Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103720 | XP_024628980.1 | 92.881 | 590 | 42 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103720 | sp|Q9LYD8|GGLO3_ARATH | 64.452 | 557 | 191 | 4 | 28 | 579 | 22 | 576 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103720 | A0A1S2Y2S8 | 80.067 | 597 | 107 | 2 | 4 | 591 | 5 | 598 | 0.0 | 992 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008620 | Msa0103720 | 0.874450 | 6.689365e-68 | -8.615850e-47 |
| Msa0008880 | Msa0103720 | 0.870300 | 1.619743e-66 | -8.615850e-47 |
| Msa0058850 | Msa0103720 | 0.833713 | 4.553578e-56 | -8.615850e-47 |
| Msa0058910 | Msa0103720 | 0.861507 | 9.773923e-64 | -8.615850e-47 |
| Msa0103720 | Msa0150100 | 0.887526 | 1.320633e-72 | -8.615850e-47 |
| Msa0103720 | Msa0150150 | 0.895234 | 1.163352e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103720 | MtrunA17_Chr1g0157561 | 93.333 | 360 | 24 | 0 | 231 | 590 | 19 | 378 | 0.0 | 706 |
| Msa0103720 | MtrunA17_Chr8g0346061 | 47.993 | 573 | 287 | 6 | 14 | 578 | 10 | 579 | 0.0 | 554 |
| Msa0103720 | MtrunA17_Chr5g0394031 | 48.925 | 558 | 273 | 7 | 30 | 579 | 30 | 583 | 1.51e-179 | 520 |
| Msa0103720 | MtrunA17_Chr1g0157571 | 91.810 | 232 | 19 | 0 | 1 | 232 | 1 | 232 | 2.50e-155 | 444 |
| Msa0103720 | MtrunA17_Chr1g0157541 | 91.852 | 135 | 11 | 0 | 366 | 500 | 1 | 135 | 1.32e-85 | 262 |
| Msa0103720 | MtrunA17_Chr1g0172001 | 91.026 | 78 | 7 | 0 | 404 | 481 | 11 | 88 | 2.14e-43 | 150 |
| Msa0103720 | MtrunA17_Chr7g0276181 | 47.794 | 136 | 69 | 1 | 446 | 579 | 16 | 151 | 3.20e-36 | 132 |
| Msa0103720 | MtrunA17_Chr8g0346031 | 43.262 | 141 | 53 | 2 | 163 | 302 | 12 | 126 | 7.13e-27 | 105 |
| Msa0103720 | MtrunA17_Chr7g0276161 | 40.678 | 118 | 68 | 1 | 30 | 145 | 27 | 144 | 5.80e-26 | 103 |
| Msa0103720 | MtrunA17_Chr1g0159391 | 82.143 | 56 | 9 | 1 | 510 | 564 | 10 | 65 | 1.02e-24 | 99.8 |
| Msa0103720 | MtrunA17_Chr8g0346041 | 60.784 | 51 | 20 | 0 | 454 | 504 | 6 | 56 | 1.56e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103720 | AT5G11540.1 | 64.452 | 557 | 191 | 4 | 28 | 579 | 22 | 576 | 0.0 | 748 |
| Msa0103720 | AT2G46740.1 | 46.004 | 563 | 291 | 7 | 27 | 578 | 25 | 585 | 0.0 | 526 |
| Msa0103720 | AT2G46750.1 | 46.359 | 563 | 289 | 7 | 27 | 578 | 21 | 581 | 4.71e-180 | 521 |
| Msa0103720 | AT2G46760.1 | 44.810 | 578 | 306 | 6 | 9 | 578 | 17 | 589 | 4.95e-180 | 522 |
| Msa0103720 | AT5G56490.1 | 45.293 | 563 | 297 | 7 | 30 | 583 | 17 | 577 | 8.60e-166 | 485 |
| Msa0103720 | AT1G32300.1 | 43.696 | 579 | 309 | 8 | 9 | 578 | 3 | 573 | 1.23e-165 | 485 |
| Msa0103720 | AT5G56470.1 | 48.954 | 239 | 117 | 3 | 345 | 578 | 9 | 247 | 1.73e-78 | 249 |
Find 115 sgRNAs with CRISPR-Local
Find 397 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTTTCTCTTGGAGTTT+TGG | 0.192601 | 1_3:-11095038 | Msa0103720:CDS |
| CTGTTTATAGATACGATTTC+AGG | 0.197781 | 1_3:-11091752 | Msa0103720:CDS |
| TTGTTGGGTATGTTACATTT+AGG | 0.199389 | 1_3:+11095512 | None:intergenic |
| GTTTGGTGGCTGCACCTTAT+TGG | 0.236643 | 1_3:-11095240 | Msa0103720:CDS |
| TTCACTAGCTATCCTGTAAT+TGG | 0.273834 | 1_3:-11090947 | Msa0103720:CDS |
| TCCATCACCAGAGGCATCTA+AGG | 0.274681 | 1_3:+11091725 | None:intergenic |
| CCAAGATGTGTGGGAGGAAT+TGG | 0.278330 | 1_3:-11090600 | Msa0103720:CDS |
| TGTTGGGTATGTTACATTTA+GGG | 0.279673 | 1_3:+11095513 | None:intergenic |
| ATTATTCATTGAAGTGAATA+AGG | 0.280510 | 1_3:+11090248 | None:intergenic |
| AGACATTGTAGTCCTCAAAA+AGG | 0.283988 | 1_3:-11090341 | Msa0103720:CDS |
| TGTTGTGGGCATGATAGTTT+TGG | 0.285024 | 1_3:+11095403 | None:intergenic |
| TTTGGTGGCTGCACCTTATT+GGG | 0.293408 | 1_3:-11095239 | Msa0103720:CDS |
| GGAGTTATGCTATGGATTAA+AGG | 0.297527 | 1_3:+11095619 | None:intergenic |
| TTTCCTTGATAGCCAATTAC+AGG | 0.297690 | 1_3:+11090935 | None:intergenic |
| TAAACAGCTGTGTGCCTTGA+TGG | 0.304478 | 1_3:+11091768 | None:intergenic |
| GCATGGGATCCAAGAATAAA+AGG | 0.315226 | 1_3:-11090860 | Msa0103720:CDS |
| TTGACTGTAACAGTTGATTC+AGG | 0.326698 | 1_3:-11095310 | Msa0103720:CDS |
| TGTGGCATAGACATCTATAA+TGG | 0.334215 | 1_3:-11090737 | Msa0103720:CDS |
| GGTTTAGTCTAGGAGTAAAT+TGG | 0.363582 | 1_3:+11090621 | None:intergenic |
| CGAAGTTGTTCTTCTGTTGT+TGG | 0.372174 | 1_3:+11095496 | None:intergenic |
| CTGAGAGACCAGTATTTCAT+TGG | 0.374536 | 1_3:+11091677 | None:intergenic |
| CCAATTCCTCCCACACATCT+TGG | 0.377015 | 1_3:+11090600 | None:intergenic |
| GAGTTATGCTATGGATTAAA+GGG | 0.379012 | 1_3:+11095620 | None:intergenic |
| AAAGCGAACACACGTGATAA+AGG | 0.384174 | 1_3:+11090107 | None:intergenic |
| TTTGAAGGGTGCAGATTGTT+TGG | 0.385906 | 1_3:+11095575 | None:intergenic |
| GATGGAGTCTATGATTTCAT+TGG | 0.393398 | 1_3:-11091708 | Msa0103720:CDS |
| GATTGTTTGGTTGCATTGGA+TGG | 0.395081 | 1_3:+11095588 | None:intergenic |
| CACATACTTCCACTATTCAT+AGG | 0.396512 | 1_3:-11095649 | Msa0103720:CDS |
| ATTTCAAGCCAATGAAATAC+TGG | 0.405185 | 1_3:-11091685 | Msa0103720:CDS |
| ACGTGATAAAGGTGTGATAA+AGG | 0.406426 | 1_3:+11090118 | None:intergenic |
| CAGGATAGCTAGTGAAGATT+AGG | 0.409307 | 1_3:+11090954 | None:intergenic |
| TATTGGGAAGGTGTTACAAT+TGG | 0.410864 | 1_3:-11095223 | Msa0103720:CDS |
| TGCAGATTGTTTGGTTGCAT+TGG | 0.412058 | 1_3:+11095584 | None:intergenic |
| TGGGAAGGTGTTACAATTGG+AGG | 0.412609 | 1_3:-11095220 | Msa0103720:CDS |
| AGGGTTCCCTTAGATGCCTC+TGG | 0.413308 | 1_3:-11091732 | Msa0103720:CDS |
| ATGCTATGGATTAAAGGGTT+TGG | 0.417400 | 1_3:+11095625 | None:intergenic |
| ATTGTAACACCTTCCCAATA+AGG | 0.428496 | 1_3:+11095226 | None:intergenic |
| AAGGAATTGGTAAAATTTGA+TGG | 0.430551 | 1_3:-11090401 | Msa0103720:CDS |
| TTCAAGAAATTAACAGCCAT+TGG | 0.435580 | 1_3:-11090992 | Msa0103720:CDS |
| CCCTTAGATGCCTCTGGTGA+TGG | 0.436882 | 1_3:-11091726 | Msa0103720:CDS |
| ACAAGGAAGCTAAAGTTTGT+AGG | 0.446243 | 1_3:-11090292 | Msa0103720:CDS |
| AATGCTGCACAAGTTTCTCT+TGG | 0.447796 | 1_3:-11095046 | Msa0103720:CDS |
| TTGTCATGCAGAGGAATTGC+TGG | 0.454579 | 1_3:-11091068 | Msa0103720:intron |
| ATGAGTTTGCGGACATAACT+TGG | 0.456119 | 1_3:-11091794 | Msa0103720:CDS |
| ATTGGAGGTGTTATTAGTAC+TGG | 0.462333 | 1_3:-11095205 | Msa0103720:CDS |
| TGCACATGGTAGTTCTTGGT+GGG | 0.463800 | 1_3:-11095182 | Msa0103720:CDS |
| TATCCTGTAATTGGCTATCA+AGG | 0.465109 | 1_3:-11090938 | Msa0103720:CDS |
| TTGCATTGGATGGGAGATTG+TGG | 0.467626 | 1_3:+11095598 | None:intergenic |
| GTGCACATGGTAGTTCTTGG+TGG | 0.467984 | 1_3:-11095183 | Msa0103720:CDS |
| GAAGTTGTTCTTCTGTTGTT+GGG | 0.468307 | 1_3:+11095497 | None:intergenic |
| TAAAATCCACCACATCCAAT+AGG | 0.468753 | 1_3:+11095681 | None:intergenic |
| AAAATTTGATGGCTGTGCTT+TGG | 0.471057 | 1_3:-11090390 | Msa0103720:CDS |
| TCTCAGTCAGTTAGAGCAGC+AGG | 0.472911 | 1_3:-11091660 | Msa0103720:intron |
| CTGGTGCACATGGTAGTTCT+TGG | 0.479918 | 1_3:-11095186 | Msa0103720:CDS |
| TGATTCCAACCTCAAAACTT+TGG | 0.483399 | 1_3:+11095084 | None:intergenic |
| AAAGCCTCAGAAGCATATCT+AGG | 0.484079 | 1_3:-11090695 | Msa0103720:CDS |
| TTAACAGCATCCACTACATT+GGG | 0.484270 | 1_3:-11091016 | Msa0103720:CDS |
| GCCATTGTTCTTCAAACCAA+TGG | 0.485787 | 1_3:+11090976 | None:intergenic |
| CACACATCTTGGTTTAGTCT+AGG | 0.490104 | 1_3:+11090611 | None:intergenic |
| TAGTAGATATATGAAACAAA+TGG | 0.491909 | 1_3:+11090075 | None:intergenic |
| AGCCACATTGGGCTAAGAAT+AGG | 0.494478 | 1_3:-11090547 | Msa0103720:CDS |
| AAAACACAGGAAACACGAAC+GGG | 0.494628 | 1_3:-11091045 | Msa0103720:CDS |
| AAAGGGTATTATTGTAGTCA+TGG | 0.500442 | 1_3:-11090323 | Msa0103720:CDS |
| TGTTTATAGATACGATTTCA+GGG | 0.502251 | 1_3:-11091751 | Msa0103720:CDS |
| GGGTTTGGTCCTATGAATAG+TGG | 0.508529 | 1_3:+11095640 | None:intergenic |
| GGTAGTTCTTGGTGGGGCAA+AGG | 0.509312 | 1_3:-11095175 | Msa0103720:CDS |
| CTTAACAGCATCCACTACAT+TGG | 0.511042 | 1_3:-11091017 | Msa0103720:CDS |
| AGTTCTTGGTGGGGCAAAGG+TGG | 0.513089 | 1_3:-11095172 | Msa0103720:CDS |
| TTACTACCTATTGGATGTGG+TGG | 0.517825 | 1_3:-11095687 | Msa0103720:CDS |
| GTATGGTGCTAAGCCACATT+GGG | 0.518685 | 1_3:-11090558 | Msa0103720:CDS |
| GAAAGGGTATTGAAATGAAA+GGG | 0.525672 | 1_3:+11095735 | None:intergenic |
| TTCAAAACTCGTACGGCACA+TGG | 0.525730 | 1_3:-11095558 | Msa0103720:CDS |
| TTTCTTGAATCCCAATGTAG+TGG | 0.532470 | 1_3:+11091006 | None:intergenic |
| GTGGCTGCACCTTATTGGGA+AGG | 0.543644 | 1_3:-11095235 | Msa0103720:CDS |
| ATTGTTTGGTTGCATTGGAT+GGG | 0.545187 | 1_3:+11095589 | None:intergenic |
| GATCCACAAGATGTGTTCTC+TGG | 0.545238 | 1_3:-11090452 | Msa0103720:CDS |
| AGTATGGTGCTAAGCCACAT+TGG | 0.547690 | 1_3:-11090559 | Msa0103720:CDS |
| GAATAGACACATCATGTGCA+TGG | 0.549476 | 1_3:-11090877 | Msa0103720:CDS |
| AAAATTGTATACCTTGGAGA+TGG | 0.550760 | 1_3:+11095012 | None:intergenic |
| GTTCCTAGTTCTGAATCTGA+AGG | 0.558107 | 1_3:-11095112 | Msa0103720:CDS |
| AAGATGTGTTCTCTGGTGAT+TGG | 0.565409 | 1_3:-11090445 | Msa0103720:CDS |
| TGAAAGGGTATTGAAATGAA+AGG | 0.565709 | 1_3:+11095734 | None:intergenic |
| GGGTGATGATTGTGGTGAAA+GGG | 0.565945 | 1_3:+11095719 | None:intergenic |
| TACCCTTCAGATTCAGAACT+AGG | 0.567964 | 1_3:+11095109 | None:intergenic |
| ACATAACTTGGTATCCATCA+AGG | 0.570790 | 1_3:-11091782 | Msa0103720:CDS |
| TAGTCATGGACTTGTCTACA+AGG | 0.572831 | 1_3:-11090309 | Msa0103720:CDS |
| GAAAACACAGGAAACACGAA+CGG | 0.576013 | 1_3:-11091046 | Msa0103720:CDS |
| TGCACCCTTCAAAACTCGTA+CGG | 0.576208 | 1_3:-11095565 | Msa0103720:CDS |
| TGGGTGATGATTGTGGTGAA+AGG | 0.578150 | 1_3:+11095718 | None:intergenic |
| TGAAGTTATCACTTGAGCAT+AGG | 0.581177 | 1_3:-11091893 | Msa0103720:CDS |
| GCCATTGGTTTGAAGAACAA+TGG | 0.581409 | 1_3:-11090977 | Msa0103720:CDS |
| GCACATGGTAGTTCTTGGTG+GGG | 0.581419 | 1_3:-11095181 | Msa0103720:CDS |
| TTGTCCTAGATATGCTTCTG+AGG | 0.582676 | 1_3:+11090691 | None:intergenic |
| TCACCAGAGAACACATCTTG+TGG | 0.585752 | 1_3:+11090449 | None:intergenic |
| GAGATTGTGGAGTTATGCTA+TGG | 0.590139 | 1_3:+11095611 | None:intergenic |
| TTTGATGGCTGTGCTTTGGA+AGG | 0.590529 | 1_3:-11090386 | Msa0103720:CDS |
| TTCCTAGTTCTGAATCTGAA+GGG | 0.594559 | 1_3:-11095111 | Msa0103720:CDS |
| TAGACTAAACCAAGATGTGT+GGG | 0.597289 | 1_3:-11090609 | Msa0103720:CDS |
| AATAGACACATCATGTGCAT+GGG | 0.601730 | 1_3:-11090876 | Msa0103720:CDS |
| CACCACAATCATCACCCACA+TGG | 0.608207 | 1_3:-11095713 | Msa0103720:exon |
| GTTATTAGTACTGGTGCACA+TGG | 0.614209 | 1_3:-11095196 | Msa0103720:CDS |
| CCATCACCAGAGGCATCTAA+GGG | 0.617174 | 1_3:+11091726 | None:intergenic |
| AAAGGCAACATTGATAGAGA+CGG | 0.620268 | 1_3:+11090136 | None:intergenic |
| TTCCTATTCTTAGCCCAATG+TGG | 0.624843 | 1_3:+11090545 | None:intergenic |
| CTAGACTAAACCAAGATGTG+TGG | 0.630678 | 1_3:-11090610 | Msa0103720:CDS |
| GAGGAATTGCTGGAAAACAC+AGG | 0.634296 | 1_3:-11091058 | Msa0103720:CDS |
| TCTAGGACAATCAGAAGACT+CGG | 0.645708 | 1_3:-11090678 | Msa0103720:CDS |
| ACTAAACCAAGATGTGTGGG+AGG | 0.655927 | 1_3:-11090606 | Msa0103720:CDS |
| AGCCATGTGGGTGATGATTG+TGG | 0.657872 | 1_3:+11095711 | None:intergenic |
| ACTTGTGCAGCATTAAACAA+AGG | 0.660665 | 1_3:+11095055 | None:intergenic |
| AATAGGTAGTAAAAGCCATG+TGG | 0.663153 | 1_3:+11095698 | None:intergenic |
| TAGATATATGAAACAAATGG+AGG | 0.667622 | 1_3:+11090078 | None:intergenic |
| ATCATAGACTCCATCACCAG+AGG | 0.673916 | 1_3:+11091716 | None:intergenic |
| ATAGGTAGTAAAAGCCATGT+GGG | 0.678509 | 1_3:+11095699 | None:intergenic |
| CATAACATTCAATTTCACTG+AGG | 0.730952 | 1_3:-11091859 | Msa0103720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTACAGTTTTAAA+TGG | + | chr1_3:11090931-11090950 | None:intergenic | 10.0% |
| !! | ATATTAAGAAAAAATAATTG+TGG | + | chr1_3:11091026-11091045 | None:intergenic | 10.0% |
| !!! | ATATTTGTATAACAATTTTT+TGG | + | chr1_3:11091278-11091297 | None:intergenic | 10.0% |
| !! | TTTAAAAAAATTATTCAATG+CGG | + | chr1_3:11091629-11091648 | None:intergenic | 10.0% |
| !! | ATAATTCTTGATATCATTAT+AGG | + | chr1_3:11090959-11090978 | None:intergenic | 15.0% |
| !! | TTAAAAAAATTATTCAATGC+GGG | + | chr1_3:11091628-11091647 | None:intergenic | 15.0% |
| !!! | ACATTTTATAATATATGTAG+AGG | - | chr1_3:11092429-11092448 | Msa0103720:intron | 15.0% |
| !! | TTGACGATAAAAAAAAATTT+AGG | - | chr1_3:11092570-11092589 | Msa0103720:intron | 15.0% |
| !! | GATAAAAAAAAATTTAGGTA+AGG | - | chr1_3:11092575-11092594 | Msa0103720:intron | 15.0% |
| !! | ATGTTCTTGATTTATTTATA+TGG | + | chr1_3:11092686-11092705 | None:intergenic | 15.0% |
| !!! | TTTTTTAAAAAACTTCGAAA+AGG | - | chr1_3:11094443-11094462 | Msa0103720:intron | 15.0% |
| !!! | TTTTTAAAAAACTTCGAAAA+GGG | - | chr1_3:11094444-11094463 | Msa0103720:intron | 15.0% |
| !!! | TTTTTGGTATTTTGAAAAAT+CGG | + | chr1_3:11094666-11094685 | None:intergenic | 15.0% |
| !! | TCAATAAAAAGATTAAAGTT+AGG | + | chr1_3:11095345-11095364 | None:intergenic | 15.0% |
| !!! | AATTTTGAAAGTTCTCTTAA+AGG | + | chr1_3:11090869-11090888 | None:intergenic | 20.0% |
| !! | TAAAAAAATTATTCAATGCG+GGG | + | chr1_3:11091627-11091646 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTACATTTGGGA+CGG | - | chr1_3:11091827-11091846 | Msa0103720:CDS | 20.0% |
| !! | AATTGAGATATGATATAAGT+AGG | + | chr1_3:11092025-11092044 | None:intergenic | 20.0% |
| !!! | TTTTAAGCAGAAAATATTGA+AGG | - | chr1_3:11092309-11092328 | Msa0103720:intron | 20.0% |
| !!! | CTTTTTGAAGATAAATAAGT+GGG | + | chr1_3:11092476-11092495 | None:intergenic | 20.0% |
| !!! | ACTTTTTGAAGATAAATAAG+TGG | + | chr1_3:11092477-11092496 | None:intergenic | 20.0% |
| !!! | TAATTTTTCTAACAACTGTT+TGG | + | chr1_3:11092795-11092814 | None:intergenic | 20.0% |
| !!! | TGGGATTTAATTTTTTAGAT+TGG | + | chr1_3:11092909-11092928 | None:intergenic | 20.0% |
| !! | ATTGGATATTGTTCAAATAT+CGG | - | chr1_3:11093154-11093173 | Msa0103720:intron | 20.0% |
| !! | TTTAAGAGAGTTTATTATTG+AGG | - | chr1_3:11093429-11093448 | Msa0103720:intron | 20.0% |
| !! | TTAAGAGAGTTTATTATTGA+GGG | - | chr1_3:11093430-11093449 | Msa0103720:intron | 20.0% |
| !! | AGAAAAATTTGTAAATTGGT+TGG | + | chr1_3:11093504-11093523 | None:intergenic | 20.0% |
| !! | CAACAGAAAAATTTGTAAAT+TGG | + | chr1_3:11093508-11093527 | None:intergenic | 20.0% |
| !!! | ATTTTTCTCTCATAAAATAC+CGG | + | chr1_3:11093618-11093637 | None:intergenic | 20.0% |
| !! | ATGTAATTACTGTAATTAAG+AGG | + | chr1_3:11093763-11093782 | None:intergenic | 20.0% |
| !! | TATTTGTAAAGTAACTTCTT+CGG | + | chr1_3:11093819-11093838 | None:intergenic | 20.0% |
| !! | ATTATTGTCATGTTATTCTT+AGG | - | chr1_3:11094230-11094249 | Msa0103720:intron | 20.0% |
| !!! | NNNTAATAAGGTTTTGTTAC+TGG | - | chr1_3:11094370-11094389 | Msa0103720:intron | 20.0% |
| !!! | TCGAAGTTTTTTAAAAAAGT+TGG | + | chr1_3:11094441-11094460 | None:intergenic | 20.0% |
| !!! | ATTTGACTTTATAACTTCAA+GGG | + | chr1_3:11094537-11094556 | None:intergenic | 20.0% |
| !!! | AATTTGACTTTATAACTTCA+AGG | + | chr1_3:11094538-11094557 | None:intergenic | 20.0% |
| !! | CAATAAATAAACTAAAGACA+AGG | - | chr1_3:11094589-11094608 | Msa0103720:intron | 20.0% |
| !!! | ATAAATCCACAAAATTTTTG+TGG | - | chr1_3:11095078-11095097 | Msa0103720:CDS | 20.0% |
| !! | TATTGAAGCTAAAAAACAAA+TGG | - | chr1_3:11095359-11095378 | Msa0103720:CDS | 20.0% |
| !! | ATTATTCATTGAAGTGAATA+AGG | + | chr1_3:11095588-11095607 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTAAGAAATGAAG+AGG | - | chr1_3:11095666-11095685 | Msa0103720:CDS | 20.0% |
| !! | ATGAAAGGGATTATGATTTT+TGG | + | chr1_3:11090087-11090106 | None:intergenic | 25.0% |
| !! | TGAGAATTTTGTGACAATTT+TGG | + | chr1_3:11090401-11090420 | None:intergenic | 25.0% |
| !!! | CATGATTATTGTTTTGTTGT+GGG | + | chr1_3:11090447-11090466 | None:intergenic | 25.0% |
| ! | ATTGATGAAGTTGAGAAAAA+TGG | - | chr1_3:11090565-11090584 | Msa0103720:CDS | 25.0% |
| !! | TGAGAAAAATGGATTTAGTT+TGG | - | chr1_3:11090576-11090595 | Msa0103720:CDS | 25.0% |
| ! | GAATTGAAAATTGTATACCT+TGG | + | chr1_3:11090830-11090849 | None:intergenic | 25.0% |
| !! | CATTAATTTGATTTCTTGTC+TGG | - | chr1_3:11091113-11091132 | Msa0103720:intron | 25.0% |
| ! | GAACTTTGTCTAATATACAT+AGG | - | chr1_3:11091379-11091398 | Msa0103720:intron | 25.0% |
| !! | TCACTTTAACATTTGTTAGA+CGG | - | chr1_3:11091716-11091735 | Msa0103720:CDS | 25.0% |
| ! | AAACTACCATTGATGTTTAA+AGG | + | chr1_3:11091757-11091776 | None:intergenic | 25.0% |
| !!! | TAATTTTTTACATTTGGGAC+GGG | - | chr1_3:11091828-11091847 | Msa0103720:CDS | 25.0% |
| ! | AACTTAACTCTGACTTTAAA+TGG | + | chr1_3:11092127-11092146 | None:intergenic | 25.0% |
| ! | AGAAAGAACCCTTAATAATT+CGG | - | chr1_3:11092533-11092552 | Msa0103720:intron | 25.0% |
| !!! | TTTTTTTTATCGTCAACTCA+TGG | + | chr1_3:11092566-11092585 | None:intergenic | 25.0% |
| !! | GTAACGATATTCTTTTTAAC+GGG | + | chr1_3:11092756-11092775 | None:intergenic | 25.0% |
| !! | CGTAACGATATTCTTTTTAA+CGG | + | chr1_3:11092757-11092776 | None:intergenic | 25.0% |
| ! | TTGTTTAATTCGCTTTGTAA+AGG | + | chr1_3:11092844-11092863 | None:intergenic | 25.0% |
| ! | GGATTGATAAAGTTTACATA+CGG | + | chr1_3:11093366-11093385 | None:intergenic | 25.0% |
| ! | ACATGCATTTAATGATATCT+TGG | + | chr1_3:11093461-11093480 | None:intergenic | 25.0% |
| ! | GTAATTACATAGTACTATGT+AGG | - | chr1_3:11093773-11093792 | Msa0103720:intron | 25.0% |
| ! | TATCATTGTTAAATGATGTC+AGG | - | chr1_3:11093917-11093936 | Msa0103720:intron | 25.0% |
| ! | TGTTTATAGATACGATTTCA+GGG | - | chr1_3:11094082-11094101 | Msa0103720:intron | 25.0% |
| ! | TTGGTTATTACTTACTAAGA+AGG | + | chr1_3:11094422-11094441 | None:intergenic | 25.0% |
| !! | GATCATTTTACAATTGTCTT+CGG | - | chr1_3:11094494-11094513 | Msa0103720:intron | 25.0% |
| ! | CAACGTTGAAGTTATATTAT+AGG | + | chr1_3:11094748-11094767 | None:intergenic | 25.0% |
| !! | AAGAACAATCCTTTTATTCT+TGG | + | chr1_3:11094985-11095004 | None:intergenic | 25.0% |
| ! | AAGGAATTGGTAAAATTTGA+TGG | - | chr1_3:11095432-11095451 | Msa0103720:CDS | 25.0% |
| ! | TAGATATATGAAACAAATGG+AGG | + | chr1_3:11095758-11095777 | None:intergenic | 25.0% |
| !! | GAAAGGGTATTGAAATGAAA+GGG | + | chr1_3:11090101-11090120 | None:intergenic | 30.0% |
| !! | TGAAAGGGTATTGAAATGAA+AGG | + | chr1_3:11090102-11090121 | None:intergenic | 30.0% |
| ! | GAGTTATGCTATGGATTAAA+GGG | + | chr1_3:11090216-11090235 | None:intergenic | 30.0% |
| TGTTGGGTATGTTACATTTA+GGG | + | chr1_3:11090323-11090342 | None:intergenic | 30.0% | |
| TTGTTGGGTATGTTACATTT+AGG | + | chr1_3:11090324-11090343 | None:intergenic | 30.0% | |
| !! | GCATGATTATTGTTTTGTTG+TGG | + | chr1_3:11090448-11090467 | None:intergenic | 30.0% |
| !! | GAAAAATGGATTTAGTTTGG+TGG | - | chr1_3:11090579-11090598 | Msa0103720:CDS | 30.0% |
| ! | TGCTTTTCATGATCATGTTT+TGG | - | chr1_3:11090684-11090703 | Msa0103720:CDS | 30.0% |
| ! | GCTTTTCATGATCATGTTTT+GGG | - | chr1_3:11090685-11090704 | Msa0103720:CDS | 30.0% |
| AAAATTGTATACCTTGGAGA+TGG | + | chr1_3:11090824-11090843 | None:intergenic | 30.0% | |
| TGAAAGTTCTCTTAAAGGAA+TGG | + | chr1_3:11090864-11090883 | None:intergenic | 30.0% | |
| ACGAGTAAGTATATGAGAAT+CGG | + | chr1_3:11091520-11091539 | None:intergenic | 30.0% | |
| GTTGATCCTTTAAACATCAA+TGG | - | chr1_3:11091748-11091767 | Msa0103720:CDS | 30.0% | |
| TGATTTCAAAACACGTGTAT+GGG | + | chr1_3:11091899-11091918 | None:intergenic | 30.0% | |
| !!! | ATACACGTGTTTTGAAATCA+GGG | - | chr1_3:11091899-11091918 | Msa0103720:intron | 30.0% |
| AGATATGATATAAGTAGGCA+TGG | + | chr1_3:11092020-11092039 | None:intergenic | 30.0% | |
| !! | TGTATTATGTACAAGTTGGT+TGG | + | chr1_3:11092203-11092222 | None:intergenic | 30.0% |
| GTTGTGTATTATGTACAAGT+TGG | + | chr1_3:11092207-11092226 | None:intergenic | 30.0% | |
| CAGCATTGTATTAAACAAGT+AGG | + | chr1_3:11092234-11092253 | None:intergenic | 30.0% | |
| TATAATATATGTAGAGGTCG+AGG | - | chr1_3:11092435-11092454 | Msa0103720:intron | 30.0% | |
| AAGATAAATAAGTGGGTATC+TGG | + | chr1_3:11092469-11092488 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGTGTTAACCTTC+AGG | - | chr1_3:11092502-11092521 | Msa0103720:intron | 30.0% |
| TATTAAGGGTTCTTTCTCTA+AGG | + | chr1_3:11092530-11092549 | None:intergenic | 30.0% | |
| ACCCTTAATAATTCGGAATT+CGG | - | chr1_3:11092540-11092559 | Msa0103720:intron | 30.0% | |
| AGAACTTTGTCTTCTCAAAT+TGG | + | chr1_3:11092651-11092670 | None:intergenic | 30.0% | |
| ATCAACCATTTCATGAACAT+TGG | - | chr1_3:11092723-11092742 | Msa0103720:intron | 30.0% | |
| !! | TAACAACTGTTTGGTGTATT+TGG | + | chr1_3:11092786-11092805 | None:intergenic | 30.0% |
| !! | TAGATTGGAAAGCATTTGAT+TGG | + | chr1_3:11092894-11092913 | None:intergenic | 30.0% |
| ! | CAGAAAGACTCAAAAAGTAT+GGG | + | chr1_3:11092928-11092947 | None:intergenic | 30.0% |
| ! | TATTGTGTCTTTTGCTTTGA+CGG | + | chr1_3:11092984-11093003 | None:intergenic | 30.0% |
| ! | GCAAAAGACACAATATCTTT+TGG | - | chr1_3:11092989-11093008 | Msa0103720:intron | 30.0% |
| ! | AATTTTGTCGGGTAGAATTA+TGG | + | chr1_3:11093041-11093060 | None:intergenic | 30.0% |
| TTATTGCAAGACCTATAGTT+TGG | + | chr1_3:11093187-11093206 | None:intergenic | 30.0% | |
| TAGGTCTTGCAATAATAATG+TGG | - | chr1_3:11093192-11093211 | Msa0103720:intron | 30.0% | |
| AAAAAATGCTCTGATTGGAA+GGG | + | chr1_3:11093332-11093351 | None:intergenic | 30.0% | |
| TCAATCCATTTCCTTCAAAA+TGG | + | chr1_3:11093553-11093572 | None:intergenic | 30.0% | |
| ! | ATTAATCGACTTCTTGAAGA+CGG | + | chr1_3:11093717-11093736 | None:intergenic | 30.0% |
| CATAACATTCAATTTCACTG+AGG | - | chr1_3:11093974-11093993 | Msa0103720:intron | 30.0% | |
| ! | TGCAAAAAAGTATGAGTTTG+CGG | - | chr1_3:11094028-11094047 | Msa0103720:intron | 30.0% |
| CTGTTTATAGATACGATTTC+AGG | - | chr1_3:11094081-11094100 | Msa0103720:intron | 30.0% | |
| ATTTCAAGCCAATGAAATAC+TGG | - | chr1_3:11094148-11094167 | Msa0103720:intron | 30.0% | |
| ! | ATTTTACAATTGTCTTCGGA+GGG | - | chr1_3:11094498-11094517 | Msa0103720:intron | 30.0% |
| ATTGTTACTCCATAAGATCT+CGG | + | chr1_3:11094573-11094592 | None:intergenic | 30.0% | |
| TTCAAGAAATTAACAGCCAT+TGG | - | chr1_3:11094841-11094860 | Msa0103720:intron | 30.0% | |
| ! | ATTTTCCCTGCTTCAAAATT+TGG | - | chr1_3:11095021-11095040 | Msa0103720:intron | 30.0% |
| !!! | AATCTCCAAATTTTGAAGCA+GGG | + | chr1_3:11095029-11095048 | None:intergenic | 30.0% |
| !!! | AAATCTCCAAATTTTGAAGC+AGG | + | chr1_3:11095030-11095049 | None:intergenic | 30.0% |
| ! | TCTATGCCACAAAAATTTTG+TGG | + | chr1_3:11095087-11095106 | None:intergenic | 30.0% |
| !!! | CAGATTGCATTTTTCAAGTA+TGG | - | chr1_3:11095258-11095277 | Msa0103720:CDS | 30.0% |
| ! | CTACAATAATACCCTTTTTG+AGG | + | chr1_3:11095507-11095526 | None:intergenic | 30.0% |
| !! | AAAGGGTATTATTGTAGTCA+TGG | - | chr1_3:11095510-11095529 | Msa0103720:CDS | 30.0% |
| ATAGGTAGTAAAAGCCATGT+GGG | + | chr1_3:11090137-11090156 | None:intergenic | 35.0% | |
| AATAGGTAGTAAAAGCCATG+TGG | + | chr1_3:11090138-11090157 | None:intergenic | 35.0% | |
| ! | ACATGGCTTTTACTACCTAT+TGG | - | chr1_3:11090137-11090156 | Msa0103720:three_prime_UTR | 35.0% |
| ! | CTTTTACTACCTATTGGATG+TGG | - | chr1_3:11090143-11090162 | Msa0103720:three_prime_UTR | 35.0% |
| TAAAATCCACCACATCCAAT+AGG | + | chr1_3:11090155-11090174 | None:intergenic | 35.0% | |
| CACATACTTCCACTATTCAT+AGG | - | chr1_3:11090184-11090203 | Msa0103720:three_prime_UTR | 35.0% | |
| ! | ATGCTATGGATTAAAGGGTT+TGG | + | chr1_3:11090211-11090230 | None:intergenic | 35.0% |
| ! | GGAGTTATGCTATGGATTAA+AGG | + | chr1_3:11090217-11090236 | None:intergenic | 35.0% |
| ATTGTTTGGTTGCATTGGAT+GGG | + | chr1_3:11090247-11090266 | None:intergenic | 35.0% | |
| GAAGTTGTTCTTCTGTTGTT+GGG | + | chr1_3:11090339-11090358 | None:intergenic | 35.0% | |
| !! | AAGGTCGTTTTGAACAACAT+AGG | + | chr1_3:11090374-11090393 | None:intergenic | 35.0% |
| !!! | TTGTGACAATTTTGGCTGTA+AGG | + | chr1_3:11090393-11090412 | None:intergenic | 35.0% |
| ! | TTGACTGTAACAGTTGATTC+AGG | - | chr1_3:11090523-11090542 | Msa0103720:CDS | 35.0% |
| ATTGTAACACCTTCCCAATA+AGG | + | chr1_3:11090610-11090629 | None:intergenic | 35.0% | |
| !! | TATTGGGAAGGTGTTACAAT+TGG | - | chr1_3:11090610-11090629 | Msa0103720:CDS | 35.0% |
| !! | ATTGGAGGTGTTATTAGTAC+TGG | - | chr1_3:11090628-11090647 | Msa0103720:CDS | 35.0% |
| !! | TTCCTAGTTCTGAATCTGAA+GGG | - | chr1_3:11090722-11090741 | Msa0103720:CDS | 35.0% |
| TGATTCCAACCTCAAAACTT+TGG | + | chr1_3:11090752-11090771 | None:intergenic | 35.0% | |
| ACTTGTGCAGCATTAAACAA+AGG | + | chr1_3:11090781-11090800 | None:intergenic | 35.0% | |
| ! | ACAAGTTTCTCTTGGAGTTT+TGG | - | chr1_3:11090795-11090814 | Msa0103720:CDS | 35.0% |
| ! | CAAGTTTCTCTTGGAGTTTT+GGG | - | chr1_3:11090796-11090815 | Msa0103720:CDS | 35.0% |
| ! | TTTGATTTCTTGTCTGGCAA+AGG | - | chr1_3:11091119-11091138 | Msa0103720:intron | 35.0% |
| AGTATATGAGAATCGGGTAT+GGG | + | chr1_3:11091513-11091532 | None:intergenic | 35.0% | |
| AAGTATATGAGAATCGGGTA+TGG | + | chr1_3:11091514-11091533 | None:intergenic | 35.0% | |
| CGAGTAAGTATATGAGAATC+GGG | + | chr1_3:11091519-11091538 | None:intergenic | 35.0% | |
| TTCAATTTCTCATCCTCGTT+GGG | + | chr1_3:11091556-11091575 | None:intergenic | 35.0% | |
| ATTCAATTTCTCATCCTCGT+TGG | + | chr1_3:11091557-11091576 | None:intergenic | 35.0% | |
| AAAATTATTCAATGCGGGGA+CGG | + | chr1_3:11091623-11091642 | None:intergenic | 35.0% | |
| GTATTACAACGTTGCTCTTT+GGG | + | chr1_3:11091679-11091698 | None:intergenic | 35.0% | |
| TGTATTACAACGTTGCTCTT+TGG | + | chr1_3:11091680-11091699 | None:intergenic | 35.0% | |
| TGTTAAAGTGAGCGTATTGT+TGG | + | chr1_3:11091707-11091726 | None:intergenic | 35.0% | |
| CTGATTTCAAAACACGTGTA+TGG | + | chr1_3:11091900-11091919 | None:intergenic | 35.0% | |
| !!! | CATACACGTGTTTTGAAATC+AGG | - | chr1_3:11091898-11091917 | Msa0103720:intron | 35.0% |
| !! | TTTTGATTGGGTTTGGGTAT+GGG | + | chr1_3:11091935-11091954 | None:intergenic | 35.0% |
| !!! | ATTTTGATTGGGTTTGGGTA+TGG | + | chr1_3:11091936-11091955 | None:intergenic | 35.0% |
| ATACCCAAACCCAATCAAAA+TGG | - | chr1_3:11091935-11091954 | Msa0103720:intron | 35.0% | |
| TACCCAAACCCAATCAAAAT+GGG | - | chr1_3:11091936-11091955 | Msa0103720:intron | 35.0% | |
| GAACTAATCGATCATTAGGT+TGG | + | chr1_3:11092069-11092088 | None:intergenic | 35.0% | |
| CTTCGAACTAATCGATCATT+AGG | + | chr1_3:11092073-11092092 | None:intergenic | 35.0% | |
| GAATGAGATATGAACCAACT+TGG | + | chr1_3:11092178-11092197 | None:intergenic | 35.0% | |
| GCCGAATTCCGAATTATTAA+GGG | + | chr1_3:11092544-11092563 | None:intergenic | 35.0% | |
| ACTTTGTCTTCTCAAATTGG+TGG | + | chr1_3:11092648-11092667 | None:intergenic | 35.0% | |
| !! | AACTGTTTGGTGTATTTGGT+TGG | + | chr1_3:11092782-11092801 | None:intergenic | 35.0% |
| TCGCTTTGTAAAGGAAAGAA+TGG | + | chr1_3:11092835-11092854 | None:intergenic | 35.0% | |
| GCAGAAAGACTCAAAAAGTA+TGG | + | chr1_3:11092929-11092948 | None:intergenic | 35.0% | |
| GAGACTATACTGTAAAGGAT+TGG | - | chr1_3:11093136-11093155 | Msa0103720:intron | 35.0% | |
| GAAAAAATGCTCTGATTGGA+AGG | + | chr1_3:11093333-11093352 | None:intergenic | 35.0% | |
| !!! | TCCAATCAGAGCATTTTTTC+TGG | - | chr1_3:11093333-11093352 | Msa0103720:intron | 35.0% |
| TCCAGAAAAAATGCTCTGAT+TGG | + | chr1_3:11093337-11093356 | None:intergenic | 35.0% | |
| !!! | AGAGCATTTTTTCTGGAACT+GGG | - | chr1_3:11093340-11093359 | Msa0103720:intron | 35.0% |
| !! | TTTTGGGTGACAATGCAATT+TGG | + | chr1_3:11093392-11093411 | None:intergenic | 35.0% |
| GCATTTAATGATATCTTGGC+AGG | + | chr1_3:11093457-11093476 | None:intergenic | 35.0% | |
| ! | CATTGTCAACACCATTTTGA+AGG | - | chr1_3:11093539-11093558 | Msa0103720:intron | 35.0% |
| !! | CAACACCATTTTGAAGGAAA+TGG | - | chr1_3:11093545-11093564 | Msa0103720:intron | 35.0% |
| !! | AAATGGATTGACTACCTTTG+TGG | - | chr1_3:11093562-11093581 | Msa0103720:intron | 35.0% |
| ! | TAATTTTCCACCTCTTAGTG+AGG | - | chr1_3:11093859-11093878 | Msa0103720:intron | 35.0% |
| ! | AATTTTCCACCTCTTAGTGA+GGG | - | chr1_3:11093860-11093879 | Msa0103720:intron | 35.0% |
| TGAAGTTATCACTTGAGCAT+AGG | - | chr1_3:11093940-11093959 | Msa0103720:intron | 35.0% | |
| ACATAACTTGGTATCCATCA+AGG | - | chr1_3:11094051-11094070 | Msa0103720:intron | 35.0% | |
| GATGGAGTCTATGATTTCAT+TGG | - | chr1_3:11094125-11094144 | Msa0103720:intron | 35.0% | |
| ! | CATTTTACAATTGTCTTCGG+AGG | - | chr1_3:11094497-11094516 | Msa0103720:intron | 35.0% |
| TGACTTTATAACTTCAAGGG+AGG | + | chr1_3:11094534-11094553 | None:intergenic | 35.0% | |
| TAAATTGCAGATGTGCAGTT+AGG | + | chr1_3:11094695-11094714 | None:intergenic | 35.0% | |
| TTAACAGCATCCACTACATT+GGG | - | chr1_3:11094817-11094836 | Msa0103720:intron | 35.0% | |
| TTTCTTGAATCCCAATGTAG+TGG | + | chr1_3:11094830-11094849 | None:intergenic | 35.0% | |
| TTCACTAGCTATCCTGTAAT+TGG | - | chr1_3:11094886-11094905 | Msa0103720:intron | 35.0% | |
| TATCCTGTAATTGGCTATCA+AGG | - | chr1_3:11094895-11094914 | Msa0103720:intron | 35.0% | |
| ! | TTTCCTTGATAGCCAATTAC+AGG | + | chr1_3:11094901-11094920 | None:intergenic | 35.0% |
| CAAGGAAAAATGCAAACTTC+AGG | - | chr1_3:11094913-11094932 | Msa0103720:intron | 35.0% | |
| AATAGACACATCATGTGCAT+GGG | - | chr1_3:11094957-11094976 | Msa0103720:intron | 35.0% | |
| TGTGGCATAGACATCTATAA+TGG | - | chr1_3:11095096-11095115 | Msa0103720:CDS | 35.0% | |
| GGTTTAGTCTAGGAGTAAAT+TGG | + | chr1_3:11095215-11095234 | None:intergenic | 35.0% | |
| TAGACTAAACCAAGATGTGT+GGG | - | chr1_3:11095224-11095243 | Msa0103720:CDS | 35.0% | |
| ! | TGGTCAGATGAGATTTTGTA+TGG | - | chr1_3:11095408-11095427 | Msa0103720:CDS | 35.0% |
| ! | GGTCAGATGAGATTTTGTAT+GGG | - | chr1_3:11095409-11095428 | Msa0103720:CDS | 35.0% |
| ! | AGATGAGATTTTGTATGGGA+AGG | - | chr1_3:11095413-11095432 | Msa0103720:CDS | 35.0% |
| ! | GATTTTGTATGGGAAGGAAT+TGG | - | chr1_3:11095419-11095438 | Msa0103720:CDS | 35.0% |
| ! | AAAATTTGATGGCTGTGCTT+TGG | - | chr1_3:11095443-11095462 | Msa0103720:CDS | 35.0% |
| AGACATTGTAGTCCTCAAAA+AGG | - | chr1_3:11095492-11095511 | Msa0103720:CDS | 35.0% | |
| GACATTGTAGTCCTCAAAAA+GGG | - | chr1_3:11095493-11095512 | Msa0103720:CDS | 35.0% | |
| ACAAGGAAGCTAAAGTTTGT+AGG | - | chr1_3:11095541-11095560 | Msa0103720:CDS | 35.0% | |
| AAAGGCAACATTGATAGAGA+CGG | + | chr1_3:11095700-11095719 | None:intergenic | 35.0% | |
| ! | ACGTGATAAAGGTGTGATAA+AGG | + | chr1_3:11095718-11095737 | None:intergenic | 35.0% |
| TTACTACCTATTGGATGTGG+TGG | - | chr1_3:11090146-11090165 | Msa0103720:three_prime_UTR | 40.0% | |
| GAGATTGTGGAGTTATGCTA+TGG | + | chr1_3:11090225-11090244 | None:intergenic | 40.0% | |
| GATTGTTTGGTTGCATTGGA+TGG | + | chr1_3:11090248-11090267 | None:intergenic | 40.0% | |
| TGCAGATTGTTTGGTTGCAT+TGG | + | chr1_3:11090252-11090271 | None:intergenic | 40.0% | |
| ! | TTTGAAGGGTGCAGATTGTT+TGG | + | chr1_3:11090261-11090280 | None:intergenic | 40.0% |
| CGAAGTTGTTCTTCTGTTGT+TGG | + | chr1_3:11090340-11090359 | None:intergenic | 40.0% | |
| ! | GTTGTGGGCATGATAGTTTT+GGG | + | chr1_3:11090432-11090451 | None:intergenic | 40.0% |
| ! | TGTTGTGGGCATGATAGTTT+TGG | + | chr1_3:11090433-11090452 | None:intergenic | 40.0% |
| !! | GTTATTAGTACTGGTGCACA+TGG | - | chr1_3:11090637-11090656 | Msa0103720:CDS | 40.0% |
| !! | GTTCCTAGTTCTGAATCTGA+AGG | - | chr1_3:11090721-11090740 | Msa0103720:CDS | 40.0% |
| TACCCTTCAGATTCAGAACT+AGG | + | chr1_3:11090727-11090746 | None:intergenic | 40.0% | |
| !! | AAGGGTATGCCAAAGTTTTG+AGG | - | chr1_3:11090740-11090759 | Msa0103720:CDS | 40.0% |
| !!! | GTATGCCAAAGTTTTGAGGT+TGG | - | chr1_3:11090744-11090763 | Msa0103720:CDS | 40.0% |
| AATGCTGCACAAGTTTCTCT+TGG | - | chr1_3:11090787-11090806 | Msa0103720:CDS | 40.0% | |
| CAATGACTTATATCTAGCCG+TGG | - | chr1_3:11091448-11091467 | Msa0103720:intron | 40.0% | |
| TTATATCTAGCCGTGGCAAT+GGG | - | chr1_3:11091455-11091474 | Msa0103720:intron | 40.0% | |
| GTATATGAGAATCGGGTATG+GGG | + | chr1_3:11091512-11091531 | None:intergenic | 40.0% | |
| AAATTATTCAATGCGGGGAC+GGG | + | chr1_3:11091622-11091641 | None:intergenic | 40.0% | |
| !! | TTTTACATTTGGGACGGGTT+TGG | - | chr1_3:11091833-11091852 | Msa0103720:CDS | 40.0% |
| ! | TTTACATTTGGGACGGGTTT+GGG | - | chr1_3:11091834-11091853 | Msa0103720:CDS | 40.0% |
| TTCAAAACACGTGTATGGGA+CGG | + | chr1_3:11091895-11091914 | None:intergenic | 40.0% | |
| ACCCAAACCCAATCAAAATG+GGG | - | chr1_3:11091937-11091956 | Msa0103720:intron | 40.0% | |
| !!! | TCCCCATTTTGATTGGGTTT+GGG | + | chr1_3:11091941-11091960 | None:intergenic | 40.0% |
| !!! | TTCCCCATTTTGATTGGGTT+TGG | + | chr1_3:11091942-11091961 | None:intergenic | 40.0% |
| !!! | GGGTTTTCCCCATTTTGATT+GGG | + | chr1_3:11091947-11091966 | None:intergenic | 40.0% |
| AAAACCCGTCAAATTGGGTT+TGG | - | chr1_3:11091960-11091979 | Msa0103720:intron | 40.0% | |
| TACCTTTAGACCATCCAAGT+TGG | - | chr1_3:11092161-11092180 | Msa0103720:intron | 40.0% | |
| AACCAACTTGGATGGTCTAA+AGG | + | chr1_3:11092166-11092185 | None:intergenic | 40.0% | |
| GAGATATGAACCAACTTGGA+TGG | + | chr1_3:11092174-11092193 | None:intergenic | 40.0% | |
| TCAACTGAGCTAAACTTACG+AGG | + | chr1_3:11092404-11092423 | None:intergenic | 40.0% | |
| ! | TCTTTCTCTAAGGAACCTGA+AGG | + | chr1_3:11092520-11092539 | None:intergenic | 40.0% |
| GGCCGAATTCCGAATTATTA+AGG | + | chr1_3:11092545-11092564 | None:intergenic | 40.0% | |
| !! | GCTACAAAAGCATTGCGAAA+CGG | - | chr1_3:11092616-11092635 | Msa0103720:intron | 40.0% |
| TTGTCTTCTCAAATTGGTGG+AGG | + | chr1_3:11092645-11092664 | None:intergenic | 40.0% | |
| AGCTGCCAATGTTCATGAAA+TGG | + | chr1_3:11092731-11092750 | None:intergenic | 40.0% | |
| TTTGTCGGGTAGAATTATGG+AGG | + | chr1_3:11093038-11093057 | None:intergenic | 40.0% | |
| ! | TTCTGGTGCAGAATTTTGTC+GGG | + | chr1_3:11093052-11093071 | None:intergenic | 40.0% |
| ! | GTTCTGGTGCAGAATTTTGT+CGG | + | chr1_3:11093053-11093072 | None:intergenic | 40.0% |
| ATGCAGAAATTTACTGCAGC+TGG | + | chr1_3:11093097-11093116 | None:intergenic | 40.0% | |
| TACAGTATAGTCTCCGACAA+AGG | + | chr1_3:11093130-11093149 | None:intergenic | 40.0% | |
| TGTCGGAGACTATACTGTAA+AGG | - | chr1_3:11093131-11093150 | Msa0103720:intron | 40.0% | |
| ! | TCGGTTGCTTTCCAAACTAT+AGG | - | chr1_3:11093173-11093192 | Msa0103720:intron | 40.0% |
| AAAGCAGTCAGAAGAGTAGT+TGG | + | chr1_3:11093224-11093243 | None:intergenic | 40.0% | |
| CGTCGGAGGTAGAATAAAAT+TGG | + | chr1_3:11093253-11093272 | None:intergenic | 40.0% | |
| TATGGTCAGACTCAATTTGG+TGG | + | chr1_3:11093293-11093312 | None:intergenic | 40.0% | |
| GGTTATGGTCAGACTCAATT+TGG | + | chr1_3:11093296-11093315 | None:intergenic | 40.0% | |
| GGATGAATACGGTAAGGTTA+TGG | + | chr1_3:11093311-11093330 | None:intergenic | 40.0% | |
| CTGATTGGAAGGGATGAATA+CGG | + | chr1_3:11093322-11093341 | None:intergenic | 40.0% | |
| !!! | CAGAGCATTTTTTCTGGAAC+TGG | - | chr1_3:11093339-11093358 | Msa0103720:intron | 40.0% |
| AACTTCTTCGGTACGTGTAA+AGG | + | chr1_3:11093807-11093826 | None:intergenic | 40.0% | |
| ATGAGTTTGCGGACATAACT+TGG | - | chr1_3:11094039-11094058 | Msa0103720:intron | 40.0% | |
| CTGAGAGACCAGTATTTCAT+TGG | + | chr1_3:11094159-11094178 | None:intergenic | 40.0% | |
| ! | GAAGGTACAATATGACAGTG+AGG | + | chr1_3:11094404-11094423 | None:intergenic | 40.0% |
| ! | TGCAGTTAGGTCGCAATTTT+TGG | + | chr1_3:11094682-11094701 | None:intergenic | 40.0% |
| GAAAACACAGGAAACACGAA+CGG | - | chr1_3:11094787-11094806 | Msa0103720:intron | 40.0% | |
| AAAACACAGGAAACACGAAC+GGG | - | chr1_3:11094788-11094807 | Msa0103720:intron | 40.0% | |
| CTTAACAGCATCCACTACAT+TGG | - | chr1_3:11094816-11094835 | Msa0103720:intron | 40.0% | |
| !! | GCCATTGGTTTGAAGAACAA+TGG | - | chr1_3:11094856-11094875 | Msa0103720:intron | 40.0% |
| GCCATTGTTCTTCAAACCAA+TGG | + | chr1_3:11094860-11094879 | None:intergenic | 40.0% | |
| CAGGATAGCTAGTGAAGATT+AGG | + | chr1_3:11094882-11094901 | None:intergenic | 40.0% | |
| GAATAGACACATCATGTGCA+TGG | - | chr1_3:11094956-11094975 | Msa0103720:intron | 40.0% | |
| GCATGGGATCCAAGAATAAA+AGG | - | chr1_3:11094973-11094992 | Msa0103720:intron | 40.0% | |
| ! | AAAGCCTCAGAAGCATATCT+AGG | - | chr1_3:11095138-11095157 | Msa0103720:CDS | 40.0% |
| TTGTCCTAGATATGCTTCTG+AGG | + | chr1_3:11095145-11095164 | None:intergenic | 40.0% | |
| ! | TCTAGGACAATCAGAAGACT+CGG | - | chr1_3:11095155-11095174 | Msa0103720:CDS | 40.0% |
| CACACATCTTGGTTTAGTCT+AGG | + | chr1_3:11095225-11095244 | None:intergenic | 40.0% | |
| CTAGACTAAACCAAGATGTG+TGG | - | chr1_3:11095223-11095242 | Msa0103720:CDS | 40.0% | |
| TTCCTATTCTTAGCCCAATG+TGG | + | chr1_3:11095291-11095310 | None:intergenic | 40.0% | |
| AAGATGTGTTCTCTGGTGAT+TGG | - | chr1_3:11095388-11095407 | Msa0103720:CDS | 40.0% | |
| TAGTCATGGACTTGTCTACA+AGG | - | chr1_3:11095524-11095543 | Msa0103720:CDS | 40.0% | |
| AAAGCGAACACACGTGATAA+AGG | + | chr1_3:11095729-11095748 | None:intergenic | 40.0% | |
| GGGTGATGATTGTGGTGAAA+GGG | + | chr1_3:11090117-11090136 | None:intergenic | 45.0% | |
| TGGGTGATGATTGTGGTGAA+AGG | + | chr1_3:11090118-11090137 | None:intergenic | 45.0% | |
| ! | GGGTTTGGTCCTATGAATAG+TGG | + | chr1_3:11090196-11090215 | None:intergenic | 45.0% |
| TTGCATTGGATGGGAGATTG+TGG | + | chr1_3:11090238-11090257 | None:intergenic | 45.0% | |
| TGCACCCTTCAAAACTCGTA+CGG | - | chr1_3:11090268-11090287 | Msa0103720:CDS | 45.0% | |
| !!! | TGTGCCGTACGAGTTTTGAA+GGG | + | chr1_3:11090275-11090294 | None:intergenic | 45.0% |
| !! | ATGTGCCGTACGAGTTTTGA+AGG | + | chr1_3:11090276-11090295 | None:intergenic | 45.0% |
| TTCAAAACTCGTACGGCACA+TGG | - | chr1_3:11090275-11090294 | Msa0103720:CDS | 45.0% | |
| ! | TTTGGTGGCTGCACCTTATT+GGG | - | chr1_3:11090594-11090613 | Msa0103720:CDS | 45.0% |
| !! | TGGGAAGGTGTTACAATTGG+AGG | - | chr1_3:11090613-11090632 | Msa0103720:CDS | 45.0% |
| TGCACATGGTAGTTCTTGGT+GGG | - | chr1_3:11090651-11090670 | Msa0103720:CDS | 45.0% | |
| CTTATATCTAGCCGTGGCAA+TGG | - | chr1_3:11091454-11091473 | Msa0103720:intron | 45.0% | |
| TATATCTAGCCGTGGCAATG+GGG | - | chr1_3:11091456-11091475 | Msa0103720:intron | 45.0% | |
| ATCCTCGTTGGGTATGAGTA+GGG | + | chr1_3:11091545-11091564 | None:intergenic | 45.0% | |
| AATTATTCAATGCGGGGACG+GGG | + | chr1_3:11091621-11091640 | None:intergenic | 45.0% | |
| GGGACGGATAACAGGTATAT+AGG | + | chr1_3:11091879-11091898 | None:intergenic | 45.0% | |
| TTGGGTTTGGGTATGGGTAT+GGG | + | chr1_3:11091929-11091948 | None:intergenic | 45.0% | |
| ATTGGGTTTGGGTATGGGTA+TGG | + | chr1_3:11091930-11091949 | None:intergenic | 45.0% | |
| !! | CGGGTTTTCCCCATTTTGAT+TGG | + | chr1_3:11091948-11091967 | None:intergenic | 45.0% |
| ATGGGGAAAACCCGTCAAAT+TGG | - | chr1_3:11091954-11091973 | Msa0103720:intron | 45.0% | |
| TGGGGAAAACCCGTCAAATT+GGG | - | chr1_3:11091955-11091974 | Msa0103720:intron | 45.0% | |
| CGAACCAAACCCAATTTGAC+GGG | + | chr1_3:11091967-11091986 | None:intergenic | 45.0% | |
| CCGAACCAAACCCAATTTGA+CGG | + | chr1_3:11091968-11091987 | None:intergenic | 45.0% | |
| ! | CCGTCAAATTGGGTTTGGTT+CGG | - | chr1_3:11091965-11091984 | Msa0103720:intron | 45.0% |
| !! | CAAATTGGGTTTGGTTCGGA+CGG | - | chr1_3:11091969-11091988 | Msa0103720:intron | 45.0% |
| !! | AAATTGGGTTTGGTTCGGAC+GGG | - | chr1_3:11091970-11091989 | Msa0103720:intron | 45.0% |
| ACGCAAATGAACGGTGGAAT+TGG | + | chr1_3:11092099-11092118 | None:intergenic | 45.0% | |
| AATTCCACCGTTCATTTGCG+TGG | - | chr1_3:11092098-11092117 | Msa0103720:intron | 45.0% | |
| ATGGAGTCCACGCAAATGAA+CGG | + | chr1_3:11092108-11092127 | None:intergenic | 45.0% | |
| TATGGAGGTGAGGAGTTACT+CGG | + | chr1_3:11093023-11093042 | None:intergenic | 45.0% | |
| GTCAGAAGAGTAGTTGGAGA+CGG | + | chr1_3:11093218-11093237 | None:intergenic | 45.0% | |
| TGGAAGGGATGAATACGGTA+AGG | + | chr1_3:11093317-11093336 | None:intergenic | 45.0% | |
| GGTGACAATGCAATTTGGTC+AGG | + | chr1_3:11093387-11093406 | None:intergenic | 45.0% | |
| TGGATTGACTACCTTTGTGG+CGG | - | chr1_3:11093565-11093584 | Msa0103720:intron | 45.0% | |
| CCGGAGAATACACTAAACTG+CGG | + | chr1_3:11093599-11093618 | None:intergenic | 45.0% | |
| CCGCAGTTTAGTGTATTCTC+CGG | - | chr1_3:11093596-11093615 | Msa0103720:intron | 45.0% | |
| TAACATCCCTCACTAAGAGG+TGG | + | chr1_3:11093869-11093888 | None:intergenic | 45.0% | |
| TGCTAACATCCCTCACTAAG+AGG | + | chr1_3:11093872-11093891 | None:intergenic | 45.0% | |
| TAAACAGCTGTGTGCCTTGA+TGG | + | chr1_3:11094068-11094087 | None:intergenic | 45.0% | |
| ATCATAGACTCCATCACCAG+AGG | + | chr1_3:11094120-11094139 | None:intergenic | 45.0% | |
| !!! | AAGGTTTTGTTACTGGCGTG+AGG | - | chr1_3:11094377-11094396 | Msa0103720:intron | 45.0% |
| ACTACTGAGCCGAGATCTTA+TGG | - | chr1_3:11094561-11094580 | Msa0103720:intron | 45.0% | |
| ACTTCAACGTTGTCATGCAG+AGG | - | chr1_3:11094756-11094775 | Msa0103720:intron | 45.0% | |
| TTGTCATGCAGAGGAATTGC+TGG | - | chr1_3:11094765-11094784 | Msa0103720:intron | 45.0% | |
| GAGGAATTGCTGGAAAACAC+AGG | - | chr1_3:11094775-11094794 | Msa0103720:intron | 45.0% | |
| ACTAAACCAAGATGTGTGGG+AGG | - | chr1_3:11095227-11095246 | Msa0103720:CDS | 45.0% | |
| ! | AGTATGGTGCTAAGCCACAT+TGG | - | chr1_3:11095274-11095293 | Msa0103720:CDS | 45.0% |
| ! | GTATGGTGCTAAGCCACATT+GGG | - | chr1_3:11095275-11095294 | Msa0103720:CDS | 45.0% |
| AGCCACATTGGGCTAAGAAT+AGG | - | chr1_3:11095286-11095305 | Msa0103720:CDS | 45.0% | |
| GATCCACAAGATGTGTTCTC+TGG | - | chr1_3:11095381-11095400 | Msa0103720:CDS | 45.0% | |
| TCACCAGAGAACACATCTTG+TGG | + | chr1_3:11095387-11095406 | None:intergenic | 45.0% | |
| ! | TTTGATGGCTGTGCTTTGGA+AGG | - | chr1_3:11095447-11095466 | Msa0103720:CDS | 45.0% |
| !!! | ATAAAATAATTTTTTACATT+TGG | - | chr1_3:11091822-11091841 | Msa0103720:CDS | 5.0% |
| !!! | TAAAATAATTTTTTACATTT+GGG | - | chr1_3:11091823-11091842 | Msa0103720:CDS | 5.0% |
| !!! | TTTAAATTTTATAAAGTTTT+GGG | + | chr1_3:11093408-11093427 | None:intergenic | 5.0% |
| !!! | TTTTAAATTTTATAAAGTTT+TGG | + | chr1_3:11093409-11093428 | None:intergenic | 5.0% |
| CACCACAATCATCACCCACA+TGG | - | chr1_3:11090120-11090139 | Msa0103720:three_prime_UTR | 50.0% | |
| AGCCATGTGGGTGATGATTG+TGG | + | chr1_3:11090125-11090144 | None:intergenic | 50.0% | |
| ! | GTTTGGTGGCTGCACCTTAT+TGG | - | chr1_3:11090593-11090612 | Msa0103720:CDS | 50.0% |
| CTGGTGCACATGGTAGTTCT+TGG | - | chr1_3:11090647-11090666 | Msa0103720:CDS | 50.0% | |
| GTGCACATGGTAGTTCTTGG+TGG | - | chr1_3:11090650-11090669 | Msa0103720:CDS | 50.0% | |
| GCACATGGTAGTTCTTGGTG+GGG | - | chr1_3:11090652-11090671 | Msa0103720:CDS | 50.0% | |
| !!! | AGTTTTGGGTGCCATCTCCA+AGG | - | chr1_3:11090810-11090829 | Msa0103720:CDS | 50.0% |
| GAGAATCGGGTATGGGGATA+GGG | + | chr1_3:11091506-11091525 | None:intergenic | 50.0% | |
| TGAGAATCGGGTATGGGGAT+AGG | + | chr1_3:11091507-11091526 | None:intergenic | 50.0% | |
| TACCCTACTCATACCCAACG+AGG | - | chr1_3:11091540-11091559 | Msa0103720:intron | 50.0% | |
| CATCCTCGTTGGGTATGAGT+AGG | + | chr1_3:11091546-11091565 | None:intergenic | 50.0% | |
| AATCTCATCCCCGTCCTTGA+CGG | - | chr1_3:11091574-11091593 | Msa0103720:intron | 50.0% | |
| ! | ATTTGGGACGGGTTTGGGTA+TGG | - | chr1_3:11091839-11091858 | Msa0103720:CDS | 50.0% |
| ! | TTTGGGACGGGTTTGGGTAT+GGG | - | chr1_3:11091840-11091859 | Msa0103720:CDS | 50.0% |
| TTTGGGTATGGGTTCAGGGT+GGG | - | chr1_3:11091851-11091870 | Msa0103720:CDS | 50.0% | |
| ACGTGTATGGGACGGATAAC+AGG | + | chr1_3:11091887-11091906 | None:intergenic | 50.0% | |
| CGGGTAGAATTATGGAGGTG+AGG | + | chr1_3:11093033-11093052 | None:intergenic | 50.0% | |
| CATGAGTGATGCGCCTTTGT+CGG | - | chr1_3:11093114-11093133 | Msa0103720:intron | 50.0% | |
| !! | CAATTTGGTGGTGCTCCGAT+TGG | + | chr1_3:11093281-11093300 | None:intergenic | 50.0% |
| GGATTGACTACCTTTGTGGC+GGG | - | chr1_3:11093566-11093585 | Msa0103720:intron | 50.0% | |
| !! | CCATCACCAGAGGCATCTAA+GGG | + | chr1_3:11094110-11094129 | None:intergenic | 50.0% |
| !! | TCCATCACCAGAGGCATCTA+AGG | + | chr1_3:11094111-11094130 | None:intergenic | 50.0% |
| TCTCAGTCAGTTAGAGCAGC+AGG | - | chr1_3:11094173-11094192 | Msa0103720:intron | 50.0% | |
| CCAATTCCTCCCACACATCT+TGG | + | chr1_3:11095236-11095255 | None:intergenic | 50.0% | |
| CCAAGATGTGTGGGAGGAAT+TGG | - | chr1_3:11095233-11095252 | Msa0103720:CDS | 50.0% | |
| GTGGCTGCACCTTATTGGGA+AGG | - | chr1_3:11090598-11090617 | Msa0103720:CDS | 55.0% | |
| GGTAGTTCTTGGTGGGGCAA+AGG | - | chr1_3:11090658-11090677 | Msa0103720:CDS | 55.0% | |
| AGTTCTTGGTGGGGCAAAGG+TGG | - | chr1_3:11090661-11090680 | Msa0103720:CDS | 55.0% | |
| ATCGGGTATGGGGATAGGGA+AGG | + | chr1_3:11091502-11091521 | None:intergenic | 55.0% | |
| ATCTCATCCCCGTCCTTGAC+GGG | - | chr1_3:11091575-11091594 | Msa0103720:intron | 55.0% | |
| ATACCCGAACCCGTCAAGGA+CGG | + | chr1_3:11091587-11091606 | None:intergenic | 55.0% | |
| ACGGGTTTGGGTATGGGTTC+AGG | - | chr1_3:11091846-11091865 | Msa0103720:CDS | 55.0% | |
| CGGGTTTGGGTATGGGTTCA+GGG | - | chr1_3:11091847-11091866 | Msa0103720:CDS | 55.0% | |
| GTTTGGGTATGGGTTCAGGG+TGG | - | chr1_3:11091850-11091869 | Msa0103720:CDS | 55.0% | |
| ! | TGGTTCGGACGGGTAACTGT+CGG | - | chr1_3:11091980-11091999 | Msa0103720:intron | 55.0% |
| GAGTCCACGCAAATGAACGG+TGG | + | chr1_3:11092105-11092124 | None:intergenic | 55.0% | |
| !! | AGCAGAAATGGCGCTGGTTC+TGG | + | chr1_3:11093069-11093088 | None:intergenic | 55.0% |
| CAGCTGGTACGCAGCAGAAA+TGG | + | chr1_3:11093081-11093100 | None:intergenic | 55.0% | |
| ! | TGGTGGTGCTCCGATTGGAA+GGG | + | chr1_3:11093276-11093295 | None:intergenic | 55.0% |
| !! | TTGGTGGTGCTCCGATTGGA+AGG | + | chr1_3:11093277-11093296 | None:intergenic | 55.0% |
| AGGGTTCCCTTAGATGCCTC+TGG | - | chr1_3:11094101-11094120 | Msa0103720:intron | 55.0% | |
| CCCTTAGATGCCTCTGGTGA+TGG | - | chr1_3:11094107-11094126 | Msa0103720:intron | 55.0% | |
| ATCTAGCCGTGGCAATGGGG+CGG | - | chr1_3:11091459-11091478 | Msa0103720:intron | 60.0% | |
| !! | ATCCCCGTCCTTGACGGGTT+CGG | - | chr1_3:11091580-11091599 | Msa0103720:intron | 60.0% |
| TACCCGAACCCGTCAAGGAC+GGG | + | chr1_3:11091586-11091605 | None:intergenic | 60.0% | |
| AGGGATACCCGAACCCGTCA+AGG | + | chr1_3:11091591-11091610 | None:intergenic | 60.0% | |
| TTCAATGCGGGGACGGGGAT+GGG | + | chr1_3:11091616-11091635 | None:intergenic | 60.0% | |
| ATTCAATGCGGGGACGGGGA+TGG | + | chr1_3:11091617-11091636 | None:intergenic | 60.0% | |
| CGGACGGGTAACTGTCGGTA+TGG | - | chr1_3:11091985-11092004 | Msa0103720:intron | 60.0% | |
| GTACGCAGCAGAAATGGCGC+TGG | + | chr1_3:11093075-11093094 | None:intergenic | 60.0% | |
| ACCTCCGACGCCCTTCCAAT+CGG | - | chr1_3:11093263-11093282 | Msa0103720:intron | 60.0% | |
| ! | TGCTCCGATTGGAAGGGCGT+CGG | + | chr1_3:11093270-11093289 | None:intergenic | 60.0% |
| CGGTGACTTTCCCGCCACAA+AGG | + | chr1_3:11093579-11093598 | None:intergenic | 60.0% | |
| TCTAGCCGTGGCAATGGGGC+GGG | - | chr1_3:11091460-11091479 | Msa0103720:intron | 65.0% | |
| !! | TCCCCGTCCTTGACGGGTTC+GGG | - | chr1_3:11091581-11091600 | Msa0103720:intron | 65.0% |
| ACCCGAACCCGTCAAGGACG+GGG | + | chr1_3:11091585-11091604 | None:intergenic | 65.0% | |
| TCAATGCGGGGACGGGGATG+GGG | + | chr1_3:11091615-11091634 | None:intergenic | 65.0% | |
| !! | TCCGATTGGAAGGGCGTCGG+AGG | + | chr1_3:11093267-11093286 | None:intergenic | 65.0% |
| CTAGCCGTGGCAATGGGGCG+GGG | - | chr1_3:11091461-11091480 | Msa0103720:intron | 70.0% | |
| CCCACCCCGCCCCATTGCCA+CGG | + | chr1_3:11091468-11091487 | None:intergenic | 75.0% | |
| CCGTGGCAATGGGGCGGGGT+GGG | - | chr1_3:11091465-11091484 | Msa0103720:intron | 75.0% | |
| CGTGGCAATGGGGCGGGGTG+GGG | - | chr1_3:11091466-11091485 | Msa0103720:intron | 75.0% | |
| GCAATGGGGCGGGGTGGGGA+CGG | - | chr1_3:11091470-11091489 | Msa0103720:intron | 75.0% | |
| CAATGGGGCGGGGTGGGGAC+GGG | - | chr1_3:11091471-11091490 | Msa0103720:intron | 75.0% | |
| ! | GCCGTGGCAATGGGGCGGGG+TGG | - | chr1_3:11091464-11091483 | Msa0103720:intron | 80.0% |
| ! | GCGGGGACGGGGATGGGGCA+GGG | + | chr1_3:11091610-11091629 | None:intergenic | 80.0% |
| ! | TGCGGGGACGGGGATGGGGC+AGG | + | chr1_3:11091611-11091630 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 11090078 | 11095777 | 11090078 | ID=Msa0103720;Name=Msa0103720 |
| chr1_3 | mRNA | 11090078 | 11095777 | 11090078 | ID=Msa0103720-mRNA-1;Parent=Msa0103720;Name=Msa0103720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=61|1|1|1|1|1|3|175|591 |
| chr1_3 | exon | 11090078 | 11091079 | 11090078 | ID=Msa0103720-mRNA-1:exon:4563;Parent=Msa0103720-mRNA-1 |
| chr1_3 | exon | 11091661 | 11091916 | 11091661 | ID=Msa0103720-mRNA-1:exon:4562;Parent=Msa0103720-mRNA-1 |
| chr1_3 | exon | 11095024 | 11095777 | 11095024 | ID=Msa0103720-mRNA-1:exon:4561;Parent=Msa0103720-mRNA-1 |
| chr1_3 | five_prime_UTR | 11095717 | 11095777 | 11095717 | ID=Msa0103720-mRNA-1:five_prime_utr;Parent=Msa0103720-mRNA-1 |
| chr1_3 | CDS | 11095024 | 11095716 | 11095024 | ID=Msa0103720-mRNA-1:cds;Parent=Msa0103720-mRNA-1 |
| chr1_3 | CDS | 11091661 | 11091916 | 11091661 | ID=Msa0103720-mRNA-1:cds;Parent=Msa0103720-mRNA-1 |
| chr1_3 | CDS | 11090253 | 11091079 | 11090253 | ID=Msa0103720-mRNA-1:cds;Parent=Msa0103720-mRNA-1 |
| chr1_3 | three_prime_UTR | 11090078 | 11090252 | 11090078 | ID=Msa0103720-mRNA-1:three_prime_utr;Parent=Msa0103720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
