Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008620 | sp|Q9LYD8|GGLO3_ARATH | 61.939 | 557 | 179 | 4 | 28 | 553 | 22 | 576 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008620 | A0A1S2Y2S8 | 76.884 | 597 | 100 | 3 | 4 | 565 | 5 | 598 | 0.0 | 941 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008620 | Msa0008880 | 0.941439 | 4.151681e-101 | -8.615850e-47 |
| Msa0008620 | Msa0058850 | 0.857555 | 1.506687e-62 | -8.615850e-47 |
| Msa0008620 | Msa0058910 | 0.865349 | 6.298677e-65 | -8.615850e-47 |
| Msa0008620 | Msa0103720 | 0.874450 | 6.689365e-68 | -8.615850e-47 |
| Msa0008620 | Msa0150100 | 0.871373 | 7.180754e-67 | -8.615850e-47 |
| Msa0008620 | Msa0150150 | 0.841873 | 3.648773e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008620 | MtrunA17_Chr1g0157561 | 93.889 | 360 | 22 | 0 | 205 | 564 | 19 | 378 | 0.0 | 711 |
| Msa0008620 | MtrunA17_Chr8g0346061 | 45.026 | 573 | 278 | 6 | 14 | 552 | 10 | 579 | 2.60e-178 | 515 |
| Msa0008620 | MtrunA17_Chr5g0394031 | 45.617 | 559 | 268 | 6 | 28 | 553 | 28 | 583 | 9.89e-165 | 481 |
| Msa0008620 | MtrunA17_Chr1g0157571 | 92.417 | 211 | 15 | 1 | 1 | 211 | 1 | 210 | 3.12e-138 | 400 |
| Msa0008620 | MtrunA17_Chr1g0157541 | 93.233 | 133 | 9 | 0 | 342 | 474 | 3 | 135 | 1.49e-85 | 261 |
| Msa0008620 | MtrunA17_Chr1g0172001 | 91.026 | 78 | 7 | 0 | 378 | 455 | 11 | 88 | 2.02e-43 | 150 |
| Msa0008620 | MtrunA17_Chr7g0276181 | 47.059 | 136 | 70 | 1 | 420 | 553 | 16 | 151 | 5.43e-36 | 132 |
| Msa0008620 | MtrunA17_Chr7g0276161 | 40.678 | 118 | 68 | 1 | 30 | 145 | 27 | 144 | 2.96e-25 | 102 |
| Msa0008620 | MtrunA17_Chr1g0159391 | 82.143 | 56 | 9 | 1 | 484 | 538 | 10 | 65 | 7.17e-25 | 100 |
| Msa0008620 | MtrunA17_Chr8g0346031 | 42.373 | 118 | 61 | 2 | 163 | 276 | 12 | 126 | 4.62e-21 | 89.4 |
| Msa0008620 | MtrunA17_Chr8g0346041 | 66.667 | 45 | 15 | 0 | 428 | 472 | 6 | 50 | 2.25e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008620 | AT5G11540.1 | 61.939 | 557 | 179 | 4 | 28 | 553 | 22 | 576 | 0.0 | 711 |
| Msa0008620 | AT2G46740.1 | 43.339 | 563 | 280 | 6 | 27 | 552 | 25 | 585 | 8.62e-170 | 494 |
| Msa0008620 | AT2G46750.1 | 43.872 | 563 | 277 | 6 | 27 | 552 | 21 | 581 | 2.50e-169 | 493 |
| Msa0008620 | AT2G46760.1 | 42.388 | 578 | 294 | 6 | 9 | 552 | 17 | 589 | 3.34e-168 | 491 |
| Msa0008620 | AT5G56490.1 | 42.096 | 563 | 289 | 6 | 30 | 557 | 17 | 577 | 6.92e-152 | 448 |
| Msa0008620 | AT1G32300.1 | 41.577 | 558 | 289 | 6 | 30 | 552 | 18 | 573 | 7.60e-152 | 449 |
| Msa0008620 | AT5G56470.1 | 50.424 | 236 | 112 | 3 | 322 | 552 | 12 | 247 | 8.82e-81 | 254 |
Find 102 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTATAGATACGATTTC+AGG | 0.197781 | 1_1:-12441605 | Msa0008620:CDS |
| GTTTGGTGGCTGCACCTTAT+TGG | 0.236643 | 1_1:-12443481 | Msa0008620:CDS |
| TCCATCACCAGAGGCATCTA+AGG | 0.274681 | 1_1:+12441578 | None:intergenic |
| CCAAGATGTGTGGGAGGAAT+TGG | 0.278330 | 1_1:-12440580 | Msa0008620:CDS |
| ATTATTCATTGAAGTGAATA+AGG | 0.280510 | 1_1:+12440228 | None:intergenic |
| AGACATTGTAGTCCTCAAAA+AGG | 0.283988 | 1_1:-12440321 | Msa0008620:CDS |
| TTTGGTGGCTGCACCTTATT+GGG | 0.293408 | 1_1:-12443480 | Msa0008620:CDS |
| GGAGTTATGCTATGGATTAA+AGG | 0.297527 | 1_1:+12443860 | None:intergenic |
| TTTCCTTGATAGCCAATTAC+AGG | 0.297690 | 1_1:+12440915 | None:intergenic |
| TAAACAGCTGTGTGCCTTGA+TGG | 0.304478 | 1_1:+12441621 | None:intergenic |
| GCATGGGATCCAAGAATAAA+AGG | 0.315226 | 1_1:-12440840 | Msa0008620:CDS |
| TTGACTGTAACAGTTGATTC+AGG | 0.326698 | 1_1:-12443551 | Msa0008620:CDS |
| TTCACCGGCTATCCTGTAAT+TGG | 0.332527 | 1_1:-12440927 | Msa0008620:CDS |
| TGTGGCATAGACATCTATAA+TGG | 0.334215 | 1_1:-12440717 | Msa0008620:CDS |
| GTGATAAAGGCAACATTGAT+AGG | 0.342663 | 1_1:+12440111 | None:intergenic |
| GGTTTAGTCTAGGAGTAAAT+TGG | 0.363582 | 1_1:+12440601 | None:intergenic |
| CGAAGTTGTTCTTCTGTTGT+TGG | 0.372174 | 1_1:+12443737 | None:intergenic |
| CTGAGAGACCAGTATTTCAT+TGG | 0.374536 | 1_1:+12441530 | None:intergenic |
| CCAATTCCTCCCACACATCT+TGG | 0.377015 | 1_1:+12440580 | None:intergenic |
| GAGTTATGCTATGGATTAAA+GGG | 0.379012 | 1_1:+12443861 | None:intergenic |
| AAAGCGAACACACGTGATAA+AGG | 0.384174 | 1_1:+12440087 | None:intergenic |
| TTTGAAGGGTGCAGATTGTT+TGG | 0.385906 | 1_1:+12443816 | None:intergenic |
| GATGGAGTCTATGATTTCAT+TGG | 0.393398 | 1_1:-12441561 | Msa0008620:CDS |
| GATTGTTTGGTTGCATTGGA+TGG | 0.395081 | 1_1:+12443829 | None:intergenic |
| CACATACTTCCACTATTCAT+AGG | 0.396512 | 1_1:-12443890 | Msa0008620:CDS |
| ATTTCAAGCCAATGAAATAC+TGG | 0.405185 | 1_1:-12441538 | Msa0008620:CDS |
| ACGTGATAAAGGTGTGATAA+AGG | 0.406426 | 1_1:+12440098 | None:intergenic |
| TATTGGGAAGGTGTTACAAT+TGG | 0.410864 | 1_1:-12443464 | Msa0008620:CDS |
| TGCAGATTGTTTGGTTGCAT+TGG | 0.412058 | 1_1:+12443825 | None:intergenic |
| TGGGAAGGTGTTACAATTGG+AGG | 0.412609 | 1_1:-12443461 | Msa0008620:CDS |
| AGGGTTCCCTTAGATGCCTC+TGG | 0.413308 | 1_1:-12441585 | Msa0008620:CDS |
| CAGGATAGCCGGTGAAGATT+AGG | 0.414855 | 1_1:+12440934 | None:intergenic |
| ATGCTATGGATTAAAGGGTT+TGG | 0.417400 | 1_1:+12443866 | None:intergenic |
| CAGGAATTGGTAAAATTTGA+TGG | 0.425139 | 1_1:-12440381 | Msa0008620:CDS |
| ATTGTAACACCTTCCCAATA+AGG | 0.428496 | 1_1:+12443467 | None:intergenic |
| GCCATTGTTCTTCAAACCAT+TGG | 0.432966 | 1_1:+12440956 | None:intergenic |
| CCCTTAGATGCCTCTGGTGA+TGG | 0.436882 | 1_1:-12441579 | Msa0008620:CDS |
| ACAAGGAAGCTAAAGTTTGT+AGG | 0.446243 | 1_1:-12440272 | Msa0008620:CDS |
| GTTCCTAGTTCTGAATTTGA+AGG | 0.451250 | 1_1:-12443353 | Msa0008620:CDS |
| ATGAGTTTGCGGACATAACT+TGG | 0.456119 | 1_1:-12441647 | Msa0008620:CDS |
| ATTGGAGGTGTTATTAGTAC+TGG | 0.462333 | 1_1:-12443446 | Msa0008620:CDS |
| AGTAATATATATGAAACAAA+TGG | 0.463021 | 1_1:+12440055 | None:intergenic |
| TGCACATGGTAGTTCTTGGT+GGG | 0.463800 | 1_1:-12443423 | Msa0008620:CDS |
| TTGCATTGGATGGGAGATTG+TGG | 0.467626 | 1_1:+12443839 | None:intergenic |
| GTGCACATGGTAGTTCTTGG+TGG | 0.467984 | 1_1:-12443424 | Msa0008620:CDS |
| GAAGTTGTTCTTCTGTTGTT+GGG | 0.468307 | 1_1:+12443738 | None:intergenic |
| TAAAATCCACCACATCCAAT+AGG | 0.468753 | 1_1:+12443922 | None:intergenic |
| AAAATTTGATGGCTGTGCTT+TGG | 0.471057 | 1_1:-12440370 | Msa0008620:CDS |
| TCTCAGTCAGTTAGAGCAGC+AGG | 0.472911 | 1_1:-12441513 | Msa0008620:intron |
| TTCAAGAAATTAACAGCCAA+TGG | 0.477497 | 1_1:-12440972 | Msa0008620:CDS |
| CTGGTGCACATGGTAGTTCT+TGG | 0.479918 | 1_1:-12443427 | Msa0008620:CDS |
| AAAGCCTCAGAAGCATATCT+AGG | 0.484079 | 1_1:-12440675 | Msa0008620:CDS |
| TTAACAGCATCCACTACATT+GGG | 0.484270 | 1_1:-12440996 | Msa0008620:CDS |
| CACACATCTTGGTTTAGTCT+AGG | 0.490104 | 1_1:+12440591 | None:intergenic |
| TTGTCATGCAGAGGAATTGT+TGG | 0.491880 | 1_1:-12441048 | Msa0008620:intron |
| AGCCACATTGGGCTAAGAAT+AGG | 0.494478 | 1_1:-12440527 | Msa0008620:CDS |
| TATCCTGTAATTGGCTATCA+AGG | 0.495775 | 1_1:-12440918 | Msa0008620:CDS |
| AAAGGGTATTATTGTAGTCA+TGG | 0.500442 | 1_1:-12440303 | Msa0008620:CDS |
| TGTTTATAGATACGATTTCA+GGG | 0.502251 | 1_1:-12441604 | Msa0008620:CDS |
| GGGTTTGGTCCTATGAATAG+TGG | 0.508529 | 1_1:+12443881 | None:intergenic |
| GGTAGTTCTTGGTGGGGCAA+AGG | 0.509312 | 1_1:-12443416 | Msa0008620:CDS |
| CTTAACAGCATCCACTACAT+TGG | 0.511042 | 1_1:-12440997 | Msa0008620:CDS |
| AGTTCTTGGTGGGGCAAAGG+TGG | 0.513089 | 1_1:-12443413 | Msa0008620:CDS |
| GATCCACAAAATGTGTTCTC+TGG | 0.515327 | 1_1:-12440432 | Msa0008620:CDS |
| TTACTACCTATTGGATGTGG+TGG | 0.517825 | 1_1:-12443928 | Msa0008620:CDS |
| GTATGGTGCTAAGCCACATT+GGG | 0.518685 | 1_1:-12440538 | Msa0008620:CDS |
| TTCAAAACTCATACGGCACA+TGG | 0.531422 | 1_1:-12443799 | Msa0008620:CDS |
| TTTCTTGAATCCCAATGTAG+TGG | 0.532470 | 1_1:+12440986 | None:intergenic |
| AAAACACAGGAAACACGAAC+GGG | 0.534038 | 1_1:-12441025 | Msa0008620:CDS |
| TTCCTAGTTCTGAATTTGAA+GGG | 0.538491 | 1_1:-12443352 | Msa0008620:CDS |
| GTGGCTGCACCTTATTGGGA+AGG | 0.543644 | 1_1:-12443476 | Msa0008620:CDS |
| ATTGTTTGGTTGCATTGGAT+GGG | 0.545187 | 1_1:+12443830 | None:intergenic |
| AGTATGGTGCTAAGCCACAT+TGG | 0.547690 | 1_1:-12440539 | Msa0008620:CDS |
| GAATAGACACATCATGTGCA+TGG | 0.549476 | 1_1:-12440857 | Msa0008620:CDS |
| AAAATGTGTTCTCTGGTGAT+TGG | 0.551456 | 1_1:-12440425 | Msa0008620:CDS |
| AACAATGGCCTAATCTTCAC+CGG | 0.551964 | 1_1:-12440942 | Msa0008620:CDS |
| TACCCTTCAAATTCAGAACT+AGG | 0.559721 | 1_1:+12443350 | None:intergenic |
| ACATAACTTGGTATCCATCA+AGG | 0.570790 | 1_1:-12441635 | Msa0008620:CDS |
| TAGTCATGGACTTGTCTACA+AGG | 0.572831 | 1_1:-12440289 | Msa0008620:CDS |
| TGCACCCTTCAAAACTCATA+CGG | 0.572982 | 1_1:-12443806 | Msa0008620:CDS |
| TGAAGTTATCACTTGAGCAT+AGG | 0.581177 | 1_1:-12441746 | Msa0008620:CDS |
| GCACATGGTAGTTCTTGGTG+GGG | 0.581419 | 1_1:-12443422 | Msa0008620:CDS |
| TTGTCCTAGATATGCTTCTG+AGG | 0.582676 | 1_1:+12440671 | None:intergenic |
| ATAGCCAATTACAGGATAGC+CGG | 0.586542 | 1_1:+12440923 | None:intergenic |
| TGATAAAGGCAACATTGATA+GGG | 0.586753 | 1_1:+12440112 | None:intergenic |
| GAGATTGTGGAGTTATGCTA+TGG | 0.590139 | 1_1:+12443852 | None:intergenic |
| TTTGATGGCTGTGCTTTGGA+AGG | 0.590529 | 1_1:-12440366 | Msa0008620:CDS |
| TAGACTAAACCAAGATGTGT+GGG | 0.597289 | 1_1:-12440589 | Msa0008620:CDS |
| AATAGACACATCATGTGCAT+GGG | 0.601730 | 1_1:-12440856 | Msa0008620:CDS |
| GCCAATGGTTTGAAGAACAA+TGG | 0.605151 | 1_1:-12440957 | Msa0008620:CDS |
| GTTATTAGTACTGGTGCACA+TGG | 0.614209 | 1_1:-12443437 | Msa0008620:CDS |
| GAAAACACAGGAAACACGAA+CGG | 0.615833 | 1_1:-12441026 | Msa0008620:CDS |
| CCATCACCAGAGGCATCTAA+GGG | 0.617174 | 1_1:+12441579 | None:intergenic |
| TTCCTATTCTTAGCCCAATG+TGG | 0.624843 | 1_1:+12440525 | None:intergenic |
| CTAGACTAAACCAAGATGTG+TGG | 0.630678 | 1_1:-12440590 | Msa0008620:CDS |
| AAAGGCAACATTGATAGGGA+CGG | 0.630900 | 1_1:+12440116 | None:intergenic |
| TCTAGGACAATCAGAAGACT+CGG | 0.645708 | 1_1:-12440658 | Msa0008620:CDS |
| GAGGAATTGTTGGAAAACAC+AGG | 0.649690 | 1_1:-12441038 | Msa0008620:CDS |
| ACTAAACCAAGATGTGTGGG+AGG | 0.655927 | 1_1:-12440586 | Msa0008620:CDS |
| AATATATATGAAACAAATGG+AGG | 0.660802 | 1_1:+12440058 | None:intergenic |
| ATCATAGACTCCATCACCAG+AGG | 0.673916 | 1_1:+12441569 | None:intergenic |
| CATAACATTCAATTTCACTG+AGG | 0.730952 | 1_1:-12441712 | Msa0008620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTACAGTTTTAAA+TGG | + | chr1_1:12440851-12440870 | None:intergenic | 10.0% |
| !! | ATAATTCTTGATATCATTAT+AGG | + | chr1_1:12440879-12440898 | None:intergenic | 15.0% |
| !! | ATAACCAATTAAAGATAATA+AGG | - | chr1_1:12442566-12442585 | Msa0008620:intron | 15.0% |
| !! | AAAACCTTATTATCTTTAAT+TGG | + | chr1_1:12442573-12442592 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAAACTTCGAAAA+GGG | - | chr1_1:12442651-12442670 | Msa0008620:intron | 15.0% |
| !!! | TTTTTGGTATTTTGAAAAAT+CGG | + | chr1_1:12442847-12442866 | None:intergenic | 15.0% |
| !! | TCAATAAAAAGATTAAAGTT+AGG | + | chr1_1:12443526-12443545 | None:intergenic | 15.0% |
| !!! | AATTTTGAAAGTTCTCTTAA+AGG | + | chr1_1:12440789-12440808 | None:intergenic | 20.0% |
| !! | ATTGGATATTGTTCAAATAT+CGG | - | chr1_1:12441458-12441477 | Msa0008620:intron | 20.0% |
| !! | TTTAAGAGAGTTTATTATTG+AGG | - | chr1_1:12441733-12441752 | Msa0008620:CDS | 20.0% |
| !! | TTAAGAGAGTTTATTATTGA+GGG | - | chr1_1:12441734-12441753 | Msa0008620:CDS | 20.0% |
| !! | ATGTAATTACTGTAATTAAG+AGG | + | chr1_1:12442067-12442086 | None:intergenic | 20.0% |
| !! | TATTTGTAAAGTAACTTCTT+CGG | + | chr1_1:12442123-12442142 | None:intergenic | 20.0% |
| !! | ATTGTTAAATTAATGATGTC+AGG | - | chr1_1:12442225-12442244 | Msa0008620:intron | 20.0% |
| !! | ATTATTGTCATGTTATTCTT+AGG | - | chr1_1:12442538-12442557 | Msa0008620:intron | 20.0% |
| !!! | TTCGAAGTTTTTTAAAAAGT+TGG | + | chr1_1:12442649-12442668 | None:intergenic | 20.0% |
| !!! | CTTTTTAAAAAACTTCGAAA+AGG | - | chr1_1:12442650-12442669 | Msa0008620:intron | 20.0% |
| !!! | ATTTGACTTTATAACTTCAA+GGG | + | chr1_1:12442744-12442763 | None:intergenic | 20.0% |
| !!! | AATTTGACTTTATAACTTCA+AGG | + | chr1_1:12442745-12442764 | None:intergenic | 20.0% |
| !! | CAATAAATAAACTAAAGACA+AGG | - | chr1_1:12442796-12442815 | Msa0008620:intron | 20.0% |
| !!! | ATAAATCCACAAAATTTTTG+TGG | - | chr1_1:12443259-12443278 | Msa0008620:intron | 20.0% |
| !! | TATTGAAGCTAAAAAACAAA+TGG | - | chr1_1:12443540-12443559 | Msa0008620:CDS | 20.0% |
| !! | ATTATTCATTGAAGTGAATA+AGG | + | chr1_1:12443769-12443788 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTAAGAAATGAAG+AGG | - | chr1_1:12443847-12443866 | Msa0008620:CDS | 20.0% |
| !! | TGAGAATTTTGTGACAATTT+TGG | + | chr1_1:12440321-12440340 | None:intergenic | 25.0% |
| !!! | CATGATTATTGTTTTGTTGT+GGG | + | chr1_1:12440367-12440386 | None:intergenic | 25.0% |
| ! | ATTGATGAAGTTGAGAAAAA+TGG | - | chr1_1:12440485-12440504 | Msa0008620:CDS | 25.0% |
| !! | TGAGAAAAATGGATTTAGTT+TGG | - | chr1_1:12440496-12440515 | Msa0008620:CDS | 25.0% |
| ! | GAATTGAAAATTGTATACCT+TGG | + | chr1_1:12440750-12440769 | None:intergenic | 25.0% |
| !! | CCTAAAAAATCAGTTTGTTT+CGG | + | chr1_1:12441108-12441127 | None:intergenic | 25.0% |
| !!! | CGAAACAAACTGATTTTTTA+GGG | - | chr1_1:12441106-12441125 | Msa0008620:intron | 25.0% |
| !!! | GAAACAAACTGATTTTTTAG+GGG | - | chr1_1:12441107-12441126 | Msa0008620:intron | 25.0% |
| ! | GGATTGATAAAGTTTACATA+TGG | + | chr1_1:12441670-12441689 | None:intergenic | 25.0% |
| ! | AGAAAAATTGGTAAATTGGT+TGG | + | chr1_1:12441808-12441827 | None:intergenic | 25.0% |
| ! | CAACAGAAAAATTGGTAAAT+TGG | + | chr1_1:12441812-12441831 | None:intergenic | 25.0% |
| ! | AAGATAAGCAACAGAAAAAT+TGG | + | chr1_1:12441820-12441839 | None:intergenic | 25.0% |
| ! | GTAATTACATAGTACTATGT+AGG | - | chr1_1:12442077-12442096 | Msa0008620:intron | 25.0% |
| ! | TGTTTATAGATACGATTTCA+GGG | - | chr1_1:12442390-12442409 | Msa0008620:intron | 25.0% |
| !!! | AGATAATAAGGTTTTGTTAC+TGG | - | chr1_1:12442578-12442597 | Msa0008620:intron | 25.0% |
| ! | TTGGTTATTACTTACTAAGA+AGG | + | chr1_1:12442630-12442649 | None:intergenic | 25.0% |
| !! | GATCATTTTACAATTGTCTT+CGG | - | chr1_1:12442701-12442720 | Msa0008620:intron | 25.0% |
| ! | CAACGTTGAAGTTATATTAT+AGG | + | chr1_1:12442929-12442948 | None:intergenic | 25.0% |
| !! | AAGAACAATCCTTTTATTCT+TGG | + | chr1_1:12443166-12443185 | None:intergenic | 25.0% |
| ! | GAGTTATGCTATGGATTAAA+GGG | + | chr1_1:12440136-12440155 | None:intergenic | 30.0% |
| !! | TGAGAGCATAACAATTTTTG+CGG | + | chr1_1:12440226-12440245 | None:intergenic | 30.0% |
| !!! | AAGGTTGTTTTGAACAACAT+AGG | + | chr1_1:12440294-12440313 | None:intergenic | 30.0% |
| !! | GCATGATTATTGTTTTGTTG+TGG | + | chr1_1:12440368-12440387 | None:intergenic | 30.0% |
| !! | GAAAAATGGATTTAGTTTGG+TGG | - | chr1_1:12440499-12440518 | Msa0008620:CDS | 30.0% |
| ! | TGCTTTTCATGATCATGTTT+TGG | - | chr1_1:12440604-12440623 | Msa0008620:CDS | 30.0% |
| ! | GCTTTTCATGATCATGTTTT+GGG | - | chr1_1:12440605-12440624 | Msa0008620:CDS | 30.0% |
| !! | TTCCTAGTTCTGAATTTGAA+GGG | - | chr1_1:12440642-12440661 | Msa0008620:CDS | 30.0% |
| AAAATTGTATACCTTGGAGA+TGG | + | chr1_1:12440744-12440763 | None:intergenic | 30.0% | |
| TGAAAGTTCTCTTAAAGGAA+TGG | + | chr1_1:12440784-12440803 | None:intergenic | 30.0% | |
| ! | CAGAAAGACTCAAAAAGTAT+GGG | + | chr1_1:12440952-12440971 | None:intergenic | 30.0% |
| GGTGGTAATTATTTCAGAAT+AGG | + | chr1_1:12441087-12441106 | None:intergenic | 30.0% | |
| ! | AAAAAATCAGTTTGTTTCGG+TGG | + | chr1_1:12441105-12441124 | None:intergenic | 30.0% |
| !!! | CCGAAACAAACTGATTTTTT+AGG | - | chr1_1:12441105-12441124 | Msa0008620:intron | 30.0% |
| !!! | TAGAATTTTTTACAGCAGCT+CGG | + | chr1_1:12441153-12441172 | None:intergenic | 30.0% |
| TTATTGCAAGACCTATAGTT+TGG | + | chr1_1:12441491-12441510 | None:intergenic | 30.0% | |
| TAGGTCTTGCAATAATAATG+TGG | - | chr1_1:12441496-12441515 | Msa0008620:intron | 30.0% | |
| AAAAAATGCTCTGATTGGAA+GGG | + | chr1_1:12441636-12441655 | None:intergenic | 30.0% | |
| ACATGCATTTAATGATCTCT+TGG | + | chr1_1:12441765-12441784 | None:intergenic | 30.0% | |
| TCAATCCATTTCCTTCAAAA+TGG | + | chr1_1:12441857-12441876 | None:intergenic | 30.0% | |
| ! | ATTAATCGACTTCTTGAAGA+CGG | + | chr1_1:12442021-12442040 | None:intergenic | 30.0% |
| ! | TAATTTTTCACCTCTTAGTG+AGG | - | chr1_1:12442163-12442182 | Msa0008620:intron | 30.0% |
| ! | AATTTTTCACCTCTTAGTGA+GGG | - | chr1_1:12442164-12442183 | Msa0008620:intron | 30.0% |
| CATAACATTCAATTTCACTG+AGG | - | chr1_1:12442282-12442301 | Msa0008620:intron | 30.0% | |
| ! | TGCAAAAAAGTATGAGTTTG+CGG | - | chr1_1:12442336-12442355 | Msa0008620:intron | 30.0% |
| CTGTTTATAGATACGATTTC+AGG | - | chr1_1:12442389-12442408 | Msa0008620:intron | 30.0% | |
| ATTTCAAGCCAATGAAATAC+TGG | - | chr1_1:12442456-12442475 | Msa0008620:intron | 30.0% | |
| ! | ATTTTACAATTGTCTTCGGA+GGG | - | chr1_1:12442705-12442724 | Msa0008620:intron | 30.0% |
| ATTGTTACTCCATAAGATCT+CGG | + | chr1_1:12442780-12442799 | None:intergenic | 30.0% | |
| TTCAAGAAATTAACAGCCAA+TGG | - | chr1_1:12443022-12443041 | Msa0008620:intron | 30.0% | |
| CAAGGAAAAATTCAAACTTC+AGG | - | chr1_1:12443094-12443113 | Msa0008620:intron | 30.0% | |
| ! | ATTTTCCCTGCTTCAAAATT+TGG | - | chr1_1:12443202-12443221 | Msa0008620:intron | 30.0% |
| !!! | AATCTCCAAATTTTGAAGCA+GGG | + | chr1_1:12443210-12443229 | None:intergenic | 30.0% |
| !!! | AAATCTCCAAATTTTGAAGC+AGG | + | chr1_1:12443211-12443230 | None:intergenic | 30.0% |
| ! | TCTATGCCACAAAAATTTTG+TGG | + | chr1_1:12443268-12443287 | None:intergenic | 30.0% |
| !!! | CAGATTGCATTTTTCAAGTA+TGG | - | chr1_1:12443439-12443458 | Msa0008620:CDS | 30.0% |
| CAGGAATTGGTAAAATTTGA+TGG | - | chr1_1:12443613-12443632 | Msa0008620:CDS | 30.0% | |
| ! | CTACAATAATACCCTTTTTG+AGG | + | chr1_1:12443688-12443707 | None:intergenic | 30.0% |
| !! | AAAGGGTATTATTGTAGTCA+TGG | - | chr1_1:12443691-12443710 | Msa0008620:CDS | 30.0% |
| TGATAAAGGCAACATTGATA+GGG | + | chr1_1:12443885-12443904 | None:intergenic | 30.0% | |
| ! | CTTTTACTACCTATTGGATG+TGG | - | chr1_1:12440063-12440082 | Msa0008620:three_prime_UTR | 35.0% |
| TAAAATCCACCACATCCAAT+AGG | + | chr1_1:12440075-12440094 | None:intergenic | 35.0% | |
| CACATACTTCCACTATTCAT+AGG | - | chr1_1:12440104-12440123 | Msa0008620:three_prime_UTR | 35.0% | |
| ! | ATGCTATGGATTAAAGGGTT+TGG | + | chr1_1:12440131-12440150 | None:intergenic | 35.0% |
| ! | GGAGTTATGCTATGGATTAA+AGG | + | chr1_1:12440137-12440156 | None:intergenic | 35.0% |
| ATTGTTTGGTTGCATTGGAT+GGG | + | chr1_1:12440167-12440186 | None:intergenic | 35.0% | |
| GAAGTTGTTCTTCTGTTGTT+GGG | + | chr1_1:12440259-12440278 | None:intergenic | 35.0% | |
| !!! | TTGTGACAATTTTGGCTGTA+AGG | + | chr1_1:12440313-12440332 | None:intergenic | 35.0% |
| ! | TTGACTGTAACAGTTGATTC+AGG | - | chr1_1:12440443-12440462 | Msa0008620:CDS | 35.0% |
| ATTGTAACACCTTCCCAATA+AGG | + | chr1_1:12440530-12440549 | None:intergenic | 35.0% | |
| !! | TATTGGGAAGGTGTTACAAT+TGG | - | chr1_1:12440530-12440549 | Msa0008620:CDS | 35.0% |
| !! | ATTGGAGGTGTTATTAGTAC+TGG | - | chr1_1:12440548-12440567 | Msa0008620:CDS | 35.0% |
| !! | GTTCCTAGTTCTGAATTTGA+AGG | - | chr1_1:12440641-12440660 | Msa0008620:CDS | 35.0% |
| TACCCTTCAAATTCAGAACT+AGG | + | chr1_1:12440647-12440666 | None:intergenic | 35.0% | |
| TGATTCCAACCTCAAAACTT+TGG | + | chr1_1:12440672-12440691 | None:intergenic | 35.0% | |
| ACTTGTGCAGCATTAAACAA+AGG | + | chr1_1:12440701-12440720 | None:intergenic | 35.0% | |
| ! | ACAAGTTTCTCTTGGAGTTT+TGG | - | chr1_1:12440715-12440734 | Msa0008620:CDS | 35.0% |
| ! | CAAGTTTCTCTTGGAGTTTT+GGG | - | chr1_1:12440716-12440735 | Msa0008620:CDS | 35.0% |
| GCAGAAAGACTCAAAAAGTA+TGG | + | chr1_1:12440953-12440972 | None:intergenic | 35.0% | |
| ! | GATAGTGTCTTTTGCTTTGA+CGG | + | chr1_1:12441008-12441027 | None:intergenic | 35.0% |
| AAGCAAAAGACACTATCGTT+TGG | - | chr1_1:12441011-12441030 | Msa0008620:CDS | 35.0% | |
| TTCCAATTCGGGTAGAATTA+TGG | + | chr1_1:12441063-12441082 | None:intergenic | 35.0% | |
| TTCAGAATAGGCTTCCAATT+CGG | + | chr1_1:12441075-12441094 | None:intergenic | 35.0% | |
| CTGAGATTCTGAGTTATACT+AGG | + | chr1_1:12441315-12441334 | None:intergenic | 35.0% | |
| GAGACTATACTGTAAAGGAT+TGG | - | chr1_1:12441440-12441459 | Msa0008620:intron | 35.0% | |
| GAAAAAATGCTCTGATTGGA+AGG | + | chr1_1:12441637-12441656 | None:intergenic | 35.0% | |
| !!! | TCCAATCAGAGCATTTTTTC+TGG | - | chr1_1:12441637-12441656 | Msa0008620:CDS | 35.0% |
| TCCAGAAAAAATGCTCTGAT+TGG | + | chr1_1:12441641-12441660 | None:intergenic | 35.0% | |
| !!! | AGAGCATTTTTTCTGGAACT+GGG | - | chr1_1:12441644-12441663 | Msa0008620:CDS | 35.0% |
| !! | TTTTGGGTGACAATGCAATT+TGG | + | chr1_1:12441696-12441715 | None:intergenic | 35.0% |
| ! | CATTGTCAACACCATTTTGA+AGG | - | chr1_1:12441843-12441862 | Msa0008620:intron | 35.0% |
| !! | CAACACCATTTTGAAGGAAA+TGG | - | chr1_1:12441849-12441868 | Msa0008620:intron | 35.0% |
| !! | AAATGGATTGACTACCTTTG+TGG | - | chr1_1:12441866-12441885 | Msa0008620:intron | 35.0% |
| CCAAAGAATACACTAAACTG+CGG | + | chr1_1:12441903-12441922 | None:intergenic | 35.0% | |
| TGAAGTTATCACTTGAGCAT+AGG | - | chr1_1:12442248-12442267 | Msa0008620:intron | 35.0% | |
| ACATAACTTGGTATCCATCA+AGG | - | chr1_1:12442359-12442378 | Msa0008620:intron | 35.0% | |
| GATGGAGTCTATGATTTCAT+TGG | - | chr1_1:12442433-12442452 | Msa0008620:intron | 35.0% | |
| ! | CATTTTACAATTGTCTTCGG+AGG | - | chr1_1:12442704-12442723 | Msa0008620:intron | 35.0% |
| TGACTTTATAACTTCAAGGG+AGG | + | chr1_1:12442741-12442760 | None:intergenic | 35.0% | |
| TAAATTGCAGATGTGCAGTT+AGG | + | chr1_1:12442876-12442895 | None:intergenic | 35.0% | |
| TTAACAGCATCCACTACATT+GGG | - | chr1_1:12442998-12443017 | Msa0008620:intron | 35.0% | |
| TTTCTTGAATCCCAATGTAG+TGG | + | chr1_1:12443011-12443030 | None:intergenic | 35.0% | |
| TATCCTGTAATTGGCTATCA+AGG | - | chr1_1:12443076-12443095 | Msa0008620:intron | 35.0% | |
| ! | TTTCCTTGATAGCCAATTAC+AGG | + | chr1_1:12443082-12443101 | None:intergenic | 35.0% |
| AATAGACACATCATGTGCAT+GGG | - | chr1_1:12443138-12443157 | Msa0008620:intron | 35.0% | |
| TGTGGCATAGACATCTATAA+TGG | - | chr1_1:12443277-12443296 | Msa0008620:intron | 35.0% | |
| GGTTTAGTCTAGGAGTAAAT+TGG | + | chr1_1:12443396-12443415 | None:intergenic | 35.0% | |
| TAGACTAAACCAAGATGTGT+GGG | - | chr1_1:12443405-12443424 | Msa0008620:CDS | 35.0% | |
| AAAATGTGTTCTCTGGTGAT+TGG | - | chr1_1:12443569-12443588 | Msa0008620:CDS | 35.0% | |
| ! | TGGTCAGATGAGATTTTGTA+TGG | - | chr1_1:12443589-12443608 | Msa0008620:CDS | 35.0% |
| ! | GGTCAGATGAGATTTTGTAT+GGG | - | chr1_1:12443590-12443609 | Msa0008620:CDS | 35.0% |
| ! | AAAATTTGATGGCTGTGCTT+TGG | - | chr1_1:12443624-12443643 | Msa0008620:CDS | 35.0% |
| AGACATTGTAGTCCTCAAAA+AGG | - | chr1_1:12443673-12443692 | Msa0008620:CDS | 35.0% | |
| GACATTGTAGTCCTCAAAAA+GGG | - | chr1_1:12443674-12443693 | Msa0008620:CDS | 35.0% | |
| ACAAGGAAGCTAAAGTTTGT+AGG | - | chr1_1:12443722-12443741 | Msa0008620:CDS | 35.0% | |
| GTGATAAAGGCAACATTGAT+AGG | + | chr1_1:12443886-12443905 | None:intergenic | 35.0% | |
| ! | ACGTGATAAAGGTGTGATAA+AGG | + | chr1_1:12443899-12443918 | None:intergenic | 35.0% |
| TTACTACCTATTGGATGTGG+TGG | - | chr1_1:12440066-12440085 | Msa0008620:three_prime_UTR | 40.0% | |
| GAGATTGTGGAGTTATGCTA+TGG | + | chr1_1:12440145-12440164 | None:intergenic | 40.0% | |
| GATTGTTTGGTTGCATTGGA+TGG | + | chr1_1:12440168-12440187 | None:intergenic | 40.0% | |
| TGCAGATTGTTTGGTTGCAT+TGG | + | chr1_1:12440172-12440191 | None:intergenic | 40.0% | |
| ! | TTTGAAGGGTGCAGATTGTT+TGG | + | chr1_1:12440181-12440200 | None:intergenic | 40.0% |
| TGCACCCTTCAAAACTCATA+CGG | - | chr1_1:12440188-12440207 | Msa0008620:three_prime_UTR | 40.0% | |
| !!! | TGTGCCGTATGAGTTTTGAA+GGG | + | chr1_1:12440195-12440214 | None:intergenic | 40.0% |
| !! | ATGTGCCGTATGAGTTTTGA+AGG | + | chr1_1:12440196-12440215 | None:intergenic | 40.0% |
| TTCAAAACTCATACGGCACA+TGG | - | chr1_1:12440195-12440214 | Msa0008620:three_prime_UTR | 40.0% | |
| CGAAGTTGTTCTTCTGTTGT+TGG | + | chr1_1:12440260-12440279 | None:intergenic | 40.0% | |
| ! | GTTGTGGGCATGATAGTTTT+CGG | + | chr1_1:12440352-12440371 | None:intergenic | 40.0% |
| !! | GTTATTAGTACTGGTGCACA+TGG | - | chr1_1:12440557-12440576 | Msa0008620:CDS | 40.0% |
| !! | AAGGGTATGCCAAAGTTTTG+AGG | - | chr1_1:12440660-12440679 | Msa0008620:CDS | 40.0% |
| !!! | GTATGCCAAAGTTTTGAGGT+TGG | - | chr1_1:12440664-12440683 | Msa0008620:CDS | 40.0% |
| AATGCTGCACAAGTTTCTCT+TGG | - | chr1_1:12440707-12440726 | Msa0008620:CDS | 40.0% | |
| TATGGAGGTGAGGAGTTAAT+CGG | + | chr1_1:12441045-12441064 | None:intergenic | 40.0% | |
| CAATTCGGGTAGAATTATGG+AGG | + | chr1_1:12441060-12441079 | None:intergenic | 40.0% | |
| CTCCATAATTCTACCCGAAT+TGG | - | chr1_1:12441058-12441077 | Msa0008620:intron | 40.0% | |
| TCAGAATAGGCTTCCAATTC+GGG | + | chr1_1:12441074-12441093 | None:intergenic | 40.0% | |
| !! | GTTATACTAGGTGTTGACAG+AGG | + | chr1_1:12441303-12441322 | None:intergenic | 40.0% |
| ! | AATTTTGTCCAGTGAGGAAG+AGG | + | chr1_1:12441345-12441364 | None:intergenic | 40.0% |
| ATGCAGAAATTTACTGCAGC+TGG | + | chr1_1:12441401-12441420 | None:intergenic | 40.0% | |
| TACAGTATAGTCTCCGACAA+AGG | + | chr1_1:12441434-12441453 | None:intergenic | 40.0% | |
| TGTCGGAGACTATACTGTAA+AGG | - | chr1_1:12441435-12441454 | Msa0008620:intron | 40.0% | |
| ! | TCGGTTGCTTTCCAAACTAT+AGG | - | chr1_1:12441477-12441496 | Msa0008620:intron | 40.0% |
| AAAGCAGTCAGAAGAGTAGT+TGG | + | chr1_1:12441528-12441547 | None:intergenic | 40.0% | |
| CGTCGGAGGTAGAATAAAAT+TGG | + | chr1_1:12441557-12441576 | None:intergenic | 40.0% | |
| TATGGTCAGACTCAATTTGG+TGG | + | chr1_1:12441597-12441616 | None:intergenic | 40.0% | |
| GGTTATGGTCAGACTCAATT+TGG | + | chr1_1:12441600-12441619 | None:intergenic | 40.0% | |
| GGATGAATACGGTAAGGTTA+TGG | + | chr1_1:12441615-12441634 | None:intergenic | 40.0% | |
| CTGATTGGAAGGGATGAATA+CGG | + | chr1_1:12441626-12441645 | None:intergenic | 40.0% | |
| !!! | CAGAGCATTTTTTCTGGAAC+TGG | - | chr1_1:12441643-12441662 | Msa0008620:CDS | 40.0% |
| CCGCAGTTTAGTGTATTCTT+TGG | - | chr1_1:12441900-12441919 | Msa0008620:intron | 40.0% | |
| AACTTCTTCGGTACGTGTAA+AGG | + | chr1_1:12442111-12442130 | None:intergenic | 40.0% | |
| ATGAGTTTGCGGACATAACT+TGG | - | chr1_1:12442347-12442366 | Msa0008620:intron | 40.0% | |
| CTGAGAGACCAGTATTTCAT+TGG | + | chr1_1:12442467-12442486 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTGTTACTGGCTTG+TGG | - | chr1_1:12442585-12442604 | Msa0008620:intron | 40.0% |
| ! | GAAGGTACAATATGACAGTG+AGG | + | chr1_1:12442612-12442631 | None:intergenic | 40.0% |
| ! | TGCAGTTAGGTCGCAATTTT+TGG | + | chr1_1:12442863-12442882 | None:intergenic | 40.0% |
| TTGTCATGCAGAGGAATTGT+TGG | - | chr1_1:12442946-12442965 | Msa0008620:intron | 40.0% | |
| GAGGAATTGTTGGAAAACAC+AGG | - | chr1_1:12442956-12442975 | Msa0008620:intron | 40.0% | |
| GAAAACACAGGAAACACGAA+CGG | - | chr1_1:12442968-12442987 | Msa0008620:intron | 40.0% | |
| AAAACACAGGAAACACGAAC+GGG | - | chr1_1:12442969-12442988 | Msa0008620:intron | 40.0% | |
| CTTAACAGCATCCACTACAT+TGG | - | chr1_1:12442997-12443016 | Msa0008620:intron | 40.0% | |
| GCCAATGGTTTGAAGAACAA+TGG | - | chr1_1:12443037-12443056 | Msa0008620:intron | 40.0% | |
| GCCATTGTTCTTCAAACCAT+TGG | + | chr1_1:12443041-12443060 | None:intergenic | 40.0% | |
| AACAATGGCCTAATCTTCAC+CGG | - | chr1_1:12443052-12443071 | Msa0008620:intron | 40.0% | |
| ATAGCCAATTACAGGATAGC+CGG | + | chr1_1:12443074-12443093 | None:intergenic | 40.0% | |
| GAATAGACACATCATGTGCA+TGG | - | chr1_1:12443137-12443156 | Msa0008620:intron | 40.0% | |
| GCATGGGATCCAAGAATAAA+AGG | - | chr1_1:12443154-12443173 | Msa0008620:intron | 40.0% | |
| ! | AAAGCCTCAGAAGCATATCT+AGG | - | chr1_1:12443319-12443338 | Msa0008620:intron | 40.0% |
| TTGTCCTAGATATGCTTCTG+AGG | + | chr1_1:12443326-12443345 | None:intergenic | 40.0% | |
| ! | TCTAGGACAATCAGAAGACT+CGG | - | chr1_1:12443336-12443355 | Msa0008620:intron | 40.0% |
| CACACATCTTGGTTTAGTCT+AGG | + | chr1_1:12443406-12443425 | None:intergenic | 40.0% | |
| CTAGACTAAACCAAGATGTG+TGG | - | chr1_1:12443404-12443423 | Msa0008620:CDS | 40.0% | |
| TTCCTATTCTTAGCCCAATG+TGG | + | chr1_1:12443472-12443491 | None:intergenic | 40.0% | |
| GATCCACAAAATGTGTTCTC+TGG | - | chr1_1:12443562-12443581 | Msa0008620:CDS | 40.0% | |
| ! | TCACCAGAGAACACATTTTG+TGG | + | chr1_1:12443568-12443587 | None:intergenic | 40.0% |
| ! | AGATGAGATTTTGTATGGGC+AGG | - | chr1_1:12443594-12443613 | Msa0008620:CDS | 40.0% |
| ! | GATTTTGTATGGGCAGGAAT+TGG | - | chr1_1:12443600-12443619 | Msa0008620:CDS | 40.0% |
| TAGTCATGGACTTGTCTACA+AGG | - | chr1_1:12443705-12443724 | Msa0008620:CDS | 40.0% | |
| AAAGGCAACATTGATAGGGA+CGG | + | chr1_1:12443881-12443900 | None:intergenic | 40.0% | |
| AAAGCGAACACACGTGATAA+AGG | + | chr1_1:12443910-12443929 | None:intergenic | 40.0% | |
| ! | GGGTTTGGTCCTATGAATAG+TGG | + | chr1_1:12440116-12440135 | None:intergenic | 45.0% |
| TTGCATTGGATGGGAGATTG+TGG | + | chr1_1:12440158-12440177 | None:intergenic | 45.0% | |
| ! | TTTGGTGGCTGCACCTTATT+GGG | - | chr1_1:12440514-12440533 | Msa0008620:CDS | 45.0% |
| !! | TGGGAAGGTGTTACAATTGG+AGG | - | chr1_1:12440533-12440552 | Msa0008620:CDS | 45.0% |
| TGCACATGGTAGTTCTTGGT+GGG | - | chr1_1:12440571-12440590 | Msa0008620:CDS | 45.0% | |
| AGATGTGGTCAAGTAGCTTC+TGG | + | chr1_1:12441258-12441277 | None:intergenic | 45.0% | |
| ! | GTGCAGAATTTTGTCCAGTG+AGG | + | chr1_1:12441351-12441370 | None:intergenic | 45.0% |
| GTCAGAAGAGTAGTTGGAGA+TGG | + | chr1_1:12441522-12441541 | None:intergenic | 45.0% | |
| TGGAAGGGATGAATACGGTA+AGG | + | chr1_1:12441621-12441640 | None:intergenic | 45.0% | |
| GGTGACAATGCAATTTGGTC+AGG | + | chr1_1:12441691-12441710 | None:intergenic | 45.0% | |
| TGGATTGACTACCTTTGTGG+TGG | - | chr1_1:12441869-12441888 | Msa0008620:intron | 45.0% | |
| GGATTGACTACCTTTGTGGT+GGG | - | chr1_1:12441870-12441889 | Msa0008620:intron | 45.0% | |
| TGCTAACATCCCTCACTAAG+AGG | + | chr1_1:12442176-12442195 | None:intergenic | 45.0% | |
| TAAACAGCTGTGTGCCTTGA+TGG | + | chr1_1:12442376-12442395 | None:intergenic | 45.0% | |
| ATCATAGACTCCATCACCAG+AGG | + | chr1_1:12442428-12442447 | None:intergenic | 45.0% | |
| ACTACTGAGCCGAGATCTTA+TGG | - | chr1_1:12442768-12442787 | Msa0008620:intron | 45.0% | |
| ACTTCAACGTTGTCATGCAG+AGG | - | chr1_1:12442937-12442956 | Msa0008620:intron | 45.0% | |
| ! | TTCACCGGCTATCCTGTAAT+TGG | - | chr1_1:12443067-12443086 | Msa0008620:intron | 45.0% |
| ACTAAACCAAGATGTGTGGG+AGG | - | chr1_1:12443408-12443427 | Msa0008620:CDS | 45.0% | |
| ! | AGTATGGTGCTAAGCCACAT+TGG | - | chr1_1:12443455-12443474 | Msa0008620:CDS | 45.0% |
| ! | GTATGGTGCTAAGCCACATT+GGG | - | chr1_1:12443456-12443475 | Msa0008620:CDS | 45.0% |
| AGCCACATTGGGCTAAGAAT+AGG | - | chr1_1:12443467-12443486 | Msa0008620:CDS | 45.0% | |
| ! | TTTGATGGCTGTGCTTTGGA+AGG | - | chr1_1:12443628-12443647 | Msa0008620:CDS | 45.0% |
| !!! | TTTAAATTTTATAAAGTTTT+GGG | + | chr1_1:12441712-12441731 | None:intergenic | 5.0% |
| !!! | TTTTAAATTTTATAAAGTTT+TGG | + | chr1_1:12441713-12441732 | None:intergenic | 5.0% |
| ! | GTTTGGTGGCTGCACCTTAT+TGG | - | chr1_1:12440513-12440532 | Msa0008620:CDS | 50.0% |
| CTGGTGCACATGGTAGTTCT+TGG | - | chr1_1:12440567-12440586 | Msa0008620:CDS | 50.0% | |
| GTGCACATGGTAGTTCTTGG+TGG | - | chr1_1:12440570-12440589 | Msa0008620:CDS | 50.0% | |
| GCACATGGTAGTTCTTGGTG+GGG | - | chr1_1:12440572-12440591 | Msa0008620:CDS | 50.0% | |
| !!! | AGTTTTGGGTGCCATCTCCA+AGG | - | chr1_1:12440730-12440749 | Msa0008620:CDS | 50.0% |
| CGGGTAGAATTATGGAGGTG+AGG | + | chr1_1:12441055-12441074 | None:intergenic | 50.0% | |
| GGACGAAGGCAAAGGATTCT+CGG | + | chr1_1:12441237-12441256 | None:intergenic | 50.0% | |
| TAGCTTCTGGACGAAGGCAA+AGG | + | chr1_1:12441245-12441264 | None:intergenic | 50.0% | |
| GTCAAGTAGCTTCTGGACGA+AGG | + | chr1_1:12441251-12441270 | None:intergenic | 50.0% | |
| AGAGGTTCAGTTGCAGGAAG+GGG | + | chr1_1:12441285-12441304 | None:intergenic | 50.0% | |
| CAGAGGTTCAGTTGCAGGAA+GGG | + | chr1_1:12441286-12441305 | None:intergenic | 50.0% | |
| ACAGAGGTTCAGTTGCAGGA+AGG | + | chr1_1:12441287-12441306 | None:intergenic | 50.0% | |
| GTTGACAGAGGTTCAGTTGC+AGG | + | chr1_1:12441291-12441310 | None:intergenic | 50.0% | |
| GATTCACTCCTCTTCCTCAC+TGG | - | chr1_1:12441334-12441353 | Msa0008620:intron | 50.0% | |
| CAGCTGGTACACAGCAGAAA+TGG | + | chr1_1:12441385-12441404 | None:intergenic | 50.0% | |
| CATGAGTGATGCGCCTTTGT+CGG | - | chr1_1:12441418-12441437 | Msa0008620:intron | 50.0% | |
| !! | CAATTTGGTGGTGCTCCGAT+TGG | + | chr1_1:12441585-12441604 | None:intergenic | 50.0% |
| !! | CCATCACCAGAGGCATCTAA+GGG | + | chr1_1:12442418-12442437 | None:intergenic | 50.0% |
| !! | TCCATCACCAGAGGCATCTA+AGG | + | chr1_1:12442419-12442438 | None:intergenic | 50.0% |
| TCTCAGTCAGTTAGAGCAGC+AGG | - | chr1_1:12442481-12442500 | Msa0008620:intron | 50.0% | |
| CAGGATAGCCGGTGAAGATT+AGG | + | chr1_1:12443063-12443082 | None:intergenic | 50.0% | |
| CCAATTCCTCCCACACATCT+TGG | + | chr1_1:12443417-12443436 | None:intergenic | 50.0% | |
| CCAAGATGTGTGGGAGGAAT+TGG | - | chr1_1:12443414-12443433 | Msa0008620:CDS | 50.0% | |
| GTGGCTGCACCTTATTGGGA+AGG | - | chr1_1:12440518-12440537 | Msa0008620:CDS | 55.0% | |
| GGTAGTTCTTGGTGGGGCAA+AGG | - | chr1_1:12440578-12440597 | Msa0008620:CDS | 55.0% | |
| AGTTCTTGGTGGGGCAAAGG+TGG | - | chr1_1:12440581-12440600 | Msa0008620:CDS | 55.0% | |
| TACAGCAGCTCGGCGTTTGT+GGG | + | chr1_1:12441143-12441162 | None:intergenic | 55.0% | |
| TTACAGCAGCTCGGCGTTTG+TGG | + | chr1_1:12441144-12441163 | None:intergenic | 55.0% | |
| !! | AGCAGAAATGGCGCTGGTTC+TGG | + | chr1_1:12441373-12441392 | None:intergenic | 55.0% |
| GTACACAGCAGAAATGGCGC+TGG | + | chr1_1:12441379-12441398 | None:intergenic | 55.0% | |
| ! | TGGTGGTGCTCCGATTGGAA+GGG | + | chr1_1:12441580-12441599 | None:intergenic | 55.0% |
| !! | TTGGTGGTGCTCCGATTGGA+AGG | + | chr1_1:12441581-12441600 | None:intergenic | 55.0% |
| CGGTGACTTTCCCACCACAA+AGG | + | chr1_1:12441883-12441902 | None:intergenic | 55.0% | |
| AGGGTTCCCTTAGATGCCTC+TGG | - | chr1_1:12442409-12442428 | Msa0008620:intron | 55.0% | |
| CCCTTAGATGCCTCTGGTGA+TGG | - | chr1_1:12442415-12442434 | Msa0008620:intron | 55.0% | |
| GCAGGAAGGGGTGACAGATG+TGG | + | chr1_1:12441273-12441292 | None:intergenic | 60.0% | |
| ACCTCCGACGCCCTTCCAAT+CGG | - | chr1_1:12441567-12441586 | Msa0008620:CDS | 60.0% | |
| ! | TGCTCCGATTGGAAGGGCGT+CGG | + | chr1_1:12441574-12441593 | None:intergenic | 60.0% |
| !! | TCCGATTGGAAGGGCGTCGG+AGG | + | chr1_1:12441571-12441590 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 12440059 | 12443957 | 12440059 | ID=Msa0008620;Name=Msa0008620 |
| chr1_1 | mRNA | 12440059 | 12443957 | 12440059 | ID=Msa0008620-mRNA-1;Parent=Msa0008620;Name=Msa0008620-mRNA-1;_AED=0.06;_eAED=0.08;_QI=0|0.5|0.66|1|1|1|3|174|565 |
| chr1_1 | exon | 12440059 | 12441059 | 12440059 | ID=Msa0008620-mRNA-1:exon:4727;Parent=Msa0008620-mRNA-1 |
| chr1_1 | exon | 12441514 | 12441769 | 12441514 | ID=Msa0008620-mRNA-1:exon:4726;Parent=Msa0008620-mRNA-1 |
| chr1_1 | exon | 12443343 | 12443957 | 12443343 | ID=Msa0008620-mRNA-1:exon:4725;Parent=Msa0008620-mRNA-1 |
| chr1_1 | CDS | 12443343 | 12443957 | 12443343 | ID=Msa0008620-mRNA-1:cds;Parent=Msa0008620-mRNA-1 |
| chr1_1 | CDS | 12441514 | 12441769 | 12441514 | ID=Msa0008620-mRNA-1:cds;Parent=Msa0008620-mRNA-1 |
| chr1_1 | CDS | 12440233 | 12441059 | 12440233 | ID=Msa0008620-mRNA-1:cds;Parent=Msa0008620-mRNA-1 |
| chr1_1 | three_prime_UTR | 12440059 | 12440232 | 12440059 | ID=Msa0008620-mRNA-1:three_prime_utr;Parent=Msa0008620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
