AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078760 MtrunA17_Chr7g0263551 79.402 301 8 3 1 297 1 251 6.08e-166 460
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078760 AT2G37240.1 56.989 279 52 5 31 297 26 248 7.37e-97 286

Find 78 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGATATCTTCAATTTC+TGG 0.106966 7_2:-77763093 None:intergenic
GCTGAGCAAACAAAATTTAA+AGG 0.173089 7_2:+77762196 Msa1078760:CDS
GAGGCCTTACAATTTGTTTC+TGG 0.198475 7_2:+77762344 Msa1078760:CDS
TCTTTCCACAAGTCAGAAAT+TGG 0.241459 7_2:-77761335 None:intergenic
CGTTGCTTTAAAGTCTTCTT+AGG 0.250203 7_2:+77761838 Msa1078760:CDS
AGCAGAAAACATTACCTTCT+TGG 0.265603 7_2:-77761675 None:intergenic
GTCTTCTTAGGAGACGATTT+TGG 0.288587 7_2:+77761850 Msa1078760:CDS
AGTGGATTATTAGAATATAT+TGG 0.314832 7_2:-77760678 None:intergenic
GCTCTACCAACAGGATATAA+TGG 0.342546 7_2:+77762035 Msa1078760:intron
TACCTCAAGTTCACTGGAAT+TGG 0.348966 7_2:+77761280 Msa1078760:CDS
CCATGGAAGAACGTGGTCTT+AGG 0.353672 7_2:-77760554 None:intergenic
TTTCTGACTTGTGGAAAGAT+AGG 0.355719 7_2:+77761339 Msa1078760:CDS
TTAAGATATCTTCAATTTCT+GGG 0.369252 7_2:-77763092 None:intergenic
GTGTTTGATTTGGAAGGAAA+TGG 0.371027 7_2:+77761308 Msa1078760:CDS
TGTTTGCTCAGCAAAGGCTT+TGG 0.376817 7_2:-77762185 None:intergenic
CCCTTTGCTTCTCCTTCTGC+AGG 0.378932 7_2:+77760735 Msa1078760:CDS
TTGCATTTGCTCGTCACTTT+GGG 0.383103 7_2:+77761372 Msa1078760:CDS
ATTTATTTGTAAGTTGGTTA+AGG 0.384818 7_2:-77760611 None:intergenic
TAAGATAATAGAATTGTATA+TGG 0.387939 7_2:+77762537 Msa1078760:CDS
AGGAGTTGAGTCTCCAGTGC+TGG 0.394517 7_2:+77761250 Msa1078760:intron
ATTGGTGAAAGTGTTTGATT+TGG 0.396812 7_2:+77761298 Msa1078760:CDS
CATACACACCTTGTGAATAT+AGG 0.399241 7_2:-77762945 None:intergenic
CAAGGAGGAATTATAGTTGC+AGG 0.415807 7_2:+77762902 Msa1078760:CDS
TGTTTGATTTGGAAGGAAAT+GGG 0.420452 7_2:+77761309 Msa1078760:CDS
GCCTCATATGACGATTGAAC+GGG 0.426222 7_2:-77762326 None:intergenic
GGTGTAGCACTTGTATTGAT+TGG 0.434510 7_2:+77762066 Msa1078760:CDS
GCTTACATTTATTTGTAAGT+TGG 0.444299 7_2:-77760617 None:intergenic
GGATTCCAATTTCTGACTTG+TGG 0.450614 7_2:+77761330 Msa1078760:CDS
TTGGAAGCTTTCATTCGAAA+AGG 0.452486 7_2:+77762576 Msa1078760:CDS
TGGAAGGTTATCGACAAGAT+TGG 0.474176 7_2:+77762557 Msa1078760:CDS
AACTCCAGAAACAAATTGTA+AGG 0.478715 7_2:-77762348 None:intergenic
TGTGATATGAGCTTGTCATT+TGG 0.486792 7_2:-77763254 None:intergenic
AGGAGAAGCAAAGGGTATAG+TGG 0.493170 7_2:-77760727 None:intergenic
GTTGCATTTGCTCGTCACTT+TGG 0.495048 7_2:+77761371 Msa1078760:CDS
CCTAAGACCACGTTCTTCCA+TGG 0.496654 7_2:+77760554 Msa1078760:exon
CAATCTGCAGTAAATTGTGT+TGG 0.497828 7_2:+77763331 Msa1078760:three_prime_UTR
AAAACAGCAATCTTAATATG+AGG 0.500548 7_2:-77761796 None:intergenic
AGCAAAGGGTATAGTGGTGG+TGG 0.503365 7_2:-77760721 None:intergenic
CCCCGTTCAATCGTCATATG+AGG 0.503849 7_2:+77762325 Msa1078760:CDS
CTTGTCATTTGGCAAATGGC+TGG 0.508063 7_2:-77763243 None:intergenic
CACCAATTCCAGTGAACTTG+AGG 0.509684 7_2:-77761282 None:intergenic
GGAATTATAGTTGCAGGTCC+TGG 0.514996 7_2:+77762908 Msa1078760:CDS
TGAGCTTGTCATTTGGCAAA+TGG 0.516874 7_2:-77763247 None:intergenic
TGAGGATACCTCAAGTTCAC+TGG 0.525231 7_2:+77761274 Msa1078760:CDS
GGCTGTTTCTCTTACTTTGG+GGG 0.526708 7_2:-77762384 None:intergenic
GTGAAAGTGTTTGATTTGGA+AGG 0.528775 7_2:+77761302 Msa1078760:CDS
TGGACCTGGCAACATTGATC+AGG 0.530445 7_2:+77762086 Msa1078760:CDS
ATAGTTGCAGGTCCTGGTAA+AGG 0.534747 7_2:+77762914 Msa1078760:CDS
CAGGATATAATGGATGCGTC+TGG 0.535386 7_2:+77762045 Msa1078760:intron
GAGGTATCCTCACCCAGCAC+TGG 0.539297 7_2:-77761263 None:intergenic
GCCTGCAGAAGGAGAAGCAA+AGG 0.542339 7_2:-77760736 None:intergenic
CATGAGTAGGACAAAGAAGC+AGG 0.545391 7_2:+77763063 Msa1078760:intron
GGAGTTGAGTCTCCAGTGCT+GGG 0.551780 7_2:+77761251 Msa1078760:intron
GATTATTAGAATATATTGGA+AGG 0.557430 7_2:-77760674 None:intergenic
TGTACCTGATCAATGTTGCC+AGG 0.557725 7_2:-77762090 None:intergenic
ATAATAGAATTGTATATGGA+AGG 0.563362 7_2:+77762541 Msa1078760:CDS
AGACAAAACTTGCCTGCAGA+AGG 0.565291 7_2:-77760747 None:intergenic
TGAGTCTCCAGTGCTGGGTG+AGG 0.575533 7_2:+77761256 Msa1078760:CDS
AAAGGGTATAGTGGTGGTGG+TGG 0.582654 7_2:-77760718 None:intergenic
AAGGATACTGTTAGCAGAGG+AGG 0.583125 7_2:+77762595 Msa1078760:CDS
CCTGCAGAAGGAGAAGCAAA+GGG 0.584870 7_2:-77760735 None:intergenic
TAGGAGATGTTACCTTTACC+AGG 0.585319 7_2:-77762926 None:intergenic
GCTCGTGAAGAAAGAAGAGA+TGG 0.588367 7_2:+77763124 Msa1078760:exon
TGATTATCTTGCATCCAAGA+AGG 0.588890 7_2:+77761661 Msa1078760:CDS
GATACATGATGCAGTTTGAG+TGG 0.593247 7_2:-77760696 None:intergenic
GGCCTCATATGACGATTGAA+CGG 0.593309 7_2:-77762327 None:intergenic
AGAAGCAAAGGGTATAGTGG+TGG 0.594832 7_2:-77760724 None:intergenic
TGACACTGTGGCAGGCAACA+AGG 0.606308 7_2:+77762884 Msa1078760:intron
ATACTGTTAGCAGAGGAGGC+TGG 0.626834 7_2:+77762599 Msa1078760:CDS
AAGCGTTGTAGAGCACGCCA+TGG 0.635852 7_2:-77760571 None:intergenic
GCACTTGTATTGATTGGACC+TGG 0.646245 7_2:+77762072 Msa1078760:CDS
GAGCAAACAAAATTTAAAGG+AGG 0.650865 7_2:+77762199 Msa1078760:CDS
GAAAAGGATACTGTTAGCAG+AGG 0.658204 7_2:+77762592 Msa1078760:CDS
TGTACATGCTCTACGATGAG+AGG 0.660110 7_2:-77763149 None:intergenic
CCTCATATGACGATTGAACG+GGG 0.682252 7_2:-77762325 None:intergenic
TAACATCTCCTATATTCACA+AGG 0.715027 7_2:+77762937 Msa1078760:CDS
CACTGTGGCAGGCAACAAGG+AGG 0.721602 7_2:+77762887 Msa1078760:intron
GAGCACGCCATGGAAGAACG+TGG 0.728516 7_2:-77760561 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTTCTTAAATTATAAT+CGG - chr7_2:77760974-77760993 None:intergenic 10.0%
!! TTACTTATGAATAAAAAATT+AGG - chr7_2:77762408-77762427 None:intergenic 10.0%
!! TATCAATAATATTAGTTAGA+TGG + chr7_2:77761053-77761072 Msa1078760:intron 15.0%
!! ATCAATAATATTAGTTAGAT+GGG + chr7_2:77761054-77761073 Msa1078760:intron 15.0%
!! AAACAAATATTAAACGAAAA+GGG - chr7_2:77761966-77761985 None:intergenic 15.0%
!! AAAACAAATATTAAACGAAA+AGG - chr7_2:77761967-77761986 None:intergenic 15.0%
!!! AGTTTTTGTTAAATATACAA+AGG + chr7_2:77762474-77762493 Msa1078760:intron 15.0%
!! TAAGATAATAGAATTGTATA+TGG + chr7_2:77762537-77762556 Msa1078760:CDS 15.0%
!! ATTCTATAAAATTGAGTATA+GGG - chr7_2:77762976-77762995 None:intergenic 15.0%
!! TATTCTATAAAATTGAGTAT+AGG - chr7_2:77762977-77762996 None:intergenic 15.0%
!!! CAATTTTATAGAATATATCT+TGG + chr7_2:77762982-77763001 Msa1078760:intron 15.0%
!!! ATTTATTTGTAAGTTGGTTA+AGG - chr7_2:77760614-77760633 None:intergenic 20.0%
!! GATTATTAGAATATATTGGA+AGG - chr7_2:77760677-77760696 None:intergenic 20.0%
!!! AGTGGATTATTAGAATATAT+TGG - chr7_2:77760681-77760700 None:intergenic 20.0%
!! AATACAAGTGATTAAATATG+TGG + chr7_2:77760989-77761008 Msa1078760:intron 20.0%
!!! AAAGAAAAAGAAAGTATGAT+AGG - chr7_2:77761114-77761133 None:intergenic 20.0%
!! TTCATTATTATACAGAAATG+AGG - chr7_2:77761162-77761181 None:intergenic 20.0%
!!! CTAGAATCAAATGATTTTTT+TGG - chr7_2:77761766-77761785 None:intergenic 20.0%
!! CTAATACCTATATTTAATAC+AGG + chr7_2:77762162-77762181 Msa1078760:intron 20.0%
!! AGTAATAAATAAAATCCATG+CGG + chr7_2:77762423-77762442 Msa1078760:intron 20.0%
!! ATAATAGAATTGTATATGGA+AGG + chr7_2:77762541-77762560 Msa1078760:CDS 20.0%
!! TACATTGAATCTATAATTAG+AGG + chr7_2:77762752-77762771 Msa1078760:intron 20.0%
!! TGTCAAGTTCATAATATTAA+AGG - chr7_2:77762869-77762888 None:intergenic 20.0%
!! AATATATCTTGGAATATTCA+TGG + chr7_2:77762993-77763012 Msa1078760:intron 20.0%
!! TTAAGATATCTTCAATTTCT+GGG - chr7_2:77763095-77763114 None:intergenic 20.0%
!!! TTTAAGATATCTTCAATTTC+TGG - chr7_2:77763096-77763115 None:intergenic 20.0%
! GCTTACATTTATTTGTAAGT+TGG - chr7_2:77760620-77760639 None:intergenic 25.0%
! TGTTTAGATTAACAGTGAAT+AGG + chr7_2:77761450-77761469 Msa1078760:intron 25.0%
! GTTTAGATTAACAGTGAATA+GGG + chr7_2:77761451-77761470 Msa1078760:intron 25.0%
! TTGAAGCTTCAATAAAATCA+TGG + chr7_2:77761517-77761536 Msa1078760:intron 25.0%
!! TAGTGAATTTTGTCAAATCA+TGG - chr7_2:77761548-77761567 None:intergenic 25.0%
!! ATCTTACACAACTCAATTTT+AGG - chr7_2:77761594-77761613 None:intergenic 25.0%
! AAAACAGCAATCTTAATATG+AGG - chr7_2:77761799-77761818 None:intergenic 25.0%
!!! ATTAAGATTGCTGTTTTTCT+TGG + chr7_2:77761802-77761821 Msa1078760:CDS 25.0%
! TGCATTTCTATTCAAAATGT+TGG + chr7_2:77761916-77761935 Msa1078760:intron 25.0%
!! GATGTCTTCTTTATCATTTT+TGG + chr7_2:77762700-77762719 Msa1078760:intron 25.0%
!! TTGGACTTCTAAAGAAAAAT+TGG + chr7_2:77763350-77763369 Msa1078760:three_prime_UTR 25.0%
!!! GTTTTGATTAAGTGAAAGTG+TGG - chr7_2:77760655-77760674 None:intergenic 30.0%
GTGCAATAAAAATAGACAAG+TGG - chr7_2:77760805-77760824 None:intergenic 30.0%
TTATGTTAGTGCTTCATAGA+TGG - chr7_2:77760930-77760949 None:intergenic 30.0%
TCACACATTGAAACAATTGT+TGG - chr7_2:77761222-77761241 None:intergenic 30.0%
!! ATTGGTGAAAGTGTTTGATT+TGG + chr7_2:77761298-77761317 Msa1078760:CDS 30.0%
!! TGTTTGATTTGGAAGGAAAT+GGG + chr7_2:77761309-77761328 Msa1078760:CDS 30.0%
! AGTTTTTGCCAAAATTGTTG+TGG - chr7_2:77761492-77761511 None:intergenic 30.0%
TTAACAATTGCATATGTTGC+AGG + chr7_2:77761615-77761634 Msa1078760:intron 30.0%
AGCATAATCAAAACTAGAGA+AGG - chr7_2:77762018-77762037 None:intergenic 30.0%
CTTTGGCCTGTATTAAATAT+AGG - chr7_2:77762171-77762190 None:intergenic 30.0%
!! AAATTTTGTTTGCTCAGCAA+AGG - chr7_2:77762194-77762213 None:intergenic 30.0%
GCTGAGCAAACAAAATTTAA+AGG + chr7_2:77762196-77762215 Msa1078760:CDS 30.0%
GAGCAAACAAAATTTAAAGG+AGG + chr7_2:77762199-77762218 Msa1078760:CDS 30.0%
AACTCCAGAAACAAATTGTA+AGG - chr7_2:77762351-77762370 None:intergenic 30.0%
TGCAACAGCTAAAATTAACA+CGG - chr7_2:77762503-77762522 None:intergenic 30.0%
ATTATCCATACCACTCTTAA+AGG + chr7_2:77762668-77762687 Msa1078760:intron 30.0%
ATATTATGAACTTGACACTG+TGG + chr7_2:77762872-77762891 Msa1078760:intron 30.0%
TAACATCTCCTATATTCACA+AGG + chr7_2:77762937-77762956 Msa1078760:CDS 30.0%
TGTAAGTTGTGCAAGATTGT+TGG - chr7_2:77760905-77760924 None:intergenic 35.0%
TATAATCGGTATCTACGTGT+CGG - chr7_2:77760960-77760979 None:intergenic 35.0%
!! CAATTGTTGGCTCTCAAAAT+AGG - chr7_2:77761209-77761228 None:intergenic 35.0%
TTCAATGTGTGAATATGACC+AGG + chr7_2:77761230-77761249 Msa1078760:intron 35.0%
!! GTGAAAGTGTTTGATTTGGA+AGG + chr7_2:77761302-77761321 Msa1078760:CDS 35.0%
!! GTGTTTGATTTGGAAGGAAA+TGG + chr7_2:77761308-77761327 Msa1078760:CDS 35.0%
TCTTTCCACAAGTCAGAAAT+TGG - chr7_2:77761338-77761357 None:intergenic 35.0%
! TTTCTGACTTGTGGAAAGAT+AGG + chr7_2:77761339-77761358 Msa1078760:CDS 35.0%
CATGCACACATCTAAGAAAA+GGG - chr7_2:77761432-77761451 None:intergenic 35.0%
ACATGCACACATCTAAGAAA+AGG - chr7_2:77761433-77761452 None:intergenic 35.0%
! CAAGATAATCAGCTCTTTTG+CGG - chr7_2:77761652-77761671 None:intergenic 35.0%
TGATTATCTTGCATCCAAGA+AGG + chr7_2:77761661-77761680 Msa1078760:CDS 35.0%
AGCAGAAAACATTACCTTCT+TGG - chr7_2:77761678-77761697 None:intergenic 35.0%
!! CGTTGCTTTAAAGTCTTCTT+AGG + chr7_2:77761838-77761857 Msa1078760:CDS 35.0%
AAAAAACCACGAGTCATGTT+TGG - chr7_2:77761943-77761962 None:intergenic 35.0%
TTTGATTATGCTCTACCAAC+AGG + chr7_2:77762026-77762045 Msa1078760:intron 35.0%
!! TTCCAGCATTCTAAGATGTT+AGG - chr7_2:77762134-77762153 None:intergenic 35.0%
TACATTACAGAAACTAGCAC+AGG - chr7_2:77762246-77762265 None:intergenic 35.0%
!! TCTGCATAGATTTCTAGAAC+AGG - chr7_2:77762305-77762324 None:intergenic 35.0%
!! TAGGCTGTTTCTCTTACTTT+GGG - chr7_2:77762389-77762408 None:intergenic 35.0%
!! TTAGGCTGTTTCTCTTACTT+TGG - chr7_2:77762390-77762409 None:intergenic 35.0%
CAACAGCTAAAATTAACACG+GGG - chr7_2:77762501-77762520 None:intergenic 35.0%
GCAACAGCTAAAATTAACAC+GGG - chr7_2:77762502-77762521 None:intergenic 35.0%
!!! AATTTTAGCTGTTGCACTAC+AGG + chr7_2:77762507-77762526 Msa1078760:intron 35.0%
TTGGAAGCTTTCATTCGAAA+AGG + chr7_2:77762576-77762595 Msa1078760:CDS 35.0%
GATAGTGTAAGACTTCTTGT+AGG - chr7_2:77762638-77762657 None:intergenic 35.0%
TGATAAAGAAGACATCACAG+AGG - chr7_2:77762696-77762715 None:intergenic 35.0%
TGATAGAAGAAAGCTCTCTT+TGG + chr7_2:77762799-77762818 Msa1078760:intron 35.0%
CATACACACCTTGTGAATAT+AGG - chr7_2:77762948-77762967 None:intergenic 35.0%
!! TGAACAGTAGCTTTTTCTTG+AGG + chr7_2:77763186-77763205 Msa1078760:three_prime_UTR 35.0%
TGTGATATGAGCTTGTCATT+TGG - chr7_2:77763257-77763276 None:intergenic 35.0%
CAATCTGCAGTAAATTGTGT+TGG + chr7_2:77763331-77763350 Msa1078760:three_prime_UTR 35.0%
GATACATGATGCAGTTTGAG+TGG - chr7_2:77760699-77760718 None:intergenic 40.0%
CAAGTGGTTGAGAATACAAG+AGG - chr7_2:77760789-77760808 None:intergenic 40.0%
!! ACGTCTTCACTCTAAAGTCT+CGG + chr7_2:77761027-77761046 Msa1078760:intron 40.0%
AATAGGCAAGTGTTCAACAG+AGG - chr7_2:77761192-77761211 None:intergenic 40.0%
TACCTCAAGTTCACTGGAAT+TGG + chr7_2:77761280-77761299 Msa1078760:CDS 40.0%
! GGATTCCAATTTCTGACTTG+TGG + chr7_2:77761330-77761349 Msa1078760:CDS 40.0%
! TTGCATTTGCTCGTCACTTT+GGG + chr7_2:77761372-77761391 Msa1078760:CDS 40.0%
CAGTGAATAGGGAAGAATCA+CGG + chr7_2:77761462-77761481 Msa1078760:intron 40.0%
TTAGGAGCTAAGTGCATGTT+TGG - chr7_2:77761576-77761595 None:intergenic 40.0%
! GTCTTCTTAGGAGACGATTT+TGG + chr7_2:77761850-77761869 Msa1078760:CDS 40.0%
!!! TTAGGAGACGATTTTGGTTC+TGG + chr7_2:77761856-77761875 Msa1078760:CDS 40.0%
GCTCTACCAACAGGATATAA+TGG + chr7_2:77762035-77762054 Msa1078760:intron 40.0%
ACGCATCCATTATATCCTGT+TGG - chr7_2:77762044-77762063 None:intergenic 40.0%
! GGTGTAGCACTTGTATTGAT+TGG + chr7_2:77762066-77762085 Msa1078760:CDS 40.0%
CTCCTAACATCTTAGAATGC+TGG + chr7_2:77762129-77762148 Msa1078760:intron 40.0%
ATCAGCACTTTAACAGAACC+TGG + chr7_2:77762276-77762295 Msa1078760:intron 40.0%
!! GATTTCTAGAACAGGTAACC+AGG - chr7_2:77762297-77762316 None:intergenic 40.0%
! GAGGCCTTACAATTTGTTTC+TGG + chr7_2:77762344-77762363 Msa1078760:CDS 40.0%
! TCTTACTTTGGGGGTAAATG+TGG - chr7_2:77762378-77762397 None:intergenic 40.0%
!! AGGCTGTTTCTCTTACTTTG+GGG - chr7_2:77762388-77762407 None:intergenic 40.0%
TGGAAGGTTATCGACAAGAT+TGG + chr7_2:77762557-77762576 Msa1078760:CDS 40.0%
GAAAAGGATACTGTTAGCAG+AGG + chr7_2:77762592-77762611 Msa1078760:CDS 40.0%
! AGGATCCTTTAAGAGTGGTA+TGG - chr7_2:77762676-77762695 None:intergenic 40.0%
CTTTCTTCTATCAGCAAGCA+AGG - chr7_2:77762792-77762811 None:intergenic 40.0%
CAAGGAGGAATTATAGTTGC+AGG + chr7_2:77762902-77762921 Msa1078760:CDS 40.0%
TAGGAGATGTTACCTTTACC+AGG - chr7_2:77762929-77762948 None:intergenic 40.0%
! TGAGCTTGTCATTTGGCAAA+TGG - chr7_2:77763250-77763269 None:intergenic 40.0%
! AGAAGCAAAGGGTATAGTGG+TGG - chr7_2:77760727-77760746 None:intergenic 45.0%
! AGGAGAAGCAAAGGGTATAG+TGG - chr7_2:77760730-77760749 None:intergenic 45.0%
AGACAAAACTTGCCTGCAGA+AGG - chr7_2:77760750-77760769 None:intergenic 45.0%
TGAGGATACCTCAAGTTCAC+TGG + chr7_2:77761274-77761293 Msa1078760:CDS 45.0%
CACCAATTCCAGTGAACTTG+AGG - chr7_2:77761285-77761304 None:intergenic 45.0%
GTTGCATTTGCTCGTCACTT+TGG + chr7_2:77761371-77761390 Msa1078760:CDS 45.0%
! ACGGTGAGCCACAACAATTT+TGG + chr7_2:77761481-77761500 Msa1078760:intron 45.0%
!!! CGATTTTGGTTCTGGACTTC+TGG + chr7_2:77761864-77761883 Msa1078760:CDS 45.0%
!! CAGGATATAATGGATGCGTC+TGG + chr7_2:77762045-77762064 Msa1078760:intron 45.0%
!! GCACTTGTATTGATTGGACC+TGG + chr7_2:77762072-77762091 Msa1078760:CDS 45.0%
TGTACCTGATCAATGTTGCC+AGG - chr7_2:77762093-77762112 None:intergenic 45.0%
GGCAACATTGATCAGGTACA+CGG + chr7_2:77762093-77762112 Msa1078760:intron 45.0%
GCAACATTGATCAGGTACAC+GGG + chr7_2:77762094-77762113 Msa1078760:intron 45.0%
TGTTTGCTCAGCAAAGGCTT+TGG - chr7_2:77762188-77762207 None:intergenic 45.0%
CCTCATATGACGATTGAACG+GGG - chr7_2:77762328-77762347 None:intergenic 45.0%
GCCTCATATGACGATTGAAC+GGG - chr7_2:77762329-77762348 None:intergenic 45.0%
GGCCTCATATGACGATTGAA+CGG - chr7_2:77762330-77762349 None:intergenic 45.0%
!! GGCTGTTTCTCTTACTTTGG+GGG - chr7_2:77762387-77762406 None:intergenic 45.0%
AAGGATACTGTTAGCAGAGG+AGG + chr7_2:77762595-77762614 Msa1078760:CDS 45.0%
! CACAGAGGATCCTTTAAGAG+TGG - chr7_2:77762681-77762700 None:intergenic 45.0%
TATGAACTTGACACTGTGGC+AGG + chr7_2:77762876-77762895 Msa1078760:intron 45.0%
GGAATTATAGTTGCAGGTCC+TGG + chr7_2:77762908-77762927 Msa1078760:CDS 45.0%
ATAGTTGCAGGTCCTGGTAA+AGG + chr7_2:77762914-77762933 Msa1078760:CDS 45.0%
TCAAACGTGCTCACATGAGT+AGG + chr7_2:77763050-77763069 Msa1078760:intron 45.0%
CATGAGTAGGACAAAGAAGC+AGG + chr7_2:77763063-77763082 Msa1078760:intron 45.0%
GCTCGTGAAGAAAGAAGAGA+TGG + chr7_2:77763124-77763143 Msa1078760:exon 45.0%
TGTACATGCTCTACGATGAG+AGG - chr7_2:77763152-77763171 None:intergenic 45.0%
! CTTGTCATTTGGCAAATGGC+TGG - chr7_2:77763246-77763265 None:intergenic 45.0%
CCATGGAAGAACGTGGTCTT+AGG - chr7_2:77760557-77760576 None:intergenic 50.0%
CCTAAGACCACGTTCTTCCA+TGG + chr7_2:77760554-77760573 Msa1078760:exon 50.0%
!! AAAGGGTATAGTGGTGGTGG+TGG - chr7_2:77760721-77760740 None:intergenic 50.0%
! AGCAAAGGGTATAGTGGTGG+TGG - chr7_2:77760724-77760743 None:intergenic 50.0%
CCTGCAGAAGGAGAAGCAAA+GGG - chr7_2:77760738-77760757 None:intergenic 50.0%
GTTGGTCCAAACATGACTCG+TGG + chr7_2:77761934-77761953 Msa1078760:intron 50.0%
TGGACCTGGCAACATTGATC+AGG + chr7_2:77762086-77762105 Msa1078760:CDS 50.0%
CCCCGTTCAATCGTCATATG+AGG + chr7_2:77762325-77762344 Msa1078760:CDS 50.0%
TTAGCTGTTGCACTACAGGC+AGG + chr7_2:77762511-77762530 Msa1078760:intron 50.0%
ATACTGTTAGCAGAGGAGGC+TGG + chr7_2:77762599-77762618 Msa1078760:CDS 50.0%
! AAGCGTTGTAGAGCACGCCA+TGG - chr7_2:77760574-77760593 None:intergenic 55.0%
CCCTTTGCTTCTCCTTCTGC+AGG + chr7_2:77760735-77760754 Msa1078760:CDS 55.0%
GCCTGCAGAAGGAGAAGCAA+AGG - chr7_2:77760739-77760758 None:intergenic 55.0%
! AGCACTGGAGACTCAACTCC+TGG - chr7_2:77761251-77761270 None:intergenic 55.0%
AGGAGTTGAGTCTCCAGTGC+TGG + chr7_2:77761250-77761269 Msa1078760:intron 55.0%
GGAGTTGAGTCTCCAGTGCT+GGG + chr7_2:77761251-77761270 Msa1078760:intron 55.0%
TGACACTGTGGCAGGCAACA+AGG + chr7_2:77762884-77762903 Msa1078760:intron 55.0%
GAGCACGCCATGGAAGAACG+TGG - chr7_2:77760564-77760583 None:intergenic 60.0%
! TGAGTCTCCAGTGCTGGGTG+AGG + chr7_2:77761256-77761275 Msa1078760:CDS 60.0%
! GAGGTATCCTCACCCAGCAC+TGG - chr7_2:77761266-77761285 None:intergenic 60.0%
GCACACATCACTCAGCCGCA+TGG - chr7_2:77762441-77762460 None:intergenic 60.0%
CACTGTGGCAGGCAACAAGG+AGG + chr7_2:77762887-77762906 Msa1078760:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77760505 77763423 77760505 ID=Msa1078760;Name=Msa1078760
chr7_2 mRNA 77760505 77763423 77760505 ID=Msa1078760-mRNA-1;Parent=Msa1078760;Name=Msa1078760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=68|0.66|0.8|1|1|1|10|292|297
chr7_2 exon 77760505 77760756 77760505 ID=Msa1078760-mRNA-1:exon:19122;Parent=Msa1078760-mRNA-1
chr7_2 exon 77761252 77761393 77761252 ID=Msa1078760-mRNA-1:exon:19123;Parent=Msa1078760-mRNA-1
chr7_2 exon 77761637 77761682 77761637 ID=Msa1078760-mRNA-1:exon:19124;Parent=Msa1078760-mRNA-1
chr7_2 exon 77761790 77761933 77761790 ID=Msa1078760-mRNA-1:exon:19125;Parent=Msa1078760-mRNA-1
chr7_2 exon 77762048 77762107 77762048 ID=Msa1078760-mRNA-1:exon:19126;Parent=Msa1078760-mRNA-1
chr7_2 exon 77762184 77762220 77762184 ID=Msa1078760-mRNA-1:exon:19127;Parent=Msa1078760-mRNA-1
chr7_2 exon 77762324 77762391 77762324 ID=Msa1078760-mRNA-1:exon:19128;Parent=Msa1078760-mRNA-1
chr7_2 exon 77762529 77762620 77762529 ID=Msa1078760-mRNA-1:exon:19129;Parent=Msa1078760-mRNA-1
chr7_2 exon 77762898 77762958 77762898 ID=Msa1078760-mRNA-1:exon:19130;Parent=Msa1078760-mRNA-1
chr7_2 exon 77763072 77763423 77763072 ID=Msa1078760-mRNA-1:exon:19131;Parent=Msa1078760-mRNA-1
chr7_2 five_prime_UTR 77760505 77760572 77760505 ID=Msa1078760-mRNA-1:five_prime_utr;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77760573 77760756 77760573 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77761252 77761393 77761252 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77761637 77761682 77761637 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77761790 77761933 77761790 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77762048 77762107 77762048 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77762184 77762220 77762184 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77762324 77762391 77762324 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77762529 77762620 77762529 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77762898 77762958 77762898 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 CDS 77763072 77763131 77763072 ID=Msa1078760-mRNA-1:cds;Parent=Msa1078760-mRNA-1
chr7_2 three_prime_UTR 77763132 77763423 77763132 ID=Msa1078760-mRNA-1:three_prime_utr;Parent=Msa1078760-mRNA-1
Gene Sequence

>Msa1078760

ATGGCGTGCTCTACAACGCTTTTGTCGAATTCTTTTCACCTTAACCAACTTACAAATAAATGTAAGCTACATGTATATTCCACACTTTCACTTAATCAAAACCTTCCAATATATTCTAATAATCCACTCAAACTGCATCATGTATCCACCACCACCACTATACCCTTTGCTTCTCCTTCTGCAGGAGTTGAGTCTCCAGTGCTGGGTGAGGATACCTCAAGTTCACTGGAATTGGTGAAAGTGTTTGATTTGGAAGGAAATGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCAGTTGTTGCATTTGCTCGTCACTTTGGGTGTGTGCTTTGCCGCAAAAGAGCTGATTATCTTGCATCCAAGAAGCGTCTACCTCATATTAAGATTGCTGTTTTTCTTGGAAAAACATTTGAACGTTGCTTTAAAGTCTTCTTAGGAGACGATTTTGGTTCTGGACTTCTGGTTGTTAGAGATTATAGTATCAACAAGATATGCATTTCTATTCAAAATGATATAATGGATGCGTCTGGTGTAGCACTTGTATTGATTGGACCTGGCAACATTGATCAGGCCAAAGCCTTTGCTGAGCAAACAAAATTTAAAGGAGACCCCGTTCAATCGTCATATGAGGCCTTACAATTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAAGCAGGTCTTAAGATAATAGAATTGTATATGGAAGGTTATCGACAAGATTGGAAGCTTTCATTCGAAAAGGATACTGTTAGCAGAGGAGGCTGGCAACAAGGAGGAATTATAGTTGCAGGTCCTGGTAAAGGTAACATCTCCTATATTCACAAGGACAAAGAAGCAGGAGATGACCCAGAAATTGAAGATATCTTAAAAGCATGTTGCTCGTGA

Protein sequence

>Msa1078760

MACSTTLLSNSFHLNQLTNKCKLHVYSTLSLNQNLPIYSNNPLKLHHVSTTTTIPFASPSAGVESPVLGEDTSSSLELVKVFDLEGNGIPISDLWKDRKAVVAFARHFGCVLCRKRADYLASKKRLPHIKIAVFLGKTFERCFKVFLGDDFGSGLLVVRDYSINKICISIQNDIMDASGVALVLIGPGNIDQAKAFAEQTKFKGDPVQSSYEALQFVSGVLTTFTPKAGLKIIELYMEGYRQDWKLSFEKDTVSRGGWQQGGIIVAGPGKGNISYIHKDKEAGDDPEIEDILKACCS*