Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008880 | XP_024628980.1 | 93.898 | 590 | 36 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008880 | sp|Q9LYD8|GGLO3_ARATH | 65.171 | 557 | 187 | 4 | 28 | 579 | 22 | 576 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008620 | Msa0008880 | 0.941439 | 4.151681e-101 | -8.615850e-47 |
| Msa0008880 | Msa0058850 | 0.836578 | 8.621179e-57 | -8.615850e-47 |
| Msa0008880 | Msa0058910 | 0.879601 | 1.090538e-69 | -8.615850e-47 |
| Msa0008880 | Msa0103720 | 0.870300 | 1.619743e-66 | -8.615850e-47 |
| Msa0008880 | Msa0150100 | 0.867883 | 9.854990e-66 | -8.615850e-47 |
| Msa0008880 | Msa0150150 | 0.853258 | 2.691046e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008880 | MtrunA17_Chr1g0157561 | 93.889 | 360 | 22 | 0 | 231 | 590 | 19 | 378 | 0.0 | 712 |
| Msa0008880 | MtrunA17_Chr8g0346061 | 47.818 | 573 | 288 | 6 | 14 | 578 | 10 | 579 | 0.0 | 551 |
| Msa0008880 | MtrunA17_Chr5g0394031 | 48.750 | 560 | 275 | 7 | 28 | 579 | 28 | 583 | 1.61e-178 | 517 |
| Msa0008880 | MtrunA17_Chr1g0157571 | 93.534 | 232 | 15 | 0 | 1 | 232 | 1 | 232 | 5.41e-157 | 449 |
| Msa0008880 | MtrunA17_Chr1g0157541 | 93.233 | 133 | 9 | 0 | 368 | 500 | 3 | 135 | 1.95e-85 | 262 |
| Msa0008880 | MtrunA17_Chr1g0172001 | 91.026 | 78 | 7 | 0 | 404 | 481 | 11 | 88 | 2.53e-43 | 150 |
| Msa0008880 | MtrunA17_Chr7g0276181 | 47.059 | 136 | 70 | 1 | 446 | 579 | 16 | 151 | 6.73e-36 | 132 |
| Msa0008880 | MtrunA17_Chr8g0346031 | 43.262 | 141 | 53 | 2 | 163 | 302 | 12 | 126 | 1.66e-26 | 105 |
| Msa0008880 | MtrunA17_Chr7g0276161 | 40.678 | 118 | 68 | 1 | 30 | 145 | 27 | 144 | 3.23e-25 | 102 |
| Msa0008880 | MtrunA17_Chr1g0159391 | 82.143 | 56 | 9 | 1 | 510 | 564 | 10 | 65 | 5.64e-25 | 100 |
| Msa0008880 | MtrunA17_Chr8g0346041 | 60.784 | 51 | 20 | 0 | 454 | 504 | 6 | 56 | 1.67e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008880 | AT5G11540.1 | 65.171 | 557 | 187 | 4 | 28 | 579 | 22 | 576 | 0.0 | 756 |
| Msa0008880 | AT2G46740.1 | 46.359 | 563 | 289 | 7 | 27 | 578 | 25 | 585 | 0.0 | 528 |
| Msa0008880 | AT2G46760.1 | 45.156 | 578 | 304 | 6 | 9 | 578 | 17 | 589 | 0.0 | 527 |
| Msa0008880 | AT2G46750.1 | 46.892 | 563 | 286 | 7 | 27 | 578 | 21 | 581 | 0.0 | 526 |
| Msa0008880 | AT5G56490.1 | 45.115 | 563 | 298 | 7 | 30 | 583 | 17 | 577 | 6.13e-165 | 483 |
| Msa0008880 | AT1G32300.1 | 43.523 | 579 | 310 | 8 | 9 | 578 | 3 | 573 | 9.97e-165 | 483 |
| Msa0008880 | AT5G56470.1 | 50.424 | 236 | 112 | 3 | 348 | 578 | 12 | 247 | 1.47e-80 | 254 |
Find 115 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTTTCTCTTGGAGTTT+TGG | 0.192601 | 1_1:+12839580 | Msa0008880:CDS |
| CTGTTTATAGATACGATTTC+AGG | 0.197781 | 1_1:+12841254 | Msa0008880:CDS |
| GTTTGGTGGCTGCACCTTAT+TGG | 0.236643 | 1_1:+12839378 | Msa0008880:CDS |
| TCCATCACCAGAGGCATCTA+AGG | 0.274681 | 1_1:-12841281 | None:intergenic |
| CCAAGATGTGTGGGAGGAAT+TGG | 0.278330 | 1_1:+12842279 | Msa0008880:CDS |
| ATTATTCATTGAAGTGAATA+AGG | 0.280510 | 1_1:-12842631 | None:intergenic |
| AGACATTGTAGTCCTCAAAA+AGG | 0.283988 | 1_1:+12842538 | Msa0008880:CDS |
| TTTGGTGGCTGCACCTTATT+GGG | 0.293408 | 1_1:+12839379 | Msa0008880:CDS |
| GGAGTTATGCTATGGATTAA+AGG | 0.297527 | 1_1:-12838999 | None:intergenic |
| TTTCCTTGATAGCCAATTAC+AGG | 0.297690 | 1_1:-12841944 | None:intergenic |
| TAAACAGCTGTGTGCCTTGA+TGG | 0.304478 | 1_1:-12841238 | None:intergenic |
| GCATGGGATCCAAGAATAAA+AGG | 0.315226 | 1_1:+12842019 | Msa0008880:CDS |
| TTGACTGTAACAGTTGATTC+AGG | 0.326698 | 1_1:+12839308 | Msa0008880:CDS |
| TTCACCGGCTATCCTGTAAT+TGG | 0.332527 | 1_1:+12841932 | Msa0008880:CDS |
| TGTGGCATAGACATCTATAA+TGG | 0.334215 | 1_1:+12842142 | Msa0008880:CDS |
| GTGATAAAGGCAACATTGAT+AGG | 0.342663 | 1_1:-12842748 | None:intergenic |
| GGTTTAGTCTAGGAGTAAAT+TGG | 0.363582 | 1_1:-12842258 | None:intergenic |
| CGAAGTTGTTCTTCTGTTGT+TGG | 0.372174 | 1_1:-12839122 | None:intergenic |
| CTGAGAGACCAGTATTTCAT+TGG | 0.374536 | 1_1:-12841329 | None:intergenic |
| CCAATTCCTCCCACACATCT+TGG | 0.377015 | 1_1:-12842279 | None:intergenic |
| GAGTTATGCTATGGATTAAA+GGG | 0.379012 | 1_1:-12838998 | None:intergenic |
| AAAGCGAACACACGTGATAA+AGG | 0.384174 | 1_1:-12842772 | None:intergenic |
| TTTGAAGGGTGCAGATTGTT+TGG | 0.385906 | 1_1:-12839043 | None:intergenic |
| GATGGAGTCTATGATTTCAT+TGG | 0.393398 | 1_1:+12841298 | Msa0008880:CDS |
| GATTGTTTGGTTGCATTGGA+TGG | 0.395081 | 1_1:-12839030 | None:intergenic |
| CACATACTTCCACTATTCAT+AGG | 0.396512 | 1_1:+12838969 | Msa0008880:CDS |
| ATTTCAAGCCAATGAAATAC+TGG | 0.405185 | 1_1:+12841321 | Msa0008880:CDS |
| ACGTGATAAAGGTGTGATAA+AGG | 0.406426 | 1_1:-12842761 | None:intergenic |
| TATTGGGAAGGTGTTACAAT+TGG | 0.410864 | 1_1:+12839395 | Msa0008880:CDS |
| TGCAGATTGTTTGGTTGCAT+TGG | 0.412058 | 1_1:-12839034 | None:intergenic |
| TGGGAAGGTGTTACAATTGG+AGG | 0.412609 | 1_1:+12839398 | Msa0008880:CDS |
| AGGGTTCCCTTAGATGCCTC+TGG | 0.413308 | 1_1:+12841274 | Msa0008880:CDS |
| CAGGATAGCCGGTGAAGATT+AGG | 0.414855 | 1_1:-12841925 | None:intergenic |
| ATGCTATGGATTAAAGGGTT+TGG | 0.417400 | 1_1:-12838993 | None:intergenic |
| CAGGAATTGGTAAAATTTGA+TGG | 0.425139 | 1_1:+12842478 | Msa0008880:CDS |
| ATTGTAACACCTTCCCAATA+AGG | 0.428496 | 1_1:-12839392 | None:intergenic |
| GCCATTGTTCTTCAAACCAT+TGG | 0.432966 | 1_1:-12841903 | None:intergenic |
| CCCTTAGATGCCTCTGGTGA+TGG | 0.436882 | 1_1:+12841280 | Msa0008880:CDS |
| ACAAGGAAGCTAAAGTTTGT+AGG | 0.446243 | 1_1:+12842587 | Msa0008880:CDS |
| AATGCTGCACAAGTTTCTCT+TGG | 0.447796 | 1_1:+12839572 | Msa0008880:CDS |
| GTTCCTAGTTCTGAATTTGA+AGG | 0.451250 | 1_1:+12839506 | Msa0008880:CDS |
| ATGAGTTTGCGGACATAACT+TGG | 0.456119 | 1_1:+12841212 | Msa0008880:CDS |
| ATTGGAGGTGTTATTAGTAC+TGG | 0.462333 | 1_1:+12839413 | Msa0008880:CDS |
| AGTAATATATATGAAACAAA+TGG | 0.463021 | 1_1:-12842804 | None:intergenic |
| TGCACATGGTAGTTCTTGGT+GGG | 0.463800 | 1_1:+12839436 | Msa0008880:CDS |
| TTGCATTGGATGGGAGATTG+TGG | 0.467626 | 1_1:-12839020 | None:intergenic |
| GTGCACATGGTAGTTCTTGG+TGG | 0.467984 | 1_1:+12839435 | Msa0008880:CDS |
| GAAGTTGTTCTTCTGTTGTT+GGG | 0.468307 | 1_1:-12839121 | None:intergenic |
| TAAAATCCACCACATCCAAT+AGG | 0.468753 | 1_1:-12838937 | None:intergenic |
| AAAATTTGATGGCTGTGCTT+TGG | 0.471057 | 1_1:+12842489 | Msa0008880:CDS |
| TCTCAGTCAGTTAGAGCAGC+AGG | 0.472911 | 1_1:+12841346 | Msa0008880:CDS |
| TTCAAGAAATTAACAGCCAA+TGG | 0.477497 | 1_1:+12841887 | Msa0008880:CDS |
| CTGGTGCACATGGTAGTTCT+TGG | 0.479918 | 1_1:+12839432 | Msa0008880:CDS |
| TGATTCCAACCTCAAAACTT+TGG | 0.483399 | 1_1:-12839534 | None:intergenic |
| AAAGCCTCAGAAGCATATCT+AGG | 0.484079 | 1_1:+12842184 | Msa0008880:CDS |
| TTAACAGCATCCACTACATT+GGG | 0.484270 | 1_1:+12841863 | Msa0008880:CDS |
| CACACATCTTGGTTTAGTCT+AGG | 0.490104 | 1_1:-12842268 | None:intergenic |
| TTGTCATGCAGAGGAATTGT+TGG | 0.491880 | 1_1:+12841811 | Msa0008880:intron |
| AGCCACATTGGGCTAAGAAT+AGG | 0.494478 | 1_1:+12842332 | Msa0008880:CDS |
| TATCCTGTAATTGGCTATCA+AGG | 0.495775 | 1_1:+12841941 | Msa0008880:CDS |
| AAAGGGTATTATTGTAGTCA+TGG | 0.500442 | 1_1:+12842556 | Msa0008880:CDS |
| TGTTTATAGATACGATTTCA+GGG | 0.502251 | 1_1:+12841255 | Msa0008880:CDS |
| GGGTTTGGTCCTATGAATAG+TGG | 0.508529 | 1_1:-12838978 | None:intergenic |
| GGTAGTTCTTGGTGGGGCAA+AGG | 0.509312 | 1_1:+12839443 | Msa0008880:CDS |
| CTTAACAGCATCCACTACAT+TGG | 0.511042 | 1_1:+12841862 | Msa0008880:CDS |
| AGTTCTTGGTGGGGCAAAGG+TGG | 0.513089 | 1_1:+12839446 | Msa0008880:CDS |
| GATCCACAAAATGTGTTCTC+TGG | 0.515327 | 1_1:+12842427 | Msa0008880:CDS |
| TTACTACCTATTGGATGTGG+TGG | 0.517825 | 1_1:+12838931 | Msa0008880:CDS |
| GTATGGTGCTAAGCCACATT+GGG | 0.518685 | 1_1:+12842321 | Msa0008880:CDS |
| GAAAGGGTATTGAAATGAAA+GGG | 0.525672 | 1_1:-12838883 | None:intergenic |
| TTCAAAACTCATACGGCACA+TGG | 0.531422 | 1_1:+12839060 | Msa0008880:CDS |
| TTTCTTGAATCCCAATGTAG+TGG | 0.532470 | 1_1:-12841873 | None:intergenic |
| AAAACACAGGAAACACGAAC+GGG | 0.534038 | 1_1:+12841834 | Msa0008880:CDS |
| TTCCTAGTTCTGAATTTGAA+GGG | 0.538491 | 1_1:+12839507 | Msa0008880:CDS |
| GTGGCTGCACCTTATTGGGA+AGG | 0.543644 | 1_1:+12839383 | Msa0008880:CDS |
| ATTGTTTGGTTGCATTGGAT+GGG | 0.545187 | 1_1:-12839029 | None:intergenic |
| AGTATGGTGCTAAGCCACAT+TGG | 0.547690 | 1_1:+12842320 | Msa0008880:CDS |
| GAATAGACACATCATGTGCA+TGG | 0.549476 | 1_1:+12842002 | Msa0008880:CDS |
| AAAATTGTATACCTTGGAGA+TGG | 0.550760 | 1_1:-12839606 | None:intergenic |
| AAAATGTGTTCTCTGGTGAT+TGG | 0.551456 | 1_1:+12842434 | Msa0008880:CDS |
| AACAATGGCCTAATCTTCAC+CGG | 0.551964 | 1_1:+12841917 | Msa0008880:CDS |
| TACCCTTCAAATTCAGAACT+AGG | 0.559721 | 1_1:-12839509 | None:intergenic |
| TGAAAGGGTATTGAAATGAA+AGG | 0.565709 | 1_1:-12838884 | None:intergenic |
| GGGTGATGATTGTGGTGAAA+GGG | 0.565945 | 1_1:-12838899 | None:intergenic |
| ACATAACTTGGTATCCATCA+AGG | 0.570790 | 1_1:+12841224 | Msa0008880:CDS |
| TAGTCATGGACTTGTCTACA+AGG | 0.572831 | 1_1:+12842570 | Msa0008880:CDS |
| TGCACCCTTCAAAACTCATA+CGG | 0.572982 | 1_1:+12839053 | Msa0008880:CDS |
| TGGGTGATGATTGTGGTGAA+AGG | 0.578150 | 1_1:-12838900 | None:intergenic |
| TGAAGTTATCACTTGAGCAT+AGG | 0.581177 | 1_1:+12841113 | Msa0008880:CDS |
| GCACATGGTAGTTCTTGGTG+GGG | 0.581419 | 1_1:+12839437 | Msa0008880:CDS |
| TTGTCCTAGATATGCTTCTG+AGG | 0.582676 | 1_1:-12842188 | None:intergenic |
| ATAGCCAATTACAGGATAGC+CGG | 0.586542 | 1_1:-12841936 | None:intergenic |
| TGATAAAGGCAACATTGATA+GGG | 0.586753 | 1_1:-12842747 | None:intergenic |
| GAGATTGTGGAGTTATGCTA+TGG | 0.590139 | 1_1:-12839007 | None:intergenic |
| TTTGATGGCTGTGCTTTGGA+AGG | 0.590529 | 1_1:+12842493 | Msa0008880:CDS |
| TAGACTAAACCAAGATGTGT+GGG | 0.597289 | 1_1:+12842270 | Msa0008880:CDS |
| AATAGACACATCATGTGCAT+GGG | 0.601730 | 1_1:+12842003 | Msa0008880:CDS |
| GCCAATGGTTTGAAGAACAA+TGG | 0.605151 | 1_1:+12841902 | Msa0008880:CDS |
| CACCACAATCATCACCCACA+TGG | 0.608207 | 1_1:+12838905 | Msa0008880:exon |
| GTTATTAGTACTGGTGCACA+TGG | 0.614209 | 1_1:+12839422 | Msa0008880:CDS |
| GAAAACACAGGAAACACGAA+CGG | 0.615833 | 1_1:+12841833 | Msa0008880:CDS |
| CCATCACCAGAGGCATCTAA+GGG | 0.617174 | 1_1:-12841280 | None:intergenic |
| TTCCTATTCTTAGCCCAATG+TGG | 0.624843 | 1_1:-12842334 | None:intergenic |
| CTAGACTAAACCAAGATGTG+TGG | 0.630678 | 1_1:+12842269 | Msa0008880:CDS |
| AAAGGCAACATTGATAGGGA+CGG | 0.630900 | 1_1:-12842743 | None:intergenic |
| TCTAGGACAATCAGAAGACT+CGG | 0.645708 | 1_1:+12842201 | Msa0008880:CDS |
| GAGGAATTGTTGGAAAACAC+AGG | 0.649690 | 1_1:+12841821 | Msa0008880:intron |
| ACTAAACCAAGATGTGTGGG+AGG | 0.655927 | 1_1:+12842273 | Msa0008880:CDS |
| AGCCATGTGGGTGATGATTG+TGG | 0.657872 | 1_1:-12838907 | None:intergenic |
| ACTTGTGCAGCATTAAACAA+AGG | 0.660665 | 1_1:-12839563 | None:intergenic |
| AATATATATGAAACAAATGG+AGG | 0.660802 | 1_1:-12842801 | None:intergenic |
| AATAGGTAGTAAAAGCCATG+TGG | 0.663153 | 1_1:-12838920 | None:intergenic |
| ATCATAGACTCCATCACCAG+AGG | 0.673916 | 1_1:-12841290 | None:intergenic |
| ATAGGTAGTAAAAGCCATGT+GGG | 0.678509 | 1_1:-12838919 | None:intergenic |
| CATAACATTCAATTTCACTG+AGG | 0.730952 | 1_1:+12841147 | Msa0008880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTACAGTTTTAAA+TGG | - | chr1_1:12839716-12839735 | None:intergenic | 10.0% |
| !! | ATAATTCTTGATATCATTAT+AGG | - | chr1_1:12839744-12839763 | None:intergenic | 15.0% |
| !! | ATAACCAATTAAAGATAATA+AGG | + | chr1_1:12841431-12841450 | Msa0008880:intron | 15.0% |
| !! | AAAACCTTATTATCTTTAAT+TGG | - | chr1_1:12841438-12841457 | None:intergenic | 15.0% |
| !!! | TTTTTTAAAAACTTCGAAAA+GGG | + | chr1_1:12841516-12841535 | Msa0008880:intron | 15.0% |
| !!! | TTTTTGGTATTTTGAAAAAT+CGG | - | chr1_1:12841712-12841731 | None:intergenic | 15.0% |
| !! | TCAATAAAAAGATTAAAGTT+AGG | - | chr1_1:12842391-12842410 | None:intergenic | 15.0% |
| !!! | AATTTTGAAAGTTCTCTTAA+AGG | - | chr1_1:12839654-12839673 | None:intergenic | 20.0% |
| !! | ATTGGATATTGTTCAAATAT+CGG | + | chr1_1:12840323-12840342 | Msa0008880:intron | 20.0% |
| !! | TTTAAGAGAGTTTATTATTG+AGG | + | chr1_1:12840598-12840617 | Msa0008880:intron | 20.0% |
| !! | TTAAGAGAGTTTATTATTGA+GGG | + | chr1_1:12840599-12840618 | Msa0008880:intron | 20.0% |
| !! | ATGTAATTACTGTAATTAAG+AGG | - | chr1_1:12840932-12840951 | None:intergenic | 20.0% |
| !! | TATTTGTAAAGTAACTTCTT+CGG | - | chr1_1:12840988-12841007 | None:intergenic | 20.0% |
| !! | ATTGTTAAATTAATGATGTC+AGG | + | chr1_1:12841090-12841109 | Msa0008880:intron | 20.0% |
| !! | ATTATTGTCATGTTATTCTT+AGG | + | chr1_1:12841403-12841422 | Msa0008880:intron | 20.0% |
| !!! | TTCGAAGTTTTTAAAAAAGT+TGG | - | chr1_1:12841514-12841533 | None:intergenic | 20.0% |
| !!! | CTTTTTTAAAAACTTCGAAA+AGG | + | chr1_1:12841515-12841534 | Msa0008880:intron | 20.0% |
| !!! | ATTTGACTTTATAACTTCAA+GGG | - | chr1_1:12841609-12841628 | None:intergenic | 20.0% |
| !!! | AATTTGACTTTATAACTTCA+AGG | - | chr1_1:12841610-12841629 | None:intergenic | 20.0% |
| !! | CAATAAATAAACTAAAGACA+AGG | + | chr1_1:12841661-12841680 | Msa0008880:intron | 20.0% |
| !!! | ATAAATCCACAAAATTTTTG+TGG | + | chr1_1:12842124-12842143 | Msa0008880:CDS | 20.0% |
| !! | TATTGAAGCTAAAAAACAAA+TGG | + | chr1_1:12842405-12842424 | Msa0008880:CDS | 20.0% |
| !! | ATTATTCATTGAAGTGAATA+AGG | - | chr1_1:12842634-12842653 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTAAGAAATGAAG+AGG | + | chr1_1:12842712-12842731 | Msa0008880:three_prime_UTR | 20.0% |
| !! | ATGAAAGGGATTATGATTTT+TGG | - | chr1_1:12838872-12838891 | None:intergenic | 25.0% |
| !! | TGAGAATTTTGTGACAATTT+TGG | - | chr1_1:12839186-12839205 | None:intergenic | 25.0% |
| !!! | CATGATTATTGTTTTGTTGT+GGG | - | chr1_1:12839232-12839251 | None:intergenic | 25.0% |
| ! | ATTGATGAAGTTGAGAAAAA+TGG | + | chr1_1:12839350-12839369 | Msa0008880:CDS | 25.0% |
| !! | TGAGAAAAATGGATTTAGTT+TGG | + | chr1_1:12839361-12839380 | Msa0008880:CDS | 25.0% |
| ! | GAATTGAAAATTGTATACCT+TGG | - | chr1_1:12839615-12839634 | None:intergenic | 25.0% |
| !! | CCTAAAAAATCAGTTTGTTT+CGG | - | chr1_1:12839973-12839992 | None:intergenic | 25.0% |
| !!! | CGAAACAAACTGATTTTTTA+GGG | + | chr1_1:12839971-12839990 | Msa0008880:intron | 25.0% |
| !!! | GAAACAAACTGATTTTTTAG+GGG | + | chr1_1:12839972-12839991 | Msa0008880:intron | 25.0% |
| ! | GGATTGATAAAGTTTACATA+TGG | - | chr1_1:12840535-12840554 | None:intergenic | 25.0% |
| ! | AGAAAAATTGGTAAATTGGT+TGG | - | chr1_1:12840673-12840692 | None:intergenic | 25.0% |
| ! | CAACAGAAAAATTGGTAAAT+TGG | - | chr1_1:12840677-12840696 | None:intergenic | 25.0% |
| ! | AAGATAAGCAACAGAAAAAT+TGG | - | chr1_1:12840685-12840704 | None:intergenic | 25.0% |
| ! | GTAATTACATAGTACTATGT+AGG | + | chr1_1:12840942-12840961 | Msa0008880:intron | 25.0% |
| ! | TGTTTATAGATACGATTTCA+GGG | + | chr1_1:12841255-12841274 | Msa0008880:CDS | 25.0% |
| !!! | AGATAATAAGGTTTTGTTAC+TGG | + | chr1_1:12841443-12841462 | Msa0008880:intron | 25.0% |
| ! | TTGGTTATTACTTACTAAGA+AGG | - | chr1_1:12841495-12841514 | None:intergenic | 25.0% |
| !! | GATCATTTTACAATTGTCTT+CGG | + | chr1_1:12841566-12841585 | Msa0008880:intron | 25.0% |
| ! | CAACGTTGAAGTTATATTAT+AGG | - | chr1_1:12841794-12841813 | None:intergenic | 25.0% |
| !! | AAGAACAATCCTTTTATTCT+TGG | - | chr1_1:12842031-12842050 | None:intergenic | 25.0% |
| !! | GAAAGGGTATTGAAATGAAA+GGG | - | chr1_1:12838886-12838905 | None:intergenic | 30.0% |
| !! | TGAAAGGGTATTGAAATGAA+AGG | - | chr1_1:12838887-12838906 | None:intergenic | 30.0% |
| ! | GAGTTATGCTATGGATTAAA+GGG | - | chr1_1:12839001-12839020 | None:intergenic | 30.0% |
| !! | TGAGAGCATAACAATTTTTG+CGG | - | chr1_1:12839091-12839110 | None:intergenic | 30.0% |
| !!! | AAGGTTGTTTTGAACAACAT+AGG | - | chr1_1:12839159-12839178 | None:intergenic | 30.0% |
| !! | GCATGATTATTGTTTTGTTG+TGG | - | chr1_1:12839233-12839252 | None:intergenic | 30.0% |
| !! | GAAAAATGGATTTAGTTTGG+TGG | + | chr1_1:12839364-12839383 | Msa0008880:CDS | 30.0% |
| ! | TGCTTTTCATGATCATGTTT+TGG | + | chr1_1:12839469-12839488 | Msa0008880:CDS | 30.0% |
| ! | GCTTTTCATGATCATGTTTT+GGG | + | chr1_1:12839470-12839489 | Msa0008880:CDS | 30.0% |
| !! | TTCCTAGTTCTGAATTTGAA+GGG | + | chr1_1:12839507-12839526 | Msa0008880:CDS | 30.0% |
| AAAATTGTATACCTTGGAGA+TGG | - | chr1_1:12839609-12839628 | None:intergenic | 30.0% | |
| TGAAAGTTCTCTTAAAGGAA+TGG | - | chr1_1:12839649-12839668 | None:intergenic | 30.0% | |
| ! | CAGAAAGACTCAAAAAGTAT+GGG | - | chr1_1:12839817-12839836 | None:intergenic | 30.0% |
| GGTGGTAATTATTTCAGAAT+AGG | - | chr1_1:12839952-12839971 | None:intergenic | 30.0% | |
| ! | AAAAAATCAGTTTGTTTCGG+TGG | - | chr1_1:12839970-12839989 | None:intergenic | 30.0% |
| !!! | CCGAAACAAACTGATTTTTT+AGG | + | chr1_1:12839970-12839989 | Msa0008880:intron | 30.0% |
| !!! | TAGAATTTTTTACAGCAGCT+CGG | - | chr1_1:12840018-12840037 | None:intergenic | 30.0% |
| TTATTGCAAGACCTATAGTT+TGG | - | chr1_1:12840356-12840375 | None:intergenic | 30.0% | |
| TAGGTCTTGCAATAATAATG+TGG | + | chr1_1:12840361-12840380 | Msa0008880:intron | 30.0% | |
| AAAAAATGCTCTGATTGGAA+GGG | - | chr1_1:12840501-12840520 | None:intergenic | 30.0% | |
| ACATGCATTTAATGATCTCT+TGG | - | chr1_1:12840630-12840649 | None:intergenic | 30.0% | |
| TCAATCCATTTCCTTCAAAA+TGG | - | chr1_1:12840722-12840741 | None:intergenic | 30.0% | |
| ! | ATTAATCGACTTCTTGAAGA+CGG | - | chr1_1:12840886-12840905 | None:intergenic | 30.0% |
| ! | TAATTTTTCACCTCTTAGTG+AGG | + | chr1_1:12841028-12841047 | Msa0008880:intron | 30.0% |
| ! | AATTTTTCACCTCTTAGTGA+GGG | + | chr1_1:12841029-12841048 | Msa0008880:intron | 30.0% |
| CATAACATTCAATTTCACTG+AGG | + | chr1_1:12841147-12841166 | Msa0008880:CDS | 30.0% | |
| ! | TGCAAAAAAGTATGAGTTTG+CGG | + | chr1_1:12841201-12841220 | Msa0008880:CDS | 30.0% |
| CTGTTTATAGATACGATTTC+AGG | + | chr1_1:12841254-12841273 | Msa0008880:CDS | 30.0% | |
| ATTTCAAGCCAATGAAATAC+TGG | + | chr1_1:12841321-12841340 | Msa0008880:CDS | 30.0% | |
| ! | ATTTTACAATTGTCTTCGGA+GGG | + | chr1_1:12841570-12841589 | Msa0008880:intron | 30.0% |
| ATTGTTACTCCATAAGATCT+CGG | - | chr1_1:12841645-12841664 | None:intergenic | 30.0% | |
| TTCAAGAAATTAACAGCCAA+TGG | + | chr1_1:12841887-12841906 | Msa0008880:CDS | 30.0% | |
| CAAGGAAAAATTCAAACTTC+AGG | + | chr1_1:12841959-12841978 | Msa0008880:CDS | 30.0% | |
| ! | ATTTTCCCTGCTTCAAAATT+TGG | + | chr1_1:12842067-12842086 | Msa0008880:CDS | 30.0% |
| !!! | AATCTCCAAATTTTGAAGCA+GGG | - | chr1_1:12842075-12842094 | None:intergenic | 30.0% |
| !!! | AAATCTCCAAATTTTGAAGC+AGG | - | chr1_1:12842076-12842095 | None:intergenic | 30.0% |
| ! | TCTATGCCACAAAAATTTTG+TGG | - | chr1_1:12842133-12842152 | None:intergenic | 30.0% |
| !!! | CAGATTGCATTTTTCAAGTA+TGG | + | chr1_1:12842304-12842323 | Msa0008880:CDS | 30.0% |
| CAGGAATTGGTAAAATTTGA+TGG | + | chr1_1:12842478-12842497 | Msa0008880:CDS | 30.0% | |
| ! | CTACAATAATACCCTTTTTG+AGG | - | chr1_1:12842553-12842572 | None:intergenic | 30.0% |
| !! | AAAGGGTATTATTGTAGTCA+TGG | + | chr1_1:12842556-12842575 | Msa0008880:CDS | 30.0% |
| TGATAAAGGCAACATTGATA+GGG | - | chr1_1:12842750-12842769 | None:intergenic | 30.0% | |
| ATAGGTAGTAAAAGCCATGT+GGG | - | chr1_1:12838922-12838941 | None:intergenic | 35.0% | |
| AATAGGTAGTAAAAGCCATG+TGG | - | chr1_1:12838923-12838942 | None:intergenic | 35.0% | |
| ! | ACATGGCTTTTACTACCTAT+TGG | + | chr1_1:12838922-12838941 | Msa0008880:exon | 35.0% |
| ! | CTTTTACTACCTATTGGATG+TGG | + | chr1_1:12838928-12838947 | Msa0008880:CDS | 35.0% |
| TAAAATCCACCACATCCAAT+AGG | - | chr1_1:12838940-12838959 | None:intergenic | 35.0% | |
| CACATACTTCCACTATTCAT+AGG | + | chr1_1:12838969-12838988 | Msa0008880:CDS | 35.0% | |
| ! | ATGCTATGGATTAAAGGGTT+TGG | - | chr1_1:12838996-12839015 | None:intergenic | 35.0% |
| ! | GGAGTTATGCTATGGATTAA+AGG | - | chr1_1:12839002-12839021 | None:intergenic | 35.0% |
| ATTGTTTGGTTGCATTGGAT+GGG | - | chr1_1:12839032-12839051 | None:intergenic | 35.0% | |
| GAAGTTGTTCTTCTGTTGTT+GGG | - | chr1_1:12839124-12839143 | None:intergenic | 35.0% | |
| !!! | TTGTGACAATTTTGGCTGTA+AGG | - | chr1_1:12839178-12839197 | None:intergenic | 35.0% |
| ! | TTGACTGTAACAGTTGATTC+AGG | + | chr1_1:12839308-12839327 | Msa0008880:CDS | 35.0% |
| ATTGTAACACCTTCCCAATA+AGG | - | chr1_1:12839395-12839414 | None:intergenic | 35.0% | |
| !! | TATTGGGAAGGTGTTACAAT+TGG | + | chr1_1:12839395-12839414 | Msa0008880:CDS | 35.0% |
| !! | ATTGGAGGTGTTATTAGTAC+TGG | + | chr1_1:12839413-12839432 | Msa0008880:CDS | 35.0% |
| !! | GTTCCTAGTTCTGAATTTGA+AGG | + | chr1_1:12839506-12839525 | Msa0008880:CDS | 35.0% |
| TACCCTTCAAATTCAGAACT+AGG | - | chr1_1:12839512-12839531 | None:intergenic | 35.0% | |
| TGATTCCAACCTCAAAACTT+TGG | - | chr1_1:12839537-12839556 | None:intergenic | 35.0% | |
| ACTTGTGCAGCATTAAACAA+AGG | - | chr1_1:12839566-12839585 | None:intergenic | 35.0% | |
| ! | ACAAGTTTCTCTTGGAGTTT+TGG | + | chr1_1:12839580-12839599 | Msa0008880:CDS | 35.0% |
| ! | CAAGTTTCTCTTGGAGTTTT+GGG | + | chr1_1:12839581-12839600 | Msa0008880:CDS | 35.0% |
| GCAGAAAGACTCAAAAAGTA+TGG | - | chr1_1:12839818-12839837 | None:intergenic | 35.0% | |
| ! | GATAGTGTCTTTTGCTTTGA+CGG | - | chr1_1:12839873-12839892 | None:intergenic | 35.0% |
| AAGCAAAAGACACTATCGTT+TGG | + | chr1_1:12839876-12839895 | Msa0008880:intron | 35.0% | |
| TTCCAATTCGGGTAGAATTA+TGG | - | chr1_1:12839928-12839947 | None:intergenic | 35.0% | |
| TTCAGAATAGGCTTCCAATT+CGG | - | chr1_1:12839940-12839959 | None:intergenic | 35.0% | |
| CTGAGATTCTGAGTTATACT+AGG | - | chr1_1:12840180-12840199 | None:intergenic | 35.0% | |
| GAGACTATACTGTAAAGGAT+TGG | + | chr1_1:12840305-12840324 | Msa0008880:intron | 35.0% | |
| GAAAAAATGCTCTGATTGGA+AGG | - | chr1_1:12840502-12840521 | None:intergenic | 35.0% | |
| !!! | TCCAATCAGAGCATTTTTTC+TGG | + | chr1_1:12840502-12840521 | Msa0008880:intron | 35.0% |
| TCCAGAAAAAATGCTCTGAT+TGG | - | chr1_1:12840506-12840525 | None:intergenic | 35.0% | |
| !!! | AGAGCATTTTTTCTGGAACT+GGG | + | chr1_1:12840509-12840528 | Msa0008880:intron | 35.0% |
| !! | TTTTGGGTGACAATGCAATT+TGG | - | chr1_1:12840561-12840580 | None:intergenic | 35.0% |
| ! | CATTGTCAACACCATTTTGA+AGG | + | chr1_1:12840708-12840727 | Msa0008880:intron | 35.0% |
| !! | CAACACCATTTTGAAGGAAA+TGG | + | chr1_1:12840714-12840733 | Msa0008880:intron | 35.0% |
| !! | AAATGGATTGACTACCTTTG+TGG | + | chr1_1:12840731-12840750 | Msa0008880:intron | 35.0% |
| CCAAAGAATACACTAAACTG+CGG | - | chr1_1:12840768-12840787 | None:intergenic | 35.0% | |
| TGAAGTTATCACTTGAGCAT+AGG | + | chr1_1:12841113-12841132 | Msa0008880:CDS | 35.0% | |
| ACATAACTTGGTATCCATCA+AGG | + | chr1_1:12841224-12841243 | Msa0008880:CDS | 35.0% | |
| GATGGAGTCTATGATTTCAT+TGG | + | chr1_1:12841298-12841317 | Msa0008880:CDS | 35.0% | |
| ! | CATTTTACAATTGTCTTCGG+AGG | + | chr1_1:12841569-12841588 | Msa0008880:intron | 35.0% |
| TGACTTTATAACTTCAAGGG+AGG | - | chr1_1:12841606-12841625 | None:intergenic | 35.0% | |
| TAAATTGCAGATGTGCAGTT+AGG | - | chr1_1:12841741-12841760 | None:intergenic | 35.0% | |
| TTAACAGCATCCACTACATT+GGG | + | chr1_1:12841863-12841882 | Msa0008880:CDS | 35.0% | |
| TTTCTTGAATCCCAATGTAG+TGG | - | chr1_1:12841876-12841895 | None:intergenic | 35.0% | |
| TATCCTGTAATTGGCTATCA+AGG | + | chr1_1:12841941-12841960 | Msa0008880:CDS | 35.0% | |
| ! | TTTCCTTGATAGCCAATTAC+AGG | - | chr1_1:12841947-12841966 | None:intergenic | 35.0% |
| AATAGACACATCATGTGCAT+GGG | + | chr1_1:12842003-12842022 | Msa0008880:CDS | 35.0% | |
| TGTGGCATAGACATCTATAA+TGG | + | chr1_1:12842142-12842161 | Msa0008880:CDS | 35.0% | |
| GGTTTAGTCTAGGAGTAAAT+TGG | - | chr1_1:12842261-12842280 | None:intergenic | 35.0% | |
| TAGACTAAACCAAGATGTGT+GGG | + | chr1_1:12842270-12842289 | Msa0008880:CDS | 35.0% | |
| AAAATGTGTTCTCTGGTGAT+TGG | + | chr1_1:12842434-12842453 | Msa0008880:CDS | 35.0% | |
| ! | TGGTCAGATGAGATTTTGTA+TGG | + | chr1_1:12842454-12842473 | Msa0008880:CDS | 35.0% |
| ! | GGTCAGATGAGATTTTGTAT+GGG | + | chr1_1:12842455-12842474 | Msa0008880:CDS | 35.0% |
| ! | AAAATTTGATGGCTGTGCTT+TGG | + | chr1_1:12842489-12842508 | Msa0008880:CDS | 35.0% |
| AGACATTGTAGTCCTCAAAA+AGG | + | chr1_1:12842538-12842557 | Msa0008880:CDS | 35.0% | |
| GACATTGTAGTCCTCAAAAA+GGG | + | chr1_1:12842539-12842558 | Msa0008880:CDS | 35.0% | |
| ACAAGGAAGCTAAAGTTTGT+AGG | + | chr1_1:12842587-12842606 | Msa0008880:CDS | 35.0% | |
| GTGATAAAGGCAACATTGAT+AGG | - | chr1_1:12842751-12842770 | None:intergenic | 35.0% | |
| ! | ACGTGATAAAGGTGTGATAA+AGG | - | chr1_1:12842764-12842783 | None:intergenic | 35.0% |
| TTACTACCTATTGGATGTGG+TGG | + | chr1_1:12838931-12838950 | Msa0008880:CDS | 40.0% | |
| GAGATTGTGGAGTTATGCTA+TGG | - | chr1_1:12839010-12839029 | None:intergenic | 40.0% | |
| GATTGTTTGGTTGCATTGGA+TGG | - | chr1_1:12839033-12839052 | None:intergenic | 40.0% | |
| TGCAGATTGTTTGGTTGCAT+TGG | - | chr1_1:12839037-12839056 | None:intergenic | 40.0% | |
| ! | TTTGAAGGGTGCAGATTGTT+TGG | - | chr1_1:12839046-12839065 | None:intergenic | 40.0% |
| TGCACCCTTCAAAACTCATA+CGG | + | chr1_1:12839053-12839072 | Msa0008880:CDS | 40.0% | |
| !!! | TGTGCCGTATGAGTTTTGAA+GGG | - | chr1_1:12839060-12839079 | None:intergenic | 40.0% |
| !! | ATGTGCCGTATGAGTTTTGA+AGG | - | chr1_1:12839061-12839080 | None:intergenic | 40.0% |
| TTCAAAACTCATACGGCACA+TGG | + | chr1_1:12839060-12839079 | Msa0008880:CDS | 40.0% | |
| CGAAGTTGTTCTTCTGTTGT+TGG | - | chr1_1:12839125-12839144 | None:intergenic | 40.0% | |
| ! | GTTGTGGGCATGATAGTTTT+CGG | - | chr1_1:12839217-12839236 | None:intergenic | 40.0% |
| !! | GTTATTAGTACTGGTGCACA+TGG | + | chr1_1:12839422-12839441 | Msa0008880:CDS | 40.0% |
| !! | AAGGGTATGCCAAAGTTTTG+AGG | + | chr1_1:12839525-12839544 | Msa0008880:CDS | 40.0% |
| !!! | GTATGCCAAAGTTTTGAGGT+TGG | + | chr1_1:12839529-12839548 | Msa0008880:CDS | 40.0% |
| AATGCTGCACAAGTTTCTCT+TGG | + | chr1_1:12839572-12839591 | Msa0008880:CDS | 40.0% | |
| TATGGAGGTGAGGAGTTAAT+CGG | - | chr1_1:12839910-12839929 | None:intergenic | 40.0% | |
| CAATTCGGGTAGAATTATGG+AGG | - | chr1_1:12839925-12839944 | None:intergenic | 40.0% | |
| CTCCATAATTCTACCCGAAT+TGG | + | chr1_1:12839923-12839942 | Msa0008880:intron | 40.0% | |
| TCAGAATAGGCTTCCAATTC+GGG | - | chr1_1:12839939-12839958 | None:intergenic | 40.0% | |
| !! | GTTATACTAGGTGTTGACAG+AGG | - | chr1_1:12840168-12840187 | None:intergenic | 40.0% |
| ! | AATTTTGTCCAGTGAGGAAG+AGG | - | chr1_1:12840210-12840229 | None:intergenic | 40.0% |
| ATGCAGAAATTTACTGCAGC+TGG | - | chr1_1:12840266-12840285 | None:intergenic | 40.0% | |
| TACAGTATAGTCTCCGACAA+AGG | - | chr1_1:12840299-12840318 | None:intergenic | 40.0% | |
| TGTCGGAGACTATACTGTAA+AGG | + | chr1_1:12840300-12840319 | Msa0008880:intron | 40.0% | |
| ! | TCGGTTGCTTTCCAAACTAT+AGG | + | chr1_1:12840342-12840361 | Msa0008880:intron | 40.0% |
| AAAGCAGTCAGAAGAGTAGT+TGG | - | chr1_1:12840393-12840412 | None:intergenic | 40.0% | |
| CGTCGGAGGTAGAATAAAAT+TGG | - | chr1_1:12840422-12840441 | None:intergenic | 40.0% | |
| TATGGTCAGACTCAATTTGG+TGG | - | chr1_1:12840462-12840481 | None:intergenic | 40.0% | |
| GGTTATGGTCAGACTCAATT+TGG | - | chr1_1:12840465-12840484 | None:intergenic | 40.0% | |
| GGATGAATACGGTAAGGTTA+TGG | - | chr1_1:12840480-12840499 | None:intergenic | 40.0% | |
| CTGATTGGAAGGGATGAATA+CGG | - | chr1_1:12840491-12840510 | None:intergenic | 40.0% | |
| !!! | CAGAGCATTTTTTCTGGAAC+TGG | + | chr1_1:12840508-12840527 | Msa0008880:intron | 40.0% |
| CCGCAGTTTAGTGTATTCTT+TGG | + | chr1_1:12840765-12840784 | Msa0008880:intron | 40.0% | |
| AACTTCTTCGGTACGTGTAA+AGG | - | chr1_1:12840976-12840995 | None:intergenic | 40.0% | |
| ATGAGTTTGCGGACATAACT+TGG | + | chr1_1:12841212-12841231 | Msa0008880:CDS | 40.0% | |
| CTGAGAGACCAGTATTTCAT+TGG | - | chr1_1:12841332-12841351 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTGTTACTGGCTTG+TGG | + | chr1_1:12841450-12841469 | Msa0008880:intron | 40.0% |
| ! | GAAGGTACAATATGACAGTG+AGG | - | chr1_1:12841477-12841496 | None:intergenic | 40.0% |
| ! | TGCAGTTAGGTCGCAATTTT+TGG | - | chr1_1:12841728-12841747 | None:intergenic | 40.0% |
| TTGTCATGCAGAGGAATTGT+TGG | + | chr1_1:12841811-12841830 | Msa0008880:intron | 40.0% | |
| GAGGAATTGTTGGAAAACAC+AGG | + | chr1_1:12841821-12841840 | Msa0008880:intron | 40.0% | |
| GAAAACACAGGAAACACGAA+CGG | + | chr1_1:12841833-12841852 | Msa0008880:CDS | 40.0% | |
| AAAACACAGGAAACACGAAC+GGG | + | chr1_1:12841834-12841853 | Msa0008880:CDS | 40.0% | |
| CTTAACAGCATCCACTACAT+TGG | + | chr1_1:12841862-12841881 | Msa0008880:CDS | 40.0% | |
| GCCAATGGTTTGAAGAACAA+TGG | + | chr1_1:12841902-12841921 | Msa0008880:CDS | 40.0% | |
| GCCATTGTTCTTCAAACCAT+TGG | - | chr1_1:12841906-12841925 | None:intergenic | 40.0% | |
| AACAATGGCCTAATCTTCAC+CGG | + | chr1_1:12841917-12841936 | Msa0008880:CDS | 40.0% | |
| ATAGCCAATTACAGGATAGC+CGG | - | chr1_1:12841939-12841958 | None:intergenic | 40.0% | |
| GAATAGACACATCATGTGCA+TGG | + | chr1_1:12842002-12842021 | Msa0008880:CDS | 40.0% | |
| GCATGGGATCCAAGAATAAA+AGG | + | chr1_1:12842019-12842038 | Msa0008880:CDS | 40.0% | |
| ! | AAAGCCTCAGAAGCATATCT+AGG | + | chr1_1:12842184-12842203 | Msa0008880:CDS | 40.0% |
| TTGTCCTAGATATGCTTCTG+AGG | - | chr1_1:12842191-12842210 | None:intergenic | 40.0% | |
| ! | TCTAGGACAATCAGAAGACT+CGG | + | chr1_1:12842201-12842220 | Msa0008880:CDS | 40.0% |
| CACACATCTTGGTTTAGTCT+AGG | - | chr1_1:12842271-12842290 | None:intergenic | 40.0% | |
| CTAGACTAAACCAAGATGTG+TGG | + | chr1_1:12842269-12842288 | Msa0008880:CDS | 40.0% | |
| TTCCTATTCTTAGCCCAATG+TGG | - | chr1_1:12842337-12842356 | None:intergenic | 40.0% | |
| GATCCACAAAATGTGTTCTC+TGG | + | chr1_1:12842427-12842446 | Msa0008880:CDS | 40.0% | |
| ! | TCACCAGAGAACACATTTTG+TGG | - | chr1_1:12842433-12842452 | None:intergenic | 40.0% |
| ! | AGATGAGATTTTGTATGGGC+AGG | + | chr1_1:12842459-12842478 | Msa0008880:CDS | 40.0% |
| ! | GATTTTGTATGGGCAGGAAT+TGG | + | chr1_1:12842465-12842484 | Msa0008880:CDS | 40.0% |
| TAGTCATGGACTTGTCTACA+AGG | + | chr1_1:12842570-12842589 | Msa0008880:CDS | 40.0% | |
| AAAGGCAACATTGATAGGGA+CGG | - | chr1_1:12842746-12842765 | None:intergenic | 40.0% | |
| AAAGCGAACACACGTGATAA+AGG | - | chr1_1:12842775-12842794 | None:intergenic | 40.0% | |
| GGGTGATGATTGTGGTGAAA+GGG | - | chr1_1:12838902-12838921 | None:intergenic | 45.0% | |
| TGGGTGATGATTGTGGTGAA+AGG | - | chr1_1:12838903-12838922 | None:intergenic | 45.0% | |
| ! | GGGTTTGGTCCTATGAATAG+TGG | - | chr1_1:12838981-12839000 | None:intergenic | 45.0% |
| TTGCATTGGATGGGAGATTG+TGG | - | chr1_1:12839023-12839042 | None:intergenic | 45.0% | |
| ! | TTTGGTGGCTGCACCTTATT+GGG | + | chr1_1:12839379-12839398 | Msa0008880:CDS | 45.0% |
| !! | TGGGAAGGTGTTACAATTGG+AGG | + | chr1_1:12839398-12839417 | Msa0008880:CDS | 45.0% |
| TGCACATGGTAGTTCTTGGT+GGG | + | chr1_1:12839436-12839455 | Msa0008880:CDS | 45.0% | |
| AGATGTGGTCAAGTAGCTTC+TGG | - | chr1_1:12840123-12840142 | None:intergenic | 45.0% | |
| ! | GTGCAGAATTTTGTCCAGTG+AGG | - | chr1_1:12840216-12840235 | None:intergenic | 45.0% |
| GTCAGAAGAGTAGTTGGAGA+TGG | - | chr1_1:12840387-12840406 | None:intergenic | 45.0% | |
| TGGAAGGGATGAATACGGTA+AGG | - | chr1_1:12840486-12840505 | None:intergenic | 45.0% | |
| GGTGACAATGCAATTTGGTC+AGG | - | chr1_1:12840556-12840575 | None:intergenic | 45.0% | |
| TGGATTGACTACCTTTGTGG+TGG | + | chr1_1:12840734-12840753 | Msa0008880:intron | 45.0% | |
| GGATTGACTACCTTTGTGGT+GGG | + | chr1_1:12840735-12840754 | Msa0008880:intron | 45.0% | |
| TGCTAACATCCCTCACTAAG+AGG | - | chr1_1:12841041-12841060 | None:intergenic | 45.0% | |
| TAAACAGCTGTGTGCCTTGA+TGG | - | chr1_1:12841241-12841260 | None:intergenic | 45.0% | |
| ATCATAGACTCCATCACCAG+AGG | - | chr1_1:12841293-12841312 | None:intergenic | 45.0% | |
| ACTACTGAGCCGAGATCTTA+TGG | + | chr1_1:12841633-12841652 | Msa0008880:intron | 45.0% | |
| ACTTCAACGTTGTCATGCAG+AGG | + | chr1_1:12841802-12841821 | Msa0008880:intron | 45.0% | |
| ! | TTCACCGGCTATCCTGTAAT+TGG | + | chr1_1:12841932-12841951 | Msa0008880:CDS | 45.0% |
| ACTAAACCAAGATGTGTGGG+AGG | + | chr1_1:12842273-12842292 | Msa0008880:CDS | 45.0% | |
| ! | AGTATGGTGCTAAGCCACAT+TGG | + | chr1_1:12842320-12842339 | Msa0008880:CDS | 45.0% |
| ! | GTATGGTGCTAAGCCACATT+GGG | + | chr1_1:12842321-12842340 | Msa0008880:CDS | 45.0% |
| AGCCACATTGGGCTAAGAAT+AGG | + | chr1_1:12842332-12842351 | Msa0008880:CDS | 45.0% | |
| ! | TTTGATGGCTGTGCTTTGGA+AGG | + | chr1_1:12842493-12842512 | Msa0008880:CDS | 45.0% |
| !!! | TTTAAATTTTATAAAGTTTT+GGG | - | chr1_1:12840577-12840596 | None:intergenic | 5.0% |
| !!! | TTTTAAATTTTATAAAGTTT+TGG | - | chr1_1:12840578-12840597 | None:intergenic | 5.0% |
| CACCACAATCATCACCCACA+TGG | + | chr1_1:12838905-12838924 | Msa0008880:exon | 50.0% | |
| AGCCATGTGGGTGATGATTG+TGG | - | chr1_1:12838910-12838929 | None:intergenic | 50.0% | |
| ! | GTTTGGTGGCTGCACCTTAT+TGG | + | chr1_1:12839378-12839397 | Msa0008880:CDS | 50.0% |
| CTGGTGCACATGGTAGTTCT+TGG | + | chr1_1:12839432-12839451 | Msa0008880:CDS | 50.0% | |
| GTGCACATGGTAGTTCTTGG+TGG | + | chr1_1:12839435-12839454 | Msa0008880:CDS | 50.0% | |
| GCACATGGTAGTTCTTGGTG+GGG | + | chr1_1:12839437-12839456 | Msa0008880:CDS | 50.0% | |
| !!! | AGTTTTGGGTGCCATCTCCA+AGG | + | chr1_1:12839595-12839614 | Msa0008880:CDS | 50.0% |
| CGGGTAGAATTATGGAGGTG+AGG | - | chr1_1:12839920-12839939 | None:intergenic | 50.0% | |
| GGACGAAGGCAAAGGATTCT+CGG | - | chr1_1:12840102-12840121 | None:intergenic | 50.0% | |
| TAGCTTCTGGACGAAGGCAA+AGG | - | chr1_1:12840110-12840129 | None:intergenic | 50.0% | |
| GTCAAGTAGCTTCTGGACGA+AGG | - | chr1_1:12840116-12840135 | None:intergenic | 50.0% | |
| AGAGGTTCAGTTGCAGGAAG+GGG | - | chr1_1:12840150-12840169 | None:intergenic | 50.0% | |
| CAGAGGTTCAGTTGCAGGAA+GGG | - | chr1_1:12840151-12840170 | None:intergenic | 50.0% | |
| ACAGAGGTTCAGTTGCAGGA+AGG | - | chr1_1:12840152-12840171 | None:intergenic | 50.0% | |
| GTTGACAGAGGTTCAGTTGC+AGG | - | chr1_1:12840156-12840175 | None:intergenic | 50.0% | |
| GATTCACTCCTCTTCCTCAC+TGG | + | chr1_1:12840199-12840218 | Msa0008880:intron | 50.0% | |
| CAGCTGGTACACAGCAGAAA+TGG | - | chr1_1:12840250-12840269 | None:intergenic | 50.0% | |
| CATGAGTGATGCGCCTTTGT+CGG | + | chr1_1:12840283-12840302 | Msa0008880:intron | 50.0% | |
| !! | CAATTTGGTGGTGCTCCGAT+TGG | - | chr1_1:12840450-12840469 | None:intergenic | 50.0% |
| !! | CCATCACCAGAGGCATCTAA+GGG | - | chr1_1:12841283-12841302 | None:intergenic | 50.0% |
| !! | TCCATCACCAGAGGCATCTA+AGG | - | chr1_1:12841284-12841303 | None:intergenic | 50.0% |
| TCTCAGTCAGTTAGAGCAGC+AGG | + | chr1_1:12841346-12841365 | Msa0008880:CDS | 50.0% | |
| CAGGATAGCCGGTGAAGATT+AGG | - | chr1_1:12841928-12841947 | None:intergenic | 50.0% | |
| CCAATTCCTCCCACACATCT+TGG | - | chr1_1:12842282-12842301 | None:intergenic | 50.0% | |
| CCAAGATGTGTGGGAGGAAT+TGG | + | chr1_1:12842279-12842298 | Msa0008880:CDS | 50.0% | |
| GTGGCTGCACCTTATTGGGA+AGG | + | chr1_1:12839383-12839402 | Msa0008880:CDS | 55.0% | |
| GGTAGTTCTTGGTGGGGCAA+AGG | + | chr1_1:12839443-12839462 | Msa0008880:CDS | 55.0% | |
| AGTTCTTGGTGGGGCAAAGG+TGG | + | chr1_1:12839446-12839465 | Msa0008880:CDS | 55.0% | |
| TACAGCAGCTCGGCGTTTGT+GGG | - | chr1_1:12840008-12840027 | None:intergenic | 55.0% | |
| TTACAGCAGCTCGGCGTTTG+TGG | - | chr1_1:12840009-12840028 | None:intergenic | 55.0% | |
| !! | AGCAGAAATGGCGCTGGTTC+TGG | - | chr1_1:12840238-12840257 | None:intergenic | 55.0% |
| GTACACAGCAGAAATGGCGC+TGG | - | chr1_1:12840244-12840263 | None:intergenic | 55.0% | |
| ! | TGGTGGTGCTCCGATTGGAA+GGG | - | chr1_1:12840445-12840464 | None:intergenic | 55.0% |
| !! | TTGGTGGTGCTCCGATTGGA+AGG | - | chr1_1:12840446-12840465 | None:intergenic | 55.0% |
| CGGTGACTTTCCCACCACAA+AGG | - | chr1_1:12840748-12840767 | None:intergenic | 55.0% | |
| AGGGTTCCCTTAGATGCCTC+TGG | + | chr1_1:12841274-12841293 | Msa0008880:CDS | 55.0% | |
| CCCTTAGATGCCTCTGGTGA+TGG | + | chr1_1:12841280-12841299 | Msa0008880:CDS | 55.0% | |
| GCAGGAAGGGGTGACAGATG+TGG | - | chr1_1:12840138-12840157 | None:intergenic | 60.0% | |
| ACCTCCGACGCCCTTCCAAT+CGG | + | chr1_1:12840432-12840451 | Msa0008880:intron | 60.0% | |
| ! | TGCTCCGATTGGAAGGGCGT+CGG | - | chr1_1:12840439-12840458 | None:intergenic | 60.0% |
| !! | TCCGATTGGAAGGGCGTCGG+AGG | - | chr1_1:12840436-12840455 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 12838863 | 12842822 | 12838863 | ID=Msa0008880;Name=Msa0008880 |
| chr1_1 | mRNA | 12838863 | 12842822 | 12838863 | ID=Msa0008880-mRNA-1;Parent=Msa0008880;Name=Msa0008880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=61|1|1|1|1|1|3|174|591 |
| chr1_1 | exon | 12838863 | 12839616 | 12838863 | ID=Msa0008880-mRNA-1:exon:4829;Parent=Msa0008880-mRNA-1 |
| chr1_1 | exon | 12841112 | 12841367 | 12841112 | ID=Msa0008880-mRNA-1:exon:4830;Parent=Msa0008880-mRNA-1 |
| chr1_1 | exon | 12841822 | 12842822 | 12841822 | ID=Msa0008880-mRNA-1:exon:4831;Parent=Msa0008880-mRNA-1 |
| chr1_1 | five_prime_UTR | 12838863 | 12838923 | 12838863 | ID=Msa0008880-mRNA-1:five_prime_utr;Parent=Msa0008880-mRNA-1 |
| chr1_1 | CDS | 12838924 | 12839616 | 12838924 | ID=Msa0008880-mRNA-1:cds;Parent=Msa0008880-mRNA-1 |
| chr1_1 | CDS | 12841112 | 12841367 | 12841112 | ID=Msa0008880-mRNA-1:cds;Parent=Msa0008880-mRNA-1 |
| chr1_1 | CDS | 12841822 | 12842648 | 12841822 | ID=Msa0008880-mRNA-1:cds;Parent=Msa0008880-mRNA-1 |
| chr1_1 | three_prime_UTR | 12842649 | 12842822 | 12842649 | ID=Msa0008880-mRNA-1:three_prime_utr;Parent=Msa0008880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
