Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058910 | sp|Q9LYD8|GGLO3_ARATH | 67.742 | 217 | 67 | 2 | 1 | 214 | 360 | 576 | 3.95e-110 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058910 | A0A396JSQ4 | 94.667 | 225 | 12 | 0 | 1 | 225 | 154 | 378 | 1.08e-156 | 448 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008620 | Msa0058910 | 0.865349 | 6.298677e-65 | -8.615850e-47 |
| Msa0008880 | Msa0058910 | 0.879601 | 1.090538e-69 | -8.615850e-47 |
| Msa0058850 | Msa0058910 | 0.853771 | 1.916746e-61 | -8.615850e-47 |
| Msa0058910 | Msa0103720 | 0.861507 | 9.773923e-64 | -8.615850e-47 |
| Msa0058910 | Msa0150100 | 0.860345 | 2.204238e-63 | -8.615850e-47 |
| Msa0058910 | Msa0150150 | 0.869804 | 2.351998e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058910 | MtrunA17_Chr1g0157561 | 94.667 | 225 | 12 | 0 | 1 | 225 | 154 | 378 | 2.08e-160 | 448 |
| Msa0058910 | MtrunA17_Chr1g0157541 | 92.593 | 135 | 10 | 0 | 1 | 135 | 1 | 135 | 1.93e-90 | 262 |
| Msa0058910 | MtrunA17_Chr8g0346061 | 51.152 | 217 | 102 | 2 | 1 | 213 | 363 | 579 | 5.07e-75 | 237 |
| Msa0058910 | MtrunA17_Chr5g0394031 | 52.752 | 218 | 99 | 2 | 1 | 214 | 366 | 583 | 5.14e-73 | 232 |
| Msa0058910 | MtrunA17_Chr1g0172001 | 89.744 | 78 | 8 | 0 | 39 | 116 | 11 | 88 | 1.44e-45 | 147 |
| Msa0058910 | MtrunA17_Chr7g0276181 | 47.794 | 136 | 69 | 1 | 81 | 214 | 16 | 151 | 5.13e-39 | 132 |
| Msa0058910 | MtrunA17_Chr1g0159391 | 83.929 | 56 | 8 | 1 | 145 | 199 | 10 | 65 | 1.99e-25 | 96.7 |
| Msa0058910 | MtrunA17_Chr8g0346041 | 60.784 | 51 | 20 | 0 | 89 | 139 | 6 | 56 | 1.14e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058910 | AT5G11540.1 | 67.742 | 217 | 67 | 2 | 1 | 214 | 360 | 576 | 4.02e-111 | 330 |
| Msa0058910 | AT2G46740.1 | 49.309 | 217 | 106 | 2 | 1 | 213 | 369 | 585 | 1.02e-75 | 239 |
| Msa0058910 | AT5G56470.1 | 49.083 | 218 | 106 | 3 | 1 | 213 | 30 | 247 | 4.63e-75 | 228 |
| Msa0058910 | AT2G46750.1 | 49.107 | 224 | 110 | 2 | 1 | 220 | 365 | 588 | 2.95e-74 | 236 |
| Msa0058910 | AT2G46760.1 | 49.309 | 217 | 106 | 2 | 1 | 213 | 373 | 589 | 2.57e-73 | 233 |
| Msa0058910 | AT1G32300.1 | 47.534 | 223 | 112 | 3 | 1 | 218 | 356 | 578 | 2.16e-71 | 228 |
| Msa0058910 | AT5G56490.1 | 48.430 | 223 | 110 | 3 | 1 | 218 | 355 | 577 | 5.24e-70 | 224 |
Find 119 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTTTCTCTTGGAGTTT+TGG | 0.192601 | 1_2:-15576083 | Msa0058910:five_prime_UTR |
| CTGTTTATAGATACGATTTC+AGG | 0.197781 | 1_2:-15574405 | Msa0058910:five_prime_UTR |
| GTTTGGTGGCTGCACCTTAT+TGG | 0.236643 | 1_2:-15576285 | Msa0058910:five_prime_UTR |
| TCCATCACCCGAGGCATCTA+AGG | 0.244233 | 1_2:+15574378 | None:intergenic |
| CCAAGATGTGTGGGAGGAAT+TGG | 0.278330 | 1_2:-15573379 | Msa0058910:CDS |
| ATTATTCATTGAAGTGAATA+AGG | 0.280510 | 1_2:+15573027 | None:intergenic |
| TTCACCAGCTATCCTGTAAT+TGG | 0.282501 | 1_2:-15573726 | Msa0058910:five_prime_UTR |
| AGACATTGTAGTCCTCAAAA+AGG | 0.283988 | 1_2:-15573120 | Msa0058910:CDS |
| TGTTGTGGGCATGATAGTTT+TGG | 0.285024 | 1_2:+15576450 | None:intergenic |
| TTTGGTGGCTGCACCTTATT+GGG | 0.293408 | 1_2:-15576284 | Msa0058910:five_prime_UTR |
| GGAGTTATGCTATGGATTAA+AGG | 0.297527 | 1_2:+15576666 | None:intergenic |
| TTTCCTTGATAGCCAATTAC+AGG | 0.297690 | 1_2:+15573714 | None:intergenic |
| TAAACAGCTGTGTGCCTTGA+TGG | 0.304478 | 1_2:+15574421 | None:intergenic |
| GCATGGGATCCAAGAATAAA+AGG | 0.315226 | 1_2:-15573639 | Msa0058910:CDS |
| TTGACTGTAACAGTTGATTC+AGG | 0.326698 | 1_2:-15576355 | Msa0058910:five_prime_UTR |
| CGAAGTTGTTCTTCTGTTGT+TGG | 0.331841 | 1_2:+15576543 | None:intergenic |
| TGTGGCATAGACATCTATAA+TGG | 0.334215 | 1_2:-15573516 | Msa0058910:CDS |
| GTGATAAAGGCAACATTGAT+AGG | 0.342663 | 1_2:+15572910 | None:intergenic |
| GGTTTAATCTAGGAGTAAAT+TGG | 0.346246 | 1_2:+15573400 | None:intergenic |
| GATGGAGTCTATGATTTCAT+TGG | 0.347762 | 1_2:-15574361 | Msa0058910:five_prime_UTR |
| CACACATCTTGGTTTAATCT+AGG | 0.353330 | 1_2:+15573390 | None:intergenic |
| TGCACATGGTGGTTCTTGGT+GGG | 0.364774 | 1_2:-15576227 | Msa0058910:five_prime_UTR |
| CTGAGAGACCAGTATTTCAT+TGG | 0.374536 | 1_2:+15574330 | None:intergenic |
| CCAATTCCTCCCACACATCT+TGG | 0.377015 | 1_2:+15573379 | None:intergenic |
| GAGTTATGCTATGGATTAAA+GGG | 0.379012 | 1_2:+15576667 | None:intergenic |
| AAAGCGAACACACGTGATAA+AGG | 0.384174 | 1_2:+15572886 | None:intergenic |
| TTTGAAGGGTGCAGATTGTT+TGG | 0.385906 | 1_2:+15576622 | None:intergenic |
| CTGGTGCACATGGTGGTTCT+TGG | 0.389923 | 1_2:-15576231 | Msa0058910:five_prime_UTR |
| GTGCACATGGTGGTTCTTGG+TGG | 0.391668 | 1_2:-15576228 | Msa0058910:five_prime_UTR |
| GATTGTTTGGTTGCATTGGA+TGG | 0.395081 | 1_2:+15576635 | None:intergenic |
| CACATACTTCCACTATTCAT+AGG | 0.396512 | 1_2:-15576696 | Msa0058910:five_prime_UTR |
| CAGGATAGCTGGTGAAGATT+AGG | 0.398140 | 1_2:+15573733 | None:intergenic |
| ATTTCAAGCCAATGAAATAC+TGG | 0.405185 | 1_2:-15574338 | Msa0058910:five_prime_UTR |
| ACGTGATAAAGGTGTGATAA+AGG | 0.406426 | 1_2:+15572897 | None:intergenic |
| TTAACAGCATCCACTACATT+GGG | 0.407324 | 1_2:-15573795 | Msa0058910:five_prime_UTR |
| TATTGGGAAGGTGTTACAAT+TGG | 0.410864 | 1_2:-15576268 | Msa0058910:five_prime_UTR |
| TGCAGATTGTTTGGTTGCAT+TGG | 0.412058 | 1_2:+15576631 | None:intergenic |
| TGGGAAGGTGTTACAATTGG+AGG | 0.412609 | 1_2:-15576265 | Msa0058910:five_prime_UTR |
| ATGCTATGGATTAAAGGGTT+TGG | 0.417400 | 1_2:+15576672 | None:intergenic |
| AAAACACAGGAAACACGAAC+GGG | 0.427812 | 1_2:-15573824 | Msa0058910:five_prime_UTR |
| ATTGTAACACCTTCCCAATA+AGG | 0.428496 | 1_2:+15576271 | None:intergenic |
| AAGGAATTGGTAAAATTTGA+TGG | 0.430551 | 1_2:-15573180 | Msa0058910:CDS |
| CCCTTAGATGCCTCGGGTGA+TGG | 0.436878 | 1_2:-15574379 | Msa0058910:five_prime_UTR |
| ACAAGGAAGCTAAAGTTTGT+AGG | 0.446243 | 1_2:-15573071 | Msa0058910:CDS |
| AATGCTGCACAAGTTTCTCT+TGG | 0.447796 | 1_2:-15576091 | Msa0058910:five_prime_UTR |
| GCCACTGTTCTTCAAACCAT+TGG | 0.449401 | 1_2:+15573755 | None:intergenic |
| GGTGGTTCTTGGTGGGGCAA+AGG | 0.451922 | 1_2:-15576220 | Msa0058910:five_prime_UTR |
| TTGTCATGCAGAGGAATTGC+TGG | 0.454579 | 1_2:-15573847 | Msa0058910:intron |
| CAGGGTTCCCTTAGATGCCT+CGG | 0.455777 | 1_2:-15574386 | Msa0058910:five_prime_UTR |
| ATGAGTTTGCGGACATAACT+TGG | 0.456119 | 1_2:-15574447 | Msa0058910:five_prime_UTR |
| GGTTCTTGGTGGGGCAAAGG+TGG | 0.461981 | 1_2:-15576217 | Msa0058910:five_prime_UTR |
| ATTGGAGGTGTTATTAGTAC+TGG | 0.462333 | 1_2:-15576250 | Msa0058910:five_prime_UTR |
| TATCCTGTAATTGGCTATCA+AGG | 0.465109 | 1_2:-15573717 | Msa0058910:five_prime_UTR |
| TTGCATTGGATGGGAGATTG+TGG | 0.467626 | 1_2:+15576645 | None:intergenic |
| TAAAATCCACCACATCCAAT+AGG | 0.468753 | 1_2:+15576728 | None:intergenic |
| AAAATTTGATGGCTGTGCTT+TGG | 0.471057 | 1_2:-15573169 | Msa0058910:CDS |
| TCTCAGTCAGTTAGAGCAGC+AGG | 0.472911 | 1_2:-15574313 | Msa0058910:intron |
| TGATTCCAACCTCAAAACTT+TGG | 0.483399 | 1_2:+15576129 | None:intergenic |
| AAAGCCTCAGAAGCATATCT+AGG | 0.484079 | 1_2:-15573474 | Msa0058910:CDS |
| TAGTAGATATATGAAACAAA+TGG | 0.491909 | 1_2:+15572854 | None:intergenic |
| AGCCACATTGGGCTAAGAAT+AGG | 0.494478 | 1_2:-15573326 | Msa0058910:CDS |
| TTCAAGAAATTAACAGCCAA+TGG | 0.494891 | 1_2:-15573771 | Msa0058910:five_prime_UTR |
| AAAGGGTATTATTGTAGTCA+TGG | 0.500442 | 1_2:-15573102 | Msa0058910:CDS |
| ATAGCCAATTACAGGATAGC+TGG | 0.501448 | 1_2:+15573722 | None:intergenic |
| TGTTTATAGATACGATTTCA+GGG | 0.502251 | 1_2:-15574404 | Msa0058910:five_prime_UTR |
| GGGTTTGGTCCTATGAATAG+TGG | 0.508529 | 1_2:+15576687 | None:intergenic |
| AGGGTTCCCTTAGATGCCTC+GGG | 0.514811 | 1_2:-15574385 | Msa0058910:five_prime_UTR |
| GATCCACAAAATGTGTTCTC+TGG | 0.515327 | 1_2:-15573231 | Msa0058910:CDS |
| TTACTACCTATTGGATGTGG+TGG | 0.517825 | 1_2:-15576734 | Msa0058910:five_prime_UTR |
| GTATGGTGCTAAGCCACATT+GGG | 0.518685 | 1_2:-15573337 | Msa0058910:CDS |
| CTTAACAGCATCCACTACAT+TGG | 0.520030 | 1_2:-15573796 | Msa0058910:five_prime_UTR |
| GAAAGGGTATTGAAATGAAA+GGG | 0.525672 | 1_2:+15576782 | None:intergenic |
| TTCAAAACTCATACGGCACA+TGG | 0.531422 | 1_2:-15576605 | Msa0058910:five_prime_UTR |
| GCACATGGTGGTTCTTGGTG+GGG | 0.532181 | 1_2:-15576226 | Msa0058910:five_prime_UTR |
| TTTCTTGAACCCCAATGTAG+TGG | 0.541654 | 1_2:+15573785 | None:intergenic |
| GTGGCTGCACCTTATTGGGA+AGG | 0.543644 | 1_2:-15576280 | Msa0058910:five_prime_UTR |
| ATTGTTTGGTTGCATTGGAT+GGG | 0.545187 | 1_2:+15576636 | None:intergenic |
| AGTATGGTGCTAAGCCACAT+TGG | 0.547690 | 1_2:-15573338 | Msa0058910:CDS |
| GAATAGACACATCATGTGCA+TGG | 0.549476 | 1_2:-15573656 | Msa0058910:CDS |
| AAAATTGTATACCTTGGAGA+TGG | 0.550760 | 1_2:+15576057 | None:intergenic |
| AAAATGTGTTCTCTGGTGAT+TGG | 0.551456 | 1_2:-15573224 | Msa0058910:CDS |
| GTTCCTAGTTCTGAATCTGA+AGG | 0.558107 | 1_2:-15576157 | Msa0058910:five_prime_UTR |
| TGAAAGGGTATTGAAATGAA+AGG | 0.565709 | 1_2:+15576781 | None:intergenic |
| GGGTGATGATTGTGGTGAAA+GGG | 0.565945 | 1_2:+15576766 | None:intergenic |
| GAAAACACAGGAAACACGAA+CGG | 0.566419 | 1_2:-15573825 | Msa0058910:five_prime_UTR |
| TACCCTTCAGATTCAGAACT+AGG | 0.567964 | 1_2:+15576154 | None:intergenic |
| ACATAACTTGGTATCCATCA+AGG | 0.570790 | 1_2:-15574435 | Msa0058910:five_prime_UTR |
| TAGTCATGGACTTGTCTACA+AGG | 0.572831 | 1_2:-15573088 | Msa0058910:CDS |
| TGCACCCTTCAAAACTCATA+CGG | 0.572982 | 1_2:-15576612 | Msa0058910:five_prime_UTR |
| TGGGTGATGATTGTGGTGAA+AGG | 0.578150 | 1_2:+15576765 | None:intergenic |
| TGAAGTTATCACTTGAGCAT+AGG | 0.581177 | 1_2:-15574546 | Msa0058910:five_prime_UTR |
| TTGTCCTAGATATGCTTCTG+AGG | 0.582676 | 1_2:+15573470 | None:intergenic |
| TGATAAAGGCAACATTGATA+GGG | 0.586753 | 1_2:+15572911 | None:intergenic |
| TAGATTAAACCAAGATGTGT+GGG | 0.587081 | 1_2:-15573388 | Msa0058910:CDS |
| CCATCACCCGAGGCATCTAA+GGG | 0.587726 | 1_2:+15574379 | None:intergenic |
| GAGATTGTGGAGTTATGCTA+TGG | 0.590139 | 1_2:+15576658 | None:intergenic |
| TTTGATGGCTGTGCTTTGGA+AGG | 0.590529 | 1_2:-15573165 | Msa0058910:CDS |
| TTCCTAGTTCTGAATCTGAA+GGG | 0.594559 | 1_2:-15576156 | Msa0058910:five_prime_UTR |
| CTAGATTAAACCAAGATGTG+TGG | 0.597491 | 1_2:-15573389 | Msa0058910:CDS |
| AATAGACACATCATGTGCAT+GGG | 0.601730 | 1_2:-15573655 | Msa0058910:CDS |
| CACCACAATCATCACCCACA+TGG | 0.608207 | 1_2:-15576760 | Msa0058910:five_prime_UTR |
| TTCCTATTCTTAGCCCAATG+TGG | 0.624843 | 1_2:+15573324 | None:intergenic |
| AAAGGCAACATTGATAGGGA+CGG | 0.630900 | 1_2:+15572915 | None:intergenic |
| GAGGAATTGCTGGAAAACAC+AGG | 0.634296 | 1_2:-15573837 | Msa0058910:five_prime_UTR |
| CAACAACAGAAGAACAACTT+CGG | 0.636483 | 1_2:-15576542 | Msa0058910:five_prime_UTR |
| TCTAGGACAATCAGAAGACT+CGG | 0.645708 | 1_2:-15573457 | Msa0058910:CDS |
| ATTAAACCAAGATGTGTGGG+AGG | 0.649296 | 1_2:-15573385 | Msa0058910:CDS |
| GCCAATGGTTTGAAGAACAG+TGG | 0.652622 | 1_2:-15573756 | Msa0058910:five_prime_UTR |
| GTTATTAGTACTGGTGCACA+TGG | 0.653715 | 1_2:-15576241 | Msa0058910:five_prime_UTR |
| AGCCATGTGGGTGATGATTG+TGG | 0.657872 | 1_2:+15576758 | None:intergenic |
| ACTTGTGCAGCATTAAACAA+AGG | 0.660665 | 1_2:+15576100 | None:intergenic |
| AATAGGTAGTAAAAGCCATG+TGG | 0.663153 | 1_2:+15576745 | None:intergenic |
| TAGATATATGAAACAAATGG+AGG | 0.667622 | 1_2:+15572857 | None:intergenic |
| ATCATAGACTCCATCACCCG+AGG | 0.673916 | 1_2:+15574369 | None:intergenic |
| ATTAGTACTGGTGCACATGG+TGG | 0.675037 | 1_2:-15576238 | Msa0058910:five_prime_UTR |
| ATAGGTAGTAAAAGCCATGT+GGG | 0.678509 | 1_2:+15576746 | None:intergenic |
| TAACAGCATCCACTACATTG+GGG | 0.692900 | 1_2:-15573794 | Msa0058910:five_prime_UTR |
| AAACACAGGAAACACGAACG+GGG | 0.704193 | 1_2:-15573823 | Msa0058910:five_prime_UTR |
| CATAACATTCAATTTCACTG+AGG | 0.730952 | 1_2:-15574512 | Msa0058910:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTACAGTTTTAAA+TGG | + | chr1_2:15573713-15573732 | None:intergenic | 10.0% |
| !! | ATAATTCTTGATATCATTAT+AGG | + | chr1_2:15573741-15573760 | None:intergenic | 15.0% |
| !! | ATAACCAATTAAAGATAATA+AGG | - | chr1_2:15575431-15575450 | Msa0058910:intron | 15.0% |
| !! | AAAACCTTATTATCTTTAAT+TGG | + | chr1_2:15575438-15575457 | None:intergenic | 15.0% |
| !!! | TTTTTTAAAAAACTTCGAAA+AGG | - | chr1_2:15575516-15575535 | Msa0058910:intron | 15.0% |
| !!! | TTTTTAAAAAACTTCGAAAA+GGG | - | chr1_2:15575517-15575536 | Msa0058910:intron | 15.0% |
| !!! | TTTTTGGTATTTTGAAAAAT+CGG | + | chr1_2:15575713-15575732 | None:intergenic | 15.0% |
| !! | TCAATAAAAAGATTAAAGTT+AGG | + | chr1_2:15576392-15576411 | None:intergenic | 15.0% |
| !!! | AATTTTGAAAGTTCTCTTAA+AGG | + | chr1_2:15573650-15573669 | None:intergenic | 20.0% |
| !! | ATTGGATATTGTTCAAATAT+CGG | - | chr1_2:15574327-15574346 | Msa0058910:five_prime_UTR | 20.0% |
| !! | AGAAAAATTTGTAAATTGGT+TGG | + | chr1_2:15574677-15574696 | None:intergenic | 20.0% |
| !! | CAACAGAAAAATTTGTAAAT+TGG | + | chr1_2:15574681-15574700 | None:intergenic | 20.0% |
| !! | ATGTAATTACTGTAATTAAG+AGG | + | chr1_2:15574936-15574955 | None:intergenic | 20.0% |
| !! | TATTTGTAAAGTAACTTCTT+CGG | + | chr1_2:15574992-15575011 | None:intergenic | 20.0% |
| !! | ATTATTGTCATGTTATTCTT+AGG | - | chr1_2:15575403-15575422 | Msa0058910:intron | 20.0% |
| !!! | TCGAAGTTTTTTAAAAAAGT+TGG | + | chr1_2:15575514-15575533 | None:intergenic | 20.0% |
| !!! | ATTTGACTTTATAACTTCAA+GGG | + | chr1_2:15575610-15575629 | None:intergenic | 20.0% |
| !!! | AATTTGACTTTATAACTTCA+AGG | + | chr1_2:15575611-15575630 | None:intergenic | 20.0% |
| !! | CAATAAATAAACTAAAGACA+AGG | - | chr1_2:15575662-15575681 | Msa0058910:intron | 20.0% |
| !!! | TTTTGGTATTTTGAAAAATC+GGG | + | chr1_2:15575712-15575731 | None:intergenic | 20.0% |
| !!! | ATAAATCCACAAAATTTTTG+TGG | - | chr1_2:15576125-15576144 | Msa0058910:five_prime_UTR | 20.0% |
| !! | TATTGAAGCTAAAAAACAAA+TGG | - | chr1_2:15576406-15576425 | Msa0058910:five_prime_UTR | 20.0% |
| !! | ATTATTCATTGAAGTGAATA+AGG | + | chr1_2:15576635-15576654 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTAAGAAATGAAG+AGG | - | chr1_2:15576713-15576732 | Msa0058910:five_prime_UTR | 20.0% |
| !! | ATGAAAGGGATTATGATTTT+TGG | + | chr1_2:15572866-15572885 | None:intergenic | 25.0% |
| !! | TGAGAATTTTGTGACAATTT+TGG | + | chr1_2:15573180-15573199 | None:intergenic | 25.0% |
| !!! | CATGATTATTGTTTTGTTGT+GGG | + | chr1_2:15573226-15573245 | None:intergenic | 25.0% |
| ! | ATTGATGAAGTTGAGAAAAA+TGG | - | chr1_2:15573346-15573365 | Msa0058910:CDS | 25.0% |
| !! | TGAGAAAAATGGATTTAGTT+TGG | - | chr1_2:15573357-15573376 | Msa0058910:CDS | 25.0% |
| ! | GAATTGAAAATTGTATACCT+TGG | + | chr1_2:15573611-15573630 | None:intergenic | 25.0% |
| !! | CCTAAAAAATCAGTTTGTTT+CGG | + | chr1_2:15573977-15573996 | None:intergenic | 25.0% |
| !!! | CGAAACAAACTGATTTTTTA+GGG | - | chr1_2:15573975-15573994 | Msa0058910:intron | 25.0% |
| !!! | GAAACAAACTGATTTTTTAG+GGG | - | chr1_2:15573976-15573995 | Msa0058910:intron | 25.0% |
| ! | GGATTGATAAAGTTTACATA+TGG | + | chr1_2:15574539-15574558 | None:intergenic | 25.0% |
| ! | GTAATTACATAGTACTATGT+AGG | - | chr1_2:15574946-15574965 | Msa0058910:intron | 25.0% |
| ! | TATCATTGTTAAATGATGTC+AGG | - | chr1_2:15575090-15575109 | Msa0058910:intron | 25.0% |
| ! | TGTTTATAGATACGATTTCA+GGG | - | chr1_2:15575255-15575274 | Msa0058910:intron | 25.0% |
| !!! | AGATAATAAGGTTTTGTTAC+TGG | - | chr1_2:15575443-15575462 | Msa0058910:intron | 25.0% |
| ! | TTGGTTATTACTTACTAAGA+AGG | + | chr1_2:15575495-15575514 | None:intergenic | 25.0% |
| !! | GATCATTTTACAATTGTCTT+CGG | - | chr1_2:15575567-15575586 | Msa0058910:intron | 25.0% |
| !! | AAGAACAATCCTTTTATTCT+TGG | + | chr1_2:15576032-15576051 | None:intergenic | 25.0% |
| ! | AAGGAATTGGTAAAATTTGA+TGG | - | chr1_2:15576479-15576498 | Msa0058910:five_prime_UTR | 25.0% |
| ! | TAGATATATGAAACAAATGG+AGG | + | chr1_2:15576805-15576824 | None:intergenic | 25.0% |
| !! | GAAAGGGTATTGAAATGAAA+GGG | + | chr1_2:15572880-15572899 | None:intergenic | 30.0% |
| !! | TGAAAGGGTATTGAAATGAA+AGG | + | chr1_2:15572881-15572900 | None:intergenic | 30.0% |
| ! | GAGTTATGCTATGGATTAAA+GGG | + | chr1_2:15572995-15573014 | None:intergenic | 30.0% |
| !! | TGAGAGCATAACAATTTTTG+CGG | + | chr1_2:15573085-15573104 | None:intergenic | 30.0% |
| !!! | TTGTGACAATTTTGGCTTTA+AGG | + | chr1_2:15573172-15573191 | None:intergenic | 30.0% |
| !! | GCATGATTATTGTTTTGTTG+TGG | + | chr1_2:15573227-15573246 | None:intergenic | 30.0% |
| !! | GAAAAATGGATTTAGTTTGG+TGG | - | chr1_2:15573360-15573379 | Msa0058910:CDS | 30.0% |
| ! | TGCTTTTCATGATCATGTTT+TGG | - | chr1_2:15573465-15573484 | Msa0058910:CDS | 30.0% |
| ! | GCTTTTCATGATCATGTTTT+GGG | - | chr1_2:15573466-15573485 | Msa0058910:CDS | 30.0% |
| AAAATTGTATACCTTGGAGA+TGG | + | chr1_2:15573605-15573624 | None:intergenic | 30.0% | |
| TGAAAGTTCTCTTAAAGGAA+TGG | + | chr1_2:15573645-15573664 | None:intergenic | 30.0% | |
| ! | CAGAAAGACTCAAAAAGTAT+GGG | + | chr1_2:15573819-15573838 | None:intergenic | 30.0% |
| ! | TATTGTGTCTTTTGCTTTGA+CGG | + | chr1_2:15573875-15573894 | None:intergenic | 30.0% |
| GGTGGTAATTATTTCAGAAT+AGG | + | chr1_2:15573956-15573975 | None:intergenic | 30.0% | |
| ! | AAAAAATCAGTTTGTTTCGG+TGG | + | chr1_2:15573974-15573993 | None:intergenic | 30.0% |
| !!! | CCGAAACAAACTGATTTTTT+AGG | - | chr1_2:15573974-15573993 | Msa0058910:intron | 30.0% |
| !!! | TAGAATTTTTTACAGCAGCT+CGG | + | chr1_2:15574022-15574041 | None:intergenic | 30.0% |
| AAAAAATGCTCTGATTGGAA+GGG | + | chr1_2:15574505-15574524 | None:intergenic | 30.0% | |
| ACATGCATTTAATGATCTCT+TGG | + | chr1_2:15574634-15574653 | None:intergenic | 30.0% | |
| TCAATCCATTTCCTTCAAAA+TGG | + | chr1_2:15574726-15574745 | None:intergenic | 30.0% | |
| ! | ATTAATCGACTTCTTGAAGA+CGG | + | chr1_2:15574890-15574909 | None:intergenic | 30.0% |
| ! | TAATTTTTCACCTCTTAGTG+AGG | - | chr1_2:15575032-15575051 | Msa0058910:intron | 30.0% |
| ! | AATTTTTCACCTCTTAGTGA+GGG | - | chr1_2:15575033-15575052 | Msa0058910:intron | 30.0% |
| CATAACATTCAATTTCACTG+AGG | - | chr1_2:15575147-15575166 | Msa0058910:intron | 30.0% | |
| ! | TGCAAAAAAGTATGAGTTTG+CGG | - | chr1_2:15575201-15575220 | Msa0058910:intron | 30.0% |
| CTGTTTATAGATACGATTTC+AGG | - | chr1_2:15575254-15575273 | Msa0058910:intron | 30.0% | |
| ATTTCAAGCCAATGAAATAC+TGG | - | chr1_2:15575321-15575340 | Msa0058910:intron | 30.0% | |
| ! | ATTTTACAATTGTCTTCGGA+GGG | - | chr1_2:15575571-15575590 | Msa0058910:intron | 30.0% |
| ATTGTTACTCCATAAGATCT+CGG | + | chr1_2:15575646-15575665 | None:intergenic | 30.0% | |
| TTCAAGAAATTAACAGCCAA+TGG | - | chr1_2:15575888-15575907 | Msa0058910:intron | 30.0% | |
| ! | ATTTTCCCTGCTTCAAAATT+TGG | - | chr1_2:15576068-15576087 | Msa0058910:intron | 30.0% |
| !!! | AATCTCCAAATTTTGAAGCA+GGG | + | chr1_2:15576076-15576095 | None:intergenic | 30.0% |
| !!! | AAATCTCCAAATTTTGAAGC+AGG | + | chr1_2:15576077-15576096 | None:intergenic | 30.0% |
| ! | TCTATGCCACAAAAATTTTG+TGG | + | chr1_2:15576134-15576153 | None:intergenic | 30.0% |
| GGTTTAATCTAGGAGTAAAT+TGG | + | chr1_2:15576262-15576281 | None:intergenic | 30.0% | |
| TAGATTAAACCAAGATGTGT+GGG | - | chr1_2:15576271-15576290 | Msa0058910:five_prime_UTR | 30.0% | |
| !!! | CAGATTGCATTTTTCAAGTA+TGG | - | chr1_2:15576305-15576324 | Msa0058910:five_prime_UTR | 30.0% |
| ! | CTACAATAATACCCTTTTTG+AGG | + | chr1_2:15576554-15576573 | None:intergenic | 30.0% |
| !! | AAAGGGTATTATTGTAGTCA+TGG | - | chr1_2:15576557-15576576 | Msa0058910:five_prime_UTR | 30.0% |
| TGATAAAGGCAACATTGATA+GGG | + | chr1_2:15576751-15576770 | None:intergenic | 30.0% | |
| ATAGGTAGTAAAAGCCATGT+GGG | + | chr1_2:15572916-15572935 | None:intergenic | 35.0% | |
| AATAGGTAGTAAAAGCCATG+TGG | + | chr1_2:15572917-15572936 | None:intergenic | 35.0% | |
| ! | ACATGGCTTTTACTACCTAT+TGG | - | chr1_2:15572916-15572935 | Msa0058910:three_prime_UTR | 35.0% |
| ! | CTTTTACTACCTATTGGATG+TGG | - | chr1_2:15572922-15572941 | Msa0058910:three_prime_UTR | 35.0% |
| TAAAATCCACCACATCCAAT+AGG | + | chr1_2:15572934-15572953 | None:intergenic | 35.0% | |
| CACATACTTCCACTATTCAT+AGG | - | chr1_2:15572963-15572982 | Msa0058910:three_prime_UTR | 35.0% | |
| ! | ATGCTATGGATTAAAGGGTT+TGG | + | chr1_2:15572990-15573009 | None:intergenic | 35.0% |
| ! | GGAGTTATGCTATGGATTAA+AGG | + | chr1_2:15572996-15573015 | None:intergenic | 35.0% |
| ATTGTTTGGTTGCATTGGAT+GGG | + | chr1_2:15573026-15573045 | None:intergenic | 35.0% | |
| CAACAACAGAAGAACAACTT+CGG | - | chr1_2:15573117-15573136 | Msa0058910:CDS | 35.0% | |
| !!! | AAGGTTGTTTTGAACAACGT+AGG | + | chr1_2:15573153-15573172 | None:intergenic | 35.0% |
| ! | TTGACTGTAACAGTTGATTC+AGG | - | chr1_2:15573304-15573323 | Msa0058910:CDS | 35.0% |
| ATTGTAACACCTTCCCAATA+AGG | + | chr1_2:15573391-15573410 | None:intergenic | 35.0% | |
| !! | TATTGGGAAGGTGTTACAAT+TGG | - | chr1_2:15573391-15573410 | Msa0058910:CDS | 35.0% |
| !! | ATTGGAGGTGTTATTAGTAC+TGG | - | chr1_2:15573409-15573428 | Msa0058910:CDS | 35.0% |
| !! | TTCCTAGTTCTGAATCTGAA+GGG | - | chr1_2:15573503-15573522 | Msa0058910:CDS | 35.0% |
| TGATTCCAACCTCAAAACTT+TGG | + | chr1_2:15573533-15573552 | None:intergenic | 35.0% | |
| ACTTGTGCAGCATTAAACAA+AGG | + | chr1_2:15573562-15573581 | None:intergenic | 35.0% | |
| ! | ACAAGTTTCTCTTGGAGTTT+TGG | - | chr1_2:15573576-15573595 | Msa0058910:CDS | 35.0% |
| ! | CAAGTTTCTCTTGGAGTTTT+GGG | - | chr1_2:15573577-15573596 | Msa0058910:CDS | 35.0% |
| GCAGAAAGACTCAAAAAGTA+TGG | + | chr1_2:15573820-15573839 | None:intergenic | 35.0% | |
| GCAAAAGACACAATATCGTT+TGG | - | chr1_2:15573880-15573899 | Msa0058910:intron | 35.0% | |
| TTCCAATTCGGGTAGAATTA+TGG | + | chr1_2:15573932-15573951 | None:intergenic | 35.0% | |
| TTCAGAATAGGCTTCCAATT+CGG | + | chr1_2:15573944-15573963 | None:intergenic | 35.0% | |
| CTGAGATTCTGAGTTATACT+AGG | + | chr1_2:15574184-15574203 | None:intergenic | 35.0% | |
| GAGACTATACTGTAAAGGAT+TGG | - | chr1_2:15574309-15574328 | Msa0058910:intron | 35.0% | |
| CATTATTATTGCAAGACCTC+TGG | + | chr1_2:15574365-15574384 | None:intergenic | 35.0% | |
| GAGGTCTTGCAATAATAATG+TGG | - | chr1_2:15574365-15574384 | Msa0058910:five_prime_UTR | 35.0% | |
| TATGGTTAGACTCAATTTGG+TGG | + | chr1_2:15574466-15574485 | None:intergenic | 35.0% | |
| GGTTATGGTTAGACTCAATT+TGG | + | chr1_2:15574469-15574488 | None:intergenic | 35.0% | |
| GAAAAAATGCTCTGATTGGA+AGG | + | chr1_2:15574506-15574525 | None:intergenic | 35.0% | |
| !!! | TCCAATCAGAGCATTTTTTC+TGG | - | chr1_2:15574506-15574525 | Msa0058910:five_prime_UTR | 35.0% |
| TCCAGAAAAAATGCTCTGAT+TGG | + | chr1_2:15574510-15574529 | None:intergenic | 35.0% | |
| !!! | AGAGCATTTTTTCTGGAACT+GGG | - | chr1_2:15574513-15574532 | Msa0058910:five_prime_UTR | 35.0% |
| !! | TTTTGGGTGACAATGCAATT+TGG | + | chr1_2:15574565-15574584 | None:intergenic | 35.0% |
| ! | CATTGTCAACACCATTTTGA+AGG | - | chr1_2:15574712-15574731 | Msa0058910:intron | 35.0% |
| !! | CAACACCATTTTGAAGGAAA+TGG | - | chr1_2:15574718-15574737 | Msa0058910:intron | 35.0% |
| !! | AAATGGATTGACTACCTTTG+TGG | - | chr1_2:15574735-15574754 | Msa0058910:intron | 35.0% |
| TGAAGTTATCACTTGAGCAT+AGG | - | chr1_2:15575113-15575132 | Msa0058910:intron | 35.0% | |
| ACATAACTTGGTATCCATCA+AGG | - | chr1_2:15575224-15575243 | Msa0058910:intron | 35.0% | |
| GATGGAGTCTATGATTTCAT+TGG | - | chr1_2:15575298-15575317 | Msa0058910:intron | 35.0% | |
| ! | CATTTTACAATTGTCTTCGG+AGG | - | chr1_2:15575570-15575589 | Msa0058910:intron | 35.0% |
| TGACTTTATAACTTCAAGGG+AGG | + | chr1_2:15575607-15575626 | None:intergenic | 35.0% | |
| TAAATTGCAGATGTGCAGTT+AGG | + | chr1_2:15575742-15575761 | None:intergenic | 35.0% | |
| TTAACAGCATCCACTACATT+GGG | - | chr1_2:15575864-15575883 | Msa0058910:intron | 35.0% | |
| TATCCTGTAATTGGCTATCA+AGG | - | chr1_2:15575942-15575961 | Msa0058910:intron | 35.0% | |
| ! | TTTCCTTGATAGCCAATTAC+AGG | + | chr1_2:15575948-15575967 | None:intergenic | 35.0% |
| CAAGGAAAAATGCAAACTTC+AGG | - | chr1_2:15575960-15575979 | Msa0058910:intron | 35.0% | |
| AATAGACACATCATGTGCAT+GGG | - | chr1_2:15576004-15576023 | Msa0058910:intron | 35.0% | |
| TGTGGCATAGACATCTATAA+TGG | - | chr1_2:15576143-15576162 | Msa0058910:five_prime_UTR | 35.0% | |
| CACACATCTTGGTTTAATCT+AGG | + | chr1_2:15576272-15576291 | None:intergenic | 35.0% | |
| CTAGATTAAACCAAGATGTG+TGG | - | chr1_2:15576270-15576289 | Msa0058910:five_prime_UTR | 35.0% | |
| AAAATGTGTTCTCTGGTGAT+TGG | - | chr1_2:15576435-15576454 | Msa0058910:five_prime_UTR | 35.0% | |
| ! | TGGTCAGATGAGATTTTGTA+TGG | - | chr1_2:15576455-15576474 | Msa0058910:five_prime_UTR | 35.0% |
| ! | GGTCAGATGAGATTTTGTAT+GGG | - | chr1_2:15576456-15576475 | Msa0058910:five_prime_UTR | 35.0% |
| ! | AGATGAGATTTTGTATGGGA+AGG | - | chr1_2:15576460-15576479 | Msa0058910:five_prime_UTR | 35.0% |
| ! | GATTTTGTATGGGAAGGAAT+TGG | - | chr1_2:15576466-15576485 | Msa0058910:five_prime_UTR | 35.0% |
| ! | AAAATTTGATGGCTGTGCTT+TGG | - | chr1_2:15576490-15576509 | Msa0058910:five_prime_UTR | 35.0% |
| AGACATTGTAGTCCTCAAAA+AGG | - | chr1_2:15576539-15576558 | Msa0058910:five_prime_UTR | 35.0% | |
| GACATTGTAGTCCTCAAAAA+GGG | - | chr1_2:15576540-15576559 | Msa0058910:five_prime_UTR | 35.0% | |
| ACAAGGAAGCTAAAGTTTGT+AGG | - | chr1_2:15576588-15576607 | Msa0058910:five_prime_UTR | 35.0% | |
| GTGATAAAGGCAACATTGAT+AGG | + | chr1_2:15576752-15576771 | None:intergenic | 35.0% | |
| ! | ACGTGATAAAGGTGTGATAA+AGG | + | chr1_2:15576765-15576784 | None:intergenic | 35.0% |
| TTACTACCTATTGGATGTGG+TGG | - | chr1_2:15572925-15572944 | Msa0058910:three_prime_UTR | 40.0% | |
| GAGATTGTGGAGTTATGCTA+TGG | + | chr1_2:15573004-15573023 | None:intergenic | 40.0% | |
| GATTGTTTGGTTGCATTGGA+TGG | + | chr1_2:15573027-15573046 | None:intergenic | 40.0% | |
| TGCAGATTGTTTGGTTGCAT+TGG | + | chr1_2:15573031-15573050 | None:intergenic | 40.0% | |
| ! | TTTGAAGGGTGCAGATTGTT+TGG | + | chr1_2:15573040-15573059 | None:intergenic | 40.0% |
| TGCACCCTTCAAAACTCATA+CGG | - | chr1_2:15573047-15573066 | Msa0058910:CDS | 40.0% | |
| !!! | TGTGCCGTATGAGTTTTGAA+GGG | + | chr1_2:15573054-15573073 | None:intergenic | 40.0% |
| !! | ATGTGCCGTATGAGTTTTGA+AGG | + | chr1_2:15573055-15573074 | None:intergenic | 40.0% |
| TTCAAAACTCATACGGCACA+TGG | - | chr1_2:15573054-15573073 | Msa0058910:CDS | 40.0% | |
| CGAAGTTGTTCTTCTGTTGT+TGG | + | chr1_2:15573119-15573138 | None:intergenic | 40.0% | |
| ! | GTTGTGGGCATGATAGTTTT+GGG | + | chr1_2:15573211-15573230 | None:intergenic | 40.0% |
| ! | TGTTGTGGGCATGATAGTTT+TGG | + | chr1_2:15573212-15573231 | None:intergenic | 40.0% |
| !! | GTTATTAGTACTGGTGCACA+TGG | - | chr1_2:15573418-15573437 | Msa0058910:CDS | 40.0% |
| !! | GTTCCTAGTTCTGAATCTGA+AGG | - | chr1_2:15573502-15573521 | Msa0058910:CDS | 40.0% |
| TACCCTTCAGATTCAGAACT+AGG | + | chr1_2:15573508-15573527 | None:intergenic | 40.0% | |
| !! | AAGGGTATGCCAAAGTTTTG+AGG | - | chr1_2:15573521-15573540 | Msa0058910:CDS | 40.0% |
| !!! | GTATGCCAAAGTTTTGAGGT+TGG | - | chr1_2:15573525-15573544 | Msa0058910:CDS | 40.0% |
| AATGCTGCACAAGTTTCTCT+TGG | - | chr1_2:15573568-15573587 | Msa0058910:CDS | 40.0% | |
| TATGGAGGTGAGGAGTTAAT+CGG | + | chr1_2:15573914-15573933 | None:intergenic | 40.0% | |
| CAATTCGGGTAGAATTATGG+AGG | + | chr1_2:15573929-15573948 | None:intergenic | 40.0% | |
| CTCCATAATTCTACCCGAAT+TGG | - | chr1_2:15573927-15573946 | Msa0058910:intron | 40.0% | |
| TCAGAATAGGCTTCCAATTC+GGG | + | chr1_2:15573943-15573962 | None:intergenic | 40.0% | |
| !! | GTTATACTAGGTGTTGACAG+AGG | + | chr1_2:15574172-15574191 | None:intergenic | 40.0% |
| ! | AATTTTGTCCAGTGAGGAAG+AGG | + | chr1_2:15574214-15574233 | None:intergenic | 40.0% |
| ATGCAGAAATTTACTGCAGC+TGG | + | chr1_2:15574270-15574289 | None:intergenic | 40.0% | |
| TACAGTATAGTCTCCGACAA+AGG | + | chr1_2:15574303-15574322 | None:intergenic | 40.0% | |
| TGTCGGAGACTATACTGTAA+AGG | - | chr1_2:15574304-15574323 | Msa0058910:intron | 40.0% | |
| TTATTGCAAGACCTCTGGTT+TGG | + | chr1_2:15574360-15574379 | None:intergenic | 40.0% | |
| AAAGCAGTCAGAAGAGTAGT+TGG | + | chr1_2:15574397-15574416 | None:intergenic | 40.0% | |
| CGTCGGAGGTAGAATAAAAT+TGG | + | chr1_2:15574426-15574445 | None:intergenic | 40.0% | |
| GGATGAATACGGTAAGGTTA+TGG | + | chr1_2:15574484-15574503 | None:intergenic | 40.0% | |
| CTGATTGGAAGGGATGAATA+CGG | + | chr1_2:15574495-15574514 | None:intergenic | 40.0% | |
| !!! | CAGAGCATTTTTTCTGGAAC+TGG | - | chr1_2:15574512-15574531 | Msa0058910:five_prime_UTR | 40.0% |
| CCGAAGAATACACTAAACTG+CGG | + | chr1_2:15574772-15574791 | None:intergenic | 40.0% | |
| CCGCAGTTTAGTGTATTCTT+CGG | - | chr1_2:15574769-15574788 | Msa0058910:intron | 40.0% | |
| AACTTCTTCGGTACGTGTAA+AGG | + | chr1_2:15574980-15574999 | None:intergenic | 40.0% | |
| ATGAGTTTGCGGACATAACT+TGG | - | chr1_2:15575212-15575231 | Msa0058910:intron | 40.0% | |
| CTGAGAGACCAGTATTTCAT+TGG | + | chr1_2:15575332-15575351 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTGTTACTGGCTTG+TGG | - | chr1_2:15575450-15575469 | Msa0058910:intron | 40.0% |
| ! | GAAGGTACAATATGACAGTG+AGG | + | chr1_2:15575477-15575496 | None:intergenic | 40.0% |
| ! | TGCAGTTAGGTCGCAATTTT+TGG | + | chr1_2:15575729-15575748 | None:intergenic | 40.0% |
| GAAAACACAGGAAACACGAA+CGG | - | chr1_2:15575834-15575853 | Msa0058910:intron | 40.0% | |
| AAAACACAGGAAACACGAAC+GGG | - | chr1_2:15575835-15575854 | Msa0058910:intron | 40.0% | |
| CTTAACAGCATCCACTACAT+TGG | - | chr1_2:15575863-15575882 | Msa0058910:intron | 40.0% | |
| TAACAGCATCCACTACATTG+GGG | - | chr1_2:15575865-15575884 | Msa0058910:intron | 40.0% | |
| TTTCTTGAACCCCAATGTAG+TGG | + | chr1_2:15575877-15575896 | None:intergenic | 40.0% | |
| TTCACCAGCTATCCTGTAAT+TGG | - | chr1_2:15575933-15575952 | Msa0058910:intron | 40.0% | |
| ATAGCCAATTACAGGATAGC+TGG | + | chr1_2:15575940-15575959 | None:intergenic | 40.0% | |
| GAATAGACACATCATGTGCA+TGG | - | chr1_2:15576003-15576022 | Msa0058910:intron | 40.0% | |
| GCATGGGATCCAAGAATAAA+AGG | - | chr1_2:15576020-15576039 | Msa0058910:intron | 40.0% | |
| ! | AAAGCCTCAGAAGCATATCT+AGG | - | chr1_2:15576185-15576204 | Msa0058910:five_prime_UTR | 40.0% |
| TTGTCCTAGATATGCTTCTG+AGG | + | chr1_2:15576192-15576211 | None:intergenic | 40.0% | |
| ! | TCTAGGACAATCAGAAGACT+CGG | - | chr1_2:15576202-15576221 | Msa0058910:five_prime_UTR | 40.0% |
| ATTAAACCAAGATGTGTGGG+AGG | - | chr1_2:15576274-15576293 | Msa0058910:five_prime_UTR | 40.0% | |
| TTCCTATTCTTAGCCCAATG+TGG | + | chr1_2:15576338-15576357 | None:intergenic | 40.0% | |
| GATCCACAAAATGTGTTCTC+TGG | - | chr1_2:15576428-15576447 | Msa0058910:five_prime_UTR | 40.0% | |
| ! | TCACCAGAGAACACATTTTG+TGG | + | chr1_2:15576434-15576453 | None:intergenic | 40.0% |
| TAGTCATGGACTTGTCTACA+AGG | - | chr1_2:15576571-15576590 | Msa0058910:five_prime_UTR | 40.0% | |
| AAAGGCAACATTGATAGGGA+CGG | + | chr1_2:15576747-15576766 | None:intergenic | 40.0% | |
| AAAGCGAACACACGTGATAA+AGG | + | chr1_2:15576776-15576795 | None:intergenic | 40.0% | |
| GGGTGATGATTGTGGTGAAA+GGG | + | chr1_2:15572896-15572915 | None:intergenic | 45.0% | |
| TGGGTGATGATTGTGGTGAA+AGG | + | chr1_2:15572897-15572916 | None:intergenic | 45.0% | |
| ! | GGGTTTGGTCCTATGAATAG+TGG | + | chr1_2:15572975-15572994 | None:intergenic | 45.0% |
| TTGCATTGGATGGGAGATTG+TGG | + | chr1_2:15573017-15573036 | None:intergenic | 45.0% | |
| ! | TTTGGTGGCTGCACCTTATT+GGG | - | chr1_2:15573375-15573394 | Msa0058910:CDS | 45.0% |
| !! | TGGGAAGGTGTTACAATTGG+AGG | - | chr1_2:15573394-15573413 | Msa0058910:CDS | 45.0% |
| !! | ATTAGTACTGGTGCACATGG+TGG | - | chr1_2:15573421-15573440 | Msa0058910:CDS | 45.0% |
| AGATGTGGTCAAGTAGCTTC+TGG | + | chr1_2:15574127-15574146 | None:intergenic | 45.0% | |
| ! | GTGCAGAATTTTGTCCAGTG+AGG | + | chr1_2:15574220-15574239 | None:intergenic | 45.0% |
| GTCAGAAGAGTAGTTGGAGA+CGG | + | chr1_2:15574391-15574410 | None:intergenic | 45.0% | |
| TGGAAGGGATGAATACGGTA+AGG | + | chr1_2:15574490-15574509 | None:intergenic | 45.0% | |
| GGTGACAATGCAATTTGGTC+AGG | + | chr1_2:15574560-15574579 | None:intergenic | 45.0% | |
| TGGATTGACTACCTTTGTGG+CGG | - | chr1_2:15574738-15574757 | Msa0058910:intron | 45.0% | |
| TGCTAACATCCCTCACTAAG+AGG | + | chr1_2:15575045-15575064 | None:intergenic | 45.0% | |
| TAAACAGCTGTGTGCCTTGA+TGG | + | chr1_2:15575241-15575260 | None:intergenic | 45.0% | |
| ACTACTGAGCCGAGATCTTA+TGG | - | chr1_2:15575634-15575653 | Msa0058910:intron | 45.0% | |
| ACTTCAACGTTGTCATGCAG+AGG | - | chr1_2:15575803-15575822 | Msa0058910:intron | 45.0% | |
| TTGTCATGCAGAGGAATTGC+TGG | - | chr1_2:15575812-15575831 | Msa0058910:intron | 45.0% | |
| GAGGAATTGCTGGAAAACAC+AGG | - | chr1_2:15575822-15575841 | Msa0058910:intron | 45.0% | |
| AAACACAGGAAACACGAACG+GGG | - | chr1_2:15575836-15575855 | Msa0058910:intron | 45.0% | |
| GCCAATGGTTTGAAGAACAG+TGG | - | chr1_2:15575903-15575922 | Msa0058910:intron | 45.0% | |
| GCCACTGTTCTTCAAACCAT+TGG | + | chr1_2:15575907-15575926 | None:intergenic | 45.0% | |
| CAGGATAGCTGGTGAAGATT+AGG | + | chr1_2:15575929-15575948 | None:intergenic | 45.0% | |
| ! | AGTATGGTGCTAAGCCACAT+TGG | - | chr1_2:15576321-15576340 | Msa0058910:five_prime_UTR | 45.0% |
| ! | GTATGGTGCTAAGCCACATT+GGG | - | chr1_2:15576322-15576341 | Msa0058910:five_prime_UTR | 45.0% |
| AGCCACATTGGGCTAAGAAT+AGG | - | chr1_2:15576333-15576352 | Msa0058910:five_prime_UTR | 45.0% | |
| ! | TTTGATGGCTGTGCTTTGGA+AGG | - | chr1_2:15576494-15576513 | Msa0058910:five_prime_UTR | 45.0% |
| !!! | TTTAAATTTTATAAAGTTTT+GGG | + | chr1_2:15574581-15574600 | None:intergenic | 5.0% |
| !!! | TTTTAAATTTTATAAAGTTT+TGG | + | chr1_2:15574582-15574601 | None:intergenic | 5.0% |
| CACCACAATCATCACCCACA+TGG | - | chr1_2:15572899-15572918 | Msa0058910:three_prime_UTR | 50.0% | |
| AGCCATGTGGGTGATGATTG+TGG | + | chr1_2:15572904-15572923 | None:intergenic | 50.0% | |
| ! | GTTTGGTGGCTGCACCTTAT+TGG | - | chr1_2:15573374-15573393 | Msa0058910:CDS | 50.0% |
| TGCACATGGTGGTTCTTGGT+GGG | - | chr1_2:15573432-15573451 | Msa0058910:CDS | 50.0% | |
| !!! | AGTTTTGGGTGCCATCTCCA+AGG | - | chr1_2:15573591-15573610 | Msa0058910:CDS | 50.0% |
| CGGGTAGAATTATGGAGGTG+AGG | + | chr1_2:15573924-15573943 | None:intergenic | 50.0% | |
| GGACGAAGGCAAAGGATTCT+CGG | + | chr1_2:15574106-15574125 | None:intergenic | 50.0% | |
| TAGCTTCTGGACGAAGGCAA+AGG | + | chr1_2:15574114-15574133 | None:intergenic | 50.0% | |
| GTCAAGTAGCTTCTGGACGA+AGG | + | chr1_2:15574120-15574139 | None:intergenic | 50.0% | |
| AGAGGTTCAGTTGCAGGAAG+GGG | + | chr1_2:15574154-15574173 | None:intergenic | 50.0% | |
| CAGAGGTTCAGTTGCAGGAA+GGG | + | chr1_2:15574155-15574174 | None:intergenic | 50.0% | |
| ACAGAGGTTCAGTTGCAGGA+AGG | + | chr1_2:15574156-15574175 | None:intergenic | 50.0% | |
| GTTGACAGAGGTTCAGTTGC+AGG | + | chr1_2:15574160-15574179 | None:intergenic | 50.0% | |
| GATTCACTCCTCTTCCTCAC+TGG | - | chr1_2:15574203-15574222 | Msa0058910:intron | 50.0% | |
| CAGCTGGTACACAGCAGAAA+TGG | + | chr1_2:15574254-15574273 | None:intergenic | 50.0% | |
| CATGAGTGATGCGCCTTTGT+CGG | - | chr1_2:15574287-15574306 | Msa0058910:intron | 50.0% | |
| ! | TCGGTTGCTTTCCAAACCAG+AGG | - | chr1_2:15574346-15574365 | Msa0058910:five_prime_UTR | 50.0% |
| !! | CAATTTGGTGGTGCTCCGAT+TGG | + | chr1_2:15574454-15574473 | None:intergenic | 50.0% |
| ATCATAGACTCCATCACCCG+AGG | + | chr1_2:15575293-15575312 | None:intergenic | 50.0% | |
| TCTCAGTCAGTTAGAGCAGC+AGG | - | chr1_2:15575346-15575365 | Msa0058910:intron | 50.0% | |
| CCAATTCCTCCCACACATCT+TGG | + | chr1_2:15576283-15576302 | None:intergenic | 50.0% | |
| CCAAGATGTGTGGGAGGAAT+TGG | - | chr1_2:15576280-15576299 | Msa0058910:five_prime_UTR | 50.0% | |
| GTGGCTGCACCTTATTGGGA+AGG | - | chr1_2:15573379-15573398 | Msa0058910:CDS | 55.0% | |
| CTGGTGCACATGGTGGTTCT+TGG | - | chr1_2:15573428-15573447 | Msa0058910:CDS | 55.0% | |
| GTGCACATGGTGGTTCTTGG+TGG | - | chr1_2:15573431-15573450 | Msa0058910:CDS | 55.0% | |
| GCACATGGTGGTTCTTGGTG+GGG | - | chr1_2:15573433-15573452 | Msa0058910:CDS | 55.0% | |
| TACAGCAGCTCGGCGTTTGT+GGG | + | chr1_2:15574012-15574031 | None:intergenic | 55.0% | |
| TTACAGCAGCTCGGCGTTTG+TGG | + | chr1_2:15574013-15574032 | None:intergenic | 55.0% | |
| !! | AGCAGAAATGGCGCTGGTTC+TGG | + | chr1_2:15574242-15574261 | None:intergenic | 55.0% |
| GTACACAGCAGAAATGGCGC+TGG | + | chr1_2:15574248-15574267 | None:intergenic | 55.0% | |
| ! | TGGTGGTGCTCCGATTGGAA+GGG | + | chr1_2:15574449-15574468 | None:intergenic | 55.0% |
| !! | TTGGTGGTGCTCCGATTGGA+AGG | + | chr1_2:15574450-15574469 | None:intergenic | 55.0% |
| CGGTGACTTTACCGCCACAA+AGG | + | chr1_2:15574752-15574771 | None:intergenic | 55.0% | |
| CAGGGTTCCCTTAGATGCCT+CGG | - | chr1_2:15575273-15575292 | Msa0058910:intron | 55.0% | |
| AGGGTTCCCTTAGATGCCTC+GGG | - | chr1_2:15575274-15575293 | Msa0058910:intron | 55.0% | |
| ! | CCATCACCCGAGGCATCTAA+GGG | + | chr1_2:15575283-15575302 | None:intergenic | 55.0% |
| ! | TCCATCACCCGAGGCATCTA+AGG | + | chr1_2:15575284-15575303 | None:intergenic | 55.0% |
| GGTGGTTCTTGGTGGGGCAA+AGG | - | chr1_2:15573439-15573458 | Msa0058910:CDS | 60.0% | |
| GGTTCTTGGTGGGGCAAAGG+TGG | - | chr1_2:15573442-15573461 | Msa0058910:CDS | 60.0% | |
| GCAGGAAGGGGTGACAGATG+TGG | + | chr1_2:15574142-15574161 | None:intergenic | 60.0% | |
| ACCTCCGACGCCCTTCCAAT+CGG | - | chr1_2:15574436-15574455 | Msa0058910:five_prime_UTR | 60.0% | |
| ! | TGCTCCGATTGGAAGGGCGT+CGG | + | chr1_2:15574443-15574462 | None:intergenic | 60.0% |
| CCCTTAGATGCCTCGGGTGA+TGG | - | chr1_2:15575280-15575299 | Msa0058910:intron | 60.0% | |
| !! | TCCGATTGGAAGGGCGTCGG+AGG | + | chr1_2:15574440-15574459 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15572857 | 15576824 | 15572857 | ID=Msa0058910;Name=Msa0058910 |
| chr1_2 | mRNA | 15572857 | 15576824 | 15572857 | ID=Msa0058910-mRNA-1;Parent=Msa0058910;Name=Msa0058910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1158|1|1|1|1|1|3|175|226 |
| chr1_2 | exon | 15572857 | 15573858 | 15572857 | ID=Msa0058910-mRNA-1:exon:6265;Parent=Msa0058910-mRNA-1 |
| chr1_2 | exon | 15574314 | 15574569 | 15574314 | ID=Msa0058910-mRNA-1:exon:6264;Parent=Msa0058910-mRNA-1 |
| chr1_2 | exon | 15576069 | 15576824 | 15576069 | ID=Msa0058910-mRNA-1:exon:6263;Parent=Msa0058910-mRNA-1 |
| chr1_2 | five_prime_UTR | 15576069 | 15576824 | 15576069 | ID=Msa0058910-mRNA-1:five_prime_utr;Parent=Msa0058910-mRNA-1 |
| chr1_2 | five_prime_UTR | 15574314 | 15574569 | 15574314 | ID=Msa0058910-mRNA-1:five_prime_utr;Parent=Msa0058910-mRNA-1 |
| chr1_2 | five_prime_UTR | 15573713 | 15573858 | 15573713 | ID=Msa0058910-mRNA-1:five_prime_utr;Parent=Msa0058910-mRNA-1 |
| chr1_2 | CDS | 15573032 | 15573712 | 15573032 | ID=Msa0058910-mRNA-1:cds;Parent=Msa0058910-mRNA-1 |
| chr1_2 | three_prime_UTR | 15572857 | 15573031 | 15572857 | ID=Msa0058910-mRNA-1:three_prime_utr;Parent=Msa0058910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
