AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078590 MtrunA17_Chr7g0263551 79.402 301 8 3 1 297 1 251 6.08e-166 460
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078590 AT2G37240.1 56.989 279 52 5 31 297 26 248 7.37e-97 286

Find 78 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGATATCTTCAATTTC+TGG 0.106966 7_2:-77582150 None:intergenic
GCTGAGCAAACAAAATTTAA+AGG 0.173089 7_2:+77581253 Msa1078590:CDS
GAGGCCTTACAATTTGTTTC+TGG 0.198475 7_2:+77581401 Msa1078590:CDS
TCTTTCCACAAGTCAGAAAT+TGG 0.241459 7_2:-77580392 None:intergenic
CGTTGCTTTAAAGTCTTCTT+AGG 0.250203 7_2:+77580895 Msa1078590:CDS
AGCAGAAAACATTACCTTCT+TGG 0.265603 7_2:-77580732 None:intergenic
GTCTTCTTAGGAGACGATTT+TGG 0.288587 7_2:+77580907 Msa1078590:CDS
AGTGGATTATTAGAATATAT+TGG 0.314832 7_2:-77579735 None:intergenic
GCTCTACCAACAGGATATAA+TGG 0.342546 7_2:+77581092 Msa1078590:intron
TACCTCAAGTTCACTGGAAT+TGG 0.348966 7_2:+77580337 Msa1078590:CDS
CCATGGAAGAACGTGGTCTT+AGG 0.353672 7_2:-77579611 None:intergenic
TTTCTGACTTGTGGAAAGAT+AGG 0.355719 7_2:+77580396 Msa1078590:CDS
TTAAGATATCTTCAATTTCT+GGG 0.369252 7_2:-77582149 None:intergenic
GTGTTTGATTTGGAAGGAAA+TGG 0.371027 7_2:+77580365 Msa1078590:CDS
TGTTTGCTCAGCAAAGGCTT+TGG 0.376817 7_2:-77581242 None:intergenic
CCCTTTGCTTCTCCTTCTGC+AGG 0.378932 7_2:+77579792 Msa1078590:CDS
TTGCATTTGCTCGTCACTTT+GGG 0.383103 7_2:+77580429 Msa1078590:CDS
ATTTATTTGTAAGTTGGTTA+AGG 0.384818 7_2:-77579668 None:intergenic
TAAGATAATAGAATTGTATA+TGG 0.387939 7_2:+77581594 Msa1078590:CDS
AGGAGTTGAGTCTCCAGTGC+TGG 0.394517 7_2:+77580307 Msa1078590:intron
ATTGGTGAAAGTGTTTGATT+TGG 0.396812 7_2:+77580355 Msa1078590:CDS
CATACACACCTTGTGAATAT+AGG 0.399241 7_2:-77582002 None:intergenic
CAAGGAGGAATTATAGTTGC+AGG 0.415807 7_2:+77581959 Msa1078590:CDS
TGTTTGATTTGGAAGGAAAT+GGG 0.420452 7_2:+77580366 Msa1078590:CDS
GCCTCATATGACGATTGAAC+GGG 0.426222 7_2:-77581383 None:intergenic
GGTGTAGCACTTGTATTGAT+TGG 0.434510 7_2:+77581123 Msa1078590:CDS
GCTTACATTTATTTGTAAGT+TGG 0.444299 7_2:-77579674 None:intergenic
GGATTCCAATTTCTGACTTG+TGG 0.450614 7_2:+77580387 Msa1078590:CDS
TTGGAAGCTTTCATTCGAAA+AGG 0.452486 7_2:+77581633 Msa1078590:CDS
TGGAAGGTTATCGACAAGAT+TGG 0.474176 7_2:+77581614 Msa1078590:CDS
AACTCCAGAAACAAATTGTA+AGG 0.478715 7_2:-77581405 None:intergenic
TGTGATATGAGCTTGTCATT+TGG 0.486792 7_2:-77582311 None:intergenic
AGGAGAAGCAAAGGGTATAG+TGG 0.493170 7_2:-77579784 None:intergenic
GTTGCATTTGCTCGTCACTT+TGG 0.495048 7_2:+77580428 Msa1078590:CDS
CCTAAGACCACGTTCTTCCA+TGG 0.496654 7_2:+77579611 Msa1078590:exon
CAATCTGCAGTAAATTGTGT+TGG 0.497828 7_2:+77582388 Msa1078590:three_prime_UTR
AAAACAGCAATCTTAATATG+AGG 0.500548 7_2:-77580853 None:intergenic
AGCAAAGGGTATAGTGGTGG+TGG 0.503365 7_2:-77579778 None:intergenic
CCCCGTTCAATCGTCATATG+AGG 0.503849 7_2:+77581382 Msa1078590:CDS
CTTGTCATTTGGCAAATGGC+TGG 0.508063 7_2:-77582300 None:intergenic
CACCAATTCCAGTGAACTTG+AGG 0.509684 7_2:-77580339 None:intergenic
GGAATTATAGTTGCAGGTCC+TGG 0.514996 7_2:+77581965 Msa1078590:CDS
TGAGCTTGTCATTTGGCAAA+TGG 0.516874 7_2:-77582304 None:intergenic
TGAGGATACCTCAAGTTCAC+TGG 0.525231 7_2:+77580331 Msa1078590:CDS
GGCTGTTTCTCTTACTTTGG+GGG 0.526708 7_2:-77581441 None:intergenic
GTGAAAGTGTTTGATTTGGA+AGG 0.528775 7_2:+77580359 Msa1078590:CDS
TGGACCTGGCAACATTGATC+AGG 0.530445 7_2:+77581143 Msa1078590:CDS
ATAGTTGCAGGTCCTGGTAA+AGG 0.534747 7_2:+77581971 Msa1078590:CDS
CAGGATATAATGGATGCGTC+TGG 0.535386 7_2:+77581102 Msa1078590:intron
GAGGTATCCTCACCCAGCAC+TGG 0.539297 7_2:-77580320 None:intergenic
GCCTGCAGAAGGAGAAGCAA+AGG 0.542339 7_2:-77579793 None:intergenic
CATGAGTAGGACAAAGAAGC+AGG 0.545391 7_2:+77582120 Msa1078590:intron
GGAGTTGAGTCTCCAGTGCT+GGG 0.551780 7_2:+77580308 Msa1078590:intron
GATTATTAGAATATATTGGA+AGG 0.557430 7_2:-77579731 None:intergenic
TGTACCTGATCAATGTTGCC+AGG 0.557725 7_2:-77581147 None:intergenic
ATAATAGAATTGTATATGGA+AGG 0.563362 7_2:+77581598 Msa1078590:CDS
AGACAAAACTTGCCTGCAGA+AGG 0.565291 7_2:-77579804 None:intergenic
TGAGTCTCCAGTGCTGGGTG+AGG 0.575533 7_2:+77580313 Msa1078590:CDS
AAAGGGTATAGTGGTGGTGG+TGG 0.582654 7_2:-77579775 None:intergenic
AAGGATACTGTTAGCAGAGG+AGG 0.583125 7_2:+77581652 Msa1078590:CDS
CCTGCAGAAGGAGAAGCAAA+GGG 0.584870 7_2:-77579792 None:intergenic
TAGGAGATGTTACCTTTACC+AGG 0.585319 7_2:-77581983 None:intergenic
GCTCGTGAAGAAAGAAGAGA+TGG 0.588367 7_2:+77582181 Msa1078590:exon
TGATTATCTTGCATCCAAGA+AGG 0.588890 7_2:+77580718 Msa1078590:CDS
GATACATGATGCAGTTTGAG+TGG 0.593247 7_2:-77579753 None:intergenic
GGCCTCATATGACGATTGAA+CGG 0.593309 7_2:-77581384 None:intergenic
AGAAGCAAAGGGTATAGTGG+TGG 0.594832 7_2:-77579781 None:intergenic
TGACACTGTGGCAGGCAACA+AGG 0.606308 7_2:+77581941 Msa1078590:intron
ATACTGTTAGCAGAGGAGGC+TGG 0.626834 7_2:+77581656 Msa1078590:CDS
AAGCGTTGTAGAGCACGCCA+TGG 0.635852 7_2:-77579628 None:intergenic
GCACTTGTATTGATTGGACC+TGG 0.646245 7_2:+77581129 Msa1078590:CDS
GAGCAAACAAAATTTAAAGG+AGG 0.650865 7_2:+77581256 Msa1078590:CDS
GAAAAGGATACTGTTAGCAG+AGG 0.658204 7_2:+77581649 Msa1078590:CDS
TGTACATGCTCTACGATGAG+AGG 0.660110 7_2:-77582206 None:intergenic
CCTCATATGACGATTGAACG+GGG 0.682252 7_2:-77581382 None:intergenic
TAACATCTCCTATATTCACA+AGG 0.715027 7_2:+77581994 Msa1078590:CDS
CACTGTGGCAGGCAACAAGG+AGG 0.721602 7_2:+77581944 Msa1078590:intron
GAGCACGCCATGGAAGAACG+TGG 0.728516 7_2:-77579618 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTTCTTAAATTATAAT+CGG - chr7_2:77580031-77580050 None:intergenic 10.0%
!! TTACTTATGAATAAAAAATT+AGG - chr7_2:77581465-77581484 None:intergenic 10.0%
!! TATCAATAATATTAGTTAGA+TGG + chr7_2:77580110-77580129 Msa1078590:intron 15.0%
!! ATCAATAATATTAGTTAGAT+GGG + chr7_2:77580111-77580130 Msa1078590:intron 15.0%
!! AAACAAATATTAAACGAAAA+GGG - chr7_2:77581023-77581042 None:intergenic 15.0%
!! AAAACAAATATTAAACGAAA+AGG - chr7_2:77581024-77581043 None:intergenic 15.0%
!!! AGTTTTTGTTAAATATACAA+AGG + chr7_2:77581531-77581550 Msa1078590:intron 15.0%
!! TAAGATAATAGAATTGTATA+TGG + chr7_2:77581594-77581613 Msa1078590:CDS 15.0%
!! ATTCTATAAAATTGAGTATA+GGG - chr7_2:77582033-77582052 None:intergenic 15.0%
!! TATTCTATAAAATTGAGTAT+AGG - chr7_2:77582034-77582053 None:intergenic 15.0%
!!! CAATTTTATAGAATATATCT+TGG + chr7_2:77582039-77582058 Msa1078590:intron 15.0%
!!! ATTTATTTGTAAGTTGGTTA+AGG - chr7_2:77579671-77579690 None:intergenic 20.0%
!! GATTATTAGAATATATTGGA+AGG - chr7_2:77579734-77579753 None:intergenic 20.0%
!!! AGTGGATTATTAGAATATAT+TGG - chr7_2:77579738-77579757 None:intergenic 20.0%
!! AATACAAGTGATTAAATATG+TGG + chr7_2:77580046-77580065 Msa1078590:intron 20.0%
!!! AAAGAAAAAGAAAGTATGAT+AGG - chr7_2:77580171-77580190 None:intergenic 20.0%
!! TTCATTATTATACAGAAATG+AGG - chr7_2:77580219-77580238 None:intergenic 20.0%
!!! CTAGAATCAAATGATTTTTT+TGG - chr7_2:77580823-77580842 None:intergenic 20.0%
!! CTAATACCTATATTTAATAC+AGG + chr7_2:77581219-77581238 Msa1078590:intron 20.0%
!! AGTAATAAATAAAATCCATG+CGG + chr7_2:77581480-77581499 Msa1078590:intron 20.0%
!! ATAATAGAATTGTATATGGA+AGG + chr7_2:77581598-77581617 Msa1078590:CDS 20.0%
!! TACATTGAATCTATAATTAG+AGG + chr7_2:77581809-77581828 Msa1078590:intron 20.0%
!! TGTCAAGTTCATAATATTAA+AGG - chr7_2:77581926-77581945 None:intergenic 20.0%
!! AATATATCTTGGAATATTCA+TGG + chr7_2:77582050-77582069 Msa1078590:intron 20.0%
!! TTAAGATATCTTCAATTTCT+GGG - chr7_2:77582152-77582171 None:intergenic 20.0%
!!! TTTAAGATATCTTCAATTTC+TGG - chr7_2:77582153-77582172 None:intergenic 20.0%
! GCTTACATTTATTTGTAAGT+TGG - chr7_2:77579677-77579696 None:intergenic 25.0%
! TGTTTAGATTAACAGTGAAT+AGG + chr7_2:77580507-77580526 Msa1078590:intron 25.0%
! GTTTAGATTAACAGTGAATA+GGG + chr7_2:77580508-77580527 Msa1078590:intron 25.0%
! TTGAAGCTTCAATAAAATCA+TGG + chr7_2:77580574-77580593 Msa1078590:intron 25.0%
!! TAGTGAATTTTGTCAAATCA+TGG - chr7_2:77580605-77580624 None:intergenic 25.0%
!! ATCTTACACAACTCAATTTT+AGG - chr7_2:77580651-77580670 None:intergenic 25.0%
! AAAACAGCAATCTTAATATG+AGG - chr7_2:77580856-77580875 None:intergenic 25.0%
!!! ATTAAGATTGCTGTTTTTCT+TGG + chr7_2:77580859-77580878 Msa1078590:CDS 25.0%
! TGCATTTCTATTCAAAATGT+TGG + chr7_2:77580973-77580992 Msa1078590:intron 25.0%
!! GATGTCTTCTTTATCATTTT+TGG + chr7_2:77581757-77581776 Msa1078590:intron 25.0%
!! TTGGACTTCTAAAGAAAAAT+TGG + chr7_2:77582407-77582426 Msa1078590:three_prime_UTR 25.0%
!!! GTTTTGATTAAGTGAAAGTG+TGG - chr7_2:77579712-77579731 None:intergenic 30.0%
GTGCAATAAAAATAGACAAG+TGG - chr7_2:77579862-77579881 None:intergenic 30.0%
TTATGTTAGTGCTTCATAGA+TGG - chr7_2:77579987-77580006 None:intergenic 30.0%
TCACACATTGAAACAATTGT+TGG - chr7_2:77580279-77580298 None:intergenic 30.0%
!! ATTGGTGAAAGTGTTTGATT+TGG + chr7_2:77580355-77580374 Msa1078590:CDS 30.0%
!! TGTTTGATTTGGAAGGAAAT+GGG + chr7_2:77580366-77580385 Msa1078590:CDS 30.0%
! AGTTTTTGCCAAAATTGTTG+TGG - chr7_2:77580549-77580568 None:intergenic 30.0%
TTAACAATTGCATATGTTGC+AGG + chr7_2:77580672-77580691 Msa1078590:intron 30.0%
AGCATAATCAAAACTAGAGA+AGG - chr7_2:77581075-77581094 None:intergenic 30.0%
CTTTGGCCTGTATTAAATAT+AGG - chr7_2:77581228-77581247 None:intergenic 30.0%
!! AAATTTTGTTTGCTCAGCAA+AGG - chr7_2:77581251-77581270 None:intergenic 30.0%
GCTGAGCAAACAAAATTTAA+AGG + chr7_2:77581253-77581272 Msa1078590:CDS 30.0%
GAGCAAACAAAATTTAAAGG+AGG + chr7_2:77581256-77581275 Msa1078590:CDS 30.0%
AACTCCAGAAACAAATTGTA+AGG - chr7_2:77581408-77581427 None:intergenic 30.0%
TGCAACAGCTAAAATTAACA+CGG - chr7_2:77581560-77581579 None:intergenic 30.0%
ATTATCCATACCACTCTTAA+AGG + chr7_2:77581725-77581744 Msa1078590:intron 30.0%
ATATTATGAACTTGACACTG+TGG + chr7_2:77581929-77581948 Msa1078590:intron 30.0%
TAACATCTCCTATATTCACA+AGG + chr7_2:77581994-77582013 Msa1078590:CDS 30.0%
TGTAAGTTGTGCAAGATTGT+TGG - chr7_2:77579962-77579981 None:intergenic 35.0%
TATAATCGGTATCTACGTGT+CGG - chr7_2:77580017-77580036 None:intergenic 35.0%
!! CAATTGTTGGCTCTCAAAAT+AGG - chr7_2:77580266-77580285 None:intergenic 35.0%
TTCAATGTGTGAATATGACC+AGG + chr7_2:77580287-77580306 Msa1078590:intron 35.0%
!! GTGAAAGTGTTTGATTTGGA+AGG + chr7_2:77580359-77580378 Msa1078590:CDS 35.0%
!! GTGTTTGATTTGGAAGGAAA+TGG + chr7_2:77580365-77580384 Msa1078590:CDS 35.0%
TCTTTCCACAAGTCAGAAAT+TGG - chr7_2:77580395-77580414 None:intergenic 35.0%
! TTTCTGACTTGTGGAAAGAT+AGG + chr7_2:77580396-77580415 Msa1078590:CDS 35.0%
CATGCACACATCTAAGAAAA+GGG - chr7_2:77580489-77580508 None:intergenic 35.0%
ACATGCACACATCTAAGAAA+AGG - chr7_2:77580490-77580509 None:intergenic 35.0%
! CAAGATAATCAGCTCTTTTG+CGG - chr7_2:77580709-77580728 None:intergenic 35.0%
TGATTATCTTGCATCCAAGA+AGG + chr7_2:77580718-77580737 Msa1078590:CDS 35.0%
AGCAGAAAACATTACCTTCT+TGG - chr7_2:77580735-77580754 None:intergenic 35.0%
!! CGTTGCTTTAAAGTCTTCTT+AGG + chr7_2:77580895-77580914 Msa1078590:CDS 35.0%
AAAAAACCACGAGTCATGTT+TGG - chr7_2:77581000-77581019 None:intergenic 35.0%
TTTGATTATGCTCTACCAAC+AGG + chr7_2:77581083-77581102 Msa1078590:intron 35.0%
!! TTCCAGCATTCTAAGATGTT+AGG - chr7_2:77581191-77581210 None:intergenic 35.0%
TACATTACAGAAACTAGCAC+AGG - chr7_2:77581303-77581322 None:intergenic 35.0%
!! TCTGCATAGATTTCTAGAAC+AGG - chr7_2:77581362-77581381 None:intergenic 35.0%
!! TAGGCTGTTTCTCTTACTTT+GGG - chr7_2:77581446-77581465 None:intergenic 35.0%
!! TTAGGCTGTTTCTCTTACTT+TGG - chr7_2:77581447-77581466 None:intergenic 35.0%
CAACAGCTAAAATTAACACG+GGG - chr7_2:77581558-77581577 None:intergenic 35.0%
GCAACAGCTAAAATTAACAC+GGG - chr7_2:77581559-77581578 None:intergenic 35.0%
!!! AATTTTAGCTGTTGCACTAC+AGG + chr7_2:77581564-77581583 Msa1078590:intron 35.0%
TTGGAAGCTTTCATTCGAAA+AGG + chr7_2:77581633-77581652 Msa1078590:CDS 35.0%
GATAGTGTAAGACTTCTTGT+AGG - chr7_2:77581695-77581714 None:intergenic 35.0%
TGATAAAGAAGACATCACAG+AGG - chr7_2:77581753-77581772 None:intergenic 35.0%
TGATAGAAGAAAGCTCTCTT+TGG + chr7_2:77581856-77581875 Msa1078590:intron 35.0%
CATACACACCTTGTGAATAT+AGG - chr7_2:77582005-77582024 None:intergenic 35.0%
!! TGAACAGTAGCTTTTTCTTG+AGG + chr7_2:77582243-77582262 Msa1078590:three_prime_UTR 35.0%
TGTGATATGAGCTTGTCATT+TGG - chr7_2:77582314-77582333 None:intergenic 35.0%
CAATCTGCAGTAAATTGTGT+TGG + chr7_2:77582388-77582407 Msa1078590:three_prime_UTR 35.0%
GATACATGATGCAGTTTGAG+TGG - chr7_2:77579756-77579775 None:intergenic 40.0%
CAAGTGGTTGAGAATACAAG+AGG - chr7_2:77579846-77579865 None:intergenic 40.0%
!! ACGTCTTCACTCTAAAGTCT+CGG + chr7_2:77580084-77580103 Msa1078590:intron 40.0%
AATAGGCAAGTGTTCAACAG+AGG - chr7_2:77580249-77580268 None:intergenic 40.0%
TACCTCAAGTTCACTGGAAT+TGG + chr7_2:77580337-77580356 Msa1078590:CDS 40.0%
! GGATTCCAATTTCTGACTTG+TGG + chr7_2:77580387-77580406 Msa1078590:CDS 40.0%
! TTGCATTTGCTCGTCACTTT+GGG + chr7_2:77580429-77580448 Msa1078590:CDS 40.0%
CAGTGAATAGGGAAGAATCA+CGG + chr7_2:77580519-77580538 Msa1078590:intron 40.0%
TTAGGAGCTAAGTGCATGTT+TGG - chr7_2:77580633-77580652 None:intergenic 40.0%
! GTCTTCTTAGGAGACGATTT+TGG + chr7_2:77580907-77580926 Msa1078590:CDS 40.0%
!!! TTAGGAGACGATTTTGGTTC+TGG + chr7_2:77580913-77580932 Msa1078590:CDS 40.0%
GCTCTACCAACAGGATATAA+TGG + chr7_2:77581092-77581111 Msa1078590:intron 40.0%
ACGCATCCATTATATCCTGT+TGG - chr7_2:77581101-77581120 None:intergenic 40.0%
! GGTGTAGCACTTGTATTGAT+TGG + chr7_2:77581123-77581142 Msa1078590:CDS 40.0%
CTCCTAACATCTTAGAATGC+TGG + chr7_2:77581186-77581205 Msa1078590:intron 40.0%
ATCAGCACTTTAACAGAACC+TGG + chr7_2:77581333-77581352 Msa1078590:intron 40.0%
!! GATTTCTAGAACAGGTAACC+AGG - chr7_2:77581354-77581373 None:intergenic 40.0%
! GAGGCCTTACAATTTGTTTC+TGG + chr7_2:77581401-77581420 Msa1078590:CDS 40.0%
! TCTTACTTTGGGGGTAAATG+TGG - chr7_2:77581435-77581454 None:intergenic 40.0%
!! AGGCTGTTTCTCTTACTTTG+GGG - chr7_2:77581445-77581464 None:intergenic 40.0%
TGGAAGGTTATCGACAAGAT+TGG + chr7_2:77581614-77581633 Msa1078590:CDS 40.0%
GAAAAGGATACTGTTAGCAG+AGG + chr7_2:77581649-77581668 Msa1078590:CDS 40.0%
! AGGATCCTTTAAGAGTGGTA+TGG - chr7_2:77581733-77581752 None:intergenic 40.0%
CTTTCTTCTATCAGCAAGCA+AGG - chr7_2:77581849-77581868 None:intergenic 40.0%
CAAGGAGGAATTATAGTTGC+AGG + chr7_2:77581959-77581978 Msa1078590:CDS 40.0%
TAGGAGATGTTACCTTTACC+AGG - chr7_2:77581986-77582005 None:intergenic 40.0%
! TGAGCTTGTCATTTGGCAAA+TGG - chr7_2:77582307-77582326 None:intergenic 40.0%
! AGAAGCAAAGGGTATAGTGG+TGG - chr7_2:77579784-77579803 None:intergenic 45.0%
! AGGAGAAGCAAAGGGTATAG+TGG - chr7_2:77579787-77579806 None:intergenic 45.0%
AGACAAAACTTGCCTGCAGA+AGG - chr7_2:77579807-77579826 None:intergenic 45.0%
TGAGGATACCTCAAGTTCAC+TGG + chr7_2:77580331-77580350 Msa1078590:CDS 45.0%
CACCAATTCCAGTGAACTTG+AGG - chr7_2:77580342-77580361 None:intergenic 45.0%
GTTGCATTTGCTCGTCACTT+TGG + chr7_2:77580428-77580447 Msa1078590:CDS 45.0%
! ACGGTGAGCCACAACAATTT+TGG + chr7_2:77580538-77580557 Msa1078590:intron 45.0%
!!! CGATTTTGGTTCTGGACTTC+TGG + chr7_2:77580921-77580940 Msa1078590:CDS 45.0%
!! CAGGATATAATGGATGCGTC+TGG + chr7_2:77581102-77581121 Msa1078590:intron 45.0%
!! GCACTTGTATTGATTGGACC+TGG + chr7_2:77581129-77581148 Msa1078590:CDS 45.0%
TGTACCTGATCAATGTTGCC+AGG - chr7_2:77581150-77581169 None:intergenic 45.0%
GGCAACATTGATCAGGTACA+CGG + chr7_2:77581150-77581169 Msa1078590:intron 45.0%
GCAACATTGATCAGGTACAC+GGG + chr7_2:77581151-77581170 Msa1078590:intron 45.0%
TGTTTGCTCAGCAAAGGCTT+TGG - chr7_2:77581245-77581264 None:intergenic 45.0%
CCTCATATGACGATTGAACG+GGG - chr7_2:77581385-77581404 None:intergenic 45.0%
GCCTCATATGACGATTGAAC+GGG - chr7_2:77581386-77581405 None:intergenic 45.0%
GGCCTCATATGACGATTGAA+CGG - chr7_2:77581387-77581406 None:intergenic 45.0%
!! GGCTGTTTCTCTTACTTTGG+GGG - chr7_2:77581444-77581463 None:intergenic 45.0%
AAGGATACTGTTAGCAGAGG+AGG + chr7_2:77581652-77581671 Msa1078590:CDS 45.0%
! CACAGAGGATCCTTTAAGAG+TGG - chr7_2:77581738-77581757 None:intergenic 45.0%
TATGAACTTGACACTGTGGC+AGG + chr7_2:77581933-77581952 Msa1078590:intron 45.0%
GGAATTATAGTTGCAGGTCC+TGG + chr7_2:77581965-77581984 Msa1078590:CDS 45.0%
ATAGTTGCAGGTCCTGGTAA+AGG + chr7_2:77581971-77581990 Msa1078590:CDS 45.0%
TCAAACGTGCTCACATGAGT+AGG + chr7_2:77582107-77582126 Msa1078590:intron 45.0%
CATGAGTAGGACAAAGAAGC+AGG + chr7_2:77582120-77582139 Msa1078590:intron 45.0%
GCTCGTGAAGAAAGAAGAGA+TGG + chr7_2:77582181-77582200 Msa1078590:exon 45.0%
TGTACATGCTCTACGATGAG+AGG - chr7_2:77582209-77582228 None:intergenic 45.0%
! CTTGTCATTTGGCAAATGGC+TGG - chr7_2:77582303-77582322 None:intergenic 45.0%
CCATGGAAGAACGTGGTCTT+AGG - chr7_2:77579614-77579633 None:intergenic 50.0%
CCTAAGACCACGTTCTTCCA+TGG + chr7_2:77579611-77579630 Msa1078590:exon 50.0%
!! AAAGGGTATAGTGGTGGTGG+TGG - chr7_2:77579778-77579797 None:intergenic 50.0%
! AGCAAAGGGTATAGTGGTGG+TGG - chr7_2:77579781-77579800 None:intergenic 50.0%
CCTGCAGAAGGAGAAGCAAA+GGG - chr7_2:77579795-77579814 None:intergenic 50.0%
GTTGGTCCAAACATGACTCG+TGG + chr7_2:77580991-77581010 Msa1078590:intron 50.0%
TGGACCTGGCAACATTGATC+AGG + chr7_2:77581143-77581162 Msa1078590:CDS 50.0%
CCCCGTTCAATCGTCATATG+AGG + chr7_2:77581382-77581401 Msa1078590:CDS 50.0%
TTAGCTGTTGCACTACAGGC+AGG + chr7_2:77581568-77581587 Msa1078590:intron 50.0%
ATACTGTTAGCAGAGGAGGC+TGG + chr7_2:77581656-77581675 Msa1078590:CDS 50.0%
! AAGCGTTGTAGAGCACGCCA+TGG - chr7_2:77579631-77579650 None:intergenic 55.0%
CCCTTTGCTTCTCCTTCTGC+AGG + chr7_2:77579792-77579811 Msa1078590:CDS 55.0%
GCCTGCAGAAGGAGAAGCAA+AGG - chr7_2:77579796-77579815 None:intergenic 55.0%
! AGCACTGGAGACTCAACTCC+TGG - chr7_2:77580308-77580327 None:intergenic 55.0%
AGGAGTTGAGTCTCCAGTGC+TGG + chr7_2:77580307-77580326 Msa1078590:intron 55.0%
GGAGTTGAGTCTCCAGTGCT+GGG + chr7_2:77580308-77580327 Msa1078590:intron 55.0%
TGACACTGTGGCAGGCAACA+AGG + chr7_2:77581941-77581960 Msa1078590:intron 55.0%
GAGCACGCCATGGAAGAACG+TGG - chr7_2:77579621-77579640 None:intergenic 60.0%
! TGAGTCTCCAGTGCTGGGTG+AGG + chr7_2:77580313-77580332 Msa1078590:CDS 60.0%
! GAGGTATCCTCACCCAGCAC+TGG - chr7_2:77580323-77580342 None:intergenic 60.0%
GCACACATCACTCAGCCGCA+TGG - chr7_2:77581498-77581517 None:intergenic 60.0%
CACTGTGGCAGGCAACAAGG+AGG + chr7_2:77581944-77581963 Msa1078590:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77579562 77582480 77579562 ID=Msa1078590;Name=Msa1078590
chr7_2 mRNA 77579562 77582480 77579562 ID=Msa1078590-mRNA-1;Parent=Msa1078590;Name=Msa1078590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=68|0.66|0.8|1|1|1|10|292|297
chr7_2 exon 77579562 77579813 77579562 ID=Msa1078590-mRNA-1:exon:19024;Parent=Msa1078590-mRNA-1
chr7_2 exon 77580309 77580450 77580309 ID=Msa1078590-mRNA-1:exon:19025;Parent=Msa1078590-mRNA-1
chr7_2 exon 77580694 77580739 77580694 ID=Msa1078590-mRNA-1:exon:19026;Parent=Msa1078590-mRNA-1
chr7_2 exon 77580847 77580990 77580847 ID=Msa1078590-mRNA-1:exon:19027;Parent=Msa1078590-mRNA-1
chr7_2 exon 77581105 77581164 77581105 ID=Msa1078590-mRNA-1:exon:19028;Parent=Msa1078590-mRNA-1
chr7_2 exon 77581241 77581277 77581241 ID=Msa1078590-mRNA-1:exon:19029;Parent=Msa1078590-mRNA-1
chr7_2 exon 77581381 77581448 77581381 ID=Msa1078590-mRNA-1:exon:19030;Parent=Msa1078590-mRNA-1
chr7_2 exon 77581586 77581677 77581586 ID=Msa1078590-mRNA-1:exon:19031;Parent=Msa1078590-mRNA-1
chr7_2 exon 77581955 77582015 77581955 ID=Msa1078590-mRNA-1:exon:19032;Parent=Msa1078590-mRNA-1
chr7_2 exon 77582129 77582480 77582129 ID=Msa1078590-mRNA-1:exon:19033;Parent=Msa1078590-mRNA-1
chr7_2 five_prime_UTR 77579562 77579629 77579562 ID=Msa1078590-mRNA-1:five_prime_utr;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77579630 77579813 77579630 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77580309 77580450 77580309 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77580694 77580739 77580694 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77580847 77580990 77580847 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77581105 77581164 77581105 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77581241 77581277 77581241 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77581381 77581448 77581381 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77581586 77581677 77581586 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77581955 77582015 77581955 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 CDS 77582129 77582188 77582129 ID=Msa1078590-mRNA-1:cds;Parent=Msa1078590-mRNA-1
chr7_2 three_prime_UTR 77582189 77582480 77582189 ID=Msa1078590-mRNA-1:three_prime_utr;Parent=Msa1078590-mRNA-1
Gene Sequence

>Msa1078590

ATGGCGTGCTCTACAACGCTTTTGTCGAATTCTTTTCACCTTAACCAACTTACAAATAAATGTAAGCTACATGTATATTCCACACTTTCACTTAATCAAAACCTTCCAATATATTCTAATAATCCACTCAAACTGCATCATGTATCCACCACCACCACTATACCCTTTGCTTCTCCTTCTGCAGGAGTTGAGTCTCCAGTGCTGGGTGAGGATACCTCAAGTTCACTGGAATTGGTGAAAGTGTTTGATTTGGAAGGAAATGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCAGTTGTTGCATTTGCTCGTCACTTTGGGTGTGTGCTTTGCCGCAAAAGAGCTGATTATCTTGCATCCAAGAAGCGTCTACCTCATATTAAGATTGCTGTTTTTCTTGGAAAAACATTTGAACGTTGCTTTAAAGTCTTCTTAGGAGACGATTTTGGTTCTGGACTTCTGGTTGTTAGAGATTATAGTATCAACAAGATATGCATTTCTATTCAAAATGATATAATGGATGCGTCTGGTGTAGCACTTGTATTGATTGGACCTGGCAACATTGATCAGGCCAAAGCCTTTGCTGAGCAAACAAAATTTAAAGGAGACCCCGTTCAATCGTCATATGAGGCCTTACAATTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAAGCAGGTCTTAAGATAATAGAATTGTATATGGAAGGTTATCGACAAGATTGGAAGCTTTCATTCGAAAAGGATACTGTTAGCAGAGGAGGCTGGCAACAAGGAGGAATTATAGTTGCAGGTCCTGGTAAAGGTAACATCTCCTATATTCACAAGGACAAAGAAGCAGGAGATGACCCAGAAATTGAAGATATCTTAAAAGCATGTTGCTCGTGA

Protein sequence

>Msa1078590

MACSTTLLSNSFHLNQLTNKCKLHVYSTLSLNQNLPIYSNNPLKLHHVSTTTTIPFASPSAGVESPVLGEDTSSSLELVKVFDLEGNGIPISDLWKDRKAVVAFARHFGCVLCRKRADYLASKKRLPHIKIAVFLGKTFERCFKVFLGDDFGSGLLVVRDYSINKICISIQNDIMDASGVALVLIGPGNIDQAKAFAEQTKFKGDPVQSSYEALQFVSGVLTTFTPKAGLKIIELYMEGYRQDWKLSFEKDTVSRGGWQQGGIIVAGPGKGNISYIHKDKEAGDDPEIEDILKACCS*