Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058850 | sp|Q9LYD8|GGLO3_ARATH | 59.425 | 557 | 175 | 4 | 28 | 535 | 22 | 576 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058850 | A0A1S2Y2S8 | 74.539 | 597 | 96 | 3 | 4 | 547 | 5 | 598 | 0.0 | 905 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008620 | Msa0058850 | 0.857555 | 1.506687e-62 | -8.615850e-47 |
| Msa0008880 | Msa0058850 | 0.836578 | 8.621179e-57 | -8.615850e-47 |
| Msa0058850 | Msa0058910 | 0.853771 | 1.916746e-61 | -8.615850e-47 |
| Msa0058850 | Msa0103720 | 0.833713 | 4.553578e-56 | -8.615850e-47 |
| Msa0058850 | Msa0150100 | 0.952614 | 1.654624e-110 | -8.615850e-47 |
| Msa0058850 | Msa0150150 | 0.861726 | 8.377720e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058850 | MtrunA17_Chr1g0157561 | 92.778 | 360 | 26 | 0 | 187 | 546 | 19 | 378 | 0.0 | 702 |
| Msa0058850 | MtrunA17_Chr8g0346061 | 43.455 | 573 | 269 | 6 | 14 | 534 | 10 | 579 | 5.14e-169 | 491 |
| Msa0058850 | MtrunA17_Chr5g0394031 | 44.186 | 559 | 258 | 6 | 28 | 535 | 28 | 583 | 1.85e-157 | 462 |
| Msa0058850 | MtrunA17_Chr1g0157571 | 93.617 | 188 | 12 | 0 | 1 | 188 | 1 | 188 | 1.67e-127 | 372 |
| Msa0058850 | MtrunA17_Chr1g0157541 | 91.111 | 135 | 12 | 0 | 322 | 456 | 1 | 135 | 8.28e-85 | 259 |
| Msa0058850 | MtrunA17_Chr1g0172001 | 88.462 | 78 | 9 | 0 | 360 | 437 | 11 | 88 | 5.28e-42 | 145 |
| Msa0058850 | MtrunA17_Chr7g0276181 | 47.059 | 136 | 70 | 1 | 402 | 535 | 16 | 151 | 1.77e-36 | 133 |
| Msa0058850 | MtrunA17_Chr7g0276161 | 42.373 | 118 | 66 | 1 | 30 | 145 | 27 | 144 | 2.26e-27 | 107 |
| Msa0058850 | MtrunA17_Chr1g0159391 | 82.143 | 56 | 9 | 1 | 466 | 520 | 10 | 65 | 1.12e-24 | 99.4 |
| Msa0058850 | MtrunA17_Chr8g0346041 | 55.556 | 54 | 24 | 0 | 407 | 460 | 3 | 56 | 2.15e-15 | 70.5 |
| Msa0058850 | MtrunA17_Chr8g0346031 | 35.652 | 115 | 55 | 2 | 163 | 258 | 12 | 126 | 3.44e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058850 | AT5G11540.1 | 59.425 | 557 | 175 | 4 | 28 | 535 | 22 | 576 | 0.0 | 674 |
| Msa0058850 | AT2G46740.1 | 41.918 | 563 | 270 | 6 | 27 | 534 | 25 | 585 | 1.88e-160 | 470 |
| Msa0058850 | AT2G46750.1 | 42.096 | 563 | 269 | 6 | 27 | 534 | 21 | 581 | 5.84e-158 | 464 |
| Msa0058850 | AT2G46760.1 | 40.657 | 578 | 286 | 6 | 9 | 534 | 17 | 589 | 2.32e-157 | 462 |
| Msa0058850 | AT1G32300.1 | 40.502 | 558 | 277 | 6 | 30 | 534 | 18 | 573 | 2.41e-144 | 429 |
| Msa0058850 | AT5G56490.1 | 40.853 | 563 | 278 | 6 | 30 | 539 | 17 | 577 | 4.57e-144 | 427 |
| Msa0058850 | AT5G56470.1 | 49.153 | 236 | 115 | 3 | 304 | 534 | 12 | 247 | 2.39e-78 | 247 |
Find 94 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTATAGATACGATTTC+AGG | 0.197781 | 1_2:-15521549 | Msa0058850:CDS |
| TTGTTGGGTATGTTACATTT+AGG | 0.199389 | 1_2:+15523391 | None:intergenic |
| GTTTGGTGGCTGCACCTTAT+TGG | 0.236643 | 1_2:-15523119 | Msa0058850:CDS |
| TGTTGGGTATGTTACATTTA+GGG | 0.279673 | 1_2:+15523392 | None:intergenic |
| ATTATTCATTGAAGTGAATA+AGG | 0.280510 | 1_2:+15520145 | None:intergenic |
| TTCACCAGCTATCCTGTAAT+TGG | 0.282501 | 1_2:-15520844 | Msa0058850:CDS |
| AGACATTGTAGTCCTCAAAA+AGG | 0.283988 | 1_2:-15520238 | Msa0058850:CDS |
| TGTTGTGGGCATGATAGTTT+TGG | 0.285024 | 1_2:+15523282 | None:intergenic |
| CCAACATGTGTGGGAGGAAT+TGG | 0.289690 | 1_2:-15520497 | Msa0058850:CDS |
| TTTGGTGGCTGCACCTTATT+GGG | 0.293408 | 1_2:-15523118 | Msa0058850:CDS |
| GGAGTTATGCTATGGATTAA+AGG | 0.297527 | 1_2:+15523498 | None:intergenic |
| TTTCCTTGATAGCCAATTAC+AGG | 0.297690 | 1_2:+15520832 | None:intergenic |
| GGTTTAGTCTAGGAGTAAAT+TGG | 0.312203 | 1_2:+15520518 | None:intergenic |
| GCATGGGATCCAAGAATAAA+AGG | 0.315226 | 1_2:-15520757 | Msa0058850:CDS |
| TAAACAGATGTGTGCCTTGA+TGG | 0.324511 | 1_2:+15521565 | None:intergenic |
| TTGACTGTAACAGTTGATTC+AGG | 0.326698 | 1_2:-15523189 | Msa0058850:CDS |
| TGTGGCATAGACATCTATAA+TGG | 0.334215 | 1_2:-15520634 | Msa0058850:CDS |
| CCCTTTGATGCCTCTGGTGA+TGG | 0.359842 | 1_2:-15521523 | Msa0058850:CDS |
| AGGGTTCCCTTTGATGCCTC+TGG | 0.360296 | 1_2:-15521529 | Msa0058850:CDS |
| GATGGAGTCTACGATTTCAT+TGG | 0.370849 | 1_2:-15521505 | Msa0058850:CDS |
| CGAAGTTGTTCTTCTGTTGT+TGG | 0.372174 | 1_2:+15523375 | None:intergenic |
| CTGAGAGACCAGTATTTCAT+TGG | 0.374536 | 1_2:+15521474 | None:intergenic |
| GAGTTATGCTATGGATTAAA+GGG | 0.379012 | 1_2:+15523499 | None:intergenic |
| TTTGAAGGGTGCAGATTGTT+TGG | 0.385906 | 1_2:+15523454 | None:intergenic |
| GATTGTTTGGTTGCATTGGA+TGG | 0.395081 | 1_2:+15523467 | None:intergenic |
| CACATACTTCCACTATTCAT+AGG | 0.396512 | 1_2:-15523528 | Msa0058850:CDS |
| CAGGATAGCTGGTGAAGATT+AGG | 0.398140 | 1_2:+15520851 | None:intergenic |
| ATTTCAAGCCAATGAAATAC+TGG | 0.405185 | 1_2:-15521482 | Msa0058850:CDS |
| TATTGGGAAGGTGTTACAAT+TGG | 0.410864 | 1_2:-15523102 | Msa0058850:CDS |
| TGCAGATTGTTTGGTTGCAT+TGG | 0.412058 | 1_2:+15523463 | None:intergenic |
| TGGGAAGGTGTTACAATTGG+AGG | 0.412609 | 1_2:-15523099 | Msa0058850:CDS |
| ATGCTATGGATTAAAGGGTT+TGG | 0.417400 | 1_2:+15523504 | None:intergenic |
| ATTGTAACACCTTCCCAATA+AGG | 0.428496 | 1_2:+15523105 | None:intergenic |
| AAGGAATTGGTAAAATTTGA+TGG | 0.430551 | 1_2:-15520298 | Msa0058850:CDS |
| GCCATTGTTCTTCAAACCAT+TGG | 0.432966 | 1_2:+15520873 | None:intergenic |
| ACAAGGAAGCTAAAGTTTGT+AGG | 0.446243 | 1_2:-15520189 | Msa0058850:CDS |
| TTGTCATGCAGAGGAATTGC+TGG | 0.454579 | 1_2:-15520965 | Msa0058850:intron |
| ATGAGTTTGCGGACATAACT+TGG | 0.456119 | 1_2:-15521591 | Msa0058850:CDS |
| ATTGGAGGTGTTATTAGTAC+TGG | 0.462333 | 1_2:-15523084 | Msa0058850:CDS |
| TGCACATGGTAGTTCTTGGT+GGG | 0.463800 | 1_2:-15523061 | Msa0058850:CDS |
| TATCCTGTAATTGGCTATCA+AGG | 0.465109 | 1_2:-15520835 | Msa0058850:CDS |
| TTGCATTGGATGGGAGATTG+TGG | 0.467626 | 1_2:+15523477 | None:intergenic |
| GTGCACATGGTAGTTCTTGG+TGG | 0.467984 | 1_2:-15523062 | Msa0058850:CDS |
| GAAGTTGTTCTTCTGTTGTT+GGG | 0.468307 | 1_2:+15523376 | None:intergenic |
| TAAAATCCACCACATCCAAT+AGG | 0.468753 | 1_2:+15523560 | None:intergenic |
| AAAATTTGATGGCTGTGCTT+TGG | 0.471057 | 1_2:-15520287 | Msa0058850:CDS |
| TCTCAGTCAGTTAGAGCAGC+AGG | 0.472911 | 1_2:-15521457 | Msa0058850:intron |
| TTCAAGAAATTAACAGCCAA+TGG | 0.477497 | 1_2:-15520889 | Msa0058850:CDS |
| CTGGTGCACATGGTAGTTCT+TGG | 0.479918 | 1_2:-15523065 | Msa0058850:CDS |
| AAAGGGTATTATTGTAGTCA+TGG | 0.480600 | 1_2:-15520220 | Msa0058850:CDS |
| AAAGCCTCAGAAGCATATCT+AGG | 0.484079 | 1_2:-15520592 | Msa0058850:CDS |
| TTAACAGCATCCACTACATT+GGG | 0.484270 | 1_2:-15520913 | Msa0058850:CDS |
| CACACATGTTGGTTTAGTCT+AGG | 0.492277 | 1_2:+15520508 | None:intergenic |
| AGCCACATTGGGCTAAGAAT+AGG | 0.494478 | 1_2:-15520444 | Msa0058850:CDS |
| AAAACACAGGAAACACGAAC+GGG | 0.494628 | 1_2:-15520942 | Msa0058850:CDS |
| TCCATCACCAGAGGCATCAA+AGG | 0.497174 | 1_2:+15521522 | None:intergenic |
| ATAGCCAATTACAGGATAGC+TGG | 0.501448 | 1_2:+15520840 | None:intergenic |
| TGTTTATAGATACGATTTCA+GGG | 0.502251 | 1_2:-15521548 | Msa0058850:CDS |
| CCAATTCCTCCCACACATGT+TGG | 0.505894 | 1_2:+15520497 | None:intergenic |
| GGGTTTGGTCCTATGAATAG+TGG | 0.508529 | 1_2:+15523519 | None:intergenic |
| GGTAGTTCTTGGTGGGGCAA+AGG | 0.509312 | 1_2:-15523054 | Msa0058850:CDS |
| CTTAACAGCATCCACTACAT+TGG | 0.511042 | 1_2:-15520914 | Msa0058850:CDS |
| AGTTCTTGGTGGGGCAAAGG+TGG | 0.513089 | 1_2:-15523051 | Msa0058850:CDS |
| TTACTACCTATTGGATGTGG+TGG | 0.517825 | 1_2:-15523566 | Msa0058850:CDS |
| GTATGGTGCTAAGCCACATT+GGG | 0.518685 | 1_2:-15520455 | Msa0058850:CDS |
| TTCAAAACTCGTACGGCACA+TGG | 0.525730 | 1_2:-15523437 | Msa0058850:CDS |
| TTTCTTGAATCCCAATGTAG+TGG | 0.532470 | 1_2:+15520903 | None:intergenic |
| GTGGCTGCACCTTATTGGGA+AGG | 0.543644 | 1_2:-15523114 | Msa0058850:CDS |
| ATTGTTTGGTTGCATTGGAT+GGG | 0.545187 | 1_2:+15523468 | None:intergenic |
| GATCCACAAGATGTGTTCTC+TGG | 0.545238 | 1_2:-15520349 | Msa0058850:CDS |
| AGTATGGTGCTAAGCCACAT+TGG | 0.547690 | 1_2:-15520456 | Msa0058850:CDS |
| GAATAGACACATCATGTGCA+TGG | 0.549476 | 1_2:-15520774 | Msa0058850:CDS |
| AAGATGTGTTCTCTGGTGAT+TGG | 0.565409 | 1_2:-15520342 | Msa0058850:CDS |
| CCATCACCAGAGGCATCAAA+GGG | 0.568915 | 1_2:+15521523 | None:intergenic |
| ACATAACTTGGTATCCATCA+AGG | 0.570790 | 1_2:-15521579 | Msa0058850:CDS |
| GAAAACACAGGAAACACGAA+CGG | 0.576013 | 1_2:-15520943 | Msa0058850:CDS |
| TGCACCCTTCAAAACTCGTA+CGG | 0.576208 | 1_2:-15523444 | Msa0058850:CDS |
| TGAAGTTATCACTTGAGCAT+AGG | 0.581177 | 1_2:-15521690 | Msa0058850:CDS |
| GCACATGGTAGTTCTTGGTG+GGG | 0.581419 | 1_2:-15523060 | Msa0058850:CDS |
| TTGTCCTAGATATGCTTCTG+AGG | 0.582676 | 1_2:+15520588 | None:intergenic |
| TCACCAGAGAACACATCTTG+TGG | 0.585752 | 1_2:+15520346 | None:intergenic |
| GAGATTGTGGAGTTATGCTA+TGG | 0.590139 | 1_2:+15523490 | None:intergenic |
| TTTGATGGCTGTGCTTTGGA+AGG | 0.590529 | 1_2:-15520283 | Msa0058850:CDS |
| TAGTCATGGATTTGTCTACA+AGG | 0.591323 | 1_2:-15520206 | Msa0058850:CDS |
| AATAGACACATCATGTGCAT+GGG | 0.601730 | 1_2:-15520773 | Msa0058850:CDS |
| GCCAATGGTTTGAAGAACAA+TGG | 0.605151 | 1_2:-15520874 | Msa0058850:CDS |
| TAGACTAAACCAACATGTGT+GGG | 0.608955 | 1_2:-15520506 | Msa0058850:CDS |
| GTTATTAGTACTGGTGCACA+TGG | 0.614209 | 1_2:-15523075 | Msa0058850:CDS |
| TTCCTATTCTTAGCCCAATG+TGG | 0.624843 | 1_2:+15520442 | None:intergenic |
| CTAGACTAAACCAACATGTG+TGG | 0.630678 | 1_2:-15520507 | Msa0058850:CDS |
| GAGGAATTGCTGGAAAACAC+AGG | 0.634296 | 1_2:-15520955 | Msa0058850:CDS |
| TCTAGGACAATCAGAAGACT+CGG | 0.645708 | 1_2:-15520575 | Msa0058850:CDS |
| ACTAAACCAACATGTGTGGG+AGG | 0.649890 | 1_2:-15520503 | Msa0058850:CDS |
| ATCGTAGACTCCATCACCAG+AGG | 0.678389 | 1_2:+15521513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAAAAACTTCGAAA+AGG | - | chr1_2:15522436-15522455 | Msa0058850:intron | 15.0% |
| !!! | TTTTTAAAAAACTTCGAAAA+GGG | - | chr1_2:15522437-15522456 | Msa0058850:intron | 15.0% |
| !!! | TTTTTGGTATTTTGAAAAAT+CGG | + | chr1_2:15522659-15522678 | None:intergenic | 15.0% |
| !! | TCAATAAAAAGATTAAAGTT+AGG | + | chr1_2:15523338-15523357 | None:intergenic | 15.0% |
| !! | ATTGGATATTGTTCAAATAT+CGG | - | chr1_2:15521247-15521266 | Msa0058850:intron | 20.0% |
| !! | TTTAAGAGAGTTTATTATTG+AGG | - | chr1_2:15521522-15521541 | Msa0058850:CDS | 20.0% |
| !! | TTAAGAGAGTTTATTATTGA+GGG | - | chr1_2:15521523-15521542 | Msa0058850:CDS | 20.0% |
| !! | ATGTAATTACTGTAATTAAG+AGG | + | chr1_2:15521856-15521875 | None:intergenic | 20.0% |
| !! | TATTTGTAAAGTAACTTCTT+CGG | + | chr1_2:15521912-15521931 | None:intergenic | 20.0% |
| !! | ATAACCAAATAAAGATGATA+AGG | - | chr1_2:15522351-15522370 | Msa0058850:intron | 20.0% |
| !! | AAAACCTTATCATCTTTATT+TGG | + | chr1_2:15522358-15522377 | None:intergenic | 20.0% |
| !!! | TCGAAGTTTTTTAAAAAAGT+TGG | + | chr1_2:15522434-15522453 | None:intergenic | 20.0% |
| !!! | ATTTGACTTTATAACTTCAA+GGG | + | chr1_2:15522530-15522549 | None:intergenic | 20.0% |
| !!! | AATTTGACTTTATAACTTCA+AGG | + | chr1_2:15522531-15522550 | None:intergenic | 20.0% |
| !! | CAATAAATAAACTAAAGACA+AGG | - | chr1_2:15522582-15522601 | Msa0058850:intron | 20.0% |
| !!! | ATAAATCCACAAAATTTTTG+TGG | - | chr1_2:15523071-15523090 | Msa0058850:CDS | 20.0% |
| !! | TATTGAAGCTAAAAAACAAA+TGG | - | chr1_2:15523352-15523371 | Msa0058850:CDS | 20.0% |
| !! | TGAGAATTTTGTGACAATTT+TGG | + | chr1_2:15520412-15520431 | None:intergenic | 25.0% |
| !!! | CATGATTATTGTTTTGTTGT+GGG | + | chr1_2:15520458-15520477 | None:intergenic | 25.0% |
| ! | ATTGATGAAGTTGAGAAAAA+TGG | - | chr1_2:15520576-15520595 | Msa0058850:CDS | 25.0% |
| !! | TGAGAAAAATGGATTTAGTT+TGG | - | chr1_2:15520587-15520606 | Msa0058850:CDS | 25.0% |
| !! | CCTAAAAAATCAGTTTGTTT+CGG | + | chr1_2:15520897-15520916 | None:intergenic | 25.0% |
| !!! | CGAAACAAACTGATTTTTTA+GGG | - | chr1_2:15520895-15520914 | Msa0058850:CDS | 25.0% |
| !!! | GAAACAAACTGATTTTTTAG+GGG | - | chr1_2:15520896-15520915 | Msa0058850:CDS | 25.0% |
| ! | GGATTGATAAAGTTTACATA+TGG | + | chr1_2:15521459-15521478 | None:intergenic | 25.0% |
| ! | AGAAAAATTGGTAAATTGGT+TGG | + | chr1_2:15521597-15521616 | None:intergenic | 25.0% |
| ! | CAACAGAAAAATTGGTAAAT+TGG | + | chr1_2:15521601-15521620 | None:intergenic | 25.0% |
| ! | AAGATAAGCAACAGAAAAAT+TGG | + | chr1_2:15521609-15521628 | None:intergenic | 25.0% |
| ! | GTAATTACATAGTACTATGT+AGG | - | chr1_2:15521866-15521885 | Msa0058850:intron | 25.0% |
| ! | TATCATTGTTAAATGATGTC+AGG | - | chr1_2:15522010-15522029 | Msa0058850:intron | 25.0% |
| ! | TGTTTATAGATACGATTTCA+GGG | - | chr1_2:15522175-15522194 | Msa0058850:intron | 25.0% |
| ! | TTGGTTATTACTTACTAAGA+AGG | + | chr1_2:15522415-15522434 | None:intergenic | 25.0% |
| !! | GATCATTTTACAATTGTCTT+CGG | - | chr1_2:15522487-15522506 | Msa0058850:intron | 25.0% |
| ! | CAACGTTGAAGTTATATTAT+AGG | + | chr1_2:15522741-15522760 | None:intergenic | 25.0% |
| !! | AAGAACAATCCTTTTATTCT+TGG | + | chr1_2:15522978-15522997 | None:intergenic | 25.0% |
| ! | AAGGAATTGGTAAAATTTGA+TGG | - | chr1_2:15523425-15523444 | Msa0058850:CDS | 25.0% |
| ! | GAGTTATGCTATGGATTAAA+GGG | + | chr1_2:15520227-15520246 | None:intergenic | 30.0% |
| TGTTGGGTATGTTACATTTA+GGG | + | chr1_2:15520334-15520353 | None:intergenic | 30.0% | |
| TTGTTGGGTATGTTACATTT+AGG | + | chr1_2:15520335-15520354 | None:intergenic | 30.0% | |
| !!! | AAGGTTGTTTTGAACAACAT+AGG | + | chr1_2:15520385-15520404 | None:intergenic | 30.0% |
| !! | GCATGATTATTGTTTTGTTG+TGG | + | chr1_2:15520459-15520478 | None:intergenic | 30.0% |
| !! | GAAAAATGGATTTAGTTTGG+TGG | - | chr1_2:15520590-15520609 | Msa0058850:CDS | 30.0% |
| ! | AAAAAGGTCTTTTGCTTTGA+CGG | + | chr1_2:15520728-15520747 | None:intergenic | 30.0% |
| AATTGCAGAAAGACTCAAAA+AGG | + | chr1_2:15520744-15520763 | None:intergenic | 30.0% | |
| ! | TATTGTGTCTTTTGCTTTGA+CGG | + | chr1_2:15520795-15520814 | None:intergenic | 30.0% |
| GGTGGTAATTATTTCAGAAT+AGG | + | chr1_2:15520876-15520895 | None:intergenic | 30.0% | |
| ! | AAAAAATCAGTTTGTTTCGG+TGG | + | chr1_2:15520894-15520913 | None:intergenic | 30.0% |
| !!! | CCGAAACAAACTGATTTTTT+AGG | - | chr1_2:15520894-15520913 | Msa0058850:CDS | 30.0% |
| !!! | TAGAATTTTTTACAGCAGCT+CGG | + | chr1_2:15520942-15520961 | None:intergenic | 30.0% |
| TTATTGCAAGACCTATAGTT+TGG | + | chr1_2:15521280-15521299 | None:intergenic | 30.0% | |
| TAGGTCTTGCAATAATAATG+TGG | - | chr1_2:15521285-15521304 | Msa0058850:intron | 30.0% | |
| AAAAAATGCTCTGATTGGAA+GGG | + | chr1_2:15521425-15521444 | None:intergenic | 30.0% | |
| ACATGCATTTAATGATCTCT+TGG | + | chr1_2:15521554-15521573 | None:intergenic | 30.0% | |
| TCAATCCATTTCCTTCAAAA+TGG | + | chr1_2:15521646-15521665 | None:intergenic | 30.0% | |
| ! | ATTAATCGACTTCTTGAAGA+CGG | + | chr1_2:15521810-15521829 | None:intergenic | 30.0% |
| ! | TAATTTTTCACCTCTTAGTG+AGG | - | chr1_2:15521952-15521971 | Msa0058850:intron | 30.0% |
| ! | AATTTTTCACCTCTTAGTGA+GGG | - | chr1_2:15521953-15521972 | Msa0058850:intron | 30.0% |
| ! | TGCAAAAAAGTATGAGTTTG+CGG | - | chr1_2:15522121-15522140 | Msa0058850:intron | 30.0% |
| CTGTTTATAGATACGATTTC+AGG | - | chr1_2:15522174-15522193 | Msa0058850:intron | 30.0% | |
| ATTTCAAGCCAATGAAATAC+TGG | - | chr1_2:15522241-15522260 | Msa0058850:intron | 30.0% | |
| !!! | AGATGATAAGGTTTTGTTAC+TGG | - | chr1_2:15522363-15522382 | Msa0058850:intron | 30.0% |
| ! | ATTTTACAATTGTCTTCGGA+GGG | - | chr1_2:15522491-15522510 | Msa0058850:intron | 30.0% |
| ATTGTTACTCCATAAGATCT+CGG | + | chr1_2:15522566-15522585 | None:intergenic | 30.0% | |
| TTCAAGAAATTAACAGCCAA+TGG | - | chr1_2:15522834-15522853 | Msa0058850:intron | 30.0% | |
| ! | ATTTTCCCTGCTTCAAAATT+TGG | - | chr1_2:15523014-15523033 | Msa0058850:intron | 30.0% |
| !!! | AATCTCCAAATTTTGAAGCA+GGG | + | chr1_2:15523022-15523041 | None:intergenic | 30.0% |
| !!! | AAATCTCCAAATTTTGAAGC+AGG | + | chr1_2:15523023-15523042 | None:intergenic | 30.0% |
| ! | TCTATGCCACAAAAATTTTG+TGG | + | chr1_2:15523080-15523099 | None:intergenic | 30.0% |
| !!! | CAGATTGCATTTTTCAAGTA+TGG | - | chr1_2:15523251-15523270 | Msa0058850:CDS | 30.0% |
| ! | CTACAATAATACCCTTTTTG+AGG | + | chr1_2:15523500-15523519 | None:intergenic | 30.0% |
| !! | AAAGGGTATTATTGTAGTCA+TGG | - | chr1_2:15523503-15523522 | Msa0058850:CDS | 30.0% |
| ! | CTTTTACTACCTATTGGATG+TGG | - | chr1_2:15520154-15520173 | Msa0058850:CDS | 35.0% |
| TAAAATCCACCACATCCAAT+AGG | + | chr1_2:15520166-15520185 | None:intergenic | 35.0% | |
| CACATACTTCCACTATTCAT+AGG | - | chr1_2:15520195-15520214 | Msa0058850:CDS | 35.0% | |
| ! | ATGCTATGGATTAAAGGGTT+TGG | + | chr1_2:15520222-15520241 | None:intergenic | 35.0% |
| ! | GGAGTTATGCTATGGATTAA+AGG | + | chr1_2:15520228-15520247 | None:intergenic | 35.0% |
| ATTGTTTGGTTGCATTGGAT+GGG | + | chr1_2:15520258-15520277 | None:intergenic | 35.0% | |
| GAAGTTGTTCTTCTGTTGTT+GGG | + | chr1_2:15520350-15520369 | None:intergenic | 35.0% | |
| !!! | TTGTGACAATTTTGGCTGTA+AGG | + | chr1_2:15520404-15520423 | None:intergenic | 35.0% |
| ! | TTGACTGTAACAGTTGATTC+AGG | - | chr1_2:15520534-15520553 | Msa0058850:CDS | 35.0% |
| ATTGTAACACCTTCCCAATA+AGG | + | chr1_2:15520621-15520640 | None:intergenic | 35.0% | |
| !! | TATTGGGAAGGTGTTACAAT+TGG | - | chr1_2:15520621-15520640 | Msa0058850:CDS | 35.0% |
| !! | ATTGGAGGTGTTATTAGTAC+TGG | - | chr1_2:15520639-15520658 | Msa0058850:CDS | 35.0% |
| ! | GTGCTTTTCATGATCATGTT+TGG | - | chr1_2:15520694-15520713 | Msa0058850:CDS | 35.0% |
| GCAAAAGACACAATATCGTT+TGG | - | chr1_2:15520800-15520819 | Msa0058850:CDS | 35.0% | |
| TTCCAATTCGGGTAGAATTA+TGG | + | chr1_2:15520852-15520871 | None:intergenic | 35.0% | |
| TTCAGAATAGGCTTCCAATT+CGG | + | chr1_2:15520864-15520883 | None:intergenic | 35.0% | |
| CTGAGATTCTGAGTTATACT+AGG | + | chr1_2:15521104-15521123 | None:intergenic | 35.0% | |
| GAGACTATACTGTAAAGGAT+TGG | - | chr1_2:15521229-15521248 | Msa0058850:intron | 35.0% | |
| GAAAAAATGCTCTGATTGGA+AGG | + | chr1_2:15521426-15521445 | None:intergenic | 35.0% | |
| !!! | TCCAATCAGAGCATTTTTTC+TGG | - | chr1_2:15521426-15521445 | Msa0058850:intron | 35.0% |
| TCCAGAAAAAATGCTCTGAT+TGG | + | chr1_2:15521430-15521449 | None:intergenic | 35.0% | |
| !!! | AGAGCATTTTTTCTGGAACT+AGG | - | chr1_2:15521433-15521452 | Msa0058850:intron | 35.0% |
| !! | TTTTGGGTGACAATGCAATT+TGG | + | chr1_2:15521485-15521504 | None:intergenic | 35.0% |
| ! | CATTGTCAACACCATTTTGA+AGG | - | chr1_2:15521632-15521651 | Msa0058850:CDS | 35.0% |
| !! | CAACACCATTTTGAAGGAAA+TGG | - | chr1_2:15521638-15521657 | Msa0058850:CDS | 35.0% |
| !! | AAATGGATTGACTACCTTTG+TGG | - | chr1_2:15521655-15521674 | Msa0058850:CDS | 35.0% |
| TGAAGTTATCACTTGAGCAT+AGG | - | chr1_2:15522033-15522052 | Msa0058850:intron | 35.0% | |
| ACATAACTTGGTATCCATCA+AGG | - | chr1_2:15522144-15522163 | Msa0058850:intron | 35.0% | |
| ! | CATTTTACAATTGTCTTCGG+AGG | - | chr1_2:15522490-15522509 | Msa0058850:intron | 35.0% |
| TGACTTTATAACTTCAAGGG+AGG | + | chr1_2:15522527-15522546 | None:intergenic | 35.0% | |
| TAAATTGCAGATGTGCAGTT+AGG | + | chr1_2:15522688-15522707 | None:intergenic | 35.0% | |
| TTAACAGCATCCACTACATT+GGG | - | chr1_2:15522810-15522829 | Msa0058850:intron | 35.0% | |
| TTTCTTGAATCCCAATGTAG+TGG | + | chr1_2:15522823-15522842 | None:intergenic | 35.0% | |
| TATCCTGTAATTGGCTATCA+AGG | - | chr1_2:15522888-15522907 | Msa0058850:intron | 35.0% | |
| ! | TTTCCTTGATAGCCAATTAC+AGG | + | chr1_2:15522894-15522913 | None:intergenic | 35.0% |
| CAAGGAAAAATGCAAACTTC+AGG | - | chr1_2:15522906-15522925 | Msa0058850:intron | 35.0% | |
| AATAGACACATCATGTGCAT+GGG | - | chr1_2:15522950-15522969 | Msa0058850:intron | 35.0% | |
| TGTGGCATAGACATCTATAA+TGG | - | chr1_2:15523089-15523108 | Msa0058850:CDS | 35.0% | |
| GGTTTAGTCTAGGAGTAAAT+TGG | + | chr1_2:15523208-15523227 | None:intergenic | 35.0% | |
| TAGACTAAACCAACATGTGT+GGG | - | chr1_2:15523217-15523236 | Msa0058850:CDS | 35.0% | |
| ! | TGGTCAGATGAGATTTTGTA+TGG | - | chr1_2:15523401-15523420 | Msa0058850:CDS | 35.0% |
| ! | GGTCAGATGAGATTTTGTAT+GGG | - | chr1_2:15523402-15523421 | Msa0058850:CDS | 35.0% |
| ! | AGATGAGATTTTGTATGGGA+AGG | - | chr1_2:15523406-15523425 | Msa0058850:CDS | 35.0% |
| ! | GATTTTGTATGGGAAGGAAT+TGG | - | chr1_2:15523412-15523431 | Msa0058850:CDS | 35.0% |
| ! | AAAATTTGATGGCTGTGCTT+TGG | - | chr1_2:15523436-15523455 | Msa0058850:CDS | 35.0% |
| AGACATTGTAGTCCTCAAAA+AGG | - | chr1_2:15523485-15523504 | Msa0058850:CDS | 35.0% | |
| GACATTGTAGTCCTCAAAAA+GGG | - | chr1_2:15523486-15523505 | Msa0058850:CDS | 35.0% | |
| TAGTCATGGATTTGTCTACA+AGG | - | chr1_2:15523517-15523536 | Msa0058850:CDS | 35.0% | |
| ACAAGGAAGCTAAAGTTTGT+AGG | - | chr1_2:15523534-15523553 | Msa0058850:CDS | 35.0% | |
| TTACTACCTATTGGATGTGG+TGG | - | chr1_2:15520157-15520176 | Msa0058850:CDS | 40.0% | |
| GAGATTGTGGAGTTATGCTA+TGG | + | chr1_2:15520236-15520255 | None:intergenic | 40.0% | |
| GATTGTTTGGTTGCATTGGA+TGG | + | chr1_2:15520259-15520278 | None:intergenic | 40.0% | |
| TGCAGATTGTTTGGTTGCAT+TGG | + | chr1_2:15520263-15520282 | None:intergenic | 40.0% | |
| ! | TTTGAAGGGTGCAGATTGTT+TGG | + | chr1_2:15520272-15520291 | None:intergenic | 40.0% |
| ! | TTAGGGCATAGCAACTTTTG+CGG | + | chr1_2:15520317-15520336 | None:intergenic | 40.0% |
| CGAAGTTGTTCTTCTGTTGT+TGG | + | chr1_2:15520351-15520370 | None:intergenic | 40.0% | |
| ! | GTTGTGGGCATGATAGTTTT+GGG | + | chr1_2:15520443-15520462 | None:intergenic | 40.0% |
| ! | TGTTGTGGGCATGATAGTTT+TGG | + | chr1_2:15520444-15520463 | None:intergenic | 40.0% |
| !! | GTTATTAGTACTGGTGCACA+TGG | - | chr1_2:15520648-15520667 | Msa0058850:CDS | 40.0% |
| TATGGAGGTGAGGAGTTAAT+CGG | + | chr1_2:15520834-15520853 | None:intergenic | 40.0% | |
| CAATTCGGGTAGAATTATGG+AGG | + | chr1_2:15520849-15520868 | None:intergenic | 40.0% | |
| CTCCATAATTCTACCCGAAT+TGG | - | chr1_2:15520847-15520866 | Msa0058850:CDS | 40.0% | |
| TCAGAATAGGCTTCCAATTC+GGG | + | chr1_2:15520863-15520882 | None:intergenic | 40.0% | |
| !! | GTTATACTAGGTGTTGACAG+AGG | + | chr1_2:15521092-15521111 | None:intergenic | 40.0% |
| ! | AATTTTGTCCAGTGAGGAAG+AGG | + | chr1_2:15521134-15521153 | None:intergenic | 40.0% |
| ATGCAGAAATTTACTGCAGC+TGG | + | chr1_2:15521190-15521209 | None:intergenic | 40.0% | |
| TACAGTATAGTCTCCGACAA+AGG | + | chr1_2:15521223-15521242 | None:intergenic | 40.0% | |
| TGTCGGAGACTATACTGTAA+AGG | - | chr1_2:15521224-15521243 | Msa0058850:intron | 40.0% | |
| ! | TCGGTTGCTTTCCAAACTAT+AGG | - | chr1_2:15521266-15521285 | Msa0058850:intron | 40.0% |
| AAAGCAGTCAGAAGAGTAGT+TGG | + | chr1_2:15521317-15521336 | None:intergenic | 40.0% | |
| TATGGTCAGACTCAATTTGG+TGG | + | chr1_2:15521386-15521405 | None:intergenic | 40.0% | |
| GGTTATGGTCAGACTCAATT+TGG | + | chr1_2:15521389-15521408 | None:intergenic | 40.0% | |
| GGATGAATACGGTAAGGTTA+TGG | + | chr1_2:15521404-15521423 | None:intergenic | 40.0% | |
| CTGATTGGAAGGGATGAATA+CGG | + | chr1_2:15521415-15521434 | None:intergenic | 40.0% | |
| CCGAAGAATACACTAAACTG+CGG | + | chr1_2:15521692-15521711 | None:intergenic | 40.0% | |
| CCGCAGTTTAGTGTATTCTT+CGG | - | chr1_2:15521689-15521708 | Msa0058850:CDS | 40.0% | |
| AACTTCTTCGGTACGTGTAA+AGG | + | chr1_2:15521900-15521919 | None:intergenic | 40.0% | |
| ATGAGTTTGCGGACATAACT+TGG | - | chr1_2:15522132-15522151 | Msa0058850:intron | 40.0% | |
| TAAACAGATGTGTGCCTTGA+TGG | + | chr1_2:15522161-15522180 | None:intergenic | 40.0% | |
| GATGGAGTCTACGATTTCAT+TGG | - | chr1_2:15522218-15522237 | Msa0058850:intron | 40.0% | |
| CTGAGAGACCAGTATTTCAT+TGG | + | chr1_2:15522252-15522271 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTGTTACTGGTGTG+AGG | - | chr1_2:15522370-15522389 | Msa0058850:intron | 40.0% |
| ! | GAAGGTACAATATGACAGTG+AGG | + | chr1_2:15522397-15522416 | None:intergenic | 40.0% |
| ! | TGCAGTTAGGTCGCAATTTT+TGG | + | chr1_2:15522675-15522694 | None:intergenic | 40.0% |
| GAAAACACAGGAAACACGAA+CGG | - | chr1_2:15522780-15522799 | Msa0058850:intron | 40.0% | |
| AAAACACAGGAAACACGAAC+GGG | - | chr1_2:15522781-15522800 | Msa0058850:intron | 40.0% | |
| CTTAACAGCATCCACTACAT+TGG | - | chr1_2:15522809-15522828 | Msa0058850:intron | 40.0% | |
| GCCAATGGTTTGAAGAACAA+TGG | - | chr1_2:15522849-15522868 | Msa0058850:intron | 40.0% | |
| GCCATTGTTCTTCAAACCAT+TGG | + | chr1_2:15522853-15522872 | None:intergenic | 40.0% | |
| TTCACCAGCTATCCTGTAAT+TGG | - | chr1_2:15522879-15522898 | Msa0058850:intron | 40.0% | |
| ATAGCCAATTACAGGATAGC+TGG | + | chr1_2:15522886-15522905 | None:intergenic | 40.0% | |
| GAATAGACACATCATGTGCA+TGG | - | chr1_2:15522949-15522968 | Msa0058850:intron | 40.0% | |
| GCATGGGATCCAAGAATAAA+AGG | - | chr1_2:15522966-15522985 | Msa0058850:intron | 40.0% | |
| ! | AAAGCCTCAGAAGCATATCT+AGG | - | chr1_2:15523131-15523150 | Msa0058850:CDS | 40.0% |
| TTGTCCTAGATATGCTTCTG+AGG | + | chr1_2:15523138-15523157 | None:intergenic | 40.0% | |
| ! | TCTAGGACAATCAGAAGACT+CGG | - | chr1_2:15523148-15523167 | Msa0058850:CDS | 40.0% |
| !! | CACACATGTTGGTTTAGTCT+AGG | + | chr1_2:15523218-15523237 | None:intergenic | 40.0% |
| CTAGACTAAACCAACATGTG+TGG | - | chr1_2:15523216-15523235 | Msa0058850:CDS | 40.0% | |
| TTCCTATTCTTAGCCCAATG+TGG | + | chr1_2:15523284-15523303 | None:intergenic | 40.0% | |
| AAGATGTGTTCTCTGGTGAT+TGG | - | chr1_2:15523381-15523400 | Msa0058850:CDS | 40.0% | |
| ! | GGGTTTGGTCCTATGAATAG+TGG | + | chr1_2:15520207-15520226 | None:intergenic | 45.0% |
| TTGCATTGGATGGGAGATTG+TGG | + | chr1_2:15520249-15520268 | None:intergenic | 45.0% | |
| TGCACCCTTCAAAACTCGTA+CGG | - | chr1_2:15520279-15520298 | Msa0058850:CDS | 45.0% | |
| !!! | TGTGCCGTACGAGTTTTGAA+GGG | + | chr1_2:15520286-15520305 | None:intergenic | 45.0% |
| !! | ATGTGCCGTACGAGTTTTGA+AGG | + | chr1_2:15520287-15520306 | None:intergenic | 45.0% |
| TTCAAAACTCGTACGGCACA+TGG | - | chr1_2:15520286-15520305 | Msa0058850:CDS | 45.0% | |
| ! | TTTGGTGGCTGCACCTTATT+GGG | - | chr1_2:15520605-15520624 | Msa0058850:CDS | 45.0% |
| !! | TGGGAAGGTGTTACAATTGG+AGG | - | chr1_2:15520624-15520643 | Msa0058850:CDS | 45.0% |
| TGCACATGGTAGTTCTTGGT+GGG | - | chr1_2:15520662-15520681 | Msa0058850:CDS | 45.0% | |
| AGATGTGGTCAAGTAGCTTC+TGG | + | chr1_2:15521047-15521066 | None:intergenic | 45.0% | |
| ! | GTGCAGAATTTTGTCCAGTG+AGG | + | chr1_2:15521140-15521159 | None:intergenic | 45.0% |
| GTCAGAAGAGTAGTTGGAGA+CGG | + | chr1_2:15521311-15521330 | None:intergenic | 45.0% | |
| CGTCGGAGGTAGAATAAAAG+TGG | + | chr1_2:15521346-15521365 | None:intergenic | 45.0% | |
| TGGAAGGGATGAATACGGTA+AGG | + | chr1_2:15521410-15521429 | None:intergenic | 45.0% | |
| GGTGACAATGCAATTTGGTC+AGG | + | chr1_2:15521480-15521499 | None:intergenic | 45.0% | |
| TGCTAACATCCCTCACTAAG+AGG | + | chr1_2:15521965-15521984 | None:intergenic | 45.0% | |
| ACTACTGAGCCGAGATCTTA+TGG | - | chr1_2:15522554-15522573 | Msa0058850:intron | 45.0% | |
| ACTTCAACGTTGTCATGCAG+AGG | - | chr1_2:15522749-15522768 | Msa0058850:intron | 45.0% | |
| TTGTCATGCAGAGGAATTGC+TGG | - | chr1_2:15522758-15522777 | Msa0058850:intron | 45.0% | |
| GAGGAATTGCTGGAAAACAC+AGG | - | chr1_2:15522768-15522787 | Msa0058850:intron | 45.0% | |
| CAGGATAGCTGGTGAAGATT+AGG | + | chr1_2:15522875-15522894 | None:intergenic | 45.0% | |
| ACTAAACCAACATGTGTGGG+AGG | - | chr1_2:15523220-15523239 | Msa0058850:CDS | 45.0% | |
| ! | AGTATGGTGCTAAGCCACAT+TGG | - | chr1_2:15523267-15523286 | Msa0058850:CDS | 45.0% |
| ! | GTATGGTGCTAAGCCACATT+GGG | - | chr1_2:15523268-15523287 | Msa0058850:CDS | 45.0% |
| AGCCACATTGGGCTAAGAAT+AGG | - | chr1_2:15523279-15523298 | Msa0058850:CDS | 45.0% | |
| GATCCACAAGATGTGTTCTC+TGG | - | chr1_2:15523374-15523393 | Msa0058850:CDS | 45.0% | |
| TCACCAGAGAACACATCTTG+TGG | + | chr1_2:15523380-15523399 | None:intergenic | 45.0% | |
| ! | TTTGATGGCTGTGCTTTGGA+AGG | - | chr1_2:15523440-15523459 | Msa0058850:CDS | 45.0% |
| !!! | TTTAAATTTTATAAAGTTTT+GGG | + | chr1_2:15521501-15521520 | None:intergenic | 5.0% |
| !!! | TTTTAAATTTTATAAAGTTT+TGG | + | chr1_2:15521502-15521521 | None:intergenic | 5.0% |
| ! | GTTTGGTGGCTGCACCTTAT+TGG | - | chr1_2:15520604-15520623 | Msa0058850:CDS | 50.0% |
| CTGGTGCACATGGTAGTTCT+TGG | - | chr1_2:15520658-15520677 | Msa0058850:CDS | 50.0% | |
| GTGCACATGGTAGTTCTTGG+TGG | - | chr1_2:15520661-15520680 | Msa0058850:CDS | 50.0% | |
| GCACATGGTAGTTCTTGGTG+GGG | - | chr1_2:15520663-15520682 | Msa0058850:CDS | 50.0% | |
| CGGGTAGAATTATGGAGGTG+AGG | + | chr1_2:15520844-15520863 | None:intergenic | 50.0% | |
| GGACGAAGGCAAAGGATTCT+CGG | + | chr1_2:15521026-15521045 | None:intergenic | 50.0% | |
| TAGCTTCTGGACGAAGGCAA+AGG | + | chr1_2:15521034-15521053 | None:intergenic | 50.0% | |
| GTCAAGTAGCTTCTGGACGA+AGG | + | chr1_2:15521040-15521059 | None:intergenic | 50.0% | |
| AGAGGTTCAGTTGCAGGAAG+GGG | + | chr1_2:15521074-15521093 | None:intergenic | 50.0% | |
| CAGAGGTTCAGTTGCAGGAA+GGG | + | chr1_2:15521075-15521094 | None:intergenic | 50.0% | |
| ACAGAGGTTCAGTTGCAGGA+AGG | + | chr1_2:15521076-15521095 | None:intergenic | 50.0% | |
| GTTGACAGAGGTTCAGTTGC+AGG | + | chr1_2:15521080-15521099 | None:intergenic | 50.0% | |
| GATTCACTCCTCTTCCTCAC+TGG | - | chr1_2:15521123-15521142 | Msa0058850:intron | 50.0% | |
| CAGCTGGTACACAGCAGAAA+TGG | + | chr1_2:15521174-15521193 | None:intergenic | 50.0% | |
| CATGAGTGATGCGCCTTTGT+CGG | - | chr1_2:15521207-15521226 | Msa0058850:intron | 50.0% | |
| !! | CAATTTGGTGGTGCTCCGAT+TGG | + | chr1_2:15521374-15521393 | None:intergenic | 50.0% |
| GGATTGACTACCTTTGTGGC+TGG | - | chr1_2:15521659-15521678 | Msa0058850:CDS | 50.0% | |
| !! | CCATCACCAGAGGCATCAAA+GGG | + | chr1_2:15522203-15522222 | None:intergenic | 50.0% |
| !! | TCCATCACCAGAGGCATCAA+AGG | + | chr1_2:15522204-15522223 | None:intergenic | 50.0% |
| ATCGTAGACTCCATCACCAG+AGG | + | chr1_2:15522213-15522232 | None:intergenic | 50.0% | |
| TCTCAGTCAGTTAGAGCAGC+AGG | - | chr1_2:15522266-15522285 | Msa0058850:intron | 50.0% | |
| CCAATTCCTCCCACACATGT+TGG | + | chr1_2:15523229-15523248 | None:intergenic | 50.0% | |
| CCAACATGTGTGGGAGGAAT+TGG | - | chr1_2:15523226-15523245 | Msa0058850:CDS | 50.0% | |
| GTGGCTGCACCTTATTGGGA+AGG | - | chr1_2:15520609-15520628 | Msa0058850:CDS | 55.0% | |
| GGTAGTTCTTGGTGGGGCAA+AGG | - | chr1_2:15520669-15520688 | Msa0058850:CDS | 55.0% | |
| AGTTCTTGGTGGGGCAAAGG+TGG | - | chr1_2:15520672-15520691 | Msa0058850:CDS | 55.0% | |
| TACAGCAGCTCGGCGTTTGT+GGG | + | chr1_2:15520932-15520951 | None:intergenic | 55.0% | |
| TTACAGCAGCTCGGCGTTTG+TGG | + | chr1_2:15520933-15520952 | None:intergenic | 55.0% | |
| !! | AGCAGAAATGGCGCTGGTTC+TGG | + | chr1_2:15521162-15521181 | None:intergenic | 55.0% |
| GTACACAGCAGAAATGGCGC+TGG | + | chr1_2:15521168-15521187 | None:intergenic | 55.0% | |
| ! | TGGTGGTGCTCCGATTGGAA+GGG | + | chr1_2:15521369-15521388 | None:intergenic | 55.0% |
| !! | TTGGTGGTGCTCCGATTGGA+AGG | + | chr1_2:15521370-15521389 | None:intergenic | 55.0% |
| CGGTGACTTTCCAGCCACAA+AGG | + | chr1_2:15521672-15521691 | None:intergenic | 55.0% | |
| AGGGTTCCCTTTGATGCCTC+TGG | - | chr1_2:15522194-15522213 | Msa0058850:intron | 55.0% | |
| CCCTTTGATGCCTCTGGTGA+TGG | - | chr1_2:15522200-15522219 | Msa0058850:intron | 55.0% | |
| GCAGGAAGGGGTGACAGATG+TGG | + | chr1_2:15521062-15521081 | None:intergenic | 60.0% | |
| ACCTCCGACGCCCTTCCAAT+CGG | - | chr1_2:15521356-15521375 | Msa0058850:intron | 60.0% | |
| ! | TGCTCCGATTGGAAGGGCGT+CGG | + | chr1_2:15521363-15521382 | None:intergenic | 60.0% |
| !! | TCCGATTGGAAGGGCGTCGG+AGG | + | chr1_2:15521360-15521379 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15520150 | 15523595 | 15520150 | ID=Msa0058850;Name=Msa0058850 |
| chr1_2 | mRNA | 15520150 | 15523595 | 15520150 | ID=Msa0058850-mRNA-1;Parent=Msa0058850;Name=Msa0058850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0|1|1|1|3|0|547 |
| chr1_2 | exon | 15523035 | 15523595 | 15523035 | ID=Msa0058850-mRNA-1:exon:6271;Parent=Msa0058850-mRNA-1 |
| chr1_2 | exon | 15521458 | 15521713 | 15521458 | ID=Msa0058850-mRNA-1:exon:6270;Parent=Msa0058850-mRNA-1 |
| chr1_2 | exon | 15520150 | 15520976 | 15520150 | ID=Msa0058850-mRNA-1:exon:6269;Parent=Msa0058850-mRNA-1 |
| chr1_2 | CDS | 15523035 | 15523595 | 15523035 | ID=Msa0058850-mRNA-1:cds;Parent=Msa0058850-mRNA-1 |
| chr1_2 | CDS | 15521458 | 15521713 | 15521458 | ID=Msa0058850-mRNA-1:cds;Parent=Msa0058850-mRNA-1 |
| chr1_2 | CDS | 15520150 | 15520976 | 15520150 | ID=Msa0058850-mRNA-1:cds;Parent=Msa0058850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
