Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150100 | sp|Q9LYD8|GGLO3_ARATH | 64.452 | 557 | 191 | 4 | 28 | 579 | 22 | 576 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150100 | A0A1S2Y2S8 | 80.067 | 597 | 107 | 2 | 4 | 591 | 5 | 598 | 0.0 | 994 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001940 | Msa0150100 | 0.800535 | 1.376901e-48 | -8.615850e-47 |
| Msa0008620 | Msa0150100 | 0.871373 | 7.180754e-67 | -8.615850e-47 |
| Msa0008880 | Msa0150100 | 0.867883 | 9.854990e-66 | -8.615850e-47 |
| Msa0058850 | Msa0150100 | 0.952614 | 1.654624e-110 | -8.615850e-47 |
| Msa0058910 | Msa0150100 | 0.860345 | 2.204238e-63 | -8.615850e-47 |
| Msa0103720 | Msa0150100 | 0.887526 | 1.320633e-72 | -8.615850e-47 |
| Msa0150100 | Msa0150150 | 0.897771 | 1.017078e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150100 | MtrunA17_Chr1g0157561 | 92.778 | 360 | 26 | 0 | 231 | 590 | 19 | 378 | 0.0 | 703 |
| Msa0150100 | MtrunA17_Chr8g0346061 | 47.818 | 573 | 288 | 6 | 14 | 578 | 10 | 579 | 0.0 | 552 |
| Msa0150100 | MtrunA17_Chr5g0394031 | 48.750 | 560 | 275 | 7 | 28 | 579 | 28 | 583 | 2.83e-180 | 522 |
| Msa0150100 | MtrunA17_Chr1g0157571 | 92.672 | 232 | 17 | 0 | 1 | 232 | 1 | 232 | 1.49e-156 | 447 |
| Msa0150100 | MtrunA17_Chr1g0157541 | 91.111 | 135 | 12 | 0 | 366 | 500 | 1 | 135 | 1.31e-84 | 259 |
| Msa0150100 | MtrunA17_Chr1g0172001 | 88.462 | 78 | 9 | 0 | 404 | 481 | 11 | 88 | 6.81e-42 | 146 |
| Msa0150100 | MtrunA17_Chr7g0276181 | 47.059 | 136 | 70 | 1 | 446 | 579 | 16 | 151 | 2.34e-36 | 133 |
| Msa0150100 | MtrunA17_Chr7g0276161 | 42.373 | 118 | 66 | 1 | 30 | 145 | 27 | 144 | 2.87e-27 | 107 |
| Msa0150100 | MtrunA17_Chr8g0346031 | 42.553 | 141 | 54 | 2 | 163 | 302 | 12 | 126 | 3.39e-26 | 103 |
| Msa0150100 | MtrunA17_Chr1g0159391 | 82.143 | 56 | 9 | 1 | 510 | 564 | 10 | 65 | 8.67e-25 | 99.8 |
| Msa0150100 | MtrunA17_Chr8g0346041 | 55.556 | 54 | 24 | 0 | 451 | 504 | 3 | 56 | 1.49e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150100 | AT5G11540.1 | 64.452 | 557 | 191 | 4 | 28 | 579 | 22 | 576 | 0.0 | 749 |
| Msa0150100 | AT2G46740.1 | 46.004 | 563 | 291 | 7 | 27 | 578 | 25 | 585 | 0.0 | 526 |
| Msa0150100 | AT2G46760.1 | 44.810 | 578 | 306 | 6 | 9 | 578 | 17 | 589 | 5.82e-180 | 522 |
| Msa0150100 | AT2G46750.1 | 46.359 | 563 | 289 | 7 | 27 | 578 | 21 | 581 | 7.27e-180 | 521 |
| Msa0150100 | AT1G32300.1 | 43.696 | 579 | 309 | 8 | 9 | 578 | 3 | 573 | 1.58e-165 | 484 |
| Msa0150100 | AT5G56490.1 | 45.115 | 563 | 298 | 7 | 30 | 583 | 17 | 577 | 1.76e-165 | 484 |
| Msa0150100 | AT5G56470.1 | 49.153 | 236 | 115 | 3 | 348 | 578 | 12 | 247 | 5.72e-78 | 247 |
Find 116 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTTTCTCTTGGAGTTT+TGG | 0.192601 | 1_4:-11356160 | Msa0150100:CDS |
| CTGTTTATAGATACGATTTC+AGG | 0.197781 | 1_4:-11354653 | Msa0150100:CDS |
| TTGTTGGGTATGTTACATTT+AGG | 0.199389 | 1_4:+11356634 | None:intergenic |
| GTTTGGTGGCTGCACCTTAT+TGG | 0.236643 | 1_4:-11356362 | Msa0150100:CDS |
| TGTTGGGTATGTTACATTTA+GGG | 0.279673 | 1_4:+11356635 | None:intergenic |
| ATTATTCATTGAAGTGAATA+AGG | 0.280510 | 1_4:+11353249 | None:intergenic |
| TTCACCAGCTATCCTGTAAT+TGG | 0.282501 | 1_4:-11353948 | Msa0150100:CDS |
| AGACATTGTAGTCCTCAAAA+AGG | 0.283988 | 1_4:-11353342 | Msa0150100:CDS |
| TGTTGTGGGCATGATAGTTT+TGG | 0.285024 | 1_4:+11356525 | None:intergenic |
| CCAACATGTGTGGGAGGAAT+TGG | 0.289690 | 1_4:-11353601 | Msa0150100:CDS |
| TTTGGTGGCTGCACCTTATT+GGG | 0.293408 | 1_4:-11356361 | Msa0150100:CDS |
| GGAGTTATGCTATGGATTAA+AGG | 0.297527 | 1_4:+11356741 | None:intergenic |
| TTTCCTTGATAGCCAATTAC+AGG | 0.297690 | 1_4:+11353936 | None:intergenic |
| GGTTTAGTCTAGGAGTAAAT+TGG | 0.312203 | 1_4:+11353622 | None:intergenic |
| GCATGGGATCCAAGAATAAA+AGG | 0.315226 | 1_4:-11353861 | Msa0150100:CDS |
| TAAACAGATGTGTGCCTTGA+TGG | 0.324511 | 1_4:+11354669 | None:intergenic |
| TTGACTGTAACAGTTGATTC+AGG | 0.326698 | 1_4:-11356432 | Msa0150100:CDS |
| TGTGGCATAGACATCTATAA+TGG | 0.334215 | 1_4:-11353738 | Msa0150100:CDS |
| CCCTTTGATGCCTCTGGTGA+TGG | 0.359842 | 1_4:-11354627 | Msa0150100:CDS |
| AGGGTTCCCTTTGATGCCTC+TGG | 0.360296 | 1_4:-11354633 | Msa0150100:CDS |
| GATGGAGTCTACGATTTCAT+TGG | 0.370849 | 1_4:-11354609 | Msa0150100:CDS |
| CGAAGTTGTTCTTCTGTTGT+TGG | 0.372174 | 1_4:+11356618 | None:intergenic |
| CTGAGAGACCAGTATTTCAT+TGG | 0.374536 | 1_4:+11354578 | None:intergenic |
| GAGTTATGCTATGGATTAAA+GGG | 0.379012 | 1_4:+11356742 | None:intergenic |
| AAAGCGAACACACGTGATAA+AGG | 0.384174 | 1_4:+11353108 | None:intergenic |
| TTTGAAGGGTGCAGATTGTT+TGG | 0.385906 | 1_4:+11356697 | None:intergenic |
| CACATACTTCCACTGTTCAT+AGG | 0.389646 | 1_4:-11356771 | Msa0150100:CDS |
| GATTGTTTGGTTGCATTGGA+TGG | 0.395081 | 1_4:+11356710 | None:intergenic |
| CAGGATAGCTGGTGAAGATT+AGG | 0.398140 | 1_4:+11353955 | None:intergenic |
| ATTTCAAGCCAATGAAATAC+TGG | 0.405185 | 1_4:-11354586 | Msa0150100:CDS |
| ACGTGATAAAGGTGTGATAA+AGG | 0.406426 | 1_4:+11353119 | None:intergenic |
| TATTGGGAAGGTGTTACAAT+TGG | 0.410864 | 1_4:-11356345 | Msa0150100:CDS |
| TGCAGATTGTTTGGTTGCAT+TGG | 0.412058 | 1_4:+11356706 | None:intergenic |
| TGGGAAGGTGTTACAATTGG+AGG | 0.412609 | 1_4:-11356342 | Msa0150100:CDS |
| ATGCTATGGATTAAAGGGTT+TGG | 0.417400 | 1_4:+11356747 | None:intergenic |
| ATTGTAACACCTTCCCAATA+AGG | 0.428496 | 1_4:+11356348 | None:intergenic |
| AAGGAATTGGTAAAATTTGA+TGG | 0.430551 | 1_4:-11353402 | Msa0150100:CDS |
| GCCATTGTTCTTCAAACCAT+TGG | 0.432966 | 1_4:+11353977 | None:intergenic |
| ACAAGGAAGCTAAAGTTTGT+AGG | 0.446243 | 1_4:-11353293 | Msa0150100:CDS |
| AATGCTGCACAAGTTTCTCT+TGG | 0.447796 | 1_4:-11356168 | Msa0150100:CDS |
| TTGTCATGCAGAGGAATTGC+TGG | 0.454579 | 1_4:-11354069 | Msa0150100:intron |
| ATGAGTTTGCGGACATAACT+TGG | 0.456119 | 1_4:-11354695 | Msa0150100:CDS |
| ATTGGAGGTGTTATTAGTAC+TGG | 0.462333 | 1_4:-11356327 | Msa0150100:CDS |
| TGCACATGGTAGTTCTTGGT+GGG | 0.463800 | 1_4:-11356304 | Msa0150100:CDS |
| TATCCTGTAATTGGCTATCA+AGG | 0.465109 | 1_4:-11353939 | Msa0150100:CDS |
| TTGCATTGGATGGGAGATTG+TGG | 0.467626 | 1_4:+11356720 | None:intergenic |
| GTGCACATGGTAGTTCTTGG+TGG | 0.467984 | 1_4:-11356305 | Msa0150100:CDS |
| GAAGTTGTTCTTCTGTTGTT+GGG | 0.468307 | 1_4:+11356619 | None:intergenic |
| TAAAATCCACCACATCCAAT+AGG | 0.468753 | 1_4:+11356803 | None:intergenic |
| AAAATTTGATGGCTGTGCTT+TGG | 0.471057 | 1_4:-11353391 | Msa0150100:CDS |
| TCTCAGTCAGTTAGAGCAGC+AGG | 0.472911 | 1_4:-11354561 | Msa0150100:intron |
| TTCAAGAAATTAACAGCCAA+TGG | 0.477497 | 1_4:-11353993 | Msa0150100:CDS |
| CTGGTGCACATGGTAGTTCT+TGG | 0.479918 | 1_4:-11356308 | Msa0150100:CDS |
| AAAGGGTATTATTGTAGTCA+TGG | 0.480600 | 1_4:-11353324 | Msa0150100:CDS |
| TGATTCCAACCTCAAAACTT+TGG | 0.483399 | 1_4:+11356206 | None:intergenic |
| AAAGCCTCAGAAGCATATCT+AGG | 0.484079 | 1_4:-11353696 | Msa0150100:CDS |
| TTAACAGCATCCACTACATT+GGG | 0.484270 | 1_4:-11354017 | Msa0150100:CDS |
| TAGTAGATATATGAAACAAA+TGG | 0.491909 | 1_4:+11353076 | None:intergenic |
| CACACATGTTGGTTTAGTCT+AGG | 0.492277 | 1_4:+11353612 | None:intergenic |
| AGCCACATTGGGCTAAGAAT+AGG | 0.494478 | 1_4:-11353548 | Msa0150100:CDS |
| AAAACACAGGAAACACGAAC+GGG | 0.494628 | 1_4:-11354046 | Msa0150100:CDS |
| TCCATCACCAGAGGCATCAA+AGG | 0.497174 | 1_4:+11354626 | None:intergenic |
| ATAGCCAATTACAGGATAGC+TGG | 0.501448 | 1_4:+11353944 | None:intergenic |
| TGTTTATAGATACGATTTCA+GGG | 0.502251 | 1_4:-11354652 | Msa0150100:CDS |
| CCAATTCCTCCCACACATGT+TGG | 0.505894 | 1_4:+11353601 | None:intergenic |
| GGTAGTTCTTGGTGGGGCAA+AGG | 0.509312 | 1_4:-11356297 | Msa0150100:CDS |
| CTTAACAGCATCCACTACAT+TGG | 0.511042 | 1_4:-11354018 | Msa0150100:CDS |
| AGTTCTTGGTGGGGCAAAGG+TGG | 0.513089 | 1_4:-11356294 | Msa0150100:CDS |
| TTACTACCTATTGGATGTGG+TGG | 0.517825 | 1_4:-11356809 | Msa0150100:CDS |
| GTATGGTGCTAAGCCACATT+GGG | 0.518685 | 1_4:-11353559 | Msa0150100:CDS |
| GAAAGGGTATTGAAATGAAA+GGG | 0.525672 | 1_4:+11356857 | None:intergenic |
| TTCAAAACTCGTACGGCACA+TGG | 0.525730 | 1_4:-11356680 | Msa0150100:CDS |
| TTTCTTGAATCCCAATGTAG+TGG | 0.532470 | 1_4:+11354007 | None:intergenic |
| GTGGCTGCACCTTATTGGGA+AGG | 0.543644 | 1_4:-11356357 | Msa0150100:CDS |
| ATTGTTTGGTTGCATTGGAT+GGG | 0.545187 | 1_4:+11356711 | None:intergenic |
| GATCCACAAGATGTGTTCTC+TGG | 0.545238 | 1_4:-11353453 | Msa0150100:CDS |
| AGTATGGTGCTAAGCCACAT+TGG | 0.547690 | 1_4:-11353560 | Msa0150100:CDS |
| GAATAGACACATCATGTGCA+TGG | 0.549476 | 1_4:-11353878 | Msa0150100:CDS |
| AAAATTGTATACCTTGGAGA+TGG | 0.550760 | 1_4:+11356134 | None:intergenic |
| GTTCCTAGTTCTGAATCTGA+AGG | 0.558107 | 1_4:-11356234 | Msa0150100:CDS |
| AAGATGTGTTCTCTGGTGAT+TGG | 0.565409 | 1_4:-11353446 | Msa0150100:CDS |
| TGAAAGGGTATTGAAATGAA+AGG | 0.565709 | 1_4:+11356856 | None:intergenic |
| GGGTGATGATTGTGGTGAAA+GGG | 0.565945 | 1_4:+11356841 | None:intergenic |
| TACCCTTCAGATTCAGAACT+AGG | 0.567964 | 1_4:+11356231 | None:intergenic |
| CCATCACCAGAGGCATCAAA+GGG | 0.568915 | 1_4:+11354627 | None:intergenic |
| ACATAACTTGGTATCCATCA+AGG | 0.570790 | 1_4:-11354683 | Msa0150100:CDS |
| GAAAACACAGGAAACACGAA+CGG | 0.576013 | 1_4:-11354047 | Msa0150100:CDS |
| TGCACCCTTCAAAACTCGTA+CGG | 0.576208 | 1_4:-11356687 | Msa0150100:CDS |
| TGGGTGATGATTGTGGTGAA+AGG | 0.578150 | 1_4:+11356840 | None:intergenic |
| TGAAGTTATCACTTGAGCAT+AGG | 0.581177 | 1_4:-11354794 | Msa0150100:CDS |
| GCACATGGTAGTTCTTGGTG+GGG | 0.581419 | 1_4:-11356303 | Msa0150100:CDS |
| TTGTCCTAGATATGCTTCTG+AGG | 0.582676 | 1_4:+11353692 | None:intergenic |
| TCACCAGAGAACACATCTTG+TGG | 0.585752 | 1_4:+11353450 | None:intergenic |
| GAGATTGTGGAGTTATGCTA+TGG | 0.590139 | 1_4:+11356733 | None:intergenic |
| TTTGATGGCTGTGCTTTGGA+AGG | 0.590529 | 1_4:-11353387 | Msa0150100:CDS |
| TAGTCATGGATTTGTCTACA+AGG | 0.591323 | 1_4:-11353310 | Msa0150100:CDS |
| TTCCTAGTTCTGAATCTGAA+GGG | 0.594559 | 1_4:-11356233 | Msa0150100:CDS |
| AATAGACACATCATGTGCAT+GGG | 0.601730 | 1_4:-11353877 | Msa0150100:CDS |
| GCCAATGGTTTGAAGAACAA+TGG | 0.605151 | 1_4:-11353978 | Msa0150100:CDS |
| CACCACAATCATCACCCACA+TGG | 0.608207 | 1_4:-11356835 | Msa0150100:exon |
| TAGACTAAACCAACATGTGT+GGG | 0.608955 | 1_4:-11353610 | Msa0150100:CDS |
| GTTATTAGTACTGGTGCACA+TGG | 0.614209 | 1_4:-11356318 | Msa0150100:CDS |
| AAAGGCAACATTGATAGAGA+CGG | 0.620268 | 1_4:+11353137 | None:intergenic |
| TTCCTATTCTTAGCCCAATG+TGG | 0.624843 | 1_4:+11353546 | None:intergenic |
| CTAGACTAAACCAACATGTG+TGG | 0.630678 | 1_4:-11353611 | Msa0150100:CDS |
| GAGGAATTGCTGGAAAACAC+AGG | 0.634296 | 1_4:-11354059 | Msa0150100:CDS |
| TCTAGGACAATCAGAAGACT+CGG | 0.645708 | 1_4:-11353679 | Msa0150100:CDS |
| ACTAAACCAACATGTGTGGG+AGG | 0.649890 | 1_4:-11353607 | Msa0150100:CDS |
| TTAGGGCATAGCAACTGTTG+CGG | 0.657447 | 1_4:+11356652 | None:intergenic |
| AGCCATGTGGGTGATGATTG+TGG | 0.657872 | 1_4:+11356833 | None:intergenic |
| ACTTGTGCAGCATTAAACAA+AGG | 0.660665 | 1_4:+11356177 | None:intergenic |
| AATAGGTAGTAAAAGCCATG+TGG | 0.663153 | 1_4:+11356820 | None:intergenic |
| TAGATATATGAAACAAATGG+AGG | 0.667622 | 1_4:+11353079 | None:intergenic |
| GGGTTTGGTCCTATGAACAG+TGG | 0.675025 | 1_4:+11356762 | None:intergenic |
| ATCGTAGACTCCATCACCAG+AGG | 0.678389 | 1_4:+11354617 | None:intergenic |
| ATAGGTAGTAAAAGCCATGT+GGG | 0.678509 | 1_4:+11356821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTACAGTTTTAAA+TGG | + | chr1_4:11353932-11353951 | None:intergenic | 10.0% |
| !!! | AATTTTGAAAGTTCTTTAAA+AGG | + | chr1_4:11353870-11353889 | None:intergenic | 15.0% |
| !! | ATAATTCTTGATATCATTAT+AGG | + | chr1_4:11353960-11353979 | None:intergenic | 15.0% |
| !!! | TTTTTTAAAAAACTTCGAAA+AGG | - | chr1_4:11355565-11355584 | Msa0150100:intron | 15.0% |
| !!! | TTTTTAAAAAACTTCGAAAA+GGG | - | chr1_4:11355566-11355585 | Msa0150100:intron | 15.0% |
| !!! | TTTTTGGTATTTTGAAAAAT+CGG | + | chr1_4:11355788-11355807 | None:intergenic | 15.0% |
| !! | TCAATAAAAAGATTAAAGTT+AGG | + | chr1_4:11356467-11356486 | None:intergenic | 15.0% |
| !! | ATTGGATATTGTTCAAATAT+CGG | - | chr1_4:11354376-11354395 | Msa0150100:intron | 20.0% |
| !! | TTTAAGAGAGTTTATTATTG+AGG | - | chr1_4:11354651-11354670 | Msa0150100:CDS | 20.0% |
| !! | TTAAGAGAGTTTATTATTGA+GGG | - | chr1_4:11354652-11354671 | Msa0150100:CDS | 20.0% |
| !! | ATGTAATTACTGTAATTAAG+AGG | + | chr1_4:11354985-11355004 | None:intergenic | 20.0% |
| !! | TATTTGTAAAGTAACTTCTT+CGG | + | chr1_4:11355041-11355060 | None:intergenic | 20.0% |
| !! | ATAACCAATTAAAGATGATA+AGG | - | chr1_4:11355480-11355499 | Msa0150100:intron | 20.0% |
| !! | AAAACCTTATCATCTTTAAT+TGG | + | chr1_4:11355487-11355506 | None:intergenic | 20.0% |
| !!! | TCGAAGTTTTTTAAAAAAGT+TGG | + | chr1_4:11355563-11355582 | None:intergenic | 20.0% |
| !!! | ATTTGACTTTATAACTTCAA+GGG | + | chr1_4:11355659-11355678 | None:intergenic | 20.0% |
| !!! | AATTTGACTTTATAACTTCA+AGG | + | chr1_4:11355660-11355679 | None:intergenic | 20.0% |
| !! | CAATAAATAAACTAAAGACA+AGG | - | chr1_4:11355711-11355730 | Msa0150100:intron | 20.0% |
| !!! | ATAAATCCACAAAATTTTTG+TGG | - | chr1_4:11356200-11356219 | Msa0150100:CDS | 20.0% |
| !! | TATTGAAGCTAAAAAACAAA+TGG | - | chr1_4:11356481-11356500 | Msa0150100:CDS | 20.0% |
| !! | ATTATTCATTGAAGTGAATA+AGG | + | chr1_4:11356710-11356729 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTAAGAAATGAAG+AGG | - | chr1_4:11356788-11356807 | Msa0150100:CDS | 20.0% |
| !! | ATGAAAGGGATTATGATTTT+TGG | + | chr1_4:11353088-11353107 | None:intergenic | 25.0% |
| !! | TGAGAATTTTGTGACAATTT+TGG | + | chr1_4:11353402-11353421 | None:intergenic | 25.0% |
| !!! | CATGATTATTGTTTTGTTGT+GGG | + | chr1_4:11353448-11353467 | None:intergenic | 25.0% |
| ! | ATTGATGAAGTTGAGAAAAA+TGG | - | chr1_4:11353566-11353585 | Msa0150100:CDS | 25.0% |
| !! | TGAGAAAAATGGATTTAGTT+TGG | - | chr1_4:11353577-11353596 | Msa0150100:CDS | 25.0% |
| ! | GAATTGAAAATTGTATACCT+TGG | + | chr1_4:11353831-11353850 | None:intergenic | 25.0% |
| !! | TGAAAGTTCTTTAAAAGGAA+TGG | + | chr1_4:11353865-11353884 | None:intergenic | 25.0% |
| ! | TTATATAATTCTACCCGAAT+TGG | - | chr1_4:11353976-11353995 | Msa0150100:CDS | 25.0% |
| !! | CCTAAAAAATCAGTTTGTTT+CGG | + | chr1_4:11354026-11354045 | None:intergenic | 25.0% |
| !!! | CGAAACAAACTGATTTTTTA+GGG | - | chr1_4:11354024-11354043 | Msa0150100:CDS | 25.0% |
| !!! | GAAACAAACTGATTTTTTAG+GGG | - | chr1_4:11354025-11354044 | Msa0150100:CDS | 25.0% |
| ! | GGATTGATAAAGTTTACATA+TGG | + | chr1_4:11354588-11354607 | None:intergenic | 25.0% |
| ! | AGAAAAATTGGTAAATTGGT+TGG | + | chr1_4:11354726-11354745 | None:intergenic | 25.0% |
| ! | CAACAGAAAAATTGGTAAAT+TGG | + | chr1_4:11354730-11354749 | None:intergenic | 25.0% |
| ! | AAGATAAGCAACAGAAAAAT+TGG | + | chr1_4:11354738-11354757 | None:intergenic | 25.0% |
| ! | GTAATTACATAGTACTATGT+AGG | - | chr1_4:11354995-11355014 | Msa0150100:intron | 25.0% |
| ! | TATCATTGTTAAATGATGTC+AGG | - | chr1_4:11355139-11355158 | Msa0150100:intron | 25.0% |
| ! | TGTTTATAGATACGATTTCA+GGG | - | chr1_4:11355304-11355323 | Msa0150100:intron | 25.0% |
| ! | TTGGTTATTACTTACTAAGA+AGG | + | chr1_4:11355544-11355563 | None:intergenic | 25.0% |
| !! | GATCATTTTACAATTGTCTT+CGG | - | chr1_4:11355616-11355635 | Msa0150100:intron | 25.0% |
| ! | CAACGTTGAAGTTATATTAT+AGG | + | chr1_4:11355870-11355889 | None:intergenic | 25.0% |
| !! | AAGAACAATCCTTTTATTCT+TGG | + | chr1_4:11356107-11356126 | None:intergenic | 25.0% |
| ! | AAGGAATTGGTAAAATTTGA+TGG | - | chr1_4:11356554-11356573 | Msa0150100:CDS | 25.0% |
| ! | TAGATATATGAAACAAATGG+AGG | + | chr1_4:11356880-11356899 | None:intergenic | 25.0% |
| !! | GAAAGGGTATTGAAATGAAA+GGG | + | chr1_4:11353102-11353121 | None:intergenic | 30.0% |
| !! | TGAAAGGGTATTGAAATGAA+AGG | + | chr1_4:11353103-11353122 | None:intergenic | 30.0% |
| ! | GAGTTATGCTATGGATTAAA+GGG | + | chr1_4:11353217-11353236 | None:intergenic | 30.0% |
| TGTTGGGTATGTTACATTTA+GGG | + | chr1_4:11353324-11353343 | None:intergenic | 30.0% | |
| TTGTTGGGTATGTTACATTT+AGG | + | chr1_4:11353325-11353344 | None:intergenic | 30.0% | |
| !!! | AAGGTTGTTTTGAACAACAT+AGG | + | chr1_4:11353375-11353394 | None:intergenic | 30.0% |
| !! | GCATGATTATTGTTTTGTTG+TGG | + | chr1_4:11353449-11353468 | None:intergenic | 30.0% |
| !! | GAAAAATGGATTTAGTTTGG+TGG | - | chr1_4:11353580-11353599 | Msa0150100:CDS | 30.0% |
| ! | TGCTTTTCATGATCATGTTT+TGG | - | chr1_4:11353685-11353704 | Msa0150100:CDS | 30.0% |
| ! | GCTTTTCATGATCATGTTTT+GGG | - | chr1_4:11353686-11353705 | Msa0150100:CDS | 30.0% |
| AAAATTGTATACCTTGGAGA+TGG | + | chr1_4:11353825-11353844 | None:intergenic | 30.0% | |
| GGTGGTAATTATTTCAGAAT+AGG | + | chr1_4:11354005-11354024 | None:intergenic | 30.0% | |
| ! | AAAAAATCAGTTTGTTTCGG+TGG | + | chr1_4:11354023-11354042 | None:intergenic | 30.0% |
| !!! | CCGAAACAAACTGATTTTTT+AGG | - | chr1_4:11354023-11354042 | Msa0150100:CDS | 30.0% |
| !!! | TAGAATTTTTTACAGCAGCT+CGG | + | chr1_4:11354071-11354090 | None:intergenic | 30.0% |
| TTATTGCAAGACCTATAGTT+TGG | + | chr1_4:11354409-11354428 | None:intergenic | 30.0% | |
| TAGGTCTTGCAATAATAATG+TGG | - | chr1_4:11354414-11354433 | Msa0150100:intron | 30.0% | |
| AAAAAATGCTCTGATTGGAA+GGG | + | chr1_4:11354554-11354573 | None:intergenic | 30.0% | |
| ACATGCATTTAATGATCTCT+TGG | + | chr1_4:11354683-11354702 | None:intergenic | 30.0% | |
| TCAATCCATTTCCTTCAAAA+TGG | + | chr1_4:11354775-11354794 | None:intergenic | 30.0% | |
| ! | ATTAATCGACTTCTTGAAGA+CGG | + | chr1_4:11354939-11354958 | None:intergenic | 30.0% |
| ! | TAATTTTTCACCTCTTAGTG+AGG | - | chr1_4:11355081-11355100 | Msa0150100:intron | 30.0% |
| ! | AATTTTTCACCTCTTAGTGA+GGG | - | chr1_4:11355082-11355101 | Msa0150100:intron | 30.0% |
| ! | TGCAAAAAAGTATGAGTTTG+CGG | - | chr1_4:11355250-11355269 | Msa0150100:intron | 30.0% |
| CTGTTTATAGATACGATTTC+AGG | - | chr1_4:11355303-11355322 | Msa0150100:intron | 30.0% | |
| ATTTCAAGCCAATGAAATAC+TGG | - | chr1_4:11355370-11355389 | Msa0150100:intron | 30.0% | |
| !!! | AGATGATAAGGTTTTGTTAC+TGG | - | chr1_4:11355492-11355511 | Msa0150100:intron | 30.0% |
| ! | ATTTTACAATTGTCTTCGGA+GGG | - | chr1_4:11355620-11355639 | Msa0150100:intron | 30.0% |
| ATTGTTACTCCATAAGATCT+CGG | + | chr1_4:11355695-11355714 | None:intergenic | 30.0% | |
| TTCAAGAAATTAACAGCCAA+TGG | - | chr1_4:11355963-11355982 | Msa0150100:intron | 30.0% | |
| ! | ATTTTCCCTGCTTCAAAATT+TGG | - | chr1_4:11356143-11356162 | Msa0150100:intron | 30.0% |
| !!! | AATCTCCAAATTTTGAAGCA+GGG | + | chr1_4:11356151-11356170 | None:intergenic | 30.0% |
| !!! | AAATCTCCAAATTTTGAAGC+AGG | + | chr1_4:11356152-11356171 | None:intergenic | 30.0% |
| ! | TCTATGCCACAAAAATTTTG+TGG | + | chr1_4:11356209-11356228 | None:intergenic | 30.0% |
| !!! | CAGATTGCATTTTTCAAGTA+TGG | - | chr1_4:11356380-11356399 | Msa0150100:CDS | 30.0% |
| ! | CTACAATAATACCCTTTTTG+AGG | + | chr1_4:11356629-11356648 | None:intergenic | 30.0% |
| !! | AAAGGGTATTATTGTAGTCA+TGG | - | chr1_4:11356632-11356651 | Msa0150100:CDS | 30.0% |
| ATAGGTAGTAAAAGCCATGT+GGG | + | chr1_4:11353138-11353157 | None:intergenic | 35.0% | |
| AATAGGTAGTAAAAGCCATG+TGG | + | chr1_4:11353139-11353158 | None:intergenic | 35.0% | |
| ! | ACATGGCTTTTACTACCTAT+TGG | - | chr1_4:11353138-11353157 | Msa0150100:three_prime_UTR | 35.0% |
| ! | CTTTTACTACCTATTGGATG+TGG | - | chr1_4:11353144-11353163 | Msa0150100:three_prime_UTR | 35.0% |
| TAAAATCCACCACATCCAAT+AGG | + | chr1_4:11353156-11353175 | None:intergenic | 35.0% | |
| ! | ATGCTATGGATTAAAGGGTT+TGG | + | chr1_4:11353212-11353231 | None:intergenic | 35.0% |
| ! | GGAGTTATGCTATGGATTAA+AGG | + | chr1_4:11353218-11353237 | None:intergenic | 35.0% |
| ATTGTTTGGTTGCATTGGAT+GGG | + | chr1_4:11353248-11353267 | None:intergenic | 35.0% | |
| GAAGTTGTTCTTCTGTTGTT+GGG | + | chr1_4:11353340-11353359 | None:intergenic | 35.0% | |
| !!! | TTGTGACAATTTTGGCTGTA+AGG | + | chr1_4:11353394-11353413 | None:intergenic | 35.0% |
| ! | TTGACTGTAACAGTTGATTC+AGG | - | chr1_4:11353524-11353543 | Msa0150100:CDS | 35.0% |
| ATTGTAACACCTTCCCAATA+AGG | + | chr1_4:11353611-11353630 | None:intergenic | 35.0% | |
| !! | TATTGGGAAGGTGTTACAAT+TGG | - | chr1_4:11353611-11353630 | Msa0150100:CDS | 35.0% |
| !! | ATTGGAGGTGTTATTAGTAC+TGG | - | chr1_4:11353629-11353648 | Msa0150100:CDS | 35.0% |
| !! | TTCCTAGTTCTGAATCTGAA+GGG | - | chr1_4:11353723-11353742 | Msa0150100:CDS | 35.0% |
| TGATTCCAACCTCAAAACTT+TGG | + | chr1_4:11353753-11353772 | None:intergenic | 35.0% | |
| ACTTGTGCAGCATTAAACAA+AGG | + | chr1_4:11353782-11353801 | None:intergenic | 35.0% | |
| ! | ACAAGTTTCTCTTGGAGTTT+TGG | - | chr1_4:11353796-11353815 | Msa0150100:CDS | 35.0% |
| ! | CAAGTTTCTCTTGGAGTTTT+GGG | - | chr1_4:11353797-11353816 | Msa0150100:CDS | 35.0% |
| TTCAGAATAGGCTTCCAATT+CGG | + | chr1_4:11353993-11354012 | None:intergenic | 35.0% | |
| CTGAGATTCTGAGTTATACT+AGG | + | chr1_4:11354233-11354252 | None:intergenic | 35.0% | |
| GAGACTATACTGTAAAGGAT+TGG | - | chr1_4:11354358-11354377 | Msa0150100:intron | 35.0% | |
| GAAAAAATGCTCTGATTGGA+AGG | + | chr1_4:11354555-11354574 | None:intergenic | 35.0% | |
| !!! | TCCAATCAGAGCATTTTTTC+TGG | - | chr1_4:11354555-11354574 | Msa0150100:intron | 35.0% |
| TCCAGAAAAAATGCTCTGAT+TGG | + | chr1_4:11354559-11354578 | None:intergenic | 35.0% | |
| !!! | AGAGCATTTTTTCTGGAACT+AGG | - | chr1_4:11354562-11354581 | Msa0150100:CDS | 35.0% |
| !! | TTTTGGGTGACAATGCAATT+TGG | + | chr1_4:11354614-11354633 | None:intergenic | 35.0% |
| ! | CATTGTCAACACCATTTTGA+AGG | - | chr1_4:11354761-11354780 | Msa0150100:CDS | 35.0% |
| !! | CAACACCATTTTGAAGGAAA+TGG | - | chr1_4:11354767-11354786 | Msa0150100:CDS | 35.0% |
| !! | AAATGGATTGACTACCTTTG+TGG | - | chr1_4:11354784-11354803 | Msa0150100:CDS | 35.0% |
| TGAAGTTATCACTTGAGCAT+AGG | - | chr1_4:11355162-11355181 | Msa0150100:intron | 35.0% | |
| ACATAACTTGGTATCCATCA+AGG | - | chr1_4:11355273-11355292 | Msa0150100:intron | 35.0% | |
| ! | CATTTTACAATTGTCTTCGG+AGG | - | chr1_4:11355619-11355638 | Msa0150100:intron | 35.0% |
| TGACTTTATAACTTCAAGGG+AGG | + | chr1_4:11355656-11355675 | None:intergenic | 35.0% | |
| TAAATTGCAGATGTGCAGTT+AGG | + | chr1_4:11355817-11355836 | None:intergenic | 35.0% | |
| TTAACAGCATCCACTACATT+GGG | - | chr1_4:11355939-11355958 | Msa0150100:intron | 35.0% | |
| TTTCTTGAATCCCAATGTAG+TGG | + | chr1_4:11355952-11355971 | None:intergenic | 35.0% | |
| TATCCTGTAATTGGCTATCA+AGG | - | chr1_4:11356017-11356036 | Msa0150100:intron | 35.0% | |
| ! | TTTCCTTGATAGCCAATTAC+AGG | + | chr1_4:11356023-11356042 | None:intergenic | 35.0% |
| CAAGGAAAAATGCAAACTTC+AGG | - | chr1_4:11356035-11356054 | Msa0150100:intron | 35.0% | |
| AATAGACACATCATGTGCAT+GGG | - | chr1_4:11356079-11356098 | Msa0150100:intron | 35.0% | |
| TGTGGCATAGACATCTATAA+TGG | - | chr1_4:11356218-11356237 | Msa0150100:CDS | 35.0% | |
| GGTTTAGTCTAGGAGTAAAT+TGG | + | chr1_4:11356337-11356356 | None:intergenic | 35.0% | |
| TAGACTAAACCAACATGTGT+GGG | - | chr1_4:11356346-11356365 | Msa0150100:CDS | 35.0% | |
| ! | TGGTCAGATGAGATTTTGTA+TGG | - | chr1_4:11356530-11356549 | Msa0150100:CDS | 35.0% |
| ! | GGTCAGATGAGATTTTGTAT+GGG | - | chr1_4:11356531-11356550 | Msa0150100:CDS | 35.0% |
| ! | AGATGAGATTTTGTATGGGA+AGG | - | chr1_4:11356535-11356554 | Msa0150100:CDS | 35.0% |
| ! | GATTTTGTATGGGAAGGAAT+TGG | - | chr1_4:11356541-11356560 | Msa0150100:CDS | 35.0% |
| ! | AAAATTTGATGGCTGTGCTT+TGG | - | chr1_4:11356565-11356584 | Msa0150100:CDS | 35.0% |
| AGACATTGTAGTCCTCAAAA+AGG | - | chr1_4:11356614-11356633 | Msa0150100:CDS | 35.0% | |
| GACATTGTAGTCCTCAAAAA+GGG | - | chr1_4:11356615-11356634 | Msa0150100:CDS | 35.0% | |
| TAGTCATGGATTTGTCTACA+AGG | - | chr1_4:11356646-11356665 | Msa0150100:CDS | 35.0% | |
| ACAAGGAAGCTAAAGTTTGT+AGG | - | chr1_4:11356663-11356682 | Msa0150100:CDS | 35.0% | |
| AAAGGCAACATTGATAGAGA+CGG | + | chr1_4:11356822-11356841 | None:intergenic | 35.0% | |
| ! | ACGTGATAAAGGTGTGATAA+AGG | + | chr1_4:11356840-11356859 | None:intergenic | 35.0% |
| TTACTACCTATTGGATGTGG+TGG | - | chr1_4:11353147-11353166 | Msa0150100:three_prime_UTR | 40.0% | |
| CACATACTTCCACTGTTCAT+AGG | - | chr1_4:11353185-11353204 | Msa0150100:three_prime_UTR | 40.0% | |
| GAGATTGTGGAGTTATGCTA+TGG | + | chr1_4:11353226-11353245 | None:intergenic | 40.0% | |
| GATTGTTTGGTTGCATTGGA+TGG | + | chr1_4:11353249-11353268 | None:intergenic | 40.0% | |
| TGCAGATTGTTTGGTTGCAT+TGG | + | chr1_4:11353253-11353272 | None:intergenic | 40.0% | |
| ! | TTTGAAGGGTGCAGATTGTT+TGG | + | chr1_4:11353262-11353281 | None:intergenic | 40.0% |
| CGAAGTTGTTCTTCTGTTGT+TGG | + | chr1_4:11353341-11353360 | None:intergenic | 40.0% | |
| ! | GTTGTGGGCATGATAGTTTT+GGG | + | chr1_4:11353433-11353452 | None:intergenic | 40.0% |
| ! | TGTTGTGGGCATGATAGTTT+TGG | + | chr1_4:11353434-11353453 | None:intergenic | 40.0% |
| !! | GTTATTAGTACTGGTGCACA+TGG | - | chr1_4:11353638-11353657 | Msa0150100:CDS | 40.0% |
| !! | GTTCCTAGTTCTGAATCTGA+AGG | - | chr1_4:11353722-11353741 | Msa0150100:CDS | 40.0% |
| TACCCTTCAGATTCAGAACT+AGG | + | chr1_4:11353728-11353747 | None:intergenic | 40.0% | |
| !! | AAGGGTATGCCAAAGTTTTG+AGG | - | chr1_4:11353741-11353760 | Msa0150100:CDS | 40.0% |
| !!! | GTATGCCAAAGTTTTGAGGT+TGG | - | chr1_4:11353745-11353764 | Msa0150100:CDS | 40.0% |
| AATGCTGCACAAGTTTCTCT+TGG | - | chr1_4:11353788-11353807 | Msa0150100:CDS | 40.0% | |
| TCAGAATAGGCTTCCAATTC+GGG | + | chr1_4:11353992-11354011 | None:intergenic | 40.0% | |
| !! | GTTATACTAGGTGTTGACAG+AGG | + | chr1_4:11354221-11354240 | None:intergenic | 40.0% |
| ! | AATTTTGTCCAGTGAGGAAG+AGG | + | chr1_4:11354263-11354282 | None:intergenic | 40.0% |
| ATGCAGAAATTTACTGCAGC+TGG | + | chr1_4:11354319-11354338 | None:intergenic | 40.0% | |
| TACAGTATAGTCTCCGACAA+AGG | + | chr1_4:11354352-11354371 | None:intergenic | 40.0% | |
| TGTCGGAGACTATACTGTAA+AGG | - | chr1_4:11354353-11354372 | Msa0150100:intron | 40.0% | |
| ! | TCGGTTGCTTTCCAAACTAT+AGG | - | chr1_4:11354395-11354414 | Msa0150100:intron | 40.0% |
| AAAGCAGTCAGAAGAGTAGT+TGG | + | chr1_4:11354446-11354465 | None:intergenic | 40.0% | |
| TATGGTCAGACTCAATTTGG+TGG | + | chr1_4:11354515-11354534 | None:intergenic | 40.0% | |
| GGTTATGGTCAGACTCAATT+TGG | + | chr1_4:11354518-11354537 | None:intergenic | 40.0% | |
| GGATGAATACGGTAAGGTTA+TGG | + | chr1_4:11354533-11354552 | None:intergenic | 40.0% | |
| CTGATTGGAAGGGATGAATA+CGG | + | chr1_4:11354544-11354563 | None:intergenic | 40.0% | |
| CCGAAGAATACACTAAACTG+CGG | + | chr1_4:11354821-11354840 | None:intergenic | 40.0% | |
| CCGCAGTTTAGTGTATTCTT+CGG | - | chr1_4:11354818-11354837 | Msa0150100:intron | 40.0% | |
| AACTTCTTCGGTACGTGTAA+AGG | + | chr1_4:11355029-11355048 | None:intergenic | 40.0% | |
| ATGAGTTTGCGGACATAACT+TGG | - | chr1_4:11355261-11355280 | Msa0150100:intron | 40.0% | |
| TAAACAGATGTGTGCCTTGA+TGG | + | chr1_4:11355290-11355309 | None:intergenic | 40.0% | |
| GATGGAGTCTACGATTTCAT+TGG | - | chr1_4:11355347-11355366 | Msa0150100:intron | 40.0% | |
| CTGAGAGACCAGTATTTCAT+TGG | + | chr1_4:11355381-11355400 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTGTTACTGGTGTG+AGG | - | chr1_4:11355499-11355518 | Msa0150100:intron | 40.0% |
| ! | GAAGGTACAATATGACAGTG+AGG | + | chr1_4:11355526-11355545 | None:intergenic | 40.0% |
| ! | TGCAGTTAGGTCGCAATTTT+TGG | + | chr1_4:11355804-11355823 | None:intergenic | 40.0% |
| GAAAACACAGGAAACACGAA+CGG | - | chr1_4:11355909-11355928 | Msa0150100:intron | 40.0% | |
| AAAACACAGGAAACACGAAC+GGG | - | chr1_4:11355910-11355929 | Msa0150100:intron | 40.0% | |
| CTTAACAGCATCCACTACAT+TGG | - | chr1_4:11355938-11355957 | Msa0150100:intron | 40.0% | |
| GCCAATGGTTTGAAGAACAA+TGG | - | chr1_4:11355978-11355997 | Msa0150100:intron | 40.0% | |
| GCCATTGTTCTTCAAACCAT+TGG | + | chr1_4:11355982-11356001 | None:intergenic | 40.0% | |
| TTCACCAGCTATCCTGTAAT+TGG | - | chr1_4:11356008-11356027 | Msa0150100:intron | 40.0% | |
| ATAGCCAATTACAGGATAGC+TGG | + | chr1_4:11356015-11356034 | None:intergenic | 40.0% | |
| GAATAGACACATCATGTGCA+TGG | - | chr1_4:11356078-11356097 | Msa0150100:intron | 40.0% | |
| GCATGGGATCCAAGAATAAA+AGG | - | chr1_4:11356095-11356114 | Msa0150100:intron | 40.0% | |
| ! | AAAGCCTCAGAAGCATATCT+AGG | - | chr1_4:11356260-11356279 | Msa0150100:CDS | 40.0% |
| TTGTCCTAGATATGCTTCTG+AGG | + | chr1_4:11356267-11356286 | None:intergenic | 40.0% | |
| ! | TCTAGGACAATCAGAAGACT+CGG | - | chr1_4:11356277-11356296 | Msa0150100:CDS | 40.0% |
| !! | CACACATGTTGGTTTAGTCT+AGG | + | chr1_4:11356347-11356366 | None:intergenic | 40.0% |
| CTAGACTAAACCAACATGTG+TGG | - | chr1_4:11356345-11356364 | Msa0150100:CDS | 40.0% | |
| TTCCTATTCTTAGCCCAATG+TGG | + | chr1_4:11356413-11356432 | None:intergenic | 40.0% | |
| AAGATGTGTTCTCTGGTGAT+TGG | - | chr1_4:11356510-11356529 | Msa0150100:CDS | 40.0% | |
| AAAGCGAACACACGTGATAA+AGG | + | chr1_4:11356851-11356870 | None:intergenic | 40.0% | |
| GGGTGATGATTGTGGTGAAA+GGG | + | chr1_4:11353118-11353137 | None:intergenic | 45.0% | |
| TGGGTGATGATTGTGGTGAA+AGG | + | chr1_4:11353119-11353138 | None:intergenic | 45.0% | |
| TTGCATTGGATGGGAGATTG+TGG | + | chr1_4:11353239-11353258 | None:intergenic | 45.0% | |
| TGCACCCTTCAAAACTCGTA+CGG | - | chr1_4:11353269-11353288 | Msa0150100:CDS | 45.0% | |
| !!! | TGTGCCGTACGAGTTTTGAA+GGG | + | chr1_4:11353276-11353295 | None:intergenic | 45.0% |
| !! | ATGTGCCGTACGAGTTTTGA+AGG | + | chr1_4:11353277-11353296 | None:intergenic | 45.0% |
| TTCAAAACTCGTACGGCACA+TGG | - | chr1_4:11353276-11353295 | Msa0150100:CDS | 45.0% | |
| TTAGGGCATAGCAACTGTTG+CGG | + | chr1_4:11353307-11353326 | None:intergenic | 45.0% | |
| ! | TTTGGTGGCTGCACCTTATT+GGG | - | chr1_4:11353595-11353614 | Msa0150100:CDS | 45.0% |
| !! | TGGGAAGGTGTTACAATTGG+AGG | - | chr1_4:11353614-11353633 | Msa0150100:CDS | 45.0% |
| TGCACATGGTAGTTCTTGGT+GGG | - | chr1_4:11353652-11353671 | Msa0150100:CDS | 45.0% | |
| AGATGTGGTCAAGTAGCTTC+TGG | + | chr1_4:11354176-11354195 | None:intergenic | 45.0% | |
| ! | GTGCAGAATTTTGTCCAGTG+AGG | + | chr1_4:11354269-11354288 | None:intergenic | 45.0% |
| GTCAGAAGAGTAGTTGGAGA+CGG | + | chr1_4:11354440-11354459 | None:intergenic | 45.0% | |
| CGTCGGAGGTAGAATAAAAG+TGG | + | chr1_4:11354475-11354494 | None:intergenic | 45.0% | |
| TGGAAGGGATGAATACGGTA+AGG | + | chr1_4:11354539-11354558 | None:intergenic | 45.0% | |
| GGTGACAATGCAATTTGGTC+AGG | + | chr1_4:11354609-11354628 | None:intergenic | 45.0% | |
| TGCTAACATCCCTCACTAAG+AGG | + | chr1_4:11355094-11355113 | None:intergenic | 45.0% | |
| ACTACTGAGCCGAGATCTTA+TGG | - | chr1_4:11355683-11355702 | Msa0150100:intron | 45.0% | |
| ACTTCAACGTTGTCATGCAG+AGG | - | chr1_4:11355878-11355897 | Msa0150100:intron | 45.0% | |
| TTGTCATGCAGAGGAATTGC+TGG | - | chr1_4:11355887-11355906 | Msa0150100:intron | 45.0% | |
| GAGGAATTGCTGGAAAACAC+AGG | - | chr1_4:11355897-11355916 | Msa0150100:intron | 45.0% | |
| CAGGATAGCTGGTGAAGATT+AGG | + | chr1_4:11356004-11356023 | None:intergenic | 45.0% | |
| ACTAAACCAACATGTGTGGG+AGG | - | chr1_4:11356349-11356368 | Msa0150100:CDS | 45.0% | |
| ! | AGTATGGTGCTAAGCCACAT+TGG | - | chr1_4:11356396-11356415 | Msa0150100:CDS | 45.0% |
| ! | GTATGGTGCTAAGCCACATT+GGG | - | chr1_4:11356397-11356416 | Msa0150100:CDS | 45.0% |
| AGCCACATTGGGCTAAGAAT+AGG | - | chr1_4:11356408-11356427 | Msa0150100:CDS | 45.0% | |
| GATCCACAAGATGTGTTCTC+TGG | - | chr1_4:11356503-11356522 | Msa0150100:CDS | 45.0% | |
| TCACCAGAGAACACATCTTG+TGG | + | chr1_4:11356509-11356528 | None:intergenic | 45.0% | |
| ! | TTTGATGGCTGTGCTTTGGA+AGG | - | chr1_4:11356569-11356588 | Msa0150100:CDS | 45.0% |
| !!! | TTTAAATTTTATAAAGTTTT+GGG | + | chr1_4:11354630-11354649 | None:intergenic | 5.0% |
| !!! | TTTTAAATTTTATAAAGTTT+TGG | + | chr1_4:11354631-11354650 | None:intergenic | 5.0% |
| CACCACAATCATCACCCACA+TGG | - | chr1_4:11353121-11353140 | Msa0150100:three_prime_UTR | 50.0% | |
| AGCCATGTGGGTGATGATTG+TGG | + | chr1_4:11353126-11353145 | None:intergenic | 50.0% | |
| ! | GGGTTTGGTCCTATGAACAG+TGG | + | chr1_4:11353197-11353216 | None:intergenic | 50.0% |
| ! | GTTTGGTGGCTGCACCTTAT+TGG | - | chr1_4:11353594-11353613 | Msa0150100:CDS | 50.0% |
| CTGGTGCACATGGTAGTTCT+TGG | - | chr1_4:11353648-11353667 | Msa0150100:CDS | 50.0% | |
| GTGCACATGGTAGTTCTTGG+TGG | - | chr1_4:11353651-11353670 | Msa0150100:CDS | 50.0% | |
| GCACATGGTAGTTCTTGGTG+GGG | - | chr1_4:11353653-11353672 | Msa0150100:CDS | 50.0% | |
| !!! | AGTTTTGGGTGCCATCTCCA+AGG | - | chr1_4:11353811-11353830 | Msa0150100:CDS | 50.0% |
| GGACGAAGGCAAAGGATTCT+CGG | + | chr1_4:11354155-11354174 | None:intergenic | 50.0% | |
| TAGCTTCTGGACGAAGGCAA+AGG | + | chr1_4:11354163-11354182 | None:intergenic | 50.0% | |
| GTCAAGTAGCTTCTGGACGA+AGG | + | chr1_4:11354169-11354188 | None:intergenic | 50.0% | |
| AGAGGTTCAGTTGCAGGAAG+GGG | + | chr1_4:11354203-11354222 | None:intergenic | 50.0% | |
| CAGAGGTTCAGTTGCAGGAA+GGG | + | chr1_4:11354204-11354223 | None:intergenic | 50.0% | |
| ACAGAGGTTCAGTTGCAGGA+AGG | + | chr1_4:11354205-11354224 | None:intergenic | 50.0% | |
| GTTGACAGAGGTTCAGTTGC+AGG | + | chr1_4:11354209-11354228 | None:intergenic | 50.0% | |
| GATTCACTCCTCTTCCTCAC+TGG | - | chr1_4:11354252-11354271 | Msa0150100:intron | 50.0% | |
| CAGCTGGTACACAGCAGAAA+TGG | + | chr1_4:11354303-11354322 | None:intergenic | 50.0% | |
| CATGAGTGATGCGCCTTTGT+CGG | - | chr1_4:11354336-11354355 | Msa0150100:intron | 50.0% | |
| !! | CAATTTGGTGGTGCTCCGAT+TGG | + | chr1_4:11354503-11354522 | None:intergenic | 50.0% |
| GGATTGACTACCTTTGTGGC+TGG | - | chr1_4:11354788-11354807 | Msa0150100:CDS | 50.0% | |
| !! | CCATCACCAGAGGCATCAAA+GGG | + | chr1_4:11355332-11355351 | None:intergenic | 50.0% |
| !! | TCCATCACCAGAGGCATCAA+AGG | + | chr1_4:11355333-11355352 | None:intergenic | 50.0% |
| ATCGTAGACTCCATCACCAG+AGG | + | chr1_4:11355342-11355361 | None:intergenic | 50.0% | |
| TCTCAGTCAGTTAGAGCAGC+AGG | - | chr1_4:11355395-11355414 | Msa0150100:intron | 50.0% | |
| CCAATTCCTCCCACACATGT+TGG | + | chr1_4:11356358-11356377 | None:intergenic | 50.0% | |
| CCAACATGTGTGGGAGGAAT+TGG | - | chr1_4:11356355-11356374 | Msa0150100:CDS | 50.0% | |
| GTGGCTGCACCTTATTGGGA+AGG | - | chr1_4:11353599-11353618 | Msa0150100:CDS | 55.0% | |
| GGTAGTTCTTGGTGGGGCAA+AGG | - | chr1_4:11353659-11353678 | Msa0150100:CDS | 55.0% | |
| AGTTCTTGGTGGGGCAAAGG+TGG | - | chr1_4:11353662-11353681 | Msa0150100:CDS | 55.0% | |
| TACAGCAGCTCGGCGTTTGT+GGG | + | chr1_4:11354061-11354080 | None:intergenic | 55.0% | |
| TTACAGCAGCTCGGCGTTTG+TGG | + | chr1_4:11354062-11354081 | None:intergenic | 55.0% | |
| !! | AGCAGAAATGGCGCTGGTTC+TGG | + | chr1_4:11354291-11354310 | None:intergenic | 55.0% |
| GTACACAGCAGAAATGGCGC+TGG | + | chr1_4:11354297-11354316 | None:intergenic | 55.0% | |
| ! | TGGTGGTGCTCCGATTGGAA+GGG | + | chr1_4:11354498-11354517 | None:intergenic | 55.0% |
| !! | TTGGTGGTGCTCCGATTGGA+AGG | + | chr1_4:11354499-11354518 | None:intergenic | 55.0% |
| CGGTGACTTTCCAGCCACAA+AGG | + | chr1_4:11354801-11354820 | None:intergenic | 55.0% | |
| AGGGTTCCCTTTGATGCCTC+TGG | - | chr1_4:11355323-11355342 | Msa0150100:intron | 55.0% | |
| CCCTTTGATGCCTCTGGTGA+TGG | - | chr1_4:11355329-11355348 | Msa0150100:intron | 55.0% | |
| GCAGGAAGGGGTGACAGATG+TGG | + | chr1_4:11354191-11354210 | None:intergenic | 60.0% | |
| ACCTCCGACGCCCTTCCAAT+CGG | - | chr1_4:11354485-11354504 | Msa0150100:intron | 60.0% | |
| ! | TGCTCCGATTGGAAGGGCGT+CGG | + | chr1_4:11354492-11354511 | None:intergenic | 60.0% |
| !! | TCCGATTGGAAGGGCGTCGG+AGG | + | chr1_4:11354489-11354508 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 11353079 | 11356899 | 11353079 | ID=Msa0150100;Name=Msa0150100 |
| chr1_4 | mRNA | 11353079 | 11356899 | 11353079 | ID=Msa0150100-mRNA-1;Parent=Msa0150100;Name=Msa0150100-mRNA-1;_AED=0.07;_eAED=0.07;_QI=61|1|1|1|1|1|3|175|591 |
| chr1_4 | exon | 11353079 | 11354080 | 11353079 | ID=Msa0150100-mRNA-1:exon:4691;Parent=Msa0150100-mRNA-1 |
| chr1_4 | exon | 11354562 | 11354817 | 11354562 | ID=Msa0150100-mRNA-1:exon:4690;Parent=Msa0150100-mRNA-1 |
| chr1_4 | exon | 11356146 | 11356899 | 11356146 | ID=Msa0150100-mRNA-1:exon:4689;Parent=Msa0150100-mRNA-1 |
| chr1_4 | five_prime_UTR | 11356839 | 11356899 | 11356839 | ID=Msa0150100-mRNA-1:five_prime_utr;Parent=Msa0150100-mRNA-1 |
| chr1_4 | CDS | 11356146 | 11356838 | 11356146 | ID=Msa0150100-mRNA-1:cds;Parent=Msa0150100-mRNA-1 |
| chr1_4 | CDS | 11354562 | 11354817 | 11354562 | ID=Msa0150100-mRNA-1:cds;Parent=Msa0150100-mRNA-1 |
| chr1_4 | CDS | 11353254 | 11354080 | 11353254 | ID=Msa0150100-mRNA-1:cds;Parent=Msa0150100-mRNA-1 |
| chr1_4 | three_prime_UTR | 11353079 | 11353253 | 11353079 | ID=Msa0150100-mRNA-1:three_prime_utr;Parent=Msa0150100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
