AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1104130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1104130 MtrunA17_Chr7g0234761 94.915 531 9 3 1 527 1 517 0.0 1021
Msa1104130 MtrunA17_Chr8g0339091 63.867 512 124 15 38 524 15 490 0.0 558
Msa1104130 MtrunA17_Chr1g0152131 36.788 386 171 11 105 454 74 422 7.28e-54 187
Msa1104130 MtrunA17_Chr8g0365941 38.310 355 163 13 142 466 125 453 1.52e-51 182
Msa1104130 MtrunA17_Chr4g0035101 57.647 170 57 4 272 434 85 246 1.51e-50 176
Msa1104130 MtrunA17_Chr3g0144641 64.748 139 45 2 280 414 140 278 8.46e-50 176
Msa1104130 MtrunA17_Chr8g0363921 51.232 203 83 4 243 438 76 269 8.19e-49 170
Msa1104130 MtrunA17_Chr5g0415291 56.667 150 48 2 266 415 68 200 3.34e-43 153
Msa1104130 MtrunA17_Chr8g0385911 69.643 112 31 2 319 427 137 248 4.86e-43 155
Msa1104130 MtrunA17_Chr7g0258161 58.333 132 44 3 324 446 170 299 1.94e-41 152
Msa1104130 MtrunA17_Chr3g0131771 88.750 80 9 0 319 398 139 218 7.02e-41 150
Msa1104130 MtrunA17_Chr1g0174161 61.111 108 37 2 324 426 157 264 1.79e-38 143
Msa1104130 MtrunA17_Chr6g0484271 60.909 110 43 0 298 407 126 235 7.44e-37 137
Msa1104130 MtrunA17_Chr4g0074161 55.660 106 38 4 327 426 206 308 2.03e-22 99.8
Msa1104130 MtrunA17_Chr1g0190731 64.000 75 26 1 318 392 184 257 5.62e-22 97.4
Msa1104130 MtrunA17_Chr4g0032951 58.462 65 27 0 327 391 355 419 2.33e-15 78.2
Msa1104130 MtrunA17_Chr1g0184841 60.000 75 29 1 318 392 111 184 2.96e-15 76.3
Msa1104130 MtrunA17_Chr4g0014771 55.385 65 29 0 327 391 118 182 3.95e-15 73.9
Msa1104130 MtrunA17_Chr2g0329041 53.846 65 30 0 325 389 330 394 6.27e-15 77.0
Msa1104130 MtrunA17_Chr1g0182791 52.174 69 32 1 329 397 319 386 7.37e-15 77.4
Msa1104130 MtrunA17_Chr1g0174271 52.174 69 33 0 327 395 298 366 1.98e-14 75.1
Msa1104130 MtrunA17_Chr7g0258181 50.725 69 34 0 327 395 243 311 2.12e-14 74.3
Msa1104130 MtrunA17_Chr1g0193321 51.562 64 30 1 329 392 464 526 3.30e-14 75.5
Msa1104130 MtrunA17_Chr3g0087771 50.769 65 32 0 327 391 322 386 5.11e-13 70.9
Msa1104130 MtrunA17_Chr1g0153241 39.560 91 47 2 303 393 68 150 1.26e-12 68.2
Msa1104130 MtrunA17_Chr8g0351881 47.692 65 34 0 327 391 316 380 1.78e-12 69.3
Msa1104130 MtrunA17_Chr1g0152651 41.000 100 39 2 292 391 258 337 2.48e-12 68.6
Msa1104130 MtrunA17_Chr5g0393721 51.562 64 30 1 328 391 225 287 7.84e-12 66.6
Msa1104130 MtrunA17_Chr7g0262691 36.190 105 65 2 288 392 214 316 9.73e-12 67.4
Msa1104130 MtrunA17_Chr3g0134741 53.125 64 29 1 328 391 230 292 1.49e-11 65.9
Msa1104130 MtrunA17_Chr3g0095391 50.000 64 31 1 329 392 311 373 1.66e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1104130 AT3G07340.1 45.591 533 199 16 1 526 1 449 5.65e-125 374
Msa1104130 AT3G07340.2 45.233 493 185 13 1 486 1 415 4.53e-114 345
Msa1104130 AT5G48560.1 47.135 541 201 23 1 509 1 488 5.39e-108 332
Msa1104130 AT5G48560.2 47.104 518 190 22 1 486 1 466 5.51e-101 312
Msa1104130 AT3G23690.1 47.547 265 107 6 242 505 113 346 2.30e-60 204
Msa1104130 AT1G68920.3 43.284 335 142 13 122 426 97 413 1.14e-57 199
Msa1104130 AT1G68920.1 41.493 335 149 10 122 426 97 414 1.61e-57 199
Msa1104130 AT1G68920.4 41.493 335 149 10 122 426 97 414 1.61e-57 199
Msa1104130 AT1G68920.2 41.493 335 149 10 122 426 97 414 1.61e-57 199
Msa1104130 AT1G26260.4 43.345 293 121 10 137 426 68 318 1.37e-52 183
Msa1104130 AT1G26260.1 43.345 293 121 10 137 426 68 318 1.37e-52 183
Msa1104130 AT1G26260.6 43.345 293 121 10 137 426 68 318 1.37e-52 183
Msa1104130 AT1G26260.2 43.345 293 121 10 137 426 68 318 1.37e-52 183
Msa1104130 AT1G26260.5 42.756 283 109 10 151 426 60 296 1.11e-49 175
Msa1104130 AT1G59640.1 53.073 179 60 3 268 446 79 233 7.57e-49 170
Msa1104130 AT1G10120.2 68.908 119 36 1 301 418 179 297 9.68e-49 172
Msa1104130 AT1G10120.1 68.908 119 36 1 301 418 179 297 9.68e-49 172
Msa1104130 AT1G26260.3 59.615 156 51 4 272 426 123 267 2.77e-48 171
Msa1104130 AT1G59640.2 59.589 146 57 1 268 413 79 222 1.07e-46 166
Msa1104130 AT2G18300.1 53.939 165 63 3 277 428 129 293 5.84e-46 164
Msa1104130 AT4G34530.1 55.488 164 51 4 268 413 99 258 6.48e-46 164
Msa1104130 AT2G18300.2 54.762 168 59 5 277 428 129 295 1.13e-45 163
Msa1104130 AT2G18300.3 54.762 168 59 5 277 428 129 295 2.33e-45 163
Msa1104130 AT5G50915.3 50.476 210 79 10 242 437 62 260 4.87e-44 157
Msa1104130 AT5G50915.4 50.476 210 79 10 242 437 62 260 4.87e-44 157
Msa1104130 AT5G50915.1 49.065 214 84 9 242 441 62 264 8.82e-44 157
Msa1104130 AT5G50915.2 49.065 214 84 9 242 441 62 264 8.82e-44 157
Msa1104130 AT4G36540.2 58.571 140 54 2 275 414 93 228 4.30e-43 155
Msa1104130 AT4G36540.1 59.155 142 53 3 275 416 93 229 7.11e-43 155
Msa1104130 AT5G62610.2 76.087 92 17 1 308 399 139 225 5.52e-42 152
Msa1104130 AT5G62610.1 76.087 92 17 1 308 399 139 225 5.52e-42 152
Msa1104130 AT2G42300.4 68.889 90 28 0 324 413 182 271 9.46e-40 145
Msa1104130 AT3G57800.2 56.489 131 42 3 324 443 201 327 1.48e-39 148
Msa1104130 AT2G42300.1 60.833 120 37 3 324 443 182 291 3.33e-39 145
Msa1104130 AT1G25330.1 59.292 113 37 1 306 418 92 195 1.73e-36 135
Msa1104130 AT1G18400.2 72.289 83 23 0 325 407 143 225 1.89e-34 130
Msa1104130 AT1G18400.1 72.289 83 23 0 325 407 143 225 3.23e-34 130
Msa1104130 AT1G73830.2 58.182 110 46 0 298 407 118 227 3.23e-34 130
Msa1104130 AT1G73830.1 58.182 110 46 0 298 407 118 227 3.38e-34 130
Msa1104130 AT3G57800.1 41.573 178 42 4 324 443 201 374 5.11e-31 125
Msa1104130 AT2G24260.2 66.667 72 23 1 321 392 29 99 1.15e-23 100
Msa1104130 AT2G24260.1 66.667 72 23 1 321 392 132 202 1.20e-22 99.8
Msa1104130 AT4G30980.1 52.941 102 37 3 291 392 104 194 1.35e-22 99.0
Msa1104130 AT5G58010.1 54.545 99 44 1 294 392 66 163 1.42e-22 98.6
Msa1104130 AT4G30980.2 52.941 102 37 3 291 392 152 242 2.51e-22 99.0
Msa1104130 AT2G42300.5 83.721 43 7 0 324 366 182 224 1.49e-18 85.1
Msa1104130 AT2G42300.3 83.721 43 7 0 324 366 182 224 1.49e-18 85.1
Msa1104130 AT2G42300.2 83.721 43 7 0 324 366 182 224 1.69e-18 85.1
Msa1104130 AT4G28790.1 34.932 146 76 4 248 392 208 335 6.51e-15 77.4
Msa1104130 AT2G20180.7 53.968 63 28 1 330 392 210 271 1.85e-14 75.9
Msa1104130 AT2G20180.1 53.968 63 28 1 330 392 210 271 1.85e-14 75.9
Msa1104130 AT2G20180.5 53.968 63 28 1 330 392 210 271 1.85e-14 75.9
Msa1104130 AT4G09180.1 52.239 67 32 0 325 391 182 248 2.04e-14 73.9
Msa1104130 AT2G20180.4 53.968 63 28 1 330 392 281 342 2.41e-14 75.9
Msa1104130 AT2G20180.6 53.968 63 28 1 330 392 281 342 2.41e-14 75.9
Msa1104130 AT2G20180.2 53.968 63 28 1 330 392 281 342 2.41e-14 75.9
Msa1104130 AT2G20180.3 53.968 63 28 1 330 392 281 342 2.41e-14 75.9
Msa1104130 AT4G02590.3 57.500 80 29 2 317 392 69 147 3.18e-14 73.2
Msa1104130 AT2G42280.1 53.125 64 30 0 327 390 279 342 3.87e-14 74.3
Msa1104130 AT4G02590.2 57.500 80 29 2 317 392 132 210 4.72e-14 73.6
Msa1104130 AT4G02590.1 57.500 80 29 2 317 392 132 210 4.72e-14 73.6
Msa1104130 AT1G51140.1 56.250 64 28 0 327 390 304 367 4.96e-14 74.3
Msa1104130 AT2G42280.3 54.545 66 28 1 327 390 279 344 6.66e-14 73.6
Msa1104130 AT1G09530.3 51.562 64 30 1 329 392 339 401 6.79e-14 74.7
Msa1104130 AT1G09530.2 51.562 64 30 1 329 392 339 401 6.79e-14 74.7
Msa1104130 AT1G09530.5 51.562 64 30 1 329 392 339 401 6.79e-14 74.7
Msa1104130 AT1G09530.1 51.562 64 30 1 329 392 339 401 6.79e-14 74.7
Msa1104130 AT1G09530.4 51.562 64 30 1 329 392 339 401 6.79e-14 74.7
Msa1104130 AT1G09530.6 51.562 64 30 1 329 392 339 401 6.79e-14 74.7
Msa1104130 AT4G28790.2 33.793 145 77 4 251 394 211 337 1.08e-13 72.8
Msa1104130 AT1G35460.1 51.515 66 32 0 326 391 180 245 1.14e-13 71.6
Msa1104130 AT4G28815.2 56.897 58 24 1 330 387 71 127 1.48e-13 70.9
Msa1104130 AT1G03040.2 63.636 66 23 1 327 392 139 203 1.59e-13 71.6
Msa1104130 AT1G03040.1 63.636 66 23 1 327 392 144 208 1.76e-13 71.6
Msa1104130 AT4G28800.1 35.938 128 65 3 264 391 202 312 2.57e-13 72.4
Msa1104130 AT1G03040.3 63.636 66 23 1 327 392 144 208 3.54e-13 71.2
Msa1104130 AT4G28815.1 56.897 58 24 1 330 387 147 203 5.39e-13 70.5
Msa1104130 AT2G20180.8 53.333 60 27 1 330 389 281 339 6.10e-13 70.5
Msa1104130 AT4G28800.2 35.433 127 65 3 264 390 214 323 8.29e-13 70.9
Msa1104130 AT4G33880.1 43.182 88 49 1 304 391 243 329 9.87e-13 70.1
Msa1104130 AT2G14760.1 42.857 91 51 1 301 391 211 300 1.78e-12 68.9
Msa1104130 AT2G46970.1 34.211 114 57 3 284 392 187 287 3.18e-12 68.9
Msa1104130 AT2G46970.3 34.211 114 57 3 284 392 165 265 3.77e-12 68.6
Msa1104130 AT2G46970.2 34.211 114 57 3 284 392 156 256 4.02e-12 68.6
Msa1104130 AT1G27740.1 43.617 94 44 2 298 391 146 230 1.24e-11 65.5
Msa1104130 AT2G43140.1 48.611 72 35 1 321 390 126 197 1.36e-11 64.7
Msa1104130 AT4G00050.2 50.769 65 31 1 327 391 105 168 3.48e-11 64.7
Msa1104130 AT4G00050.1 50.769 65 31 1 327 391 207 270 6.86e-11 64.7
Msa1104130 AT4G00050.3 50.769 65 31 1 327 391 207 270 8.04e-11 64.3
Msa1104130 AT4G36930.1 50.820 61 29 1 333 393 197 256 8.82e-11 64.3

Find 135 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCCAGATTCTTATTATTA+TGG 0.191721 7_3:+40889790 Msa1104130:three_prime_UTR
AGAGAATTGATTGGTAAATT+AGG 0.220575 7_3:+40886776 Msa1104130:CDS
TTCCATTAAGGAAAAGATTA+AGG 0.223192 7_3:-40886504 None:intergenic
GCAGTTCCTATCTATGAAAT+TGG 0.223353 7_3:+40888377 Msa1104130:intron
TCAAAGATCTACTCCATTAT+TGG 0.223521 7_3:+40887051 Msa1104130:CDS
TCCTCAGCACCATCCTATTA+TGG 0.234641 7_3:+40888610 Msa1104130:CDS
CTATTCACTGTAAAATCTTT+AGG 0.253555 7_3:+40889746 Msa1104130:three_prime_UTR
TCTACTCCATTATTGGAAAA+TGG 0.261666 7_3:+40887058 Msa1104130:CDS
ACATCAACAAGAAATTTAAT+TGG 0.262134 7_3:+40889543 Msa1104130:three_prime_UTR
GTTTCAATCAAATAATTCTT+TGG 0.281320 7_3:+40888564 Msa1104130:CDS
GGACTCAACCTTGTTCTTGC+TGG 0.285071 7_3:+40886180 None:intergenic
GAGGAATCTAATGGGAATAT+TGG 0.295383 7_3:-40888592 None:intergenic
ATTCATCTTTGCTTCAATTC+AGG 0.297404 7_3:-40889502 None:intergenic
ATAAGTGCATGCCAAGGTTT+TGG 0.306516 7_3:-40888726 None:intergenic
TGAGATATAGTGCTAATTAA+AGG 0.306822 7_3:+40889822 Msa1104130:three_prime_UTR
ACTAGAAGTTGAAGTTTCTT+TGG 0.309086 7_3:-40887281 None:intergenic
ACAATTGTTCAGATGGGATT+TGG 0.313660 7_3:+40889276 Msa1104130:CDS
ATTCACAATAATATTTCTAA+TGG 0.321191 7_3:+40888658 Msa1104130:CDS
ATGAATGAAAGATGTAAATT+TGG 0.324289 7_3:-40886347 None:intergenic
TTCTGCAACAGTTGAATTCA+TGG 0.325717 7_3:-40886933 None:intergenic
GAATCAACAATCTCTGAAAA+TGG 0.326758 7_3:+40887199 Msa1104130:CDS
ATTGTTGAGATGTTCAATTT+TGG 0.329946 7_3:-40886908 None:intergenic
GAAATATTATTGTGAATTGC+TGG 0.332246 7_3:-40888652 None:intergenic
TTACTCTTTCTGCAAGACTA+TGG 0.332464 7_3:-40887637 None:intergenic
CTTCTCCTTATGTGAATTCA+AGG 0.338861 7_3:+40887230 Msa1104130:CDS
TCATCTTCAGAGAATGTTAA+TGG 0.340270 7_3:-40889246 None:intergenic
TCTTGTCCCTGGTTGCAATA+AGG 0.355254 7_3:+40887960 Msa1104130:CDS
TGATCAAAGCTTAATTTCAT+AGG 0.358785 7_3:-40889467 None:intergenic
TGGCATAAACCACCATCTAA+TGG 0.361230 7_3:-40888706 None:intergenic
GCTGCAAAATTCTCTTGCTT+TGG 0.361360 7_3:+40886986 Msa1104130:CDS
GAATTGTTCTACTCAATTGC+AGG 0.367833 7_3:+40887147 Msa1104130:CDS
GGCATAAACCACCATCTAAT+GGG 0.369801 7_3:-40888705 None:intergenic
CAGTGGCCAATTTCATAGAT+AGG 0.382519 7_3:-40888383 None:intergenic
ATTGATGTAGTTGTGATGGG+GGG 0.388308 7_3:-40886219 None:intergenic
CATTTGATTAAAGATTGAAT+TGG 0.392918 7_3:-40886387 None:intergenic
CCTCAGCACCATCCTATTAT+GGG 0.394260 7_3:+40888611 Msa1104130:CDS
GTGCCATAATAATAAGAATC+TGG 0.403656 7_3:-40889793 None:intergenic
AGGAATCTAATGGGAATATT+GGG 0.404291 7_3:-40888591 None:intergenic
GATCCAAGTTCTTTCAATGA+TGG 0.405954 7_3:-40887106 None:intergenic
AATTCTCTTGCTTTGGAAGT+AGG 0.408436 7_3:+40886993 Msa1104130:CDS
TTCAAATTATGAAATTGTAT+TGG 0.408593 7_3:-40889321 None:intergenic
CTGGTGTTGTTGCCCATAAT+AGG 0.412733 7_3:-40888623 None:intergenic
ATCTTGATTCTGTATTCTGT+TGG 0.413340 7_3:+40889769 Msa1104130:three_prime_UTR
GATGGTGCTGAGGAATCTAA+TGG 0.422338 7_3:-40888601 None:intergenic
GTTGTTGACTTATCCCATAT+TGG 0.422874 7_3:-40886656 None:intergenic
GCAGAATTCTCAACTGATCC+TGG 0.423123 7_3:+40886950 Msa1104130:CDS
TATTATTCCTTCTAGGTCAC+TGG 0.424071 7_3:+40888058 Msa1104130:intron
TGATTCAGCACTTAGTTCAA+TGG 0.424451 7_3:+40886700 Msa1104130:CDS
CTAAGTGGATTTAATGAAGC+TGG 0.440757 7_3:+40888754 Msa1104130:CDS
GATCAAAGCTTAATTTCATA+GGG 0.441448 7_3:-40889466 None:intergenic
TTTGTCATCAGAGAATTGAT+TGG 0.446145 7_3:+40886767 Msa1104130:CDS
ATTGGTAAATTAGGAAACAT+TGG 0.447086 7_3:+40886785 Msa1104130:CDS
AACTCAGTGGACCCATTAGA+TGG 0.450062 7_3:+40888694 Msa1104130:CDS
GAATTGAAGCAAAGATGAAT+AGG 0.450877 7_3:+40889505 Msa1104130:three_prime_UTR
TTAGCACTATATCTCACAAT+TGG 0.451268 7_3:-40889815 None:intergenic
AATAATTGACAAAGTGAAGA+TGG 0.455330 7_3:-40889869 None:intergenic
ATGTAATCCTTTGGTGCCTC+AGG 0.463142 7_3:-40887578 None:intergenic
AGTCCATCATTGAAAGAACT+TGG 0.466629 7_3:+40887103 Msa1104130:CDS
AAAATTGTCATTTGACATGT+TGG 0.469622 7_3:-40886747 None:intergenic
AAGTGAAGATGGATAATGAT+AGG 0.471377 7_3:-40889858 None:intergenic
CTGACATGAATGTAATCCTT+TGG 0.473631 7_3:-40887587 None:intergenic
AATGAAAAGCTAAGGAAAAG+TGG 0.474413 7_3:-40886268 None:intergenic
TAATGGGTCCACTGAGTTGT+GGG 0.475871 7_3:-40888689 None:intergenic
TTCAATTCAGGCGTAATGAA+TGG 0.481544 7_3:-40889490 None:intergenic
AAATATTATTGTGAATTGCT+GGG 0.490799 7_3:-40888651 None:intergenic
AAGCAGAGGAAGAATCAAAA+GGG 0.491073 7_3:+40887498 Msa1104130:CDS
ATGAAAAGCTAAGGAAAAGT+GGG 0.495022 7_3:-40886267 None:intergenic
CTAATGGGTCCACTGAGTTG+TGG 0.497924 7_3:-40888690 None:intergenic
ATGGCTTAATGATAATACAT+AGG 0.504133 7_3:-40889572 None:intergenic
CCTCAACACAATTGTTCAGA+TGG 0.508498 7_3:+40889269 Msa1104130:CDS
GTGGGATATGAGTGGAAAGG+AGG 0.512720 7_3:-40886325 None:intergenic
GATTGATGTAGTTGTGATGG+GGG 0.513050 7_3:-40886220 None:intergenic
CTTGAATTCACATAAGGAGA+AGG 0.513147 7_3:-40887229 None:intergenic
GCAGCTCTTTCTGCAAAACC+AGG 0.515215 7_3:-40886968 None:intergenic
GTGGAAAGGAGGGTGTGAAA+AGG 0.515484 7_3:-40886314 None:intergenic
TTTGGAAGTAGGAGTTTCAA+TGG 0.516264 7_3:+40887004 Msa1104130:CDS
AAAGCAGAGGAAGAATCAAA+AGG 0.521509 7_3:+40887497 Msa1104130:CDS
GGGATTGATGTAGTTGTGAT+GGG 0.523095 7_3:-40886222 None:intergenic
GGATTGATGTAGTTGTGATG+GGG 0.527217 7_3:-40886221 None:intergenic
TTGATGTAGTTGTGATGGGG+GGG 0.530546 7_3:-40886218 None:intergenic
AATGAAAGATGTAAATTTGG+TGG 0.531045 7_3:-40886344 None:intergenic
TGGCTTAATGATAATACATA+GGG 0.531706 7_3:-40889571 None:intergenic
AAAAGAAAAGTTTCTTCCAA+AGG 0.532200 7_3:+40887253 Msa1104130:CDS
GGAAGATGTAATGTATCAGT+TGG 0.539889 7_3:-40886293 None:intergenic
TGATGAGATCTCACAAACAT+TGG 0.547828 7_3:+40886817 Msa1104130:CDS
ATACAATTTCATAATTTGAA+CGG 0.549604 7_3:+40889324 Msa1104130:CDS
AACCATCTTCAATGCCTACA+TGG 0.550038 7_3:+40886588 Msa1104130:CDS
CTTCTACAAGATCTTGTCCC+TGG 0.550938 7_3:+40887949 Msa1104130:CDS
ATTTAATGAAGCTGGCTCAC+AGG 0.551026 7_3:+40888762 Msa1104130:CDS
GGGGATTGATGTAGTTGTGA+TGG 0.551189 7_3:-40886223 None:intergenic
CTCAATACTAAAATCCACCT+TGG 0.554681 7_3:-40888412 None:intergenic
AAGCGTATGAAAACAAATGA+AGG 0.556302 7_3:+40887449 Msa1104130:CDS
AGATAACATGAAGACAAAAG+AGG 0.556765 7_3:-40889628 None:intergenic
ATGGTGCTGAGGAATCTAAT+GGG 0.559576 7_3:-40888600 None:intergenic
TTAAAATCATGGAAAGTGAA+AGG 0.560569 7_3:-40889666 None:intergenic
GGAGGGAGAAAATCAGTGAA+AGG 0.560766 7_3:+40887920 Msa1104130:CDS
GATGAAAGTGATTGCCATGT+AGG 0.566700 7_3:-40886602 None:intergenic
TAATCCTTTGGTGCCTCAGG+AGG 0.569593 7_3:-40887575 None:intergenic
TACCAACCTTATTGCAACCA+GGG 0.572746 7_3:-40887966 None:intergenic
TGGGATATGAGTGGAAAGGA+GGG 0.574948 7_3:-40886324 None:intergenic
AGTTGGTAAATGAAAAGCTA+AGG 0.575953 7_3:-40886276 None:intergenic
ATCATTGCAGCGTCAAGTTG+AGG 0.580066 7_3:+40888120 Msa1104130:CDS
AAAACCTCCTGAGGCACCAA+AGG 0.580225 7_3:+40887571 Msa1104130:CDS
ATGCACTTATCTTCACTAAG+TGG 0.581033 7_3:+40888739 Msa1104130:CDS
CTCAACACAATTGTTCAGAT+GGG 0.581106 7_3:+40889270 Msa1104130:CDS
GGTGGTTTATGCCAAAACCT+TGG 0.587041 7_3:+40888715 Msa1104130:CDS
TGCCATGTAGGCATTGAAGA+TGG 0.593613 7_3:-40886590 None:intergenic
ATGAAAGATGTAAATTTGGT+GGG 0.596114 7_3:-40886343 None:intergenic
AACTTCTAGTAACCCTGCAA+TGG 0.607773 7_3:+40887294 Msa1104130:CDS
TTACCAACCTTATTGCAACC+AGG 0.614090 7_3:-40887967 None:intergenic
AGAGAGATCCAGCAAGAACA+AGG 0.616539 7_3:-40886188 None:intergenic
ATGTTGGAATTTGAAGCTGC+AGG 0.621377 7_3:-40886731 None:intergenic
CCATCTGAACAATTGTGTTG+AGG 0.622085 7_3:-40889269 None:intergenic
GGTACAAATAGTAATAATGG+AGG 0.627017 7_3:+40887521 Msa1104130:CDS
AAAATTGAACATCTCAACAA+TGG 0.629044 7_3:+40886910 Msa1104130:CDS
TGAAAAGCTAAGGAAAAGTG+GGG 0.633223 7_3:-40886266 None:intergenic
TAAATTTGGTGGGATATGAG+TGG 0.635559 7_3:-40886333 None:intergenic
TGATCAAAATGATGTTGAGG+TGG 0.637803 7_3:-40886560 None:intergenic
TGTTGTTGCCCATAATAGGA+TGG 0.639120 7_3:-40888619 None:intergenic
GATTGATCAAAATGATGTTG+AGG 0.642732 7_3:-40886563 None:intergenic
GTGAAGATAAGTGCATGCCA+AGG 0.643919 7_3:-40888732 None:intergenic
AAATGGTAAAGTAAAAGCAG+AGG 0.646618 7_3:+40887484 Msa1104130:CDS
ATTCATGTCAGAGCAAGAAG+AGG 0.647303 7_3:+40887599 Msa1104130:CDS
AGCAGAGGAAGAATCAAAAG+GGG 0.649630 7_3:+40887499 Msa1104130:CDS
TTGGTGGGATATGAGTGGAA+AGG 0.655839 7_3:-40886328 None:intergenic
GAGCAATTCAAAACCTCCTG+AGG 0.656462 7_3:+40887562 Msa1104130:CDS
CCCATAATAGGATGGTGCTG+AGG 0.665748 7_3:-40888611 None:intergenic
TGAAGATGGATAATGATAGG+TGG 0.669243 7_3:-40889855 None:intergenic
ATCAAAGCTTAATTTCATAG+GGG 0.673297 7_3:-40889465 None:intergenic
AACTGTGACCCACAACTCAG+TGG 0.673850 7_3:+40888681 Msa1104130:CDS
TCAGTGGACCCATTAGATGG+TGG 0.680214 7_3:+40888697 Msa1104130:CDS
ATCCACCTTGGTGTTAACAG+TGG 0.694539 7_3:-40888400 None:intergenic
GCAGAGGAAGAATCAAAAGG+GGG 0.717660 7_3:+40887500 Msa1104130:CDS
ATTGGCCACTGTTAACACCA+AGG 0.721123 7_3:+40888395 Msa1104130:CDS
GGCCACTGTTAACACCAAGG+TGG 0.728183 7_3:+40888398 Msa1104130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAATAATAATAATAA+TGG - chr7_3:40889594-40889613 None:intergenic 0.0%
!! TTATTATTATTATTATAATT+AGG + chr7_3:40889594-40889613 Msa1104130:three_prime_UTR 0.0%
!! TTGAAAAATTAATTTATTGA+AGG - chr7_3:40886463-40886482 None:intergenic 10.0%
!! AATAAAGTTAATTGTATTAT+AGG + chr7_3:40888807-40888826 Msa1104130:intron 10.0%
!! ATAAAGTTAATTGTATTATA+GGG + chr7_3:40888808-40888827 Msa1104130:intron 10.0%
!!! ATTTTTTATAAATGATTAGA+TGG - chr7_3:40888931-40888950 None:intergenic 10.0%
!!! CAACATAATTTTTTTTTATA+AGG - chr7_3:40889404-40889423 None:intergenic 10.0%
!! AGATAAAAAAATTAAAATCA+TGG - chr7_3:40889680-40889699 None:intergenic 10.0%
!!! TGATTTTAATTTTTTTATCT+TGG + chr7_3:40889680-40889699 Msa1104130:three_prime_UTR 10.0%
!!! GATTTTAATTTTTTTATCTT+GGG + chr7_3:40889681-40889700 Msa1104130:three_prime_UTR 10.0%
!!! ATTTTAATTTTTTTATCTTG+GGG + chr7_3:40889682-40889701 Msa1104130:three_prime_UTR 10.0%
!! AATGACTAATTTAATTAAGA+GGG - chr7_3:40887357-40887376 None:intergenic 15.0%
!! AAATGACTAATTTAATTAAG+AGG - chr7_3:40887358-40887377 None:intergenic 15.0%
!!! TGTAAACTAATTTTTGTTAT+AGG + chr7_3:40887894-40887913 Msa1104130:intron 15.0%
!! GGTAATAATTAGATAAATTA+AGG + chr7_3:40887985-40888004 Msa1104130:intron 15.0%
!! TTGTTTATATTATAAATTGG+AGG + chr7_3:40888266-40888285 Msa1104130:intron 15.0%
!! TGTTTATATTATAAATTGGA+GGG + chr7_3:40888267-40888286 Msa1104130:intron 15.0%
!!! ATTCACAATAATATTTCTAA+TGG + chr7_3:40888658-40888677 Msa1104130:CDS 15.0%
!!! ACATTTTAACTTTACAAATT+AGG - chr7_3:40888905-40888924 None:intergenic 15.0%
!!! TAATTTGTAAAGTTAAAATG+TGG + chr7_3:40888904-40888923 Msa1104130:intron 15.0%
!! TTATAATAATTCATACGATT+TGG - chr7_3:40888954-40888973 None:intergenic 15.0%
!! TTCAAATTATGAAATTGTAT+TGG - chr7_3:40889324-40889343 None:intergenic 15.0%
!! ATACAATTTCATAATTTGAA+CGG + chr7_3:40889324-40889343 Msa1104130:CDS 15.0%
!!! ACATATACTTTTTTTATGTT+TGG - chr7_3:40889357-40889376 None:intergenic 15.0%
!!! TTTTAATTTTTTTATCTTGG+GGG + chr7_3:40889683-40889702 Msa1104130:three_prime_UTR 15.0%
!!! ATTCATAAAAAGAATTTTGA+TGG + chr7_3:40889925-40889944 Msa1104130:three_prime_UTR 15.0%
!!! TTCATAAAAAGAATTTTGAT+GGG + chr7_3:40889926-40889945 Msa1104130:three_prime_UTR 15.0%
!! ATGAATGAAAGATGTAAATT+TGG - chr7_3:40886350-40886369 None:intergenic 20.0%
!! CATTTGATTAAAGATTGAAT+TGG - chr7_3:40886390-40886409 None:intergenic 20.0%
!!! AAAGAATTGATTTTCCATTA+AGG - chr7_3:40886519-40886538 None:intergenic 20.0%
!! TTTCATATTCTAAATCCAAA+AGG + chr7_3:40887375-40887394 Msa1104130:intron 20.0%
!! TTCATATTCTAAATCCAAAA+GGG + chr7_3:40887376-40887395 Msa1104130:intron 20.0%
!!! CATTTTTGTTTTTGCAATAT+AGG + chr7_3:40887400-40887419 Msa1104130:intron 20.0%
!!! ACTAATTTTTGTTATAGGTT+AGG + chr7_3:40887899-40887918 Msa1104130:intron 20.0%
!! TATGAATTATTATTCCTTCT+AGG + chr7_3:40888051-40888070 Msa1104130:intron 20.0%
!!! GCATACATAACAATTTTATT+TGG + chr7_3:40888178-40888197 Msa1104130:intron 20.0%
!!! TCAATTTGTTGACTTTTTTT+TGG + chr7_3:40888527-40888546 Msa1104130:intron 20.0%
!! GTTTCAATCAAATAATTCTT+TGG + chr7_3:40888564-40888583 Msa1104130:CDS 20.0%
!! AAATATTATTGTGAATTGCT+GGG - chr7_3:40888654-40888673 None:intergenic 20.0%
!! TACTGAAAAATGAAAATCAT+TGG - chr7_3:40889225-40889244 None:intergenic 20.0%
!! ACATCAACAAGAAATTTAAT+TGG + chr7_3:40889543-40889562 Msa1104130:three_prime_UTR 20.0%
! ATGAAAGATGTAAATTTGGT+GGG - chr7_3:40886346-40886365 None:intergenic 25.0%
! AATGAAAGATGTAAATTTGG+TGG - chr7_3:40886347-40886366 None:intergenic 25.0%
!! ATCCTTAATCTTTTCCTTAA+TGG + chr7_3:40886502-40886521 Msa1104130:exon 25.0%
! TTCCATTAAGGAAAAGATTA+AGG - chr7_3:40886507-40886526 None:intergenic 25.0%
!!! ATTGTTTTTACACACCAATA+TGG + chr7_3:40886642-40886661 Msa1104130:CDS 25.0%
!!! TTGTTTTTACACACCAATAT+GGG + chr7_3:40886643-40886662 Msa1104130:CDS 25.0%
!! AAAATTGTCATTTGACATGT+TGG - chr7_3:40886750-40886769 None:intergenic 25.0%
! AGAGAATTGATTGGTAAATT+AGG + chr7_3:40886776-40886795 Msa1104130:CDS 25.0%
! ATTGGTAAATTAGGAAACAT+TGG + chr7_3:40886785-40886804 Msa1104130:CDS 25.0%
!! ATTGTTGAGATGTTCAATTT+TGG - chr7_3:40886911-40886930 None:intergenic 25.0%
! AAAATTGAACATCTCAACAA+TGG + chr7_3:40886910-40886929 Msa1104130:CDS 25.0%
!! AGTTTTCCATTTTCCAATAA+TGG - chr7_3:40887067-40887086 None:intergenic 25.0%
! AAAAGAAAAGTTTCTTCCAA+AGG + chr7_3:40887253-40887272 Msa1104130:CDS 25.0%
!!! ATTTTTAACTTACCATTGCA+GGG - chr7_3:40887309-40887328 None:intergenic 25.0%
!!! AATTTTTAACTTACCATTGC+AGG - chr7_3:40887310-40887329 None:intergenic 25.0%
!! AAAAACAAAAATGACCCTTT+TGG - chr7_3:40887393-40887412 None:intergenic 25.0%
! GAAGGTGAAAAAATTGAAAA+TGG + chr7_3:40887467-40887486 Msa1104130:CDS 25.0%
! ATGATTGTTAGTGTCAATTA+TGG - chr7_3:40887686-40887705 None:intergenic 25.0%
!! TCGTATTATAGCATATTTTG+AGG - chr7_3:40887799-40887818 None:intergenic 25.0%
!!! AATTTTTGTTATAGGTTAGG+AGG + chr7_3:40887902-40887921 Msa1104130:intron 25.0%
!!! ATTTTTGTTATAGGTTAGGA+GGG + chr7_3:40887903-40887922 Msa1104130:intron 25.0%
! TTCAAAAATTTATCAACCTC+AGG + chr7_3:40888225-40888244 Msa1104130:intron 25.0%
! TCTCAAAAGATGTAAGTTTA+AGG + chr7_3:40888442-40888461 Msa1104130:intron 25.0%
! CTCAAAAGATGTAAGTTTAA+GGG + chr7_3:40888443-40888462 Msa1104130:intron 25.0%
! GAAATATTATTGTGAATTGC+TGG - chr7_3:40888655-40888674 None:intergenic 25.0%
!! AGGTCTAAAATACAAAAGTT+AGG - chr7_3:40888885-40888904 None:intergenic 25.0%
!! ACATTCCGACTTTATATTTT+AGG + chr7_3:40889041-40889060 Msa1104130:intron 25.0%
! CTAGACCTAAAATATAAAGT+CGG - chr7_3:40889049-40889068 None:intergenic 25.0%
! TAGTTTATAAAATTCGAACG+TGG + chr7_3:40889066-40889085 Msa1104130:intron 25.0%
!!! ATTTTCCAGTTATTTTGAGA+CGG - chr7_3:40889093-40889112 None:intergenic 25.0%
! ATCAAAGCTTAATTTCATAG+GGG - chr7_3:40889468-40889487 None:intergenic 25.0%
! GATCAAAGCTTAATTTCATA+GGG - chr7_3:40889469-40889488 None:intergenic 25.0%
! TGATCAAAGCTTAATTTCAT+AGG - chr7_3:40889470-40889489 None:intergenic 25.0%
! TGGCTTAATGATAATACATA+GGG - chr7_3:40889574-40889593 None:intergenic 25.0%
! ATGGCTTAATGATAATACAT+AGG - chr7_3:40889575-40889594 None:intergenic 25.0%
! TTAAAATCATGGAAAGTGAA+AGG - chr7_3:40889669-40889688 None:intergenic 25.0%
! CTATTCACTGTAAAATCTTT+AGG + chr7_3:40889746-40889765 Msa1104130:three_prime_UTR 25.0%
! TGAGATATAGTGCTAATTAA+AGG + chr7_3:40889822-40889841 Msa1104130:three_prime_UTR 25.0%
! AATAATTGACAAAGTGAAGA+TGG - chr7_3:40889872-40889891 None:intergenic 25.0%
ATGAAAAGCTAAGGAAAAGT+GGG - chr7_3:40886270-40886289 None:intergenic 30.0%
AATGAAAAGCTAAGGAAAAG+TGG - chr7_3:40886271-40886290 None:intergenic 30.0%
!! AGTTGGTAAATGAAAAGCTA+AGG - chr7_3:40886279-40886298 None:intergenic 30.0%
GATTGATCAAAATGATGTTG+AGG - chr7_3:40886566-40886585 None:intergenic 30.0%
TTGGTGTGTAAAAACAATCT+TGG - chr7_3:40886640-40886659 None:intergenic 30.0%
TTTGTCATCAGAGAATTGAT+TGG + chr7_3:40886767-40886786 Msa1104130:CDS 30.0%
!! ATTTTGGAGGAGAATTCAAA+GGG - chr7_3:40886895-40886914 None:intergenic 30.0%
!! AATTTTGGAGGAGAATTCAA+AGG - chr7_3:40886896-40886915 None:intergenic 30.0%
TCAAAGATCTACTCCATTAT+TGG + chr7_3:40887051-40887070 Msa1104130:CDS 30.0%
TCTACTCCATTATTGGAAAA+TGG + chr7_3:40887058-40887077 Msa1104130:CDS 30.0%
! GAATCAACAATCTCTGAAAA+TGG + chr7_3:40887199-40887218 Msa1104130:CDS 30.0%
! CTTTTCCTTGAATTCACATA+AGG - chr7_3:40887238-40887257 None:intergenic 30.0%
!!! AGTTTCTTTGGTTTTTCCTT+TGG - chr7_3:40887272-40887291 None:intergenic 30.0%
ACTAGAAGTTGAAGTTTCTT+TGG - chr7_3:40887284-40887303 None:intergenic 30.0%
AAGCGTATGAAAACAAATGA+AGG + chr7_3:40887449-40887468 Msa1104130:CDS 30.0%
AAATGGTAAAGTAAAAGCAG+AGG + chr7_3:40887484-40887503 Msa1104130:CDS 30.0%
GGTACAAATAGTAATAATGG+AGG + chr7_3:40887521-40887540 Msa1104130:CDS 30.0%
CACATATTGTGGCAATATAA+AGG - chr7_3:40887736-40887755 None:intergenic 30.0%
! ACCACAATTTAAAACCATGA+TGG + chr7_3:40887837-40887856 Msa1104130:intron 30.0%
TAACATGTATATTGCCATCA+TGG - chr7_3:40887854-40887873 None:intergenic 30.0%
ATGATGGCAATATACATGTT+AGG + chr7_3:40887853-40887872 Msa1104130:intron 30.0%
AAGTCATGTAATAATTCCTG+AGG - chr7_3:40888244-40888263 None:intergenic 30.0%
AGGAATCTAATGGGAATATT+GGG - chr7_3:40888594-40888613 None:intergenic 30.0%
! ACAGGTAATCTATTTCTTCT+AGG + chr7_3:40888780-40888799 Msa1104130:intron 30.0%
AACTGTCAAATCAAGATTAG+TGG + chr7_3:40889015-40889034 Msa1104130:intron 30.0%
! AAAAGTGCATGAAACTAGAA+TGG - chr7_3:40889180-40889199 None:intergenic 30.0%
TCATCTTCAGAGAATGTTAA+TGG - chr7_3:40889249-40889268 None:intergenic 30.0%
ATTCATCTTTGCTTCAATTC+AGG - chr7_3:40889505-40889524 None:intergenic 30.0%
GAATTGAAGCAAAGATGAAT+AGG + chr7_3:40889505-40889524 Msa1104130:three_prime_UTR 30.0%
AGATAACATGAAGACAAAAG+AGG - chr7_3:40889631-40889650 None:intergenic 30.0%
!!! TAATTTTTTTATCTTGGGGG+TGG + chr7_3:40889686-40889705 Msa1104130:three_prime_UTR 30.0%
!!! AATTTTTTTATCTTGGGGGT+GGG + chr7_3:40889687-40889706 Msa1104130:three_prime_UTR 30.0%
ATCTTGATTCTGTATTCTGT+TGG + chr7_3:40889769-40889788 Msa1104130:three_prime_UTR 30.0%
GGTCCAGATTCTTATTATTA+TGG + chr7_3:40889790-40889809 Msa1104130:three_prime_UTR 30.0%
GTGCCATAATAATAAGAATC+TGG - chr7_3:40889796-40889815 None:intergenic 30.0%
TTAGCACTATATCTCACAAT+TGG - chr7_3:40889818-40889837 None:intergenic 30.0%
AAGTGAAGATGGATAATGAT+AGG - chr7_3:40889861-40889880 None:intergenic 30.0%
TGAAAAGCTAAGGAAAAGTG+GGG - chr7_3:40886269-40886288 None:intergenic 35.0%
GGAAGATGTAATGTATCAGT+TGG - chr7_3:40886296-40886315 None:intergenic 35.0%
! TAAATTTGGTGGGATATGAG+TGG - chr7_3:40886336-40886355 None:intergenic 35.0%
TGATCAAAATGATGTTGAGG+TGG - chr7_3:40886563-40886582 None:intergenic 35.0%
!! GTTGTTGACTTATCCCATAT+TGG - chr7_3:40886659-40886678 None:intergenic 35.0%
TGATTCAGCACTTAGTTCAA+TGG + chr7_3:40886700-40886719 Msa1104130:CDS 35.0%
TGATGAGATCTCACAAACAT+TGG + chr7_3:40886817-40886836 Msa1104130:CDS 35.0%
!! TTTTGGAGGAGAATTCAAAG+GGG - chr7_3:40886894-40886913 None:intergenic 35.0%
! GTTGAGATGTTCAATTTTGG+AGG - chr7_3:40886908-40886927 None:intergenic 35.0%
TTCTGCAACAGTTGAATTCA+TGG - chr7_3:40886936-40886955 None:intergenic 35.0%
!! AATTCTCTTGCTTTGGAAGT+AGG + chr7_3:40886993-40887012 Msa1104130:CDS 35.0%
TTTGGAAGTAGGAGTTTCAA+TGG + chr7_3:40887004-40887023 Msa1104130:CDS 35.0%
AGTCCATCATTGAAAGAACT+TGG + chr7_3:40887103-40887122 Msa1104130:CDS 35.0%
GATCCAAGTTCTTTCAATGA+TGG - chr7_3:40887109-40887128 None:intergenic 35.0%
GAATTGTTCTACTCAATTGC+AGG + chr7_3:40887147-40887166 Msa1104130:CDS 35.0%
CTTGAATTCACATAAGGAGA+AGG - chr7_3:40887232-40887251 None:intergenic 35.0%
CTTCTCCTTATGTGAATTCA+AGG + chr7_3:40887230-40887249 Msa1104130:CDS 35.0%
AAAGCAGAGGAAGAATCAAA+AGG + chr7_3:40887497-40887516 Msa1104130:CDS 35.0%
AAGCAGAGGAAGAATCAAAA+GGG + chr7_3:40887498-40887517 Msa1104130:CDS 35.0%
! GGGGGTACAAATAGTAATAA+TGG + chr7_3:40887518-40887537 Msa1104130:CDS 35.0%
CTGACATGAATGTAATCCTT+TGG - chr7_3:40887590-40887609 None:intergenic 35.0%
TTACTCTTTCTGCAAGACTA+TGG - chr7_3:40887640-40887659 None:intergenic 35.0%
TGTCACATTGTCACATATTG+TGG - chr7_3:40887747-40887766 None:intergenic 35.0%
TGCGAAAAAAATTGTTGTCG+CGG + chr7_3:40887770-40887789 Msa1104130:intron 35.0%
!!! GCCATCATGGTTTTAAATTG+TGG - chr7_3:40887841-40887860 None:intergenic 35.0%
TATTATTCCTTCTAGGTCAC+TGG + chr7_3:40888058-40888077 Msa1104130:intron 35.0%
GCAGTTCCTATCTATGAAAT+TGG + chr7_3:40888377-40888396 Msa1104130:intron 35.0%
CTCAATACTAAAATCCACCT+TGG - chr7_3:40888415-40888434 None:intergenic 35.0%
GAGGAATCTAATGGGAATAT+TGG - chr7_3:40888595-40888614 None:intergenic 35.0%
ATGCACTTATCTTCACTAAG+TGG + chr7_3:40888739-40888758 Msa1104130:CDS 35.0%
! CTAAGTGGATTTAATGAAGC+TGG + chr7_3:40888754-40888773 Msa1104130:CDS 35.0%
AATCTCTGATCTTGATCAGA+CGG - chr7_3:40888857-40888876 None:intergenic 35.0%
CTCAACACAATTGTTCAGAT+GGG + chr7_3:40889270-40889289 Msa1104130:CDS 35.0%
ACAATTGTTCAGATGGGATT+TGG + chr7_3:40889276-40889295 Msa1104130:CDS 35.0%
!!! AACTTGTTTTGTCCAAATGC+AGG + chr7_3:40889429-40889448 Msa1104130:intron 35.0%
TTCAATTCAGGCGTAATGAA+TGG - chr7_3:40889493-40889512 None:intergenic 35.0%
TGAAGATGGATAATGATAGG+TGG - chr7_3:40889858-40889877 None:intergenic 35.0%
! ATTGATGTAGTTGTGATGGG+GGG - chr7_3:40886222-40886241 None:intergenic 40.0%
GATTGATGTAGTTGTGATGG+GGG - chr7_3:40886223-40886242 None:intergenic 40.0%
GGATTGATGTAGTTGTGATG+GGG - chr7_3:40886224-40886243 None:intergenic 40.0%
GGGATTGATGTAGTTGTGAT+GGG - chr7_3:40886225-40886244 None:intergenic 40.0%
AACCATCTTCAATGCCTACA+TGG + chr7_3:40886588-40886607 Msa1104130:CDS 40.0%
GATGAAAGTGATTGCCATGT+AGG - chr7_3:40886605-40886624 None:intergenic 40.0%
! ATGTTGGAATTTGAAGCTGC+AGG - chr7_3:40886734-40886753 None:intergenic 40.0%
GCTGCAAAATTCTCTTGCTT+TGG + chr7_3:40886986-40887005 Msa1104130:CDS 40.0%
AACTTCTAGTAACCCTGCAA+TGG + chr7_3:40887294-40887313 Msa1104130:CDS 40.0%
AGCAGAGGAAGAATCAAAAG+GGG + chr7_3:40887499-40887518 Msa1104130:CDS 40.0%
ATTCATGTCAGAGCAAGAAG+AGG + chr7_3:40887599-40887618 Msa1104130:CDS 40.0%
TACCAACCTTATTGCAACCA+GGG - chr7_3:40887969-40887988 None:intergenic 40.0%
TTACCAACCTTATTGCAACC+AGG - chr7_3:40887970-40887989 None:intergenic 40.0%
CAGTGGCCAATTTCATAGAT+AGG - chr7_3:40888386-40888405 None:intergenic 40.0%
!! AGTTTAAGGGCTCTAGACAA+TGG + chr7_3:40888456-40888475 Msa1104130:intron 40.0%
! ATGGTGCTGAGGAATCTAAT+GGG - chr7_3:40888603-40888622 None:intergenic 40.0%
TGTTGTTGCCCATAATAGGA+TGG - chr7_3:40888622-40888641 None:intergenic 40.0%
GGCATAAACCACCATCTAAT+GGG - chr7_3:40888708-40888727 None:intergenic 40.0%
TGGCATAAACCACCATCTAA+TGG - chr7_3:40888709-40888728 None:intergenic 40.0%
! ATAAGTGCATGCCAAGGTTT+TGG - chr7_3:40888729-40888748 None:intergenic 40.0%
! ATTTAATGAAGCTGGCTCAC+AGG + chr7_3:40888762-40888781 Msa1104130:CDS 40.0%
TCCCTTCATTCACGTAGTTT+CGG + chr7_3:40888987-40889006 Msa1104130:intron 40.0%
CCATCTGAACAATTGTGTTG+AGG - chr7_3:40889272-40889291 None:intergenic 40.0%
CCTCAACACAATTGTTCAGA+TGG + chr7_3:40889269-40889288 Msa1104130:CDS 40.0%
!! AGTTGATTTGTGCCTGCATT+TGG - chr7_3:40889444-40889463 None:intergenic 40.0%
AGAGAGATCCAGCAAGAACA+AGG - chr7_3:40886191-40886210 None:intergenic 45.0%
! TTGATGTAGTTGTGATGGGG+GGG - chr7_3:40886221-40886240 None:intergenic 45.0%
GGGGATTGATGTAGTTGTGA+TGG - chr7_3:40886226-40886245 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGAA+GGG - chr7_3:40886246-40886265 None:intergenic 45.0%
TGGGATATGAGTGGAAAGGA+GGG - chr7_3:40886327-40886346 None:intergenic 45.0%
TTGGTGGGATATGAGTGGAA+AGG - chr7_3:40886331-40886350 None:intergenic 45.0%
!! TGCCATGTAGGCATTGAAGA+TGG - chr7_3:40886593-40886612 None:intergenic 45.0%
GCAGAATTCTCAACTGATCC+TGG + chr7_3:40886950-40886969 Msa1104130:CDS 45.0%
GCAGAGGAAGAATCAAAAGG+GGG + chr7_3:40887500-40887519 Msa1104130:CDS 45.0%
GAGCAATTCAAAACCTCCTG+AGG + chr7_3:40887562-40887581 Msa1104130:CDS 45.0%
!! ATGTAATCCTTTGGTGCCTC+AGG - chr7_3:40887581-40887600 None:intergenic 45.0%
GGAGGGAGAAAATCAGTGAA+AGG + chr7_3:40887920-40887939 Msa1104130:CDS 45.0%
CTTCTACAAGATCTTGTCCC+TGG + chr7_3:40887949-40887968 Msa1104130:CDS 45.0%
TCTTGTCCCTGGTTGCAATA+AGG + chr7_3:40887960-40887979 Msa1104130:CDS 45.0%
! TGCTTTTCCAGTGACCTAGA+AGG - chr7_3:40888068-40888087 None:intergenic 45.0%
! ATCATTGCAGCGTCAAGTTG+AGG + chr7_3:40888120-40888139 Msa1104130:CDS 45.0%
ATTGGCCACTGTTAACACCA+AGG + chr7_3:40888395-40888414 Msa1104130:CDS 45.0%
!! ATCCACCTTGGTGTTAACAG+TGG - chr7_3:40888403-40888422 None:intergenic 45.0%
! GATGGTGCTGAGGAATCTAA+TGG - chr7_3:40888604-40888623 None:intergenic 45.0%
TCCTCAGCACCATCCTATTA+TGG + chr7_3:40888610-40888629 Msa1104130:CDS 45.0%
CCTCAGCACCATCCTATTAT+GGG + chr7_3:40888611-40888630 Msa1104130:CDS 45.0%
!! CTGGTGTTGTTGCCCATAAT+AGG - chr7_3:40888626-40888645 None:intergenic 45.0%
! TGTGAATTGCTGGGTTTTGC+TGG - chr7_3:40888645-40888664 None:intergenic 45.0%
! TAATGGGTCCACTGAGTTGT+GGG - chr7_3:40888692-40888711 None:intergenic 45.0%
AACTCAGTGGACCCATTAGA+TGG + chr7_3:40888694-40888713 Msa1104130:CDS 45.0%
GGTGGTTTATGCCAAAACCT+TGG + chr7_3:40888715-40888734 Msa1104130:CDS 45.0%
GTGAAGATAAGTGCATGCCA+AGG - chr7_3:40888735-40888754 None:intergenic 45.0%
CCCGAAACTACGTGAATGAA+GGG - chr7_3:40888991-40889010 None:intergenic 45.0%
CCCTTCATTCACGTAGTTTC+GGG + chr7_3:40888988-40889007 Msa1104130:intron 45.0%
ACCCGAAACTACGTGAATGA+AGG - chr7_3:40888992-40889011 None:intergenic 45.0%
GTGGACCGTCTCAAAATAAC+TGG + chr7_3:40889085-40889104 Msa1104130:intron 45.0%
!!! TTTTTGTTTATATTATAAAT+TGG + chr7_3:40888263-40888282 Msa1104130:intron 5.0%
GAGAGAGAGAGAGAGAGAAG+GGG - chr7_3:40886245-40886264 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+AGG - chr7_3:40886247-40886266 None:intergenic 50.0%
! GTGGAAAGGAGGGTGTGAAA+AGG - chr7_3:40886317-40886336 None:intergenic 50.0%
GTGGGATATGAGTGGAAAGG+AGG - chr7_3:40886328-40886347 None:intergenic 50.0%
GCAGCTCTTTCTGCAAAACC+AGG - chr7_3:40886971-40886990 None:intergenic 50.0%
! AAAACCTCCTGAGGCACCAA+AGG + chr7_3:40887571-40887590 Msa1104130:CDS 50.0%
!! TAATCCTTTGGTGCCTCAGG+AGG - chr7_3:40887578-40887597 None:intergenic 50.0%
TACGACCGCAATTGCAGTTG+CGG + chr7_3:40887814-40887833 Msa1104130:intron 50.0%
GTCCCTGGTTGCAATAAGGT+TGG + chr7_3:40887964-40887983 Msa1104130:intron 50.0%
! CCCATAATAGGATGGTGCTG+AGG - chr7_3:40888614-40888633 None:intergenic 50.0%
AACTGTGACCCACAACTCAG+TGG + chr7_3:40888681-40888700 Msa1104130:CDS 50.0%
! CTAATGGGTCCACTGAGTTG+TGG - chr7_3:40888693-40888712 None:intergenic 50.0%
TCAGTGGACCCATTAGATGG+TGG + chr7_3:40888697-40888716 Msa1104130:CDS 50.0%
GTGGTCCGCAACTGCAATTG+CGG - chr7_3:40887822-40887841 None:intergenic 55.0%
GGCCACTGTTAACACCAAGG+TGG + chr7_3:40888398-40888417 Msa1104130:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 40886183 40889950 40886183 ID=Msa1104130;Name=Msa1104130
chr7_3 mRNA 40886183 40889950 40886183 ID=Msa1104130-mRNA-1;Parent=Msa1104130;Name=Msa1104130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=338|1|1|1|1|1|8|477|527
chr7_3 exon 40886183 40887315 40886183 ID=Msa1104130-mRNA-1:exon:8324;Parent=Msa1104130-mRNA-1
chr7_3 exon 40887422 40887655 40887422 ID=Msa1104130-mRNA-1:exon:8325;Parent=Msa1104130-mRNA-1
chr7_3 exon 40887916 40887981 40887916 ID=Msa1104130-mRNA-1:exon:8326;Parent=Msa1104130-mRNA-1
chr7_3 exon 40888073 40888141 40888073 ID=Msa1104130-mRNA-1:exon:8327;Parent=Msa1104130-mRNA-1
chr7_3 exon 40888381 40888452 40888381 ID=Msa1104130-mRNA-1:exon:8328;Parent=Msa1104130-mRNA-1
chr7_3 exon 40888562 40888783 40888562 ID=Msa1104130-mRNA-1:exon:8329;Parent=Msa1104130-mRNA-1
chr7_3 exon 40889243 40889345 40889243 ID=Msa1104130-mRNA-1:exon:8330;Parent=Msa1104130-mRNA-1
chr7_3 exon 40889451 40889950 40889451 ID=Msa1104130-mRNA-1:exon:8331;Parent=Msa1104130-mRNA-1
chr7_3 five_prime_UTR 40886183 40886520 40886183 ID=Msa1104130-mRNA-1:five_prime_utr;Parent=Msa1104130-mRNA-1
chr7_3 CDS 40886521 40887315 40886521 ID=Msa1104130-mRNA-1:cds;Parent=Msa1104130-mRNA-1
chr7_3 CDS 40887422 40887655 40887422 ID=Msa1104130-mRNA-1:cds;Parent=Msa1104130-mRNA-1
chr7_3 CDS 40887916 40887981 40887916 ID=Msa1104130-mRNA-1:cds;Parent=Msa1104130-mRNA-1
chr7_3 CDS 40888073 40888141 40888073 ID=Msa1104130-mRNA-1:cds;Parent=Msa1104130-mRNA-1
chr7_3 CDS 40888381 40888452 40888381 ID=Msa1104130-mRNA-1:cds;Parent=Msa1104130-mRNA-1
chr7_3 CDS 40888562 40888783 40888562 ID=Msa1104130-mRNA-1:cds;Parent=Msa1104130-mRNA-1
chr7_3 CDS 40889243 40889345 40889243 ID=Msa1104130-mRNA-1:cds;Parent=Msa1104130-mRNA-1
chr7_3 CDS 40889451 40889473 40889451 ID=Msa1104130-mRNA-1:cds;Parent=Msa1104130-mRNA-1
chr7_3 three_prime_UTR 40889474 40889950 40889474 ID=Msa1104130-mRNA-1:three_prime_utr;Parent=Msa1104130-mRNA-1
Gene Sequence

>Msa1104130

ATGGAAAATCAATTCTTTTCAAATTCAAACACTAGTGTTCCACCTCAACATCATTTTGATCAATCACAACCATCTTCAATGCCTACATGGCAATCACTTTCATCAGAACAACAGAACCAAGATTGTTTTTACACACCAATATGGGATAAGTCAACAACAGATCAATGTGTTAATCAATTTGATTCAGCACTTAGTTCAATGGTATCATCACCTGCAGCTTCAAATTCCAACATGTCAAATGACAATTTTGTCATCAGAGAATTGATTGGTAAATTAGGAAACATTGGTAATTGTTCTGATGAGATCTCACAAACATTGGTTGCTGCAAATTCATACATCAATAGCAATAACAATACTTCATGTTACAACACCCCTTTGAATTCTCCTCCAAAATTGAACATCTCAACAATGGCCATGAATTCAACTGTTGCAGAATTCTCAACTGATCCTGGTTTTGCAGAAAGAGCTGCAAAATTCTCTTGCTTTGGAAGTAGGAGTTTCAATGGAAGAACAACTCAATTGAGTCAAAGTCAAAGATCTACTCCATTATTGGAAAATGGAAAACTCTCTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAATCTCAAGAGAATATGAATTGTTCTACTCAATTGCAGGATCAAATTGAAGTTAACAATTCTCAAGAAGAATCAACAATCTCTGAAAATGGTGTGAAACCTTCTCCTTATGTGAATTCAAGGAAAAGAAAAGTTTCTTCCAAAGGAAAAACCAAAGAAACTTCAACTTCTAGTAACCCTGCAATGGCTTGTGAAGCTGAAGACTCAAATGCAAAGCGTATGAAAACAAATGAAGGTGAAAAAATTGAAAATGGTAAAGTAAAAGCAGAGGAAGAATCAAAAGGGGGTACAAATAGTAATAATGGAGGTGATGAAAAACAGAATAAGAGCAATTCAAAACCTCCTGAGGCACCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTAGGAGGGAGAAAATCAGTGAAAGGATGAAGCTTCTACAAGATCTTGTCCCTGGTTGCAATAAGGTCACTGGAAAAGCACTCATGCTTGATGAAATTATAAACTATGTGCAATCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAATTGGCCACTGTTAACACCAAGGTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATGTTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCATTAGATTCCTCAGCACCATCCTATTATGGGCAACAACACCAGCAAAACCCAGCAATTCACAATAATATTTCTAATGGAACTGTGACCCACAACTCAGTGGACCCATTAGATGGTGGTTTATGCCAAAACCTTGGCATGCACTTATCTTCACTAAGTGGATTTAATGAAGCTGGCTCACAGTATCCATTAACATTCTCTGAAGATGACCTCAACACAATTGTTCAGATGGGATTTGGACAAACTGACAATAGAAAAACACCAATACAATTTCATAATTTGAACGGCACAAATCAACTACCCCTATGA
Protein sequence

>Msa1104130

MENQFFSNSNTSVPPQHHFDQSQPSSMPTWQSLSSEQQNQDCFYTPIWDKSTTDQCVNQFDSALSSMVSSPAASNSNMSNDNFVIRELIGKLGNIGNCSDEISQTLVAANSYINSNNNTSCYNTPLNSPPKLNISTMAMNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLSQSQRSTPLLENGKLSRVSSSPSLKELGSQSQENMNCSTQLQDQIEVNNSQEESTISENGVKPSPYVNSRKRKVSSKGKTKETSTSSNPAMACEAEDSNAKRMKTNEGEKIENGKVKAEEESKGGTNSNNGGDEKQNKSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTKVDFSIESLISKDMFQSNNSLAHPIFPLDSSAPSYYGQQHQQNPAIHNNISNGTVTHNSVDPLDGGLCQNLGMHLSSLSGFNEAGSQYPLTFSEDDLNTIVQMGFGQTDNRKTPIQFHNLNGTNQLPL*