCAAAGAA+AGG | 0.505856 | 5_4:-9317135 | Msa0835930:CDS |
| AAATTACTAACAATTTGACT+TGG | 0.506905 | 5_4:+9317660 | None:intergenic |
| TAAAGTTCAGTCTTCGAAGA+TGG | 0.509153 | 5_4:+9321020 | None:intergenic |
| ATCGACAGGGAGATTTCTAC+TGG | 0.511246 | 5_4:-9317038 | Msa0835930:intron |
| TACCCACAGGTAAAAGGATC+AGG | 0.511997 | 5_4:-9315903 | Msa0835930:three_prime_UTR |
| AGAAATCTGAAGTTTGGGGC+TGG | 0.513911 | 5_4:-9320915 | Msa0835930:CDS |
| ATTGAGGTTCGGATCAATGT+AGG | 0.514120 | 5_4:+9322054 | None:intergenic |
| GTCGTTGTTCATTGTAAAGC+TGG | 0.516023 | 5_4:-9317920 | Msa0835930:CDS |
| CTCGTAGCAAGCTCATTTGA+GGG | 0.518109 | 5_4:+9320816 | None:intergenic |
| AAGTGCATATTCATGGTTGA+AGG | 0.518532 | 5_4:-9317960 | Msa0835930:CDS |
| GATTTGTAGAGATTGAGGTT+CGG | 0.520285 | 5_4:+9322043 | None:intergenic |
| AATTACTAACAATTTGACTT+GGG | 0.526266 | 5_4:+9317661 | None:intergenic |
| TGGATGGTCTAACCCAATAA+GGG | 0.541504 | 5_4:+9317395 | None:intergenic |
| TGTGTATAGCCCTTTACACC+GGG | 0.541866 | 5_4:-9315930 | Msa0835930:three_prime_UTR |
| GCATTTGCTCGTCTTACAAG+TGG | 0.541935 | 5_4:-9320855 | Msa0835930:CDS |
| TGAATCATTCACTAAAGGGT+TGG | 0.542994 | 5_4:-9320763 | Msa0835930:CDS |
| ATTATGATCAGAAATTGTAA+TGG | 0.543592 | 5_4:+9317375 | None:intergenic |
| ACTGAAAATATAATAGCTAT+GGG | 0.543686 | 5_4:-9319869 | Msa0835930:CDS |
| AAACTTCATAATATTCATGC+AGG | 0.544352 | 5_4:-9316107 | Msa0835930:CDS |
| AGTTTCTAGTATATCTTCCT+GGG | 0.544911 | 5_4:-9320940 | Msa0835930:CDS |
| TCAAAATAAACGCAGATACC+AGG | 0.545779 | 5_4:-9320682 | Msa0835930:intron |
| TAGCTCAATGGATAAAGTGA+TGG | 0.548350 | 5_4:-9322176 | Msa0835930:five_prime_UTR |
| AAAGCTGGTATGGGAAGGAC+AGG | 0.551221 | 5_4:-9317905 | Msa0835930:CDS |
| TCCACAGGTGTATGCTGAGA+GGG | 0.552284 | 5_4:-9317435 | Msa0835930:intron |
| GAAAAGATGTGTAGATGGAA+AGG | 0.552661 | 5_4:-9317694 | Msa0835930:CDS |
| GTTCATTGTAAAGCTGGTAT+GGG | 0.554917 | 5_4:-9317914 | Msa0835930:CDS |
| TGATCAGAAATTGTAATGGA+TGG | 0.555457 | 5_4:+9317379 | None:intergenic |
| TGATTAGAGTGTAGAGTCAC+CGG | 0.555926 | 5_4:+9322083 | None:intergenic |
| GACCAAGGGAACACAAAGGA+GGG | 0.557131 | 5_4:-9316285 | Msa0835930:CDS |
| AAATTTAAATAATAAAATGC+AGG | 0.558126 | 5_4:+9315825 | None:intergenic |
| AGGCCACTACTGACCATGTA+GGG | 0.559645 | 5_4:-9316217 | Msa0835930:CDS |
| AGGGTTGGTGGACTCTTCAA+AGG | 0.561799 | 5_4:-9320748 | Msa0835930:CDS |
| GAGCGATGAAGAGGAGACCA+AGG | 0.562238 | 5_4:-9316300 | Msa0835930:CDS |
| TTACCTTAAGATACAAAAGA+AGG | 0.562827 | 5_4:+9317867 | None:intergenic |
| AATAATAGTTACACCGTCAC+CGG | 0.563496 | 5_4:-9321960 | Msa0835930:five_prime_UTR |
| GATGCTATAAGTTGAATAGG+AGG | 0.564724 | 5_4:+9317992 | None:intergenic |
| TCAATGGCTTCCTCAGCAGT+GGG | 0.569100 | 5_4:+9317729 | None:intergenic |
| AATAAAACTATACCTTCCCC+TGG | 0.569386 | 5_4:+9319052 | None:intergenic |
| GTTTCATCTTACCTTCGTCC+GGG | 0.569711 | 5_4:+9317506 | None:intergenic |
| GGCGAGTAGTTAGCCGGTGA+CGG | 0.570821 | 5_4:+9321947 | None:intergenic |
| ATTCTCAGAGAGCGATGAAG+AGG | 0.571302 | 5_4:-9316309 | Msa0835930:CDS |
| AGGGATGTTGTCGCGCGCAA+CGG | 0.573248 | 5_4:-9316198 | Msa0835930:CDS |
| GGCTAACTACTCGCCGTCGC+CGG | 0.574231 | 5_4:-9321939 | Msa0835930:intron |
| GGACGGAGAGGAACATCATA+CGG | 0.575253 | 5_4:+9315786 | None:intergenic |
| CATTTGCTCGTCTTACAAGT+GGG | 0.577667 | 5_4:-9320854 | Msa0835930:CDS |
| TTGTGTATAGCCCTTTACAC+CGG | 0.577897 | 5_4:-9315931 | Msa0835930:three_prime_UTR |
| AAACTTCAGATTTCTCGCCC+AGG | 0.578026 | 5_4:+9320923 | None:intergenic |
| CGCGCGACAACATCCCTACA+TGG | 0.578706 | 5_4:+9316204 | None:intergenic |
| AAAGTCAACCCTGCAAGCAA+AGG | 0.578759 | 5_4:-9316419 | Msa0835930:CDS |
| CTACCATCACAACTTCGACC+TGG | 0.580131 | 5_4:+9316465 | None:intergenic |
| AACTCTTTGTAACAGGAAGG+TGG | 0.581611 | 5_4:-9319917 | Msa0835930:intron |
| AGACCAAGGGAACACAAAGG+AGG | 0.583368 | 5_4:-9316286 | Msa0835930:CDS |
| AGTGGATCGCTTACCGGCGA+CGG | 0.588917 | 5_4:+9321926 | None:intergenic |
| CCAACCAATTCTGTCAGACC+TGG | 0.594002 | 5_4:+9317084 | None:intergenic |
| CGGACTTTAACACACTTCAA+CGG | 0.596252 | 5_4:-9317539 | Msa0835930:CDS |
| TATACAATCTTTGTTCAGAG+AGG | 0.602650 | 5_4:-9319095 | Msa0835930:CDS |
| TGTTAGAATGTCCTCAAGGA+CGG | 0.603428 | 5_4:+9315769 | None:intergenic |
| GCAAACACTCTGTTCCGTGC+CGG | 0.603887 | 5_4:-9322102 | Msa0835930:five_prime_UTR |
| GACTGAGAACAGTGGCATGT+CGG | 0.608063 | 5_4:-9320877 | Msa0835930:CDS |
| CTAGAAACTGGTGACAAGGA+TGG | 0.613708 | 5_4:+9320954 | None:intergenic |
| GTTCCAGGTCGAAGTTGTGA+TGG | 0.614063 | 5_4:-9316468 | Msa0835930:CDS |
| TGTCCCTATAGATTCCATGT+TGG | 0.614065 | 5_4:+9316073 | None:intergenic |
| CATCCCTACATGGTCAGTAG+TGG | 0.615666 | 5_4:+9316214 | None:intergenic |
| GACAAGTCCAGCCCGGACGA+AGG | 0.618832 | 5_4:-9317517 | Msa0835930:intron |
| GAGGCCACTACTGACCATGT+AGG | 0.621926 | 5_4:-9316218 | Msa0835930:CDS |
| ATGCTATAAGTTGAATAGGA+GGG | 0.622454 | 5_4:+9317993 | None:intergenic |
| TGCATATTCATGGTTGAAGG+AGG | 0.622487 | 5_4:-9317957 | Msa0835930:CDS |
| TTTAGTCTTTGCATTACCAG+GGG | 0.622542 | 5_4:-9317109 | Msa0835930:CDS |
| CCAGAGCTAAAATCACCACC+AGG | 0.625547 | 5_4:+9319842 | None:intergenic |
| GGAACCTCATCAAGCATCTG+AGG | 0.628106 | 5_4:-9316237 | Msa0835930:CDS |
| TAGAAAGCATCCCAAGACAA+AGG | 0.629907 | 5_4:-9317261 | Msa0835930:CDS |
| CCAGGTCTGACAGAATTGGT+TGG | 0.630334 | 5_4:-9317084 | Msa0835930:CDS |
| ATTGTAAAGCTGGTATGGGA+AGG | 0.630358 | 5_4:-9317910 | Msa0835930:CDS |
| AGTTCAGTCTTCGAAGATGG+AGG | 0.632879 | 5_4:+9321023 | None:intergenic |
| GATGTTCCTCTCCGTCCTTG+AGG | 0.635719 | 5_4:-9315780 | Msa0835930:three_prime_UTR |
| AGAGAAAGATCCCAGCTCCA+GGG | 0.638717 | 5_4:-9316490 | Msa0835930:CDS |
| CCCTCCGAAAGAAAACAGAT+CGG | 0.640033 | 5_4:-9321984 | Msa0835930:five_prime_UTR |
| AGCGATGAAGAGGAGACCAA+GGG | 0.640892 | 5_4:-9316299 | Msa0835930:CDS |
| GGCGAGAAATCTGAAGTTTG+GGG | 0.643756 | 5_4:-9320919 | Msa0835930:CDS |
| TATACTAGAAACTGGTGACA+AGG | 0.644336 | 5_4:+9320950 | None:intergenic |
| AGGCAGTGCAGACCAAAGCA+CGG | 0.648450 | 5_4:-9320716 | Msa0835930:CDS |
| CCAGCAGCATGACGAACGCA+CGG | 0.649232 | 5_4:-9316162 | Msa0835930:CDS |
| GGGGTTCTATCGAAATCACA+TGG | 0.653811 | 5_4:-9319717 | Msa0835930:CDS |
| TTCCACAGGTGTATGCTGAG+AGG | 0.654856 | 5_4:-9317436 | Msa0835930:intron |
| AGGAGACCAAGGGAACACAA+AGG | 0.655502 | 5_4:-9316289 | Msa0835930:CDS |
| TGTTCAGAGAGGTTGTACGA+TGG | 0.656307 | 5_4:-9319084 | Msa0835930:CDS |
| AGTCTTCGAAGATGGAGGAG+CGG | 0.657238 | 5_4:+9321028 | None:intergenic |
| GAAGGAGGATATCCAAAATG+TGG | 0.657507 | 5_4:-9317942 | Msa0835930:CDS |
| GGCGACGGCGAGTAGTTAGC+CGG | 0.657965 | 5_4:+9321941 | None:intergenic |
| AGGTCCTAACACCACCAACA+TGG | 0.659756 | 5_4:-9316087 | Msa0835930:CDS |
| GTGGCCTCAGATGCTTGATG+AGG | 0.665913 | 5_4:+9316233 | None:intergenic |
| TACACCGGGATCATACCCAC+AGG | 0.673048 | 5_4:-9315916 | Msa0835930:three_prime_UTR |
| GTTGTGATGGTAGACTATGA+TGG | 0.676104 | 5_4:-9316455 | Msa0835930:CDS |
| AGGGTGTTAGAATGTCCTCA+AGG | 0.680168 | 5_4:+9315765 | None:intergenic |
| AGAGTGTAGAGTCACCGGCA+CGG | 0.693996 | 5_4:+9322088 | None:intergenic |
| GAATGTCCTCAAGGACGGAG+AGG | 0.694257 | 5_4:+9315774 | None:intergenic |
| CAATGGCTTCCTCAGCAGTG+GGG | 0.728366 | 5_4:+9317730 | None:intergenic |
| ATAGCTATGGGATTTCCTGG+TGG | 0.733310 | 5_4:-9319857 | Msa0835930:CDS |
| AACTCACAGACTGAGAACAG+TGG | 0.745872 | 5_4:-9320885 | Msa0835930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAATAAATGTTCA+TGG | + | chr5_4:9317376-9317395 | None:intergenic | 10.0% |
| !!! | ATTTTTTATTTAAAAATGTC+TGG | - | chr5_4:9317389-9317408 | Msa0835930:CDS | 10.0% |
| !! | TTAGTAAAATATAAATGATA+CGG | - | chr5_4:9318551-9318570 | Msa0835930:intron | 10.0% |
| !! | TATATTATGTTTAGAAAATA+TGG | - | chr5_4:9319361-9319380 | Msa0835930:intron | 10.0% |
| !!! | AATTTTCTTTTATTTTTGTT+TGG | - | chr5_4:9319812-9319831 | Msa0835930:intron | 10.0% |
| !! | TATTTAAATAAATTCTTCAT+TGG | - | chr5_4:9321086-9321105 | Msa0835930:intron | 10.0% |
| !! | AAATTTAAATAATAAAATGC+AGG | + | chr5_4:9322145-9322164 | None:intergenic | 10.0% |
| !! | ACATATTAGTTAAATTAGTT+AGG | + | chr5_4:9316558-9316577 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTATACTATTTTG+AGG | + | chr5_4:9317703-9317722 | None:intergenic | 15.0% |
| !!! | ACAAAATTTTGAACTAATAT+GGG | + | chr5_4:9319218-9319237 | None:intergenic | 15.0% |
| !!! | AACAAAATTTTGAACTAATA+TGG | + | chr5_4:9319219-9319238 | None:intergenic | 15.0% |
| !! | ATGATAGTAAATATTAAGAA+AGG | + | chr5_4:9319252-9319271 | None:intergenic | 15.0% |
| !! | TAATATTTACTATCATATAG+TGG | - | chr5_4:9319256-9319275 | Msa0835930:intron | 15.0% |
| !! | TTTCTAAACATAATATATGA+TGG | + | chr5_4:9319358-9319377 | None:intergenic | 15.0% |
| !! | TTGAATTATACATAATATTG+AGG | - | chr5_4:9319599-9319618 | Msa0835930:intron | 15.0% |
| !!! | TTTTGTAAAAAATAAACTAG+CGG | + | chr5_4:9319872-9319891 | None:intergenic | 15.0% |
| !! | TTCATCATTATAAAAACATT+TGG | + | chr5_4:9321154-9321173 | None:intergenic | 15.0% |
| !!! | TATTTTTCAATGTTATTTTG+TGG | - | chr5_4:9321380-9321399 | Msa0835930:intron | 15.0% |
| !!! | ATTTTTCAATGTTATTTTGT+GGG | - | chr5_4:9321381-9321400 | Msa0835930:intron | 15.0% |
| !!! | CATAAACGTTCTTTTTTTTA+CGG | - | chr5_4:9316734-9316753 | Msa0835930:intron | 20.0% |
| !! | ACAACAAATTAACTCAATAA+GGG | + | chr5_4:9316842-9316861 | None:intergenic | 20.0% |
| !! | AACAACAAATTAACTCAATA+AGG | + | chr5_4:9316843-9316862 | None:intergenic | 20.0% |
| !! | TAAAATAGAAAACCAATCTA+AGG | + | chr5_4:9316886-9316905 | None:intergenic | 20.0% |
| !! | GTGAATGATTCAATTATATT+AGG | + | chr5_4:9317196-9317215 | None:intergenic | 20.0% |
| !! | ATAATTGAATCATTCACTAA+AGG | - | chr5_4:9317199-9317218 | Msa0835930:intron | 20.0% |
| !! | TAATTGAATCATTCACTAAA+GGG | - | chr5_4:9317200-9317219 | Msa0835930:intron | 20.0% |
| !! | CATCTATTAAAGAATCAAAT+TGG | - | chr5_4:9317856-9317875 | Msa0835930:intron | 20.0% |
| !! | ACTGAAAATATAATAGCTAT+GGG | - | chr5_4:9318098-9318117 | Msa0835930:intron | 20.0% |
| !! | AATATAAATGATACGGAAAT+TGG | - | chr5_4:9318558-9318577 | Msa0835930:intron | 20.0% |
| !! | CTCAATTATAAATTACTGTT+TGG | + | chr5_4:9318636-9318655 | None:intergenic | 20.0% |
| !!! | GTTTTATTATATTTGCACTA+TGG | - | chr5_4:9318930-9318949 | Msa0835930:intron | 20.0% |
| !!! | TTTTTTTGAAGAACCTAAAT+TGG | + | chr5_4:9319327-9319346 | None:intergenic | 20.0% |
| !!! | TTTTTATCTGTTTTATGCTA+TGG | + | chr5_4:9319769-9319788 | None:intergenic | 20.0% |
| !! | AGCATAAAACAGATAAAAAT+TGG | - | chr5_4:9319770-9319789 | Msa0835930:intron | 20.0% |
| !!! | TTTTGAAAATAATTACTTGC+TGG | - | chr5_4:9320195-9320214 | Msa0835930:intron | 20.0% |
| !! | TTTGAAAATAATTACTTGCT+GGG | - | chr5_4:9320196-9320215 | Msa0835930:intron | 20.0% |
| !!! | AATTACTAACAATTTGACTT+GGG | + | chr5_4:9320309-9320328 | None:intergenic | 20.0% |
| !! | AAATTACTAACAATTTGACT+TGG | + | chr5_4:9320310-9320329 | None:intergenic | 20.0% |
| !!! | TTTTTTAGTTTATCGTGTTA+AGG | - | chr5_4:9320328-9320347 | Msa0835930:intron | 20.0% |
| !!! | GATATGTCAAATATTTTGAA+CGG | - | chr5_4:9320408-9320427 | Msa0835930:intron | 20.0% |
| !! | ATTATGATCAGAAATTGTAA+TGG | + | chr5_4:9320595-9320614 | None:intergenic | 20.0% |
| !! | ATTACAATTTCTGATCATAA+TGG | - | chr5_4:9320594-9320613 | Msa0835930:intron | 20.0% |
| !!! | ACATTTTATTAATCTAGAGA+AGG | - | chr5_4:9320644-9320663 | Msa0835930:intron | 20.0% |
| !! | AATGAGATATAAAAGTAAGT+TGG | + | chr5_4:9320795-9320814 | None:intergenic | 20.0% |
| !!! | TCTTCTTTATCATTTTGATA+TGG | - | chr5_4:9321125-9321144 | Msa0835930:intron | 20.0% |
| !!! | GTTCAAATTTGTTAATATTC+AGG | - | chr5_4:9322010-9322029 | Msa0835930:five_prime_UTR | 20.0% |
| !!! | GATTTGCAATATTTTGATAA+GGG | + | chr5_4:9322224-9322243 | None:intergenic | 20.0% |
| ! | GTTAAAAAAGATTAGATGAC+TGG | + | chr5_4:9315749-9315768 | None:intergenic | 25.0% |
| ! | TATCCATTGAGCTAAAAATT+AGG | + | chr5_4:9315785-9315804 | None:intergenic | 25.0% |
| !! | GTTTCTTTCATCTTCTAAAA+TGG | - | chr5_4:9315843-9315862 | Msa0835930:three_prime_UTR | 25.0% |
| ! | ATTAAACAGAGATCTGAAAA+TGG | + | chr5_4:9316158-9316177 | None:intergenic | 25.0% |
| !! | TGTTTTCATGTTTACAAACT+AGG | - | chr5_4:9316297-9316316 | Msa0835930:CDS | 25.0% |
| ! | CAAACATAGCCTAAATAAAA+AGG | + | chr5_4:9316336-9316355 | None:intergenic | 25.0% |
| !!! | CTTTTTATTTAGGCTATGTT+TGG | - | chr5_4:9316334-9316353 | Msa0835930:CDS | 25.0% |
| ! | AAAATTGTTATGAATGTGTC+TGG | + | chr5_4:9316712-9316731 | None:intergenic | 25.0% |
| !! | TTCAATTATATTAGGTTGCT+CGG | + | chr5_4:9317188-9317207 | None:intergenic | 25.0% |
| ! | AAGAAAATCATCTCATATAG+AGG | - | chr5_4:9317596-9317615 | Msa0835930:intron | 25.0% |
| ! | TGTCTAACTAAGAATGTTAA+AGG | + | chr5_4:9317774-9317793 | None:intergenic | 25.0% |
| ! | ACATTCTTAGTTAGACAAAA+AGG | - | chr5_4:9317777-9317796 | Msa0835930:intron | 25.0% |
| ! | TCTTTAATAGATGAAGTCAA+AGG | + | chr5_4:9317849-9317868 | None:intergenic | 25.0% |
| !!! | TGAGTCTATTGTATTTTGAA+TGG | - | chr5_4:9317955-9317974 | Msa0835930:CDS | 25.0% |
| ! | AGAGAAAACTGAAATCAATA+TGG | + | chr5_4:9318017-9318036 | None:intergenic | 25.0% |
| ! | CACTGAAAATATAATAGCTA+TGG | - | chr5_4:9318097-9318116 | Msa0835930:intron | 25.0% |
| !!! | ATTTTAGCTCTGGAATTTTT+GGG | - | chr5_4:9318135-9318154 | Msa0835930:intron | 25.0% |
| !! | CATGGCATATATTTCAATTT+TGG | - | chr5_4:9318312-9318331 | Msa0835930:intron | 25.0% |
| !! | AAGTTTTCTTCTATATTCCA+AGG | + | chr5_4:9318442-9318461 | None:intergenic | 25.0% |
| !! | ATATTTCTAAGCTATACGAA+GGG | + | chr5_4:9318500-9318519 | None:intergenic | 25.0% |
| !! | GTTTCTTATGATTTGACTTT+AGG | + | chr5_4:9318528-9318547 | None:intergenic | 25.0% |
| !!! | AAGTTTTCATCTAAAGTGTA+GGG | + | chr5_4:9318681-9318700 | None:intergenic | 25.0% |
| ! | TAGACATGTAATAATCTTGA+TGG | - | chr5_4:9318973-9318992 | Msa0835930:intron | 25.0% |
| !! | AATGATGCTATAAGTTGAAT+AGG | + | chr5_4:9319981-9320000 | None:intergenic | 25.0% |
| ! | TTACCTTAAGATACAAAAGA+AGG | + | chr5_4:9320103-9320122 | None:intergenic | 25.0% |
| ! | TTTCAAAATTGCACAATTCA+CGG | + | chr5_4:9320183-9320202 | None:intergenic | 25.0% |
| ! | AAATTAAGAAAAGCCTTCTT+TGG | + | chr5_4:9320507-9320526 | None:intergenic | 25.0% |
| !! | AAAGAAGGCTTTTCTTAATT+TGG | - | chr5_4:9320506-9320525 | Msa0835930:intron | 25.0% |
| ! | TCAAATGTAGGCATAAAAAA+TGG | + | chr5_4:9320751-9320770 | None:intergenic | 25.0% |
| !!! | TTTTTTATGCCTACATTTGA+TGG | - | chr5_4:9320751-9320770 | Msa0835930:CDS | 25.0% |
| ! | GAAAAAGCTAAAGTATAAAG+TGG | + | chr5_4:9320982-9321001 | None:intergenic | 25.0% |
| !!! | ATTAGTTCTGAAAAGAAACT+TGG | - | chr5_4:9321010-9321029 | Msa0835930:CDS | 25.0% |
| ! | AAATGATAAAGAAGACAAGT+AGG | + | chr5_4:9321120-9321139 | None:intergenic | 25.0% |
| !! | GAGAACAGAAAAATTTTAGA+TGG | - | chr5_4:9321320-9321339 | Msa0835930:intron | 25.0% |
| ! | AAGAGTAAGATACCTAAAAA+TGG | - | chr5_4:9321623-9321642 | Msa0835930:intron | 25.0% |
| ! | TGCAACTGATTACAAATATA+TGG | - | chr5_4:9321709-9321728 | Msa0835930:intron | 25.0% |
| ! | AAACTTCATAATATTCATGC+AGG | - | chr5_4:9321860-9321879 | Msa0835930:intron | 25.0% |
| ! | ATAATAAAATGCAGGAAAGA+AGG | + | chr5_4:9322137-9322156 | None:intergenic | 25.0% |
| !!! | GGATTTGCAATATTTTGATA+AGG | + | chr5_4:9322225-9322244 | None:intergenic | 25.0% |
| !!! | TGTCCTAATTTTTAGCTCAA+TGG | - | chr5_4:9315779-9315798 | Msa0835930:three_prime_UTR | 30.0% |
| ! | ATTTCCGATCTGTTTTCTTT+CGG | + | chr5_4:9315990-9316009 | None:intergenic | 30.0% |
| ! | TTTTTCCGTTCTTGTATCAA+CGG | - | chr5_4:9316073-9316092 | Msa0835930:CDS | 30.0% |
| TTCATTGATACAACAGATTG+AGG | + | chr5_4:9316131-9316150 | None:intergenic | 30.0% | |
| ! | CAGCATAAGCTAATTGATTT+CGG | + | chr5_4:9316266-9316285 | None:intergenic | 30.0% |
| AAGCTATTCAAGAAAGCTTA+TGG | - | chr5_4:9316465-9316484 | Msa0835930:CDS | 30.0% | |
| ACTTGTTTGAACTTATCTAC+TGG | + | chr5_4:9316685-9316704 | None:intergenic | 30.0% | |
| TAGACTTAATCAACCTATAG+AGG | - | chr5_4:9316809-9316828 | Msa0835930:intron | 30.0% | |
| !! | AGTTTCTAGTATATCTTCCT+GGG | - | chr5_4:9317027-9317046 | Msa0835930:intron | 30.0% |
| TGACGTTGTATAAAGGATTT+AGG | - | chr5_4:9317350-9317369 | Msa0835930:intron | 30.0% | |
| ! | TTGTTGTTGAGGAACATTTA+TGG | + | chr5_4:9317421-9317440 | None:intergenic | 30.0% |
| !! | TCATTTTTCCAATGCATGTA+TGG | - | chr5_4:9317558-9317577 | Msa0835930:CDS | 30.0% |
| AGAACTGCAAAATTGTGTAT+AGG | - | chr5_4:9317640-9317659 | Msa0835930:intron | 30.0% | |
| !! | CAAATTGGTGTTGATTTCTT+AGG | - | chr5_4:9317871-9317890 | Msa0835930:CDS | 30.0% |
| CACATTTAACTCTTTGTAAC+AGG | - | chr5_4:9318043-9318062 | Msa0835930:intron | 30.0% | |
| TTTAACTCTTTGTAACAGGA+AGG | - | chr5_4:9318047-9318066 | Msa0835930:intron | 30.0% | |
| !!! | GATTTTAGCTCTGGAATTTT+TGG | - | chr5_4:9318134-9318153 | Msa0835930:intron | 30.0% |
| !!! | GTTTTTTGAAACTCATCACA+AGG | - | chr5_4:9318286-9318305 | Msa0835930:intron | 30.0% |
| ! | ATTTGCTAGTACTCAAGAAA+TGG | - | chr5_4:9318352-9318371 | Msa0835930:intron | 30.0% |
| TTTGCTAGTACTCAAGAAAT+GGG | - | chr5_4:9318353-9318372 | Msa0835930:intron | 30.0% | |
| AAGGTTGTAAACTTGAAGAA+AGG | + | chr5_4:9318423-9318442 | None:intergenic | 30.0% | |
| ! | TTTCTTCAAGTTTACAACCT+TGG | - | chr5_4:9318422-9318441 | Msa0835930:intron | 30.0% |
| ! | GATATTTCTAAGCTATACGA+AGG | + | chr5_4:9318501-9318520 | None:intergenic | 30.0% |
| !! | CAAGTTTTCATCTAAAGTGT+AGG | + | chr5_4:9318682-9318701 | None:intergenic | 30.0% |
| CTACACTTTAGATGAAAACT+TGG | - | chr5_4:9318680-9318699 | Msa0835930:intron | 30.0% | |
| AGATGAAAACTTGGTATGTT+AGG | - | chr5_4:9318689-9318708 | Msa0835930:intron | 30.0% | |
| TATACAATCTTTGTTCAGAG+AGG | - | chr5_4:9318872-9318891 | Msa0835930:intron | 30.0% | |
| ACATGTAATAATCTTGATGG+TGG | - | chr5_4:9318976-9318995 | Msa0835930:intron | 30.0% | |
| GATTCAAAATTACTAGAGAG+TGG | + | chr5_4:9319043-9319062 | None:intergenic | 30.0% | |
| GGACAAATTCACAAATCAAA+AGG | + | chr5_4:9319144-9319163 | None:intergenic | 30.0% | |
| ACAATCCCAAGAAATCAATA+GGG | + | chr5_4:9319916-9319935 | None:intergenic | 30.0% | |
| AACAATCCCAAGAAATCAAT+AGG | + | chr5_4:9319917-9319936 | None:intergenic | 30.0% | |
| GGCAATTATGATCACTAAAT+GGG | + | chr5_4:9319956-9319975 | None:intergenic | 30.0% | |
| ! | ATGCTATAAGTTGAATAGGA+GGG | + | chr5_4:9319977-9319996 | None:intergenic | 30.0% |
| !! | TTTCTGGTTAAAGGAATCAA+TGG | + | chr5_4:9320257-9320276 | None:intergenic | 30.0% |
| !!! | TACACATCTTTTCTGGTTAA+AGG | + | chr5_4:9320266-9320285 | None:intergenic | 30.0% |
| ! | TGATCAGAAATTGTAATGGA+TGG | + | chr5_4:9320591-9320610 | None:intergenic | 30.0% |
| !! | ATTTTAGTCTTTGCATTACC+AGG | - | chr5_4:9320856-9320875 | Msa0835930:CDS | 30.0% |
| !! | TTTTAGTCTTTGCATTACCA+GGG | - | chr5_4:9320857-9320876 | Msa0835930:CDS | 30.0% |
| ! | AATTCATTTTCATGATCGAC+AGG | - | chr5_4:9320915-9320934 | Msa0835930:CDS | 30.0% |
| ! | ATTCATTTTCATGATCGACA+GGG | - | chr5_4:9320916-9320935 | Msa0835930:CDS | 30.0% |
| !! | TTCTACTGGTTCGTTTAAAA+TGG | - | chr5_4:9320943-9320962 | Msa0835930:CDS | 30.0% |
| ! | TTTAAAATGGCTACTTCTTC+AGG | - | chr5_4:9320956-9320975 | Msa0835930:CDS | 30.0% |
| ! | GAGAATAAATCTGGAATGTA+TGG | + | chr5_4:9321196-9321215 | None:intergenic | 30.0% |
| AGCTTAGAAGAGAATAAATC+TGG | + | chr5_4:9321205-9321224 | None:intergenic | 30.0% | |
| ! | CAGAAAAATTTTAGATGGCT+CGG | - | chr5_4:9321325-9321344 | Msa0835930:intron | 30.0% |
| GAAAAAGTTCAGTGAATCAA+CGG | + | chr5_4:9321428-9321447 | None:intergenic | 30.0% | |
| GACATAAATAATGTCTCATC+TGG | - | chr5_4:9321575-9321594 | Msa0835930:intron | 30.0% | |
| CTCTTACTTGAATTAGATGT+TGG | + | chr5_4:9321608-9321627 | None:intergenic | 30.0% | |
| !! | ACATCATCATCTCCATTTTT+AGG | + | chr5_4:9321638-9321657 | None:intergenic | 30.0% |
| !!! | GATGCTTCAGTTTTTTCTTT+TGG | - | chr5_4:9321941-9321960 | Msa0835930:five_prime_UTR | 30.0% |
| GTCATTTGACAACAAAAAAG+GGG | + | chr5_4:9322115-9322134 | None:intergenic | 30.0% | |
| GGTCATTTGACAACAAAAAA+GGG | + | chr5_4:9322116-9322135 | None:intergenic | 30.0% | |
| AGGTCATTTGACAACAAAAA+AGG | + | chr5_4:9322117-9322136 | None:intergenic | 30.0% | |
| TAGCTCAATGGATAAAGTGA+TGG | - | chr5_4:9315791-9315810 | Msa0835930:three_prime_UTR | 35.0% | |
| GATTTGTAGAGATTGAGGTT+CGG | + | chr5_4:9315927-9315946 | None:intergenic | 35.0% | |
| !!! | GGGAATAACGGTTTTTTGAA+CGG | + | chr5_4:9315966-9315985 | None:intergenic | 35.0% |
| ! | TTTTCTTTCGGAGGGAATAA+CGG | + | chr5_4:9315978-9315997 | None:intergenic | 35.0% |
| AATAATAGTTACACCGTCAC+CGG | - | chr5_4:9316007-9316026 | Msa0835930:CDS | 35.0% | |
| GTAAACATGAAAACACCTAC+AGG | + | chr5_4:9316292-9316311 | None:intergenic | 35.0% | |
| !! | TTCATCGCGCCTTTTTATTT+AGG | - | chr5_4:9316324-9316343 | Msa0835930:CDS | 35.0% |
| !! | TAAGGGTTTTATGCCTCTAT+AGG | + | chr5_4:9316825-9316844 | None:intergenic | 35.0% |
| TAAAGTTCAGTCTTCGAAGA+TGG | + | chr5_4:9316950-9316969 | None:intergenic | 35.0% | |
| TATACTAGAAACTGGTGACA+AGG | + | chr5_4:9317020-9317039 | None:intergenic | 35.0% | |
| CAGGAAGATATACTAGAAAC+TGG | + | chr5_4:9317028-9317047 | None:intergenic | 35.0% | |
| !! | CAGTTTCTAGTATATCTTCC+TGG | - | chr5_4:9317026-9317045 | Msa0835930:intron | 35.0% |
| TGAATCATTCACTAAAGGGT+TGG | - | chr5_4:9317204-9317223 | Msa0835930:intron | 35.0% | |
| TCAAAATAAACGCAGATACC+AGG | - | chr5_4:9317285-9317304 | Msa0835930:intron | 35.0% | |
| GTGTAAATTGTTAACTGACC+TGG | + | chr5_4:9317306-9317325 | None:intergenic | 35.0% | |
| TTATACAACGTCAGTAACAC+AGG | + | chr5_4:9317343-9317362 | None:intergenic | 35.0% | |
| ! | GTGTTACTGACGTTGTATAA+AGG | - | chr5_4:9317343-9317362 | Msa0835930:intron | 35.0% |
| !! | TTTACAAGAGCTTGTTGTTG+AGG | + | chr5_4:9317432-9317451 | None:intergenic | 35.0% |
| ! | ACACAAAGTACCAAAACTTC+AGG | - | chr5_4:9317530-9317549 | Msa0835930:CDS | 35.0% |
| TTTCATAGCCATACATGCAT+TGG | + | chr5_4:9317569-9317588 | None:intergenic | 35.0% | |
| !! | TTGCAGTTCTAGTTTGTAAC+AGG | + | chr5_4:9317630-9317649 | None:intergenic | 35.0% |
| AAACATCTGCTTAGAATCCT+AGG | - | chr5_4:9317717-9317736 | Msa0835930:CDS | 35.0% | |
| CATATCAATTCTTCTGTAGG+AGG | + | chr5_4:9317750-9317769 | None:intergenic | 35.0% | |
| GGACATATCAATTCTTCTGT+AGG | + | chr5_4:9317753-9317772 | None:intergenic | 35.0% | |
| ! | TGATGATGCCTTTAACATGA+CGG | + | chr5_4:9317812-9317831 | None:intergenic | 35.0% |
| ATAATAGCTATGGGATTTCC+TGG | - | chr5_4:9318107-9318126 | Msa0835930:intron | 35.0% | |
| !!! | TGGAATTTTTGGGTACATTG+AGG | - | chr5_4:9318145-9318164 | Msa0835930:intron | 35.0% |
| ATGACTGAATCTGGTTATGA+GGG | + | chr5_4:9318196-9318215 | None:intergenic | 35.0% | |
| ! | AATTGACTCATGACTGAATC+TGG | + | chr5_4:9318205-9318224 | None:intergenic | 35.0% |
| AAACTCATCACAAGGTAACA+TGG | - | chr5_4:9318294-9318313 | Msa0835930:intron | 35.0% | |
| TTTAGTCTCTTGAAACCTGT+AGG | - | chr5_4:9318837-9318856 | Msa0835930:intron | 35.0% | |
| TTAGTCTCTTGAAACCTGTA+GGG | - | chr5_4:9318838-9318857 | Msa0835930:intron | 35.0% | |
| ATACTTTGTACTTTCCCTAC+AGG | + | chr5_4:9318855-9318874 | None:intergenic | 35.0% | |
| AATAAAACTATACCTTCCCC+TGG | + | chr5_4:9318918-9318937 | None:intergenic | 35.0% | |
| ATTTGCACTATGGCACTAAT+TGG | - | chr5_4:9318940-9318959 | Msa0835930:intron | 35.0% | |
| TGAACATTTCATGCACTTCT+TGG | - | chr5_4:9319092-9319111 | Msa0835930:CDS | 35.0% | |
| !! | ATCATATAGTGGTGTTGACT+TGG | - | chr5_4:9319267-9319286 | Msa0835930:intron | 35.0% |
| !! | TCATATAGTGGTGTTGACTT+GGG | - | chr5_4:9319268-9319287 | Msa0835930:intron | 35.0% |
| TATCAATAGTGAGTGTACAC+TGG | + | chr5_4:9319646-9319665 | None:intergenic | 35.0% | |
| GATTTCTTGGGATTGTTTAC+AGG | - | chr5_4:9319920-9319939 | Msa0835930:intron | 35.0% | |
| GGGCAATTATGATCACTAAA+TGG | + | chr5_4:9319957-9319976 | None:intergenic | 35.0% | |
| ! | GATGCTATAAGTTGAATAGG+AGG | + | chr5_4:9319978-9319997 | None:intergenic | 35.0% |
| TTTGTCGAAGTGCATATTCA+TGG | - | chr5_4:9320000-9320019 | Msa0835930:intron | 35.0% | |
| AAGTGCATATTCATGGTTGA+AGG | - | chr5_4:9320007-9320026 | Msa0835930:intron | 35.0% | |
| ! | AATGAACAACGACCACATTT+TGG | + | chr5_4:9320040-9320059 | None:intergenic | 35.0% |
| TGTTCATTGTAAAGCTGGTA+TGG | - | chr5_4:9320052-9320071 | Msa0835930:intron | 35.0% | |
| GTTCATTGTAAAGCTGGTAT+GGG | - | chr5_4:9320053-9320072 | Msa0835930:intron | 35.0% | |
| ! | CAGCCTTCTTTTGTATCTTA+AGG | - | chr5_4:9320097-9320116 | Msa0835930:intron | 35.0% |
| AACCAGAAAAGATGTGTAGA+TGG | - | chr5_4:9320268-9320287 | Msa0835930:intron | 35.0% | |
| ! | TTCCATCTACACATCTTTTC+TGG | + | chr5_4:9320273-9320292 | None:intergenic | 35.0% |
| GAAAAGATGTGTAGATGGAA+AGG | - | chr5_4:9320273-9320292 | Msa0835930:intron | 35.0% | |
| CAATGTACCAAATCCAAAGA+AGG | - | chr5_4:9320491-9320510 | Msa0835930:intron | 35.0% | |
| AGAAAAGCCTTCTTTGGATT+TGG | + | chr5_4:9320501-9320520 | None:intergenic | 35.0% | |
| ! | TTCTTAATTTGGACTTCCAC+AGG | - | chr5_4:9320517-9320536 | Msa0835930:intron | 35.0% |
| TGATGTCTTCACTTATTCTC+AGG | - | chr5_4:9320668-9320687 | Msa0835930:intron | 35.0% | |
| ACCATTAGATCCTTTGTCTT+GGG | + | chr5_4:9320719-9320738 | None:intergenic | 35.0% | |
| TACCATTAGATCCTTTGTCT+TGG | + | chr5_4:9320720-9320739 | None:intergenic | 35.0% | |
| ! | ATTTTCAGCCAGAAGATTTC+TGG | - | chr5_4:9320812-9320831 | Msa0835930:CDS | 35.0% |
| TGGATCAATGCATCAAAGAA+AGG | - | chr5_4:9320832-9320851 | Msa0835930:CDS | 35.0% | |
| ! | TTTAGTCTTTGCATTACCAG+GGG | - | chr5_4:9320858-9320877 | Msa0835930:CDS | 35.0% |
| CTTCTAAGCTGTGTAATGTA+TGG | - | chr5_4:9321215-9321234 | Msa0835930:intron | 35.0% | |
| TTAATACGTCAGTTTCTCCT+TGG | - | chr5_4:9321272-9321291 | Msa0835930:intron | 35.0% | |
| !! | GGATCTTGATGATTTTGACA+AGG | - | chr5_4:9321346-9321365 | Msa0835930:intron | 35.0% |
| TATAGGGACAAGTGAATTCA+AGG | - | chr5_4:9321907-9321926 | Msa0835930:intron | 35.0% | |
| !! | AGATTTTGAGAGTGATTGAG+AGG | - | chr5_4:9321970-9321989 | Msa0835930:five_prime_UTR | 35.0% |
| TAAAAGGATCAGGCACATTA+TGG | - | chr5_4:9322074-9322093 | Msa0835930:five_prime_UTR | 35.0% | |
| TGATTAGAGTGTAGAGTCAC+CGG | + | chr5_4:9315887-9315906 | None:intergenic | 40.0% | |
| ATTGAGGTTCGGATCAATGT+AGG | + | chr5_4:9315916-9315935 | None:intergenic | 40.0% | |
| CGTGAGATTTGTAGAGATTG+AGG | + | chr5_4:9315932-9315951 | None:intergenic | 40.0% | |
| ACGGAAAAACGAAAGAGAAG+TGG | + | chr5_4:9316062-9316081 | None:intergenic | 40.0% | |
| AAACCGTTTGAGAGAGCTTA+CGG | + | chr5_4:9316648-9316667 | None:intergenic | 40.0% | |
| AAACTGCAAGTGCCTTAGAT+TGG | - | chr5_4:9316871-9316890 | Msa0835930:intron | 40.0% | |
| GCATTTGAGTGACTCATTGA+TGG | - | chr5_4:9316913-9316932 | Msa0835930:intron | 40.0% | |
| ! | ATTTTCAGCAGGTACTTTGG+CGG | + | chr5_4:9316975-9316994 | None:intergenic | 40.0% |
| !! | GTCATTTTCAGCAGGTACTT+TGG | + | chr5_4:9316978-9316997 | None:intergenic | 40.0% |
| CATTTGCTCGTCTTACAAGT+GGG | - | chr5_4:9317113-9317132 | Msa0835930:CDS | 40.0% | |
| ATCATTCACTAAAGGGTTGG+TGG | - | chr5_4:9317207-9317226 | Msa0835930:intron | 40.0% | |
| CTCTTCAAAGGAAGCAGTAA+AGG | - | chr5_4:9317231-9317250 | Msa0835930:intron | 40.0% | |
| AGAAACAATATGCCGTGCTT+TGG | + | chr5_4:9317266-9317285 | None:intergenic | 40.0% | |
| AACACAGGCAAAATTGAAGC+AGG | + | chr5_4:9317328-9317347 | None:intergenic | 40.0% | |
| ! | AATGAGTGTGCCTGAAGTTT+TGG | + | chr5_4:9317543-9317562 | None:intergenic | 40.0% |
| CTGTAGGAGGTAATAAACCT+AGG | + | chr5_4:9317737-9317756 | None:intergenic | 40.0% | |
| ATGATGCCTTTAACATGACG+GGG | + | chr5_4:9317810-9317829 | None:intergenic | 40.0% | |
| GATGATGCCTTTAACATGAC+GGG | + | chr5_4:9317811-9317830 | None:intergenic | 40.0% | |
| AACTCTTTGTAACAGGAAGG+TGG | - | chr5_4:9318050-9318069 | Msa0835930:intron | 40.0% | |
| ! | ACAGGAAGGTGGATTTGATT+TGG | - | chr5_4:9318061-9318080 | Msa0835930:intron | 40.0% |
| TGACTGAATCTGGTTATGAG+GGG | + | chr5_4:9318195-9318214 | None:intergenic | 40.0% | |
| CATGACTGAATCTGGTTATG+AGG | + | chr5_4:9318197-9318216 | None:intergenic | 40.0% | |
| TTAAGAGAGAACTGTGTTGC+AGG | - | chr5_4:9318229-9318248 | Msa0835930:intron | 40.0% | |
| TAAGAGAGAACTGTGTTGCA+GGG | - | chr5_4:9318230-9318249 | Msa0835930:intron | 40.0% | |
| AGCTATACGAAGGGATATAC+TGG | + | chr5_4:9318491-9318510 | None:intergenic | 40.0% | |
| !! | TACGATGGATCACTTTTCCA+GGG | - | chr5_4:9318898-9318917 | Msa0835930:intron | 40.0% |
| TTAGACTATGTTCCAGTTGG+AGG | + | chr5_4:9319013-9319032 | None:intergenic | 40.0% | |
| TGGTTAGACTATGTTCCAGT+TGG | + | chr5_4:9319016-9319035 | None:intergenic | 40.0% | |
| AATTACTAGAGAGTGGCAGA+TGG | + | chr5_4:9319036-9319055 | None:intergenic | 40.0% | |
| GCATCACAACTCAAAACTGA+TGG | + | chr5_4:9319165-9319184 | None:intergenic | 40.0% | |
| CTAAGAGTCTGTGAAACTAG+AGG | + | chr5_4:9319444-9319463 | None:intergenic | 40.0% | |
| ! | CTCTAGTTTCACAGACTCTT+AGG | - | chr5_4:9319442-9319461 | Msa0835930:intron | 40.0% |
| !! | GTCTGCCCTATTGATTTCTT+GGG | - | chr5_4:9319908-9319927 | Msa0835930:intron | 40.0% |
| TGCATATTCATGGTTGAAGG+AGG | - | chr5_4:9320010-9320029 | Msa0835930:intron | 40.0% | |
| GAAGGAGGATATCCAAAATG+TGG | - | chr5_4:9320025-9320044 | Msa0835930:intron | 40.0% | |
| GTCGTTGTTCATTGTAAAGC+TGG | - | chr5_4:9320047-9320066 | Msa0835930:intron | 40.0% | |
| ATTGTAAAGCTGGTATGGGA+AGG | - | chr5_4:9320057-9320076 | Msa0835930:intron | 40.0% | |
| CGGACTTTAACACACTTCAA+CGG | - | chr5_4:9320428-9320447 | Msa0835930:intron | 40.0% | |
| AGTTTCATCTTACCTTCGTC+CGG | + | chr5_4:9320465-9320484 | None:intergenic | 40.0% | |
| GCTTCACAAATGCCCTTATT+GGG | - | chr5_4:9320560-9320579 | Msa0835930:intron | 40.0% | |
| TGGATGGTCTAACCCAATAA+GGG | + | chr5_4:9320575-9320594 | None:intergenic | 40.0% | |
| ATGGATGGTCTAACCCAATA+AGG | + | chr5_4:9320576-9320595 | None:intergenic | 40.0% | |
| !! | TAGAAAGCATCCCAAGACAA+AGG | - | chr5_4:9320706-9320725 | Msa0835930:CDS | 40.0% |
| TCCCAAGACAAAGGATCTAA+TGG | - | chr5_4:9320715-9320734 | Msa0835930:CDS | 40.0% | |
| ATGCGTGTACCATCAAATGT+AGG | + | chr5_4:9320763-9320782 | None:intergenic | 40.0% | |
| ! | GCATTGATCCAGAAATCTTC+TGG | + | chr5_4:9320823-9320842 | None:intergenic | 40.0% |
| GTTGTGATGGTAGACTATGA+TGG | - | chr5_4:9321512-9321531 | Msa0835930:intron | 40.0% | |
| ACCACCAACATGGAATCTAT+AGG | - | chr5_4:9321890-9321909 | Msa0835930:intron | 40.0% | |
| CCACCAACATGGAATCTATA+GGG | - | chr5_4:9321891-9321910 | Msa0835930:intron | 40.0% | |
| TGTCCCTATAGATTCCATGT+TGG | + | chr5_4:9321897-9321916 | None:intergenic | 40.0% | |
| !! | TTTTGAGAGTGATTGAGAGG+AGG | - | chr5_4:9321973-9321992 | Msa0835930:five_prime_UTR | 40.0% |
| TTGTGTATAGCCCTTTACAC+CGG | - | chr5_4:9322036-9322055 | Msa0835930:five_prime_UTR | 40.0% | |
| TGTTAGAATGTCCTCAAGGA+CGG | + | chr5_4:9322201-9322220 | None:intergenic | 40.0% | |
| ! | CCGATCTGTTTTCTTTCGGA+GGG | + | chr5_4:9315986-9316005 | None:intergenic | 45.0% |
| CCCTCCGAAAGAAAACAGAT+CGG | - | chr5_4:9315983-9316002 | Msa0835930:exon | 45.0% | |
| ! | TCCGATCTGTTTTCTTTCGG+AGG | + | chr5_4:9315987-9316006 | None:intergenic | 45.0% |
| AAGAGAAGTGGATCGCTTAC+CGG | + | chr5_4:9316050-9316069 | None:intergenic | 45.0% | |
| TCGCACCGTTGATACAAGAA+CGG | + | chr5_4:9316081-9316100 | None:intergenic | 45.0% | |
| CAGCGCAAAAACATCAGCAT+TGG | + | chr5_4:9316183-9316202 | None:intergenic | 45.0% | |
| TAGCTTATGCTGTAGCCTGT+AGG | - | chr5_4:9316274-9316293 | Msa0835930:CDS | 45.0% | |
| TGACCGTAAGCTCTCTCAAA+CGG | - | chr5_4:9316642-9316661 | Msa0835930:CDS | 45.0% | |
| AGTTCAGTCTTCGAAGATGG+AGG | + | chr5_4:9316947-9316966 | None:intergenic | 45.0% | |
| !!! | CGTGCATTGTCATTTTCAGC+AGG | + | chr5_4:9316986-9317005 | None:intergenic | 45.0% |
| CTAGAAACTGGTGACAAGGA+TGG | + | chr5_4:9317016-9317035 | None:intergenic | 45.0% | |
| AAACTTCAGATTTCTCGCCC+AGG | + | chr5_4:9317047-9317066 | None:intergenic | 45.0% | |
| ! | TGGGCGAGAAATCTGAAGTT+TGG | - | chr5_4:9317046-9317065 | Msa0835930:CDS | 45.0% |
| ! | GGGCGAGAAATCTGAAGTTT+GGG | - | chr5_4:9317047-9317066 | Msa0835930:CDS | 45.0% |
| ! | GGCGAGAAATCTGAAGTTTG+GGG | - | chr5_4:9317048-9317067 | Msa0835930:CDS | 45.0% |
| ! | AGAAATCTGAAGTTTGGGGC+TGG | - | chr5_4:9317052-9317071 | Msa0835930:CDS | 45.0% |
| AACTCACAGACTGAGAACAG+TGG | - | chr5_4:9317082-9317101 | Msa0835930:CDS | 45.0% | |
| GCATTTGCTCGTCTTACAAG+TGG | - | chr5_4:9317112-9317131 | Msa0835930:CDS | 45.0% | |
| CTCGTAGCAAGCTCATTTGA+GGG | + | chr5_4:9317154-9317173 | None:intergenic | 45.0% | |
| ATAGCTATGGGATTTCCTGG+TGG | - | chr5_4:9318110-9318129 | Msa0835930:intron | 45.0% | |
| AAGAGAGAACTGTGTTGCAG+GGG | - | chr5_4:9318231-9318250 | Msa0835930:intron | 45.0% | |
| GGGGTTCTATCGAAATCACA+TGG | - | chr5_4:9318250-9318269 | Msa0835930:intron | 45.0% | |
| TTGCTGTATGAGCTTGTAGG+TGG | + | chr5_4:9318613-9318632 | None:intergenic | 45.0% | |
| TGGTTGCTGTATGAGCTTGT+AGG | + | chr5_4:9318616-9318635 | None:intergenic | 45.0% | |
| TGTTCAGAGAGGTTGTACGA+TGG | - | chr5_4:9318883-9318902 | Msa0835930:intron | 45.0% | |
| !! | GTACGATGGATCACTTTTCC+AGG | - | chr5_4:9318897-9318916 | Msa0835930:intron | 45.0% |
| !! | ACGATGGATCACTTTTCCAG+GGG | - | chr5_4:9318899-9318918 | Msa0835930:intron | 45.0% |
| TCCAGTTGGAGGCAAATGAT+GGG | + | chr5_4:9319002-9319021 | None:intergenic | 45.0% | |
| TTCCAGTTGGAGGCAAATGA+TGG | + | chr5_4:9319003-9319022 | None:intergenic | 45.0% | |
| !! | CGTCTGCCCTATTGATTTCT+TGG | - | chr5_4:9319907-9319926 | Msa0835930:intron | 45.0% |
| ! | GAGTTGACTTCAGAGACTTG+AGG | - | chr5_4:9320130-9320149 | Msa0835930:intron | 45.0% |
| GTTTCATCTTACCTTCGTCC+GGG | + | chr5_4:9320464-9320483 | None:intergenic | 45.0% | |
| GGCTTCACAAATGCCCTTAT+TGG | - | chr5_4:9320559-9320578 | Msa0835930:intron | 45.0% | |
| ATCGACAGGGAGATTTCTAC+TGG | - | chr5_4:9320929-9320948 | Msa0835930:CDS | 45.0% | |
| TTGTGTTCATCCAACTGCCA+AGG | + | chr5_4:9321292-9321311 | None:intergenic | 45.0% | |
| AGCTGGGATCTTTCTCTGAA+GGG | + | chr5_4:9321474-9321493 | None:intergenic | 45.0% | |
| !! | AGGGTTGACTTTTCCAGGTA+GGG | + | chr5_4:9321540-9321559 | None:intergenic | 45.0% |
| AAAGTCAACCCTGCAAGCAA+AGG | - | chr5_4:9321548-9321567 | Msa0835930:intron | 45.0% | |
| TGTCAGATCCTTTGCTTGCA+GGG | + | chr5_4:9321559-9321578 | None:intergenic | 45.0% | |
| ATGTCAGATCCTTTGCTTGC+AGG | + | chr5_4:9321560-9321579 | None:intergenic | 45.0% | |
| ATTCTCAGAGAGCGATGAAG+AGG | - | chr5_4:9321658-9321677 | Msa0835930:intron | 45.0% | |
| !! | GATTCCATGTTGGTGGTGTT+AGG | + | chr5_4:9321887-9321906 | None:intergenic | 45.0% |
| CCCTATAGATTCCATGTTGG+TGG | + | chr5_4:9321894-9321913 | None:intergenic | 45.0% | |
| TGTGTATAGCCCTTTACACC+GGG | - | chr5_4:9322037-9322056 | Msa0835930:five_prime_UTR | 45.0% | |
| TTTACCTGTGGGTATGATCC+CGG | + | chr5_4:9322058-9322077 | None:intergenic | 45.0% | |
| GGATCATACCCACAGGTAAA+AGG | - | chr5_4:9322058-9322077 | Msa0835930:five_prime_UTR | 45.0% | |
| TACCCACAGGTAAAAGGATC+AGG | - | chr5_4:9322064-9322083 | Msa0835930:five_prime_UTR | 45.0% | |
| ! | TGCCTGATCCTTTTACCTGT+GGG | + | chr5_4:9322069-9322088 | None:intergenic | 45.0% |
| ! | AGGGTGTTAGAATGTCCTCA+AGG | + | chr5_4:9322205-9322224 | None:intergenic | 45.0% |
| AGTCTTCGAAGATGGAGGAG+CGG | + | chr5_4:9316942-9316961 | None:intergenic | 50.0% | |
| GACTGAGAACAGTGGCATGT+CGG | - | chr5_4:9317090-9317109 | Msa0835930:CDS | 50.0% | |
| GCTCGTCTTACAAGTGGGAT+TGG | - | chr5_4:9317118-9317137 | Msa0835930:CDS | 50.0% | |
| GCTCGTAGCAAGCTCATTTG+AGG | + | chr5_4:9317155-9317174 | None:intergenic | 50.0% | |
| !! | AGGGTTGGTGGACTCTTCAA+AGG | - | chr5_4:9317219-9317238 | Msa0835930:intron | 50.0% |
| CGTGTTCCCCGTCATGTTAA+AGG | - | chr5_4:9317801-9317820 | Msa0835930:intron | 50.0% | |
| CCAGAGCTAAAATCACCACC+AGG | + | chr5_4:9318128-9318147 | None:intergenic | 50.0% | |
| !!! | CCTGGTGGTGATTTTAGCTC+TGG | - | chr5_4:9318125-9318144 | Msa0835930:intron | 50.0% |
| !! | TGGATCACTTTTCCAGGGGA+AGG | - | chr5_4:9318903-9318922 | Msa0835930:intron | 50.0% |
| !! | CAAGGTCTCGGTGCCAATTT+AGG | - | chr5_4:9319311-9319330 | Msa0835930:intron | 50.0% |
| CACGAGACTGAGACTTCTGA+AGG | - | chr5_4:9319691-9319710 | Msa0835930:CDS | 50.0% | |
| AAAGCTGGTATGGGAAGGAC+AGG | - | chr5_4:9320062-9320081 | Msa0835930:intron | 50.0% | |
| TCAATGGCTTCCTCAGCAGT+GGG | + | chr5_4:9320241-9320260 | None:intergenic | 50.0% | |
| ATCAATGGCTTCCTCAGCAG+TGG | + | chr5_4:9320242-9320261 | None:intergenic | 50.0% | |
| TTCCACAGGTGTATGCTGAG+AGG | - | chr5_4:9320531-9320550 | Msa0835930:intron | 50.0% | |
| TCCACAGGTGTATGCTGAGA+GGG | - | chr5_4:9320532-9320551 | Msa0835930:intron | 50.0% | |
| GGTGTATGCTGAGAGGGTTT+CGG | - | chr5_4:9320538-9320557 | Msa0835930:intron | 50.0% | |
| CCAACCAATTCTGTCAGACC+TGG | + | chr5_4:9320886-9320905 | None:intergenic | 50.0% | |
| CCAGGTCTGACAGAATTGGT+TGG | - | chr5_4:9320883-9320902 | Msa0835930:CDS | 50.0% | |
| CTGGAATGTATGGCAGAGCT+GGG | + | chr5_4:9321186-9321205 | None:intergenic | 50.0% | |
| ! | TCTGGAATGTATGGCAGAGC+TGG | + | chr5_4:9321187-9321206 | None:intergenic | 50.0% |
| GTCAGTTTCTCCTTGGCAGT+TGG | - | chr5_4:9321279-9321298 | Msa0835930:intron | 50.0% | |
| GAGCTGGGATCTTTCTCTGA+AGG | + | chr5_4:9321475-9321494 | None:intergenic | 50.0% | |
| AGAGAAAGATCCCAGCTCCA+GGG | - | chr5_4:9321477-9321496 | Msa0835930:intron | 50.0% | |
| GTTCCAGGTCGAAGTTGTGA+TGG | - | chr5_4:9321499-9321518 | Msa0835930:intron | 50.0% | |
| CTACCATCACAACTTCGACC+TGG | + | chr5_4:9321505-9321524 | None:intergenic | 50.0% | |
| !! | CAGGGTTGACTTTTCCAGGT+AGG | + | chr5_4:9321541-9321560 | None:intergenic | 50.0% |
| !! | CTTGCAGGGTTGACTTTTCC+AGG | + | chr5_4:9321545-9321564 | None:intergenic | 50.0% |
| AGCGATGAAGAGGAGACCAA+GGG | - | chr5_4:9321668-9321687 | Msa0835930:intron | 50.0% | |
| AGGAGACCAAGGGAACACAA+AGG | - | chr5_4:9321678-9321697 | Msa0835930:intron | 50.0% | |
| AGACCAAGGGAACACAAAGG+AGG | - | chr5_4:9321681-9321700 | Msa0835930:intron | 50.0% | |
| GACCAAGGGAACACAAAGGA+GGG | - | chr5_4:9321682-9321701 | Msa0835930:intron | 50.0% | |
| TTCCCTCCTTTGTGTTCCCT+TGG | + | chr5_4:9321687-9321706 | None:intergenic | 50.0% | |
| GGAACCTCATCAAGCATCTG+AGG | - | chr5_4:9321730-9321749 | Msa0835930:intron | 50.0% | |
| AGGCCACTACTGACCATGTA+GGG | - | chr5_4:9321750-9321769 | Msa0835930:intron | 50.0% | |
| CATCCCTACATGGTCAGTAG+TGG | + | chr5_4:9321756-9321775 | None:intergenic | 50.0% | |
| AGGTCCTAACACCACCAACA+TGG | - | chr5_4:9321880-9321899 | Msa0835930:intron | 50.0% | |
| GGGTATGATCCCGGTGTAAA+GGG | + | chr5_4:9322049-9322068 | None:intergenic | 50.0% | |
| TGGGTATGATCCCGGTGTAA+AGG | + | chr5_4:9322050-9322069 | None:intergenic | 50.0% | |
| ! | GTGCCTGATCCTTTTACCTG+TGG | + | chr5_4:9322070-9322089 | None:intergenic | 50.0% |
| GGACGGAGAGGAACATCATA+CGG | + | chr5_4:9322184-9322203 | None:intergenic | 50.0% | |
| GCAAACACTCTGTTCCGTGC+CGG | - | chr5_4:9315865-9315884 | Msa0835930:three_prime_UTR | 55.0% | |
| AGAGTGTAGAGTCACCGGCA+CGG | + | chr5_4:9315882-9315901 | None:intergenic | 55.0% | |
| GTCTTCGAAGATGGAGGAGC+GGG | + | chr5_4:9316941-9316960 | None:intergenic | 55.0% | |
| !! | GAGCTTGCTACGAGCAGTTC+AGG | - | chr5_4:9317160-9317179 | Msa0835930:intron | 55.0% |
| AGGCAGTGCAGACCAAAGCA+CGG | - | chr5_4:9317251-9317270 | Msa0835930:intron | 55.0% | |
| GCCCATCATTTGCCTCCAAC+TGG | - | chr5_4:9318998-9319017 | Msa0835930:intron | 55.0% | |
| !! | GTGGTGTTGACTTGGGACCT+TGG | - | chr5_4:9319275-9319294 | Msa0835930:intron | 55.0% |
| CTTGAGAGGAGGACACTCCA+AGG | + | chr5_4:9319295-9319314 | None:intergenic | 55.0% | |
| ! | CTTGGAGTGTCCTCCTCTCA+AGG | - | chr5_4:9319293-9319312 | Msa0835930:intron | 55.0% |
| GTGTCCTCCTCTCAAGGTCT+CGG | - | chr5_4:9319299-9319318 | Msa0835930:intron | 55.0% | |
| ! | ATTGGCACCGAGACCTTGAG+AGG | + | chr5_4:9319309-9319328 | None:intergenic | 55.0% |
| ! | GCAGTTTTTCCCCACTGCTG+AGG | - | chr5_4:9320228-9320247 | Msa0835930:intron | 55.0% |
| CAATGGCTTCCTCAGCAGTG+GGG | + | chr5_4:9320240-9320259 | None:intergenic | 55.0% | |
| TTCAACGGACAAGTCCAGCC+CGG | - | chr5_4:9320443-9320462 | Msa0835930:intron | 55.0% | |
| ACCCTCTCAGCATACACCTG+TGG | + | chr5_4:9320536-9320555 | None:intergenic | 55.0% | |
| TTTGCATTACCAGGGGAGCC+AGG | - | chr5_4:9320865-9320884 | Msa0835930:CDS | 55.0% | |
| GGAGCCAGGTCTGACAGAAT+TGG | - | chr5_4:9320879-9320898 | Msa0835930:CDS | 55.0% | |
| CAGAGAAAGATCCCAGCTCC+AGG | - | chr5_4:9321476-9321495 | Msa0835930:intron | 55.0% | |
| ACAACTTCGACCTGGAACCC+TGG | + | chr5_4:9321497-9321516 | None:intergenic | 55.0% | |
| GACTATGATGGCACCCTACC+TGG | - | chr5_4:9321524-9321543 | Msa0835930:intron | 55.0% | |
| GAGCGATGAAGAGGAGACCA+AGG | - | chr5_4:9321667-9321686 | Msa0835930:intron | 55.0% | |
| GTGGCCTCAGATGCTTGATG+AGG | + | chr5_4:9321737-9321756 | None:intergenic | 55.0% | |
| GAGGCCACTACTGACCATGT+AGG | - | chr5_4:9321749-9321768 | Msa0835930:intron | 55.0% | |
| TACACCGGGATCATACCCAC+AGG | - | chr5_4:9322051-9322070 | Msa0835930:five_prime_UTR | 55.0% | |
| GATGTTCCTCTCCGTCCTTG+AGG | - | chr5_4:9322187-9322206 | Msa0835930:five_prime_UTR | 55.0% | |
| GAATGTCCTCAAGGACGGAG+AGG | + | chr5_4:9322196-9322215 | None:intergenic | 55.0% | |
| GGCGAGTAGTTAGCCGGTGA+CGG | + | chr5_4:9316023-9316042 | None:intergenic | 60.0% | |
| AGTGGATCGCTTACCGGCGA+CGG | + | chr5_4:9316044-9316063 | None:intergenic | 60.0% | |
| CATCTTACCTTCGTCCGGGC+TGG | + | chr5_4:9320460-9320479 | None:intergenic | 60.0% | |
| CGCGCGACAACATCCCTACA+TGG | + | chr5_4:9321766-9321785 | None:intergenic | 60.0% | |
| AGGGATGTTGTCGCGCGCAA+CGG | - | chr5_4:9321769-9321788 | Msa0835930:intron | 60.0% | |
| CCAGCAGCATGACGAACGCA+CGG | - | chr5_4:9321805-9321824 | Msa0835930:intron | 60.0% | |
| GGCGACGGCGAGTAGTTAGC+CGG | + | chr5_4:9316029-9316048 | None:intergenic | 65.0% | |
| GGCTAACTACTCGCCGTCGC+CGG | - | chr5_4:9316028-9316047 | Msa0835930:CDS | 65.0% | |
| ! | GGCACCGAGACCTTGAGAGG+AGG | + | chr5_4:9319306-9319325 | None:intergenic | 65.0% |
| GACAAGTCCAGCCCGGACGA+AGG | - | chr5_4:9320450-9320469 | Msa0835930:intron | 65.0% | |
| TCTGTCAGACCTGGCTCCCC+TGG | + | chr5_4:9320877-9320896 | None:intergenic | 65.0% | |
| GATCCCAGCTCCAGGGTTCC+AGG | - | chr5_4:9321484-9321503 | Msa0835930:intron | 65.0% | |
| CGACCTGGAACCCTGGAGCT+GGG | + | chr5_4:9321490-9321509 | None:intergenic | 65.0% | |
| TCGACCTGGAACCCTGGAGC+TGG | + | chr5_4:9321491-9321510 | None:intergenic | 65.0% | |
| CCGTGCGTTCGTCATGCTGC+TGG | + | chr5_4:9321808-9321827 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9315744 | 9322245 | 9315744 | ID=Msa0835930;Name=Msa0835930 |
| chr5_4 | mRNA | 9315744 | 9322245 | 9315744 | ID=Msa0835930-mRNA-1;Parent=Msa0835930;Name=Msa0835930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=329|1|1|1|0.91|0.84|13|257|587 |
| chr5_4 | exon | 9315744 | 9316510 | 9315744 | ID=Msa0835930-mRNA-1:exon:4112;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9316622 | 9316691 | 9316622 | ID=Msa0835930-mRNA-1:exon:4111;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9317039 | 9317169 | 9317039 | ID=Msa0835930-mRNA-1:exon:4110;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9317253 | 9317299 | 9317253 | ID=Msa0835930-mRNA-1:exon:4109;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9317374 | 9317450 | 9317374 | ID=Msa0835930-mRNA-1:exon:4108;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9317518 | 9317582 | 9317518 | ID=Msa0835930-mRNA-1:exon:4107;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9317671 | 9317757 | 9317671 | ID=Msa0835930-mRNA-1:exon:4106;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9317871 | 9318047 | 9317871 | ID=Msa0835930-mRNA-1:exon:4105;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9319065 | 9319130 | 9319065 | ID=Msa0835930-mRNA-1:exon:4104;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9319682 | 9319738 | 9319682 | ID=Msa0835930-mRNA-1:exon:4103;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9319823 | 9319924 | 9319823 | ID=Msa0835930-mRNA-1:exon:4102;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9320683 | 9321080 | 9320683 | ID=Msa0835930-mRNA-1:exon:4101;Parent=Msa0835930-mRNA-1 |
| chr5_4 | exon | 9321940 | 9322245 | 9321940 | ID=Msa0835930-mRNA-1:exon:4100;Parent=Msa0835930-mRNA-1 |
| chr5_4 | five_prime_UTR | 9321940 | 9322245 | 9321940 | ID=Msa0835930-mRNA-1:five_prime_utr;Parent=Msa0835930-mRNA-1 |
| chr5_4 | five_prime_UTR | 9321058 | 9321080 | 9321058 | ID=Msa0835930-mRNA-1:five_prime_utr;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9320683 | 9321057 | 9320683 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9319823 | 9319924 | 9319823 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9319682 | 9319738 | 9319682 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9319065 | 9319130 | 9319065 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9317871 | 9318047 | 9317871 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9317671 | 9317757 | 9317671 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9317518 | 9317582 | 9317518 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9317374 | 9317450 | 9317374 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9317253 | 9317299 | 9317253 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9317039 | 9317169 | 9317039 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9316622 | 9316691 | 9316622 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | CDS | 9316001 | 9316510 | 9316001 | ID=Msa0835930-mRNA-1:cds;Parent=Msa0835930-mRNA-1 |
| chr5_4 | three_prime_UTR | 9315744 | 9316000 | 9315744 | ID=Msa0835930-mRNA-1:three_prime_utr;Parent=Msa0835930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
