Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005640 | XP_013465852.1 | 98.015 | 403 | 8 | 0 | 1 | 403 | 1 | 403 | 0.0 | 811 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005640 | sp|Q9SMZ3|FBX13_ARATH | 57.179 | 397 | 156 | 12 | 17 | 403 | 65 | 457 | 8.27e-145 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005640 | A0A072VEQ6 | 98.015 | 403 | 8 | 0 | 1 | 403 | 1 | 403 | 0.0 | 811 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005640 | Msa0053990 | 0.876187 | 1.704731e-68 | -8.615850e-47 |
| Msa0005640 | Msa0096560 | 0.973998 | 2.177215e-137 | -8.615850e-47 |
| Msa0005640 | Msa0148460 | 0.905926 | 2.559006e-80 | -8.615850e-47 |
| Msa0005640 | Msa1078590 | -0.810538 | 1.096938e-50 | -8.615850e-47 |
| Msa0005640 | Msa1078760 | -0.811999 | 5.285158e-51 | -8.615850e-47 |
| Msa0005640 | Msa1431190 | 0.922299 | 1.177270e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005640 | MtrunA17_Chr1g0150561 | 98.015 | 403 | 8 | 0 | 1 | 403 | 1 | 403 | 0.0 | 811 |
| Msa0005640 | MtrunA17_Chr3g0122401 | 25.258 | 388 | 241 | 13 | 21 | 401 | 118 | 463 | 3.08e-30 | 121 |
| Msa0005640 | MtrunA17_Chr8g0347881 | 25.304 | 411 | 236 | 18 | 17 | 402 | 39 | 403 | 2.05e-20 | 92.4 |
| Msa0005640 | MtrunA17_Chr1g0161891 | 22.192 | 365 | 221 | 11 | 20 | 378 | 19 | 326 | 4.09e-18 | 85.1 |
| Msa0005640 | MtrunA17_Chr8g0347851 | 25.441 | 397 | 238 | 19 | 22 | 402 | 44 | 398 | 3.55e-13 | 70.5 |
| Msa0005640 | MtrunA17_Chr1g0161871 | 26.201 | 229 | 137 | 8 | 20 | 230 | 30 | 244 | 2.16e-12 | 68.2 |
| Msa0005640 | MtrunA17_Chr7g0220421 | 22.506 | 391 | 243 | 12 | 22 | 403 | 98 | 437 | 2.61e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005640 | AT4G33160.1 | 57.179 | 397 | 156 | 12 | 17 | 403 | 65 | 457 | 8.41e-146 | 422 |
| Msa0005640 | AT4G33160.2 | 57.179 | 397 | 156 | 12 | 17 | 403 | 126 | 518 | 3.19e-145 | 423 |
| Msa0005640 | AT1G27340.1 | 24.528 | 371 | 228 | 12 | 20 | 382 | 118 | 444 | 1.23e-26 | 111 |
| Msa0005640 | AT3G61590.4 | 24.941 | 421 | 246 | 22 | 11 | 402 | 67 | 446 | 4.08e-12 | 67.8 |
| Msa0005640 | AT3G61590.1 | 24.941 | 421 | 246 | 22 | 11 | 402 | 31 | 410 | 5.35e-12 | 67.4 |
| Msa0005640 | AT3G61590.2 | 24.941 | 421 | 246 | 22 | 11 | 402 | 39 | 418 | 5.85e-12 | 67.4 |
| Msa0005640 | AT3G61590.3 | 24.941 | 421 | 246 | 22 | 11 | 402 | 39 | 418 | 5.85e-12 | 67.4 |
Find 78 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCAAAATGTTGCATTAA+TGG | 0.164880 | 1_1:+8305431 | Msa0005640:CDS |
| ATACAATCTTGTAGGATATT+TGG | 0.194528 | 1_1:-8304797 | None:intergenic |
| CAAACAGAAGCTTCTATTCT+TGG | 0.227716 | 1_1:-8305491 | None:intergenic |
| TCTTGGAAACCACAAGTCTT+AGG | 0.228546 | 1_1:+8305213 | Msa0005640:CDS |
| TCTCCATTAATGCAACATTT+TGG | 0.236954 | 1_1:-8305434 | None:intergenic |
| CACTTATGTTCTTTGTGATT+TGG | 0.296690 | 1_1:+8305388 | Msa0005640:CDS |
| ATTCCTGTTGCAGCTTCTAA+TGG | 0.302810 | 1_1:+8304630 | Msa0005640:CDS |
| ATTGTGTTGGTGCCGGTTCT+CGG | 0.340920 | 1_1:+8305333 | Msa0005640:CDS |
| GTGATTTGGTAACCAACAAC+TGG | 0.347069 | 1_1:+8305402 | Msa0005640:CDS |
| ATAGACTTTAAACGAAAGAT+TGG | 0.375910 | 1_1:-8304838 | None:intergenic |
| GAAGACTAATACAATCTTGT+AGG | 0.389829 | 1_1:-8304805 | None:intergenic |
| ATAACTCAAGCTCTTCTTGT+TGG | 0.420790 | 1_1:+8304859 | Msa0005640:CDS |
| TGTTGCAGCTTCTAATGGCC+TGG | 0.422631 | 1_1:+8304635 | Msa0005640:CDS |
| GAATAGAAGCTTCTGTTTGA+CGG | 0.426490 | 1_1:+8305495 | Msa0005640:CDS |
| TAACTCAAGCTCTTCTTGTT+GGG | 0.426988 | 1_1:+8304860 | Msa0005640:CDS |
| TACAAGATTGTATTAGTCTT+CGG | 0.428289 | 1_1:+8304807 | Msa0005640:CDS |
| GAAATTCAACGGAGGTAGTT+CGG | 0.429403 | 1_1:-8304718 | None:intergenic |
| AAACTATTGAATCCATTCTC+TGG | 0.430777 | 1_1:-8304330 | None:intergenic |
| CTTGGAAACCACAAGTCTTA+GGG | 0.431925 | 1_1:+8305214 | Msa0005640:CDS |
| TGAAGTTTCCTGACGAAGTT+CGG | 0.432189 | 1_1:-8304665 | None:intergenic |
| TGGGAAGACGAGAATGCTCT+TGG | 0.432787 | 1_1:+8304879 | Msa0005640:CDS |
| GTTTGCTACCGAACTTCGTC+AGG | 0.434074 | 1_1:+8304657 | Msa0005640:CDS |
| AGTGTTTCTTTGAGTACCCT+AGG | 0.452698 | 1_1:+8305111 | Msa0005640:CDS |
| AAAAGAAAGTCTCCAGAGAA+TGG | 0.455501 | 1_1:+8304318 | Msa0005640:CDS |
| ACATCCCCACAAGGGATCCT+TGG | 0.462778 | 1_1:+8304493 | Msa0005640:CDS |
| TGGCAATTCAACCCAGTTGT+TGG | 0.463420 | 1_1:-8305414 | None:intergenic |
| AGAAGATCCGGTCACAGGAT+TGG | 0.466882 | 1_1:-8304694 | None:intergenic |
| GAATCTTCGAGCAGAAGATT+CGG | 0.467832 | 1_1:-8304594 | None:intergenic |
| TAGACTTTAAACGAAAGATT+GGG | 0.470551 | 1_1:-8304837 | None:intergenic |
| TCGATGAGACCAACCGATGC+TGG | 0.476739 | 1_1:+8305246 | Msa0005640:CDS |
| TTACTTCCGTGTGCAAAAGA+TGG | 0.481747 | 1_1:+8304427 | Msa0005640:CDS |
| ATGACAGACTGGTTGAGATC+GGG | 0.482940 | 1_1:-8304531 | None:intergenic |
| GATATCAATTGTGTTGGTGC+CGG | 0.486697 | 1_1:+8305326 | Msa0005640:CDS |
| GTACTCAAAGAAACACTTGC+AGG | 0.487063 | 1_1:-8305105 | None:intergenic |
| TTGACTCGGCTGAAAACAGT+TGG | 0.492513 | 1_1:+8304556 | Msa0005640:CDS |
| GAATGAAGATGTCTTTGAAA+AGG | 0.497404 | 1_1:+8304368 | Msa0005640:CDS |
| GATGACAGACTGGTTGAGAT+CGG | 0.499005 | 1_1:-8304532 | None:intergenic |
| AGGCCATTAGAAGCTGCAAC+AGG | 0.501616 | 1_1:-8304633 | None:intergenic |
| GCACCAACACAATTGATATC+CGG | 0.505766 | 1_1:-8305323 | None:intergenic |
| AGGTAGTTCGGTAGAAGATC+CGG | 0.510241 | 1_1:-8304706 | None:intergenic |
| CGAGAATGCTCTTGGGAGGA+AGG | 0.510339 | 1_1:+8304887 | Msa0005640:CDS |
| ACCGACGAATATTGCTTGGT+TGG | 0.512080 | 1_1:-8305008 | None:intergenic |
| AATGACCGACGAATATTGCT+TGG | 0.513209 | 1_1:-8305012 | None:intergenic |
| GTGTACTTTCTGAGCAAGGC+TGG | 0.518608 | 1_1:+8304954 | Msa0005640:CDS |
| ATTGATATCGTCGAGTGTAA+CGG | 0.526717 | 1_1:+8305161 | Msa0005640:CDS |
| TCTTTGAAAAGGTACTTTCG+TGG | 0.527524 | 1_1:+8304379 | Msa0005640:CDS |
| ACGAAGTTCGGTAGCAAACC+AGG | 0.530457 | 1_1:-8304653 | None:intergenic |
| CAGCAGCAATGTCTCATGAA+TGG | 0.530978 | 1_1:+8305288 | Msa0005640:CDS |
| AGAACATAAGTGCATAGCTC+AGG | 0.532205 | 1_1:-8305377 | None:intergenic |
| GGGAAGACGAGAATGCTCTT+GGG | 0.541458 | 1_1:+8304880 | Msa0005640:CDS |
| CTGCAATCTGTTGCCAGCAT+CGG | 0.543898 | 1_1:-8305259 | None:intergenic |
| TTGCATTAATGGAGAAGTCA+TGG | 0.546480 | 1_1:+8305442 | Msa0005640:CDS |
| AATCTGTTGCCAGCATCGGT+TGG | 0.557369 | 1_1:-8305255 | None:intergenic |
| CCAGTCTGTCATCTTTGACT+CGG | 0.557680 | 1_1:+8304542 | Msa0005640:CDS |
| TCGGTAGAAGATCCGGTCAC+AGG | 0.558565 | 1_1:-8304699 | None:intergenic |
| ATTGTGTCCAATCCTGTGAC+CGG | 0.560669 | 1_1:+8304687 | Msa0005640:CDS |
| CATTCATGAGACATTGCTGC+TGG | 0.561199 | 1_1:-8305287 | None:intergenic |
| AAACCACAAGTCTTAGGGTG+TGG | 0.562665 | 1_1:+8305219 | Msa0005640:CDS |
| ATTGCAAGCTACAACGGTCC+CGG | 0.576687 | 1_1:-8305078 | None:intergenic |
| CTTGCTCACACATCCCCACA+AGG | 0.585521 | 1_1:+8304484 | Msa0005640:CDS |
| AGACGAAAGAAACTCGAAGT+AGG | 0.593990 | 1_1:-8304405 | None:intergenic |
| TGAATGGTACAGAAAGAAGC+CGG | 0.596645 | 1_1:+8305304 | Msa0005640:CDS |
| TCTGAGCAAGGCTGGAAATG+TGG | 0.601419 | 1_1:+8304962 | Msa0005640:CDS |
| AAGCCGGATATCAATTGTGT+TGG | 0.603699 | 1_1:+8305320 | Msa0005640:CDS |
| CCGAGTCAAAGATGACAGAC+TGG | 0.609122 | 1_1:-8304542 | None:intergenic |
| AGAAGTCATGGAGTTTATGT+CGG | 0.612236 | 1_1:+8305454 | Msa0005640:CDS |
| AAAGTACACAACATTGTCAT+CGG | 0.617043 | 1_1:-8304940 | None:intergenic |
| TCTCCACACCCTAAGACTTG+TGG | 0.621668 | 1_1:-8305222 | None:intergenic |
| TACTAACAAAGACGGTCAAG+AGG | 0.624609 | 1_1:+8305034 | Msa0005640:CDS |
| TGTTGTGTACTTTCTGAGCA+AGG | 0.626293 | 1_1:+8304950 | Msa0005640:CDS |
| TCCAACCAAGCAATATTCGT+CGG | 0.630854 | 1_1:+8305007 | Msa0005640:CDS |
| GGTCAAATTGCAAGCTACAA+CGG | 0.643110 | 1_1:-8305084 | None:intergenic |
| AAGACGAGAATGCTCTTGGG+AGG | 0.645387 | 1_1:+8304883 | Msa0005640:CDS |
| AAAACCAAGGATCCCTTGTG+GGG | 0.654526 | 1_1:-8304497 | None:intergenic |
| TGATTTGGTAACCAACAACT+GGG | 0.681708 | 1_1:+8305403 | Msa0005640:CDS |
| TCGGTCATTACTAACAAAGA+CGG | 0.685648 | 1_1:+8305026 | Msa0005640:CDS |
| TTGCTCACACATCCCCACAA+GGG | 0.708158 | 1_1:+8304485 | Msa0005640:CDS |
| TCTGAGGCGAAATTCAACGG+AGG | 0.746256 | 1_1:-8304726 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAGTACTACATCTTTTAA+TGG | + | chr1_1:8304774-8304793 | Msa0005640:CDS | 25.0% |
| ! | ATACAATCTTGTAGGATATT+TGG | - | chr1_1:8304800-8304819 | None:intergenic | 25.0% |
| !!! | TACAAGATTGTATTAGTCTT+CGG | + | chr1_1:8304807-8304826 | Msa0005640:CDS | 25.0% |
| ! | TAGACTTTAAACGAAAGATT+GGG | - | chr1_1:8304840-8304859 | None:intergenic | 25.0% |
| ! | ATAGACTTTAAACGAAAGAT+TGG | - | chr1_1:8304841-8304860 | None:intergenic | 25.0% |
| !!! | CGTTTTATTATCAGAATTCT+TGG | + | chr1_1:8305196-8305215 | Msa0005640:CDS | 25.0% |
| !! | ATGAGTACTACATCTTTTAA+TGG | + | chr1_1:8304774-8304793 | Msa0005640:CDS | 25.0% |
| ! | ATACAATCTTGTAGGATATT+TGG | - | chr1_1:8304800-8304819 | None:intergenic | 25.0% |
| !!! | TACAAGATTGTATTAGTCTT+CGG | + | chr1_1:8304807-8304826 | Msa0005640:CDS | 25.0% |
| ! | TAGACTTTAAACGAAAGATT+GGG | - | chr1_1:8304840-8304859 | None:intergenic | 25.0% |
| ! | ATAGACTTTAAACGAAAGAT+TGG | - | chr1_1:8304841-8304860 | None:intergenic | 25.0% |
| !!! | CGTTTTATTATCAGAATTCT+TGG | + | chr1_1:8305196-8305215 | Msa0005640:CDS | 25.0% |
| AAACTATTGAATCCATTCTC+TGG | - | chr1_1:8304333-8304352 | None:intergenic | 30.0% | |
| ! | TGGATTCAATAGTTTTTCAC+TGG | + | chr1_1:8304338-8304357 | Msa0005640:CDS | 30.0% |
| ! | GAATGAAGATGTCTTTGAAA+AGG | + | chr1_1:8304368-8304387 | Msa0005640:CDS | 30.0% |
| !! | ATTGAGAGATTGATTTTCTG+AGG | - | chr1_1:8304745-8304764 | None:intergenic | 30.0% |
| GAAGACTAATACAATCTTGT+AGG | - | chr1_1:8304808-8304827 | None:intergenic | 30.0% | |
| AAAGTACACAACATTGTCAT+CGG | - | chr1_1:8304943-8304962 | None:intergenic | 30.0% | |
| ! | ATAGAGTATTCGCAAAAAAC+TGG | - | chr1_1:8305143-8305162 | None:intergenic | 30.0% |
| CACTTATGTTCTTTGTGATT+TGG | + | chr1_1:8305388-8305407 | Msa0005640:CDS | 30.0% | |
| TTGCCAAAATGTTGCATTAA+TGG | + | chr1_1:8305431-8305450 | Msa0005640:CDS | 30.0% | |
| ! | TCTCCATTAATGCAACATTT+TGG | - | chr1_1:8305437-8305456 | None:intergenic | 30.0% |
| AAACTATTGAATCCATTCTC+TGG | - | chr1_1:8304333-8304352 | None:intergenic | 30.0% | |
| ! | TGGATTCAATAGTTTTTCAC+TGG | + | chr1_1:8304338-8304357 | Msa0005640:CDS | 30.0% |
| ! | GAATGAAGATGTCTTTGAAA+AGG | + | chr1_1:8304368-8304387 | Msa0005640:CDS | 30.0% |
| !! | ATTGAGAGATTGATTTTCTG+AGG | - | chr1_1:8304745-8304764 | None:intergenic | 30.0% |
| GAAGACTAATACAATCTTGT+AGG | - | chr1_1:8304808-8304827 | None:intergenic | 30.0% | |
| AAAGTACACAACATTGTCAT+CGG | - | chr1_1:8304943-8304962 | None:intergenic | 30.0% | |
| ! | ATAGAGTATTCGCAAAAAAC+TGG | - | chr1_1:8305143-8305162 | None:intergenic | 30.0% |
| CACTTATGTTCTTTGTGATT+TGG | + | chr1_1:8305388-8305407 | Msa0005640:CDS | 30.0% | |
| TTGCCAAAATGTTGCATTAA+TGG | + | chr1_1:8305431-8305450 | Msa0005640:CDS | 30.0% | |
| ! | TCTCCATTAATGCAACATTT+TGG | - | chr1_1:8305437-8305456 | None:intergenic | 30.0% |
| AAAAGAAAGTCTCCAGAGAA+TGG | + | chr1_1:8304318-8304337 | Msa0005640:CDS | 35.0% | |
| !! | TCTTTGAAAAGGTACTTTCG+TGG | + | chr1_1:8304379-8304398 | Msa0005640:CDS | 35.0% |
| ! | TGATTTCCATCTTTTGCACA+CGG | - | chr1_1:8304436-8304455 | None:intergenic | 35.0% |
| ! | AACAGGAATGCAACTTTTGT+TGG | - | chr1_1:8304619-8304638 | None:intergenic | 35.0% |
| !!! | TTTTCTGAGGCGAAATTCAA+CGG | - | chr1_1:8304732-8304751 | None:intergenic | 35.0% |
| ATAACTCAAGCTCTTCTTGT+TGG | + | chr1_1:8304859-8304878 | Msa0005640:CDS | 35.0% | |
| TAACTCAAGCTCTTCTTGTT+GGG | + | chr1_1:8304860-8304879 | Msa0005640:CDS | 35.0% | |
| TCGGTCATTACTAACAAAGA+CGG | + | chr1_1:8305026-8305045 | Msa0005640:CDS | 35.0% | |
| !!! | GTCTATTTTTTGAGTTCGTC+CGG | + | chr1_1:8305059-8305078 | Msa0005640:CDS | 35.0% |
| !!! | TCTATTTTTTGAGTTCGTCC+GGG | + | chr1_1:8305060-8305079 | Msa0005640:CDS | 35.0% |
| AAAAAACTGGCAACAACCTA+GGG | - | chr1_1:8305130-8305149 | None:intergenic | 35.0% | |
| ATTGATATCGTCGAGTGTAA+CGG | + | chr1_1:8305161-8305180 | Msa0005640:CDS | 35.0% | |
| GCATATAAAAATCCGAGAAC+CGG | - | chr1_1:8305348-8305367 | None:intergenic | 35.0% | |
| !! | TGATTTGGTAACCAACAACT+GGG | + | chr1_1:8305403-8305422 | Msa0005640:CDS | 35.0% |
| TTGCATTAATGGAGAAGTCA+TGG | + | chr1_1:8305442-8305461 | Msa0005640:CDS | 35.0% | |
| AGAAGTCATGGAGTTTATGT+CGG | + | chr1_1:8305454-8305473 | Msa0005640:CDS | 35.0% | |
| CAAACAGAAGCTTCTATTCT+TGG | - | chr1_1:8305494-8305513 | None:intergenic | 35.0% | |
| AAAAGAAAGTCTCCAGAGAA+TGG | + | chr1_1:8304318-8304337 | Msa0005640:CDS | 35.0% | |
| !! | TCTTTGAAAAGGTACTTTCG+TGG | + | chr1_1:8304379-8304398 | Msa0005640:CDS | 35.0% |
| ! | TGATTTCCATCTTTTGCACA+CGG | - | chr1_1:8304436-8304455 | None:intergenic | 35.0% |
| ! | AACAGGAATGCAACTTTTGT+TGG | - | chr1_1:8304619-8304638 | None:intergenic | 35.0% |
| !!! | TTTTCTGAGGCGAAATTCAA+CGG | - | chr1_1:8304732-8304751 | None:intergenic | 35.0% |
| ATAACTCAAGCTCTTCTTGT+TGG | + | chr1_1:8304859-8304878 | Msa0005640:CDS | 35.0% | |
| TAACTCAAGCTCTTCTTGTT+GGG | + | chr1_1:8304860-8304879 | Msa0005640:CDS | 35.0% | |
| TCGGTCATTACTAACAAAGA+CGG | + | chr1_1:8305026-8305045 | Msa0005640:CDS | 35.0% | |
| !!! | GTCTATTTTTTGAGTTCGTC+CGG | + | chr1_1:8305059-8305078 | Msa0005640:CDS | 35.0% |
| !!! | TCTATTTTTTGAGTTCGTCC+GGG | + | chr1_1:8305060-8305079 | Msa0005640:CDS | 35.0% |
| AAAAAACTGGCAACAACCTA+GGG | - | chr1_1:8305130-8305149 | None:intergenic | 35.0% | |
| ATTGATATCGTCGAGTGTAA+CGG | + | chr1_1:8305161-8305180 | Msa0005640:CDS | 35.0% | |
| GCATATAAAAATCCGAGAAC+CGG | - | chr1_1:8305348-8305367 | None:intergenic | 35.0% | |
| !! | TGATTTGGTAACCAACAACT+GGG | + | chr1_1:8305403-8305422 | Msa0005640:CDS | 35.0% |
| TTGCATTAATGGAGAAGTCA+TGG | + | chr1_1:8305442-8305461 | Msa0005640:CDS | 35.0% | |
| AGAAGTCATGGAGTTTATGT+CGG | + | chr1_1:8305454-8305473 | Msa0005640:CDS | 35.0% | |
| CAAACAGAAGCTTCTATTCT+TGG | - | chr1_1:8305494-8305513 | None:intergenic | 35.0% | |
| AGACGAAAGAAACTCGAAGT+AGG | - | chr1_1:8304408-8304427 | None:intergenic | 40.0% | |
| TTACTTCCGTGTGCAAAAGA+TGG | + | chr1_1:8304427-8304446 | Msa0005640:CDS | 40.0% | |
| AAAAACCAAGGATCCCTTGT+GGG | - | chr1_1:8304501-8304520 | None:intergenic | 40.0% | |
| !! | AAGGGATCCTTGGTTTTTCA+TGG | + | chr1_1:8304503-8304522 | Msa0005640:CDS | 40.0% |
| GAATCTTCGAGCAGAAGATT+CGG | - | chr1_1:8304597-8304616 | None:intergenic | 40.0% | |
| ATTCCTGTTGCAGCTTCTAA+TGG | + | chr1_1:8304630-8304649 | Msa0005640:CDS | 40.0% | |
| TGAAGTTTCCTGACGAAGTT+CGG | - | chr1_1:8304668-8304687 | None:intergenic | 40.0% | |
| GAAATTCAACGGAGGTAGTT+CGG | - | chr1_1:8304721-8304740 | None:intergenic | 40.0% | |
| TGTTGTGTACTTTCTGAGCA+AGG | + | chr1_1:8304950-8304969 | Msa0005640:CDS | 40.0% | |
| TCCAACCAAGCAATATTCGT+CGG | + | chr1_1:8305007-8305026 | Msa0005640:CDS | 40.0% | |
| AATGACCGACGAATATTGCT+TGG | - | chr1_1:8305015-8305034 | None:intergenic | 40.0% | |
| TACTAACAAAGACGGTCAAG+AGG | + | chr1_1:8305034-8305053 | Msa0005640:CDS | 40.0% | |
| GGTCAAATTGCAAGCTACAA+CGG | - | chr1_1:8305087-8305106 | None:intergenic | 40.0% | |
| GTACTCAAAGAAACACTTGC+AGG | - | chr1_1:8305108-8305127 | None:intergenic | 40.0% | |
| AGTGTTTCTTTGAGTACCCT+AGG | + | chr1_1:8305111-8305130 | Msa0005640:CDS | 40.0% | |
| CAAAAAACTGGCAACAACCT+AGG | - | chr1_1:8305131-8305150 | None:intergenic | 40.0% | |
| TCTTGGAAACCACAAGTCTT+AGG | + | chr1_1:8305213-8305232 | Msa0005640:CDS | 40.0% | |
| CTTGGAAACCACAAGTCTTA+GGG | + | chr1_1:8305214-8305233 | Msa0005640:CDS | 40.0% | |
| TGAATGGTACAGAAAGAAGC+CGG | + | chr1_1:8305304-8305323 | Msa0005640:CDS | 40.0% | |
| AAGCCGGATATCAATTGTGT+TGG | + | chr1_1:8305320-8305339 | Msa0005640:CDS | 40.0% | |
| GCACCAACACAATTGATATC+CGG | - | chr1_1:8305326-8305345 | None:intergenic | 40.0% | |
| ! | GATATCAATTGTGTTGGTGC+CGG | + | chr1_1:8305326-8305345 | Msa0005640:CDS | 40.0% |
| AGAACATAAGTGCATAGCTC+AGG | - | chr1_1:8305380-8305399 | None:intergenic | 40.0% | |
| !! | GTGATTTGGTAACCAACAAC+TGG | + | chr1_1:8305402-8305421 | Msa0005640:CDS | 40.0% |
| AGACGAAAGAAACTCGAAGT+AGG | - | chr1_1:8304408-8304427 | None:intergenic | 40.0% | |
| TTACTTCCGTGTGCAAAAGA+TGG | + | chr1_1:8304427-8304446 | Msa0005640:CDS | 40.0% | |
| AAAAACCAAGGATCCCTTGT+GGG | - | chr1_1:8304501-8304520 | None:intergenic | 40.0% | |
| !! | AAGGGATCCTTGGTTTTTCA+TGG | + | chr1_1:8304503-8304522 | Msa0005640:CDS | 40.0% |
| GAATCTTCGAGCAGAAGATT+CGG | - | chr1_1:8304597-8304616 | None:intergenic | 40.0% | |
| ATTCCTGTTGCAGCTTCTAA+TGG | + | chr1_1:8304630-8304649 | Msa0005640:CDS | 40.0% | |
| TGAAGTTTCCTGACGAAGTT+CGG | - | chr1_1:8304668-8304687 | None:intergenic | 40.0% | |
| GAAATTCAACGGAGGTAGTT+CGG | - | chr1_1:8304721-8304740 | None:intergenic | 40.0% | |
| TGTTGTGTACTTTCTGAGCA+AGG | + | chr1_1:8304950-8304969 | Msa0005640:CDS | 40.0% | |
| TCCAACCAAGCAATATTCGT+CGG | + | chr1_1:8305007-8305026 | Msa0005640:CDS | 40.0% | |
| AATGACCGACGAATATTGCT+TGG | - | chr1_1:8305015-8305034 | None:intergenic | 40.0% | |
| TACTAACAAAGACGGTCAAG+AGG | + | chr1_1:8305034-8305053 | Msa0005640:CDS | 40.0% | |
| GGTCAAATTGCAAGCTACAA+CGG | - | chr1_1:8305087-8305106 | None:intergenic | 40.0% | |
| GTACTCAAAGAAACACTTGC+AGG | - | chr1_1:8305108-8305127 | None:intergenic | 40.0% | |
| AGTGTTTCTTTGAGTACCCT+AGG | + | chr1_1:8305111-8305130 | Msa0005640:CDS | 40.0% | |
| CAAAAAACTGGCAACAACCT+AGG | - | chr1_1:8305131-8305150 | None:intergenic | 40.0% | |
| TCTTGGAAACCACAAGTCTT+AGG | + | chr1_1:8305213-8305232 | Msa0005640:CDS | 40.0% | |
| CTTGGAAACCACAAGTCTTA+GGG | + | chr1_1:8305214-8305233 | Msa0005640:CDS | 40.0% | |
| TGAATGGTACAGAAAGAAGC+CGG | + | chr1_1:8305304-8305323 | Msa0005640:CDS | 40.0% | |
| AAGCCGGATATCAATTGTGT+TGG | + | chr1_1:8305320-8305339 | Msa0005640:CDS | 40.0% | |
| GCACCAACACAATTGATATC+CGG | - | chr1_1:8305326-8305345 | None:intergenic | 40.0% | |
| ! | GATATCAATTGTGTTGGTGC+CGG | + | chr1_1:8305326-8305345 | Msa0005640:CDS | 40.0% |
| AGAACATAAGTGCATAGCTC+AGG | - | chr1_1:8305380-8305399 | None:intergenic | 40.0% | |
| !! | GTGATTTGGTAACCAACAAC+TGG | + | chr1_1:8305402-8305421 | Msa0005640:CDS | 40.0% |
| AAAACCAAGGATCCCTTGTG+GGG | - | chr1_1:8304500-8304519 | None:intergenic | 45.0% | |
| GAAAAACCAAGGATCCCTTG+TGG | - | chr1_1:8304502-8304521 | None:intergenic | 45.0% | |
| GGAGCAACCATGAAAAACCA+AGG | - | chr1_1:8304513-8304532 | None:intergenic | 45.0% | |
| ! | ATGACAGACTGGTTGAGATC+GGG | - | chr1_1:8304534-8304553 | None:intergenic | 45.0% |
| ! | GATGACAGACTGGTTGAGAT+CGG | - | chr1_1:8304535-8304554 | None:intergenic | 45.0% |
| CCAGTCTGTCATCTTTGACT+CGG | + | chr1_1:8304542-8304561 | Msa0005640:CDS | 45.0% | |
| !! | TTGACTCGGCTGAAAACAGT+TGG | + | chr1_1:8304556-8304575 | Msa0005640:CDS | 45.0% |
| ATTGTGTCCAATCCTGTGAC+CGG | + | chr1_1:8304687-8304706 | Msa0005640:CDS | 45.0% | |
| AGGTAGTTCGGTAGAAGATC+CGG | - | chr1_1:8304709-8304728 | None:intergenic | 45.0% | |
| ACCGACGAATATTGCTTGGT+TGG | - | chr1_1:8305011-8305030 | None:intergenic | 45.0% | |
| AAACCACAAGTCTTAGGGTG+TGG | + | chr1_1:8305219-8305238 | Msa0005640:CDS | 45.0% | |
| CATTCATGAGACATTGCTGC+TGG | - | chr1_1:8305290-8305309 | None:intergenic | 45.0% | |
| CAGCAGCAATGTCTCATGAA+TGG | + | chr1_1:8305288-8305307 | Msa0005640:CDS | 45.0% | |
| TGGCAATTCAACCCAGTTGT+TGG | - | chr1_1:8305417-8305436 | None:intergenic | 45.0% | |
| AAAACCAAGGATCCCTTGTG+GGG | - | chr1_1:8304500-8304519 | None:intergenic | 45.0% | |
| GAAAAACCAAGGATCCCTTG+TGG | - | chr1_1:8304502-8304521 | None:intergenic | 45.0% | |
| GGAGCAACCATGAAAAACCA+AGG | - | chr1_1:8304513-8304532 | None:intergenic | 45.0% | |
| ! | ATGACAGACTGGTTGAGATC+GGG | - | chr1_1:8304534-8304553 | None:intergenic | 45.0% |
| ! | GATGACAGACTGGTTGAGAT+CGG | - | chr1_1:8304535-8304554 | None:intergenic | 45.0% |
| CCAGTCTGTCATCTTTGACT+CGG | + | chr1_1:8304542-8304561 | Msa0005640:CDS | 45.0% | |
| !! | TTGACTCGGCTGAAAACAGT+TGG | + | chr1_1:8304556-8304575 | Msa0005640:CDS | 45.0% |
| ATTGTGTCCAATCCTGTGAC+CGG | + | chr1_1:8304687-8304706 | Msa0005640:CDS | 45.0% | |
| AGGTAGTTCGGTAGAAGATC+CGG | - | chr1_1:8304709-8304728 | None:intergenic | 45.0% | |
| ACCGACGAATATTGCTTGGT+TGG | - | chr1_1:8305011-8305030 | None:intergenic | 45.0% | |
| AAACCACAAGTCTTAGGGTG+TGG | + | chr1_1:8305219-8305238 | Msa0005640:CDS | 45.0% | |
| CATTCATGAGACATTGCTGC+TGG | - | chr1_1:8305290-8305309 | None:intergenic | 45.0% | |
| CAGCAGCAATGTCTCATGAA+TGG | + | chr1_1:8305288-8305307 | Msa0005640:CDS | 45.0% | |
| TGGCAATTCAACCCAGTTGT+TGG | - | chr1_1:8305417-8305436 | None:intergenic | 45.0% | |
| TTGCTCACACATCCCCACAA+GGG | + | chr1_1:8304485-8304504 | Msa0005640:CDS | 50.0% | |
| CCGAGTCAAAGATGACAGAC+TGG | - | chr1_1:8304545-8304564 | None:intergenic | 50.0% | |
| AGGCCATTAGAAGCTGCAAC+AGG | - | chr1_1:8304636-8304655 | None:intergenic | 50.0% | |
| TGTTGCAGCTTCTAATGGCC+TGG | + | chr1_1:8304635-8304654 | Msa0005640:CDS | 50.0% | |
| ACGAAGTTCGGTAGCAAACC+AGG | - | chr1_1:8304656-8304675 | None:intergenic | 50.0% | |
| ! | GTTTGCTACCGAACTTCGTC+AGG | + | chr1_1:8304657-8304676 | Msa0005640:CDS | 50.0% |
| AGAAGATCCGGTCACAGGAT+TGG | - | chr1_1:8304697-8304716 | None:intergenic | 50.0% | |
| ! | TCTGAGGCGAAATTCAACGG+AGG | - | chr1_1:8304729-8304748 | None:intergenic | 50.0% |
| TGGGAAGACGAGAATGCTCT+TGG | + | chr1_1:8304879-8304898 | Msa0005640:CDS | 50.0% | |
| GGGAAGACGAGAATGCTCTT+GGG | + | chr1_1:8304880-8304899 | Msa0005640:CDS | 50.0% | |
| AAGACGAGAATGCTCTTGGG+AGG | + | chr1_1:8304883-8304902 | Msa0005640:CDS | 50.0% | |
| GTGTACTTTCTGAGCAAGGC+TGG | + | chr1_1:8304954-8304973 | Msa0005640:CDS | 50.0% | |
| TCTGAGCAAGGCTGGAAATG+TGG | + | chr1_1:8304962-8304981 | Msa0005640:CDS | 50.0% | |
| ATTGCAAGCTACAACGGTCC+CGG | - | chr1_1:8305081-8305100 | None:intergenic | 50.0% | |
| TCTCCACACCCTAAGACTTG+TGG | - | chr1_1:8305225-8305244 | None:intergenic | 50.0% | |
| !! | AATCTGTTGCCAGCATCGGT+TGG | - | chr1_1:8305258-8305277 | None:intergenic | 50.0% |
| CTGCAATCTGTTGCCAGCAT+CGG | - | chr1_1:8305262-8305281 | None:intergenic | 50.0% | |
| !! | ATTGTGTTGGTGCCGGTTCT+CGG | + | chr1_1:8305333-8305352 | Msa0005640:CDS | 50.0% |
| TTGCTCACACATCCCCACAA+GGG | + | chr1_1:8304485-8304504 | Msa0005640:CDS | 50.0% | |
| CCGAGTCAAAGATGACAGAC+TGG | - | chr1_1:8304545-8304564 | None:intergenic | 50.0% | |
| AGGCCATTAGAAGCTGCAAC+AGG | - | chr1_1:8304636-8304655 | None:intergenic | 50.0% | |
| TGTTGCAGCTTCTAATGGCC+TGG | + | chr1_1:8304635-8304654 | Msa0005640:CDS | 50.0% | |
| ACGAAGTTCGGTAGCAAACC+AGG | - | chr1_1:8304656-8304675 | None:intergenic | 50.0% | |
| ! | GTTTGCTACCGAACTTCGTC+AGG | + | chr1_1:8304657-8304676 | Msa0005640:CDS | 50.0% |
| AGAAGATCCGGTCACAGGAT+TGG | - | chr1_1:8304697-8304716 | None:intergenic | 50.0% | |
| ! | TCTGAGGCGAAATTCAACGG+AGG | - | chr1_1:8304729-8304748 | None:intergenic | 50.0% |
| TGGGAAGACGAGAATGCTCT+TGG | + | chr1_1:8304879-8304898 | Msa0005640:CDS | 50.0% | |
| GGGAAGACGAGAATGCTCTT+GGG | + | chr1_1:8304880-8304899 | Msa0005640:CDS | 50.0% | |
| AAGACGAGAATGCTCTTGGG+AGG | + | chr1_1:8304883-8304902 | Msa0005640:CDS | 50.0% | |
| GTGTACTTTCTGAGCAAGGC+TGG | + | chr1_1:8304954-8304973 | Msa0005640:CDS | 50.0% | |
| TCTGAGCAAGGCTGGAAATG+TGG | + | chr1_1:8304962-8304981 | Msa0005640:CDS | 50.0% | |
| ATTGCAAGCTACAACGGTCC+CGG | - | chr1_1:8305081-8305100 | None:intergenic | 50.0% | |
| TCTCCACACCCTAAGACTTG+TGG | - | chr1_1:8305225-8305244 | None:intergenic | 50.0% | |
| !! | AATCTGTTGCCAGCATCGGT+TGG | - | chr1_1:8305258-8305277 | None:intergenic | 50.0% |
| CTGCAATCTGTTGCCAGCAT+CGG | - | chr1_1:8305262-8305281 | None:intergenic | 50.0% | |
| !! | ATTGTGTTGGTGCCGGTTCT+CGG | + | chr1_1:8305333-8305352 | Msa0005640:CDS | 50.0% |
| CTTGCTCACACATCCCCACA+AGG | + | chr1_1:8304484-8304503 | Msa0005640:CDS | 55.0% | |
| ACATCCCCACAAGGGATCCT+TGG | + | chr1_1:8304493-8304512 | Msa0005640:CDS | 55.0% | |
| TCGGTAGAAGATCCGGTCAC+AGG | - | chr1_1:8304702-8304721 | None:intergenic | 55.0% | |
| CGAGAATGCTCTTGGGAGGA+AGG | + | chr1_1:8304887-8304906 | Msa0005640:CDS | 55.0% | |
| TCGATGAGACCAACCGATGC+TGG | + | chr1_1:8305246-8305265 | Msa0005640:CDS | 55.0% | |
| CTTGCTCACACATCCCCACA+AGG | + | chr1_1:8304484-8304503 | Msa0005640:CDS | 55.0% | |
| ACATCCCCACAAGGGATCCT+TGG | + | chr1_1:8304493-8304512 | Msa0005640:CDS | 55.0% | |
| TCGGTAGAAGATCCGGTCAC+AGG | - | chr1_1:8304702-8304721 | None:intergenic | 55.0% | |
| CGAGAATGCTCTTGGGAGGA+AGG | + | chr1_1:8304887-8304906 | Msa0005640:CDS | 55.0% | |
| TCGATGAGACCAACCGATGC+TGG | + | chr1_1:8305246-8305265 | Msa0005640:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8304303 | 8305514 | 8304303 | ID=Msa0005640;Name=Msa0005640 |
| chr1_1 | mRNA | 8304303 | 8305514 | 8304303 | ID=Msa0005640-mRNA-1;Parent=Msa0005640;Name=Msa0005640-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|403 |
| chr1_1 | exon | 8304303 | 8305514 | 8304303 | ID=Msa0005640-mRNA-1:exon:2949;Parent=Msa0005640-mRNA-1 |
| chr1_1 | CDS | 8304303 | 8305514 | 8304303 | ID=Msa0005640-mRNA-1:cds;Parent=Msa0005640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
