AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0809920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0809920 MtrunA17_Chr5g0425711 95.251 379 18 0 1 379 1 379 0.0 756
Msa0809920 MtrunA17_Chr3g0115661 72.254 346 86 4 30 373 24 361 0.0 515
Msa0809920 MtrunA17_Chr8g0382441 65.373 335 110 3 44 376 32 362 1.34e-157 447
Msa0809920 MtrunA17_Chr4g0056481 52.410 332 136 2 68 377 57 388 1.24e-124 364
Msa0809920 MtrunA17_Chr4g0018441 54.878 328 126 2 72 377 59 386 6.00e-122 357
Msa0809920 MtrunA17_Chr3g0079281 53.191 329 128 3 69 374 62 387 3.72e-119 350
Msa0809920 MtrunA17_Chr3g0126491 51.568 287 128 1 97 372 69 355 7.45e-103 308
Msa0809920 MtrunA17_Chr8g0347141 48.780 287 134 3 97 371 25 310 3.13e-97 292
Msa0809920 MtrunA17_Chr4g0018781 42.045 88 50 1 88 174 21 108 1.46e-13 66.6
Msa0809920 MtrunA17_Chr4g0018791 48.387 62 31 1 254 314 2 63 8.65e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0809920 AT1G78090.1 60.000 385 127 6 1 373 1 370 4.79e-156 444
Msa0809920 AT5G10100.3 62.575 334 119 2 46 375 37 368 2.72e-151 432
Msa0809920 AT5G10100.1 62.575 334 119 2 46 375 48 379 3.27e-151 432
Msa0809920 AT5G65140.1 61.538 351 129 3 24 371 20 367 3.91e-151 431
Msa0809920 AT4G39770.1 63.863 321 111 2 56 374 30 347 1.13e-150 429
Msa0809920 AT2G22190.1 61.159 345 130 2 28 372 10 350 7.79e-150 427
Msa0809920 AT1G78090.2 60.377 371 120 6 1 359 1 356 9.64e-150 427
Msa0809920 AT1G35910.1 63.664 333 109 4 51 375 39 367 2.03e-149 427
Msa0809920 AT1G22210.1 63.462 312 104 3 69 373 9 317 2.40e-145 415
Msa0809920 AT4G39770.2 64.706 306 103 2 56 359 30 332 8.48e-145 414
Msa0809920 AT2G22190.2 61.747 332 123 2 28 359 10 337 9.53e-145 414
Msa0809920 AT5G10100.2 62.893 318 112 2 46 359 37 352 3.45e-144 413
Msa0809920 AT5G10100.4 57.784 334 115 3 46 375 48 359 5.54e-132 382
Msa0809920 AT5G65140.3 58.410 327 129 4 6 328 1 324 2.20e-129 375
Msa0809920 AT5G51460.2 55.452 321 126 4 69 372 62 382 1.21e-121 357
Msa0809920 AT5G51460.4 55.452 321 126 4 69 372 62 382 1.21e-121 357
Msa0809920 AT4G22590.1 54.180 323 129 3 71 374 50 372 1.01e-120 354
Msa0809920 AT5G51460.1 55.280 322 126 4 69 372 62 383 5.52e-120 353
Msa0809920 AT5G51460.5 55.280 322 126 4 69 372 62 383 5.52e-120 353
Msa0809920 AT5G51460.3 55.280 322 126 4 69 372 62 383 5.52e-120 353
Msa0809920 AT4G12430.1 54.037 322 135 2 68 376 44 365 2.26e-117 345
Msa0809920 AT5G65140.2 59.507 284 109 3 24 304 20 300 4.31e-113 333

Find 104 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCCCTTGTCCCATTTAA+TGG 0.107672 5_3:+37432428 None:intergenic
AAATTCGACCAACCATTAAA+TGG 0.184228 5_3:-37432440 Msa0809920:CDS
AACTTCAGTGTCTGAATTAA+TGG 0.186430 5_3:-37433971 Msa0809920:CDS
TTTATGCCTCATTTGCAATA+TGG 0.223415 5_3:-37431538 Msa0809920:three_prime_UTR
TTGACACCGACCCAAGAATT+TGG 0.244483 5_3:-37431761 Msa0809920:three_prime_UTR
GGCATCCCTTGTTTGAAAAT+AGG 0.253122 5_3:-37431720 Msa0809920:three_prime_UTR
TTACTCATGTAGGCTTTATC+TGG 0.261967 5_3:+37433468 None:intergenic
AAGCCATGGGATGGATATTA+AGG 0.269464 5_3:-37433131 Msa0809920:CDS
AGGAATCTATAAATGAGTTT+AGG 0.278275 5_3:-37431787 Msa0809920:three_prime_UTR
CCTTGTGTTAGCTTTAGTTT+TGG 0.279314 5_3:+37432477 None:intergenic
AATTCAGACACTGAAGTTCT+TGG 0.288315 5_3:+37433976 None:intergenic
TTAGTGCTTCTCCTATTTGT+TGG 0.289846 5_3:+37433106 None:intergenic
GGAATCTATAAATGAGTTTA+GGG 0.305631 5_3:-37431786 Msa0809920:three_prime_UTR
GTGACTTTCCCAACATATTC+TGG 0.318648 5_3:+37434061 None:intergenic
GAGAAAACGAAGTGTGTTCC+AGG 0.327309 5_3:-37432793 Msa0809920:CDS
TTATGCCTCATTTGCAATAT+GGG 0.331313 5_3:-37431537 Msa0809920:three_prime_UTR
CGCAATAGGGGCCAAGGGTG+TGG 0.335378 5_3:-37432037 Msa0809920:CDS
TAAAGCCTACATGAGTAAAA+AGG 0.339761 5_3:-37433463 Msa0809920:intron
CTACCCCTTGACCAAATTCT+TGG 0.346499 5_3:+37431750 None:intergenic
GGCTTACAGTCCAATGAGTT+TGG 0.362955 5_3:+37433791 None:intergenic
AAACAATCTCATTAAGCCTT+TGG 0.363708 5_3:-37433917 Msa0809920:CDS
TTATCTGGATCTGCTACAAT+TGG 0.368355 5_3:+37433483 None:intergenic
CAAATAATGTACAATACAAA+TGG 0.375691 5_3:-37433549 Msa0809920:CDS
AATGTATTTCCAATCTATAT+TGG 0.376405 5_3:-37432239 Msa0809920:CDS
CTTGAATTTCTTACCTCAGA+TGG 0.386100 5_3:+37431959 None:intergenic
TGTAGCTATTTAGCTTTGTA+AGG 0.388676 5_3:-37433177 Msa0809920:intron
GCTATTTAGCTTTGTAAGGT+TGG 0.390975 5_3:-37433173 Msa0809920:CDS
GATTGTGAATGAGAGGTTAA+TGG 0.392429 5_3:-37434034 Msa0809920:CDS
TTTCCCACAGCCATTGTTAG+TGG 0.400255 5_3:-37433313 Msa0809920:CDS
GAATTAATGGCTTTGTTTGG+TGG 0.404929 5_3:-37433958 Msa0809920:CDS
TTGCCAATTTCAACTTGAAA+AGG 0.409018 5_3:-37431446 Msa0809920:three_prime_UTR
TCTGAATTAATGGCTTTGTT+TGG 0.409233 5_3:-37433961 Msa0809920:CDS
CCCTTGTCCCATTTAATGGT+TGG 0.411248 5_3:+37432432 None:intergenic
AATTAATGGCTTTGTTTGGT+GGG 0.420794 5_3:-37433957 Msa0809920:CDS
TATTTAGAGTTGGGCACCAT+TGG 0.421897 5_3:-37432532 Msa0809920:intron
GGGTCAGGTTTATAAGATCT+TGG 0.424468 5_3:-37432818 Msa0809920:intron
TATCTGGATCTGCTACAATT+GGG 0.442252 5_3:+37433484 None:intergenic
AAGAAGAAGAACAAAGAGAG+AGG 0.442386 5_3:+37434156 None:intergenic
GCAATAGGGGCCAAGGGTGT+GGG 0.454198 5_3:-37432036 Msa0809920:CDS
ATATTAAGGGTCCAACAAAT+AGG 0.455858 5_3:-37433117 Msa0809920:CDS
CGATCGTCACCAATATAGAT+TGG 0.456578 5_3:+37432230 None:intergenic
AACCGATGAAGATGCTTTCA+AGG 0.459255 5_3:-37432207 Msa0809920:intron
TGGTCAAGGGGTAGTTCAAA+TGG 0.461231 5_3:-37431741 Msa0809920:three_prime_UTR
ATAGAGAAGAACAGAGAGAT+GGG 0.461260 5_3:+37434184 None:intergenic
TACCCCTTGACCAAATTCTT+GGG 0.470345 5_3:+37431751 None:intergenic
TCTTGGTAAAACATTAGAGT+TGG 0.472981 5_3:+37433993 None:intergenic
AAAATCGTGACCAAACTCAT+TGG 0.474132 5_3:-37433801 Msa0809920:CDS
TTGCAAAGTGTAAGAAGCAT+TGG 0.474961 5_3:+37431985 None:intergenic
GCTACGAACCTCATTGATCA+TGG 0.476130 5_3:+37432943 None:intergenic
GATAGAGAAGAACAGAGAGA+TGG 0.479405 5_3:+37434183 None:intergenic
ATGACTAACCAGAATATGTT+GGG 0.482279 5_3:-37434069 Msa0809920:CDS
AATTCGACCAACCATTAAAT+GGG 0.483720 5_3:-37432439 Msa0809920:CDS
TTATACTATGCTGGAAGCCA+TGG 0.484718 5_3:-37433145 Msa0809920:CDS
CCATTAAATGGGACAAGGGA+AGG 0.493371 5_3:-37432428 Msa0809920:CDS
AATGACTAACCAGAATATGT+TGG 0.502586 5_3:-37434070 Msa0809920:CDS
TTGGCTGAATTATACTATGC+TGG 0.505769 5_3:-37433154 Msa0809920:CDS
AAATAATGTACAATACAAAT+GGG 0.510120 5_3:-37433548 Msa0809920:CDS
TTAGATGAGAGTGACATTGA+AGG 0.514001 5_3:-37433350 Msa0809920:intron
AATGTCCCATATTGCAAATG+AGG 0.515183 5_3:+37431532 None:intergenic
GAAGTGTGTTCCAGGGGCTA+TGG 0.519970 5_3:-37432785 Msa0809920:CDS
AGCCATGGGATGGATATTAA+GGG 0.535930 5_3:-37433130 Msa0809920:CDS
AGAAGAAGAACAAAGAGAGA+GGG 0.538185 5_3:+37434157 None:intergenic
TACCTTGAAAGCATCTTCAT+CGG 0.538497 5_3:+37432205 None:intergenic
AACACAAGGGAGAAAAGTGT+TGG 0.542726 5_3:-37432463 Msa0809920:CDS
AGTAGGAGAAGAAGCTCTCA+TGG 0.543615 5_3:+37433843 None:intergenic
CTCACAAGTTGTAGAGAGCT+AGG 0.543818 5_3:-37431807 Msa0809920:exon
TTATACATTGAAACAAGAAA+AGG 0.544195 5_3:+37431619 None:intergenic
TTGAACATGTTCAAAGCAGA+AGG 0.546219 5_3:+37433573 None:intergenic
CACACGTTTGCATGCGCATG+CGG 0.547592 5_3:-37431579 Msa0809920:three_prime_UTR
GACCCTTAATATCCATCCCA+TGG 0.547681 5_3:+37433128 None:intergenic
GTGTGTTCCAGGGGCTATGG+TGG 0.549508 5_3:-37432782 Msa0809920:CDS
TCTTCCACTAACAATGGCTG+TGG 0.554269 5_3:+37433309 None:intergenic
ATACAAGAATCCCACACCCT+TGG 0.561032 5_3:+37432026 None:intergenic
ATCTGGATCTGCTACAATTG+GGG 0.562431 5_3:+37433485 None:intergenic
AAGCTTACTTGTTCAGCCAA+TGG 0.567677 5_3:+37432516 None:intergenic
CATTAAATGGGACAAGGGAA+GGG 0.571676 5_3:-37432427 Msa0809920:CDS
ACATGTTCAAAGCAGAAGGA+TGG 0.573560 5_3:+37433577 None:intergenic
TGATCATTATCATCTTCCAA+AGG 0.579315 5_3:+37433901 None:intergenic
ATGGGCAAGAATTCACTAGC+AGG 0.580507 5_3:+37432962 None:intergenic
GATTCGTGTCTGGTTCGAGT+AGG 0.581250 5_3:+37433826 None:intergenic
CTATGCTGGAAGCCATGGGA+TGG 0.581523 5_3:-37433140 Msa0809920:CDS
CCTTGACCAAATTCTTGGGT+CGG 0.585466 5_3:+37431755 None:intergenic
CCAAAACTAAAGCTAACACA+AGG 0.588195 5_3:-37432477 Msa0809920:CDS
CGACCCAAGAATTTGGTCAA+GGG 0.600225 5_3:-37431754 Msa0809920:three_prime_UTR
CTACGAACCTCATTGATCAT+GGG 0.600560 5_3:+37432944 None:intergenic
TCAGGTTTATAAGATCTTGG+TGG 0.601263 5_3:-37432815 Msa0809920:intron
TATACTATGCTGGAAGCCAT+GGG 0.609558 5_3:-37433144 Msa0809920:CDS
ACCAACCATTAAATGGGACA+AGG 0.627155 5_3:-37432433 Msa0809920:CDS
CACTTTGCAAGATCCATCTG+AGG 0.628755 5_3:-37431972 Msa0809920:intron
TAAGCATCTTCCACTAACAA+TGG 0.635138 5_3:+37433303 None:intergenic
AGAAAACGAAGTGTGTTCCA+GGG 0.637437 5_3:-37432792 Msa0809920:CDS
ATTTCAGGGTAATAATGATG+AGG 0.638286 5_3:-37432996 Msa0809920:intron
CTTCCACTAACAATGGCTGT+GGG 0.639958 5_3:+37433310 None:intergenic
GACCCAAGAATTTGGTCAAG+GGG 0.641032 5_3:-37431753 Msa0809920:three_prime_UTR
ATTCTTGCCCATGATCAATG+AGG 0.645083 5_3:-37432951 Msa0809920:intron
CCGACCCAAGAATTTGGTCA+AGG 0.645146 5_3:-37431755 Msa0809920:three_prime_UTR
TATTGTACTTAACGTACGTG+TGG 0.645388 5_3:-37431492 Msa0809920:three_prime_UTR
GAAGATGATAATGATCACAA+AGG 0.653543 5_3:-37433895 Msa0809920:CDS
CACGTGTGATTGTGAATGAG+AGG 0.660978 5_3:-37434041 Msa0809920:CDS
GAGCAACTAAAGTTAACGCG+TGG 0.664842 5_3:-37433873 Msa0809920:CDS
GAAAACGAAGTGTGTTCCAG+GGG 0.667596 5_3:-37432791 Msa0809920:CDS
CCAACCATTAAATGGGACAA+GGG 0.680428 5_3:-37432432 Msa0809920:CDS
CAAAACTAAAGCTAACACAA+GGG 0.690741 5_3:-37432476 Msa0809920:CDS
TAGTGGAAGATGCTTAGACA+AGG 0.695626 5_3:-37433296 Msa0809920:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAATAAATT+AGG + chr5_3:37432790-37432809 None:intergenic 0.0%
!!! TTTTATTTTATTTTTATATT+TGG - chr5_3:37432796-37432815 Msa0809920:CDS 0.0%
!!! TTTATTTTATTTTTATATTT+GGG - chr5_3:37432797-37432816 Msa0809920:CDS 0.0%
!! AATTAATTCCATTAATAAAT+TGG - chr5_3:37433297-37433316 Msa0809920:CDS 10.0%
!!! TAATTTTTATAAAGTTAGTA+AGG + chr5_3:37433467-37433486 None:intergenic 10.0%
!! AATAAAAATGTTAATATATG+TGG + chr5_3:37433505-37433524 None:intergenic 10.0%
!!! TTCATTTAAATTTTGTATAT+AGG - chr5_3:37433754-37433773 Msa0809920:intron 10.0%
!!! TTCCATAATTTTAATTTTTA+GGG - chr5_3:37433956-37433975 Msa0809920:CDS 10.0%
!! AAATAATGTACAATACAAAT+GGG - chr5_3:37432087-37432106 Msa0809920:intron 15.0%
!! ATTTCATCTATTATTATTTC+AGG - chr5_3:37432624-37432643 Msa0809920:intron 15.0%
!! TTTCATCTATTATTATTTCA+GGG - chr5_3:37432625-37432644 Msa0809920:intron 15.0%
!!! ATTTTGTTTTATTTAGAGTT+GGG - chr5_3:37433094-37433113 Msa0809920:intron 15.0%
!! TATTTGTACCAATTTATTAA+TGG + chr5_3:37433308-37433327 None:intergenic 15.0%
!! AATTTGGATATGAATAATAT+AGG - chr5_3:37433570-37433589 Msa0809920:CDS 15.0%
!!! TTTAAATTTTGTATATAGGT+TGG - chr5_3:37433758-37433777 Msa0809920:intron 15.0%
!!! GTTCCATAATTTTAATTTTT+AGG - chr5_3:37433955-37433974 Msa0809920:CDS 15.0%
!! GTTATGATTCTAAATTATGT+CGG - chr5_3:37431903-37431922 Msa0809920:intron 20.0%
!! CAAATAATGTACAATACAAA+TGG - chr5_3:37432086-37432105 Msa0809920:intron 20.0%
!! ATGGTGTAACTAAAAAAATT+TGG + chr5_3:37432739-37432758 None:intergenic 20.0%
!! AAATAAAATAAATTAGGCAC+AGG + chr5_3:37432784-37432803 None:intergenic 20.0%
!!! TTTATTTTTATATTTGGGTC+AGG - chr5_3:37432802-37432821 Msa0809920:CDS 20.0%
!!! TTTAAAGTATTTCCATACTT+AGG - chr5_3:37432963-37432982 Msa0809920:CDS 20.0%
!!! ATAACAAAGTTTCTAAAACA+TGG - chr5_3:37433067-37433086 Msa0809920:intron 20.0%
!!! CATTTTGTTTTATTTAGAGT+TGG - chr5_3:37433093-37433112 Msa0809920:intron 20.0%
!! TTAATGGAATTAATTCTCAA+AGG + chr5_3:37433292-37433311 None:intergenic 20.0%
!! AATGTATTTCCAATCTATAT+TGG - chr5_3:37433396-37433415 Msa0809920:intron 20.0%
!!! TATTTCCTATTTTCAAACAA+GGG + chr5_3:37433923-37433942 None:intergenic 20.0%
!! GTCCCTAAAAATTAAAATTA+TGG + chr5_3:37433961-37433980 None:intergenic 20.0%
!! AAAGAAAAAGAGAATCTATT+TGG + chr5_3:37433992-37434011 None:intergenic 20.0%
!! TTATACATTGAAACAAGAAA+AGG + chr5_3:37434019-37434038 None:intergenic 20.0%
!!! TTTTTGGTGTGTAAGTAATA+AGG + chr5_3:37431868-37431887 None:intergenic 25.0%
! GCAAGTTAGAATTATGATTA+CGG - chr5_3:37431980-37431999 Msa0809920:CDS 25.0%
! GTGTAACTAAAAAAATTTGG+TGG + chr5_3:37432736-37432755 None:intergenic 25.0%
! ATAAAACACGTTAATGATGA+TGG - chr5_3:37433011-37433030 Msa0809920:intron 25.0%
! TAAAACACGTTAATGATGAT+GGG - chr5_3:37433012-37433031 Msa0809920:intron 25.0%
! AGGAATCTATAAATGAGTTT+AGG - chr5_3:37433848-37433867 Msa0809920:CDS 25.0%
! GGAATCTATAAATGAGTTTA+GGG - chr5_3:37433849-37433868 Msa0809920:CDS 25.0%
!! CTATTTCCTATTTTCAAACA+AGG + chr5_3:37433924-37433943 None:intergenic 25.0%
AATGACTAACCAGAATATGT+TGG - chr5_3:37431565-37431584 Msa0809920:three_prime_UTR 30.0%
ATGACTAACCAGAATATGTT+GGG - chr5_3:37431566-37431585 Msa0809920:three_prime_UTR 30.0%
TCTTGGTAAAACATTAGAGT+TGG + chr5_3:37431645-37431664 None:intergenic 30.0%
AACTTCAGTGTCTGAATTAA+TGG - chr5_3:37431664-37431683 Msa0809920:three_prime_UTR 30.0%
!! TCTGAATTAATGGCTTTGTT+TGG - chr5_3:37431674-37431693 Msa0809920:three_prime_UTR 30.0%
!! AATTAATGGCTTTGTTTGGT+GGG - chr5_3:37431678-37431697 Msa0809920:three_prime_UTR 30.0%
!!! TAATGAGATTGTTTTTGTGC+TGG + chr5_3:37431712-37431731 None:intergenic 30.0%
AAACAATCTCATTAAGCCTT+TGG - chr5_3:37431718-37431737 Msa0809920:three_prime_UTR 30.0%
TGATCATTATCATCTTCCAA+AGG + chr5_3:37431737-37431756 None:intergenic 30.0%
! GAAGATGATAATGATCACAA+AGG - chr5_3:37431740-37431759 Msa0809920:three_prime_UTR 30.0%
!!! CTAGTCAAACAGTCTTTTTT+TGG + chr5_3:37431884-37431903 None:intergenic 30.0%
TGCTATACTACAGATAAATG+TGG + chr5_3:37431929-37431948 None:intergenic 30.0%
GTTAGAATTATGATTACGGT+TGG - chr5_3:37431984-37432003 Msa0809920:CDS 30.0%
! GTAGTTTTTCTTGACTATGA+TGG - chr5_3:37432119-37432138 Msa0809920:intron 30.0%
TAAAGCCTACATGAGTAAAA+AGG - chr5_3:37432172-37432191 Msa0809920:intron 30.0%
! ACAAACCTTTTTACTCATGT+AGG + chr5_3:37432180-37432199 None:intergenic 30.0%
! TTTTCACTAACGTTTGATTC+TGG - chr5_3:37432206-37432225 Msa0809920:intron 30.0%
!! TGTAGCTATTTAGCTTTGTA+AGG - chr5_3:37432458-37432477 Msa0809920:CDS 30.0%
ATATTAAGGGTCCAACAAAT+AGG - chr5_3:37432518-37432537 Msa0809920:CDS 30.0%
ATTTCAGGGTAATAATGATG+AGG - chr5_3:37432639-37432658 Msa0809920:intron 30.0%
!!! CTTGTGTTAGCTTTAGTTTT+GGG + chr5_3:37433160-37433179 None:intergenic 30.0%
CAAAACTAAAGCTAACACAA+GGG - chr5_3:37433159-37433178 Msa0809920:CDS 30.0%
AAATTCGACCAACCATTAAA+TGG - chr5_3:37433195-37433214 Msa0809920:intron 30.0%
AATTCGACCAACCATTAAAT+GGG - chr5_3:37433196-37433215 Msa0809920:intron 30.0%
! TAATATAGGTTTTGCGCAAT+AGG - chr5_3:37433584-37433603 Msa0809920:CDS 30.0%
! AATATAGGTTTTGCGCAATA+GGG - chr5_3:37433585-37433604 Msa0809920:CDS 30.0%
!! TATAGGTTGGACAATTTTTG+CGG - chr5_3:37433771-37433790 Msa0809920:intron 30.0%
TTTATGCCTCATTTGCAATA+TGG - chr5_3:37434097-37434116 Msa0809920:five_prime_UTR 30.0%
TTATGCCTCATTTGCAATAT+GGG - chr5_3:37434098-37434117 Msa0809920:five_prime_UTR 30.0%
TTGCCAATTTCAACTTGAAA+AGG - chr5_3:37434189-37434208 Msa0809920:five_prime_UTR 30.0%
ATAGAGAAGAACAGAGAGAT+GGG + chr5_3:37431454-37431473 None:intergenic 35.0%
AGAAGAAGAACAAAGAGAGA+GGG + chr5_3:37431481-37431500 None:intergenic 35.0%
AAGAAGAAGAACAAAGAGAG+AGG + chr5_3:37431482-37431501 None:intergenic 35.0%
GATTGTGAATGAGAGGTTAA+TGG - chr5_3:37431601-37431620 Msa0809920:three_prime_UTR 35.0%
AATTCAGACACTGAAGTTCT+TGG + chr5_3:37431662-37431681 None:intergenic 35.0%
!! GAATTAATGGCTTTGTTTGG+TGG - chr5_3:37431677-37431696 Msa0809920:three_prime_UTR 35.0%
AAAATCGTGACCAAACTCAT+TGG - chr5_3:37431834-37431853 Msa0809920:CDS 35.0%
TTGAACATGTTCAAAGCAGA+AGG + chr5_3:37432065-37432084 None:intergenic 35.0%
TATCTGGATCTGCTACAATT+GGG + chr5_3:37432154-37432173 None:intergenic 35.0%
TTATCTGGATCTGCTACAAT+TGG + chr5_3:37432155-37432174 None:intergenic 35.0%
! TTACTCATGTAGGCTTTATC+TGG + chr5_3:37432170-37432189 None:intergenic 35.0%
TTAGATGAGAGTGACATTGA+AGG - chr5_3:37432285-37432304 Msa0809920:intron 35.0%
TAAGCATCTTCCACTAACAA+TGG + chr5_3:37432335-37432354 None:intergenic 35.0%
!! GCTATTTAGCTTTGTAAGGT+TGG - chr5_3:37432462-37432481 Msa0809920:CDS 35.0%
TTGGCTGAATTATACTATGC+TGG - chr5_3:37432481-37432500 Msa0809920:CDS 35.0%
TTAGTGCTTCTCCTATTTGT+TGG + chr5_3:37432532-37432551 None:intergenic 35.0%
CTCTATCCAAATTATTGCGA+CGG - chr5_3:37432570-37432589 Msa0809920:intron 35.0%
TAATCTCCGTCGCAATAATT+TGG + chr5_3:37432579-37432598 None:intergenic 35.0%
TTAGTTACACCATTCCCATT+AGG - chr5_3:37432746-37432765 Msa0809920:CDS 35.0%
GGTAAAATCCCATACCTAAT+GGG + chr5_3:37432763-37432782 None:intergenic 35.0%
AGGTAAAATCCCATACCTAA+TGG + chr5_3:37432764-37432783 None:intergenic 35.0%
TCAGGTTTATAAGATCTTGG+TGG - chr5_3:37432820-37432839 Msa0809920:intron 35.0%
GTGTGTTTACTTCCTAAGTA+TGG + chr5_3:37432978-37432997 None:intergenic 35.0%
!!! CCTTGTGTTAGCTTTAGTTT+TGG + chr5_3:37433161-37433180 None:intergenic 35.0%
CCAAAACTAAAGCTAACACA+AGG - chr5_3:37433158-37433177 Msa0809920:CDS 35.0%
! GAATTTTTGCTAGAGTCACT+TGG - chr5_3:37433236-37433255 Msa0809920:intron 35.0%
!! TACCTTGAAAGCATCTTCAT+CGG + chr5_3:37433433-37433452 None:intergenic 35.0%
! GCTATGCTAACTTGTCAATT+TGG - chr5_3:37433554-37433573 Msa0809920:CDS 35.0%
! ATATAGGTTTTGCGCAATAG+GGG - chr5_3:37433586-37433605 Msa0809920:intron 35.0%
! TTGCAAAGTGTAAGAAGCAT+TGG + chr5_3:37433653-37433672 None:intergenic 35.0%
CTTGAATTTCTTACCTCAGA+TGG + chr5_3:37433679-37433698 None:intergenic 35.0%
AATGTCCCATATTGCAAATG+AGG + chr5_3:37434106-37434125 None:intergenic 35.0%
TATTGTACTTAACGTACGTG+TGG - chr5_3:37434143-37434162 Msa0809920:five_prime_UTR 35.0%
GATAGAGAAGAACAGAGAGA+TGG + chr5_3:37431455-37431474 None:intergenic 40.0%
GTGACTTTCCCAACATATTC+TGG + chr5_3:37431577-37431596 None:intergenic 40.0%
!! ACGATTTTCTGATTCGTGTC+TGG + chr5_3:37431822-37431841 None:intergenic 40.0%
ACAGACAAATGTGACTGATG+AGG - chr5_3:37431951-37431970 Msa0809920:intron 40.0%
ACATGTTCAAAGCAGAAGGA+TGG + chr5_3:37432061-37432080 None:intergenic 40.0%
ATCTGGATCTGCTACAATTG+GGG + chr5_3:37432153-37432172 None:intergenic 40.0%
TAGTGGAAGATGCTTAGACA+AGG - chr5_3:37432339-37432358 Msa0809920:intron 40.0%
TTATACTATGCTGGAAGCCA+TGG - chr5_3:37432490-37432509 Msa0809920:CDS 40.0%
TATACTATGCTGGAAGCCAT+GGG - chr5_3:37432491-37432510 Msa0809920:CDS 40.0%
AAGCCATGGGATGGATATTA+AGG - chr5_3:37432504-37432523 Msa0809920:CDS 40.0%
AGCCATGGGATGGATATTAA+GGG - chr5_3:37432505-37432524 Msa0809920:CDS 40.0%
ATTCTTGCCCATGATCAATG+AGG - chr5_3:37432684-37432703 Msa0809920:intron 40.0%
CTACGAACCTCATTGATCAT+GGG + chr5_3:37432694-37432713 None:intergenic 40.0%
TACACCATTCCCATTAGGTA+TGG - chr5_3:37432751-37432770 Msa0809920:CDS 40.0%
ACACCATTCCCATTAGGTAT+GGG - chr5_3:37432752-37432771 Msa0809920:CDS 40.0%
AATCCCATACCTAATGGGAA+TGG + chr5_3:37432758-37432777 None:intergenic 40.0%
GGGTCAGGTTTATAAGATCT+TGG - chr5_3:37432817-37432836 Msa0809920:intron 40.0%
AGAAAACGAAGTGTGTTCCA+GGG - chr5_3:37432843-37432862 Msa0809920:intron 40.0%
! TTTTCGCAACGTTGACGAAA+AGG - chr5_3:37432904-37432923 Msa0809920:intron 40.0%
CGTTGACGAAAAGGTAACAA+TGG - chr5_3:37432913-37432932 Msa0809920:intron 40.0%
! TATTTAGAGTTGGGCACCAT+TGG - chr5_3:37433103-37433122 Msa0809920:CDS 40.0%
AAGCTTACTTGTTCAGCCAA+TGG + chr5_3:37433122-37433141 None:intergenic 40.0%
! AACACAAGGGAGAAAAGTGT+TGG - chr5_3:37433172-37433191 Msa0809920:CDS 40.0%
ACCAACCATTAAATGGGACA+AGG - chr5_3:37433202-37433221 Msa0809920:intron 40.0%
CCAACCATTAAATGGGACAA+GGG - chr5_3:37433203-37433222 Msa0809920:intron 40.0%
CATTAAATGGGACAAGGGAA+GGG - chr5_3:37433208-37433227 Msa0809920:intron 40.0%
CGATCGTCACCAATATAGAT+TGG + chr5_3:37433408-37433427 None:intergenic 40.0%
AACCGATGAAGATGCTTTCA+AGG - chr5_3:37433428-37433447 Msa0809920:intron 40.0%
! TGGACAATTTTTGCGGCATT+TGG - chr5_3:37433778-37433797 Msa0809920:intron 40.0%
! ACAATTTTTGCGGCATTTGG+TGG - chr5_3:37433781-37433800 Msa0809920:intron 40.0%
TACCCCTTGACCAAATTCTT+GGG + chr5_3:37433887-37433906 None:intergenic 40.0%
! GGCATCCCTTGTTTGAAAAT+AGG - chr5_3:37433915-37433934 Msa0809920:CDS 40.0%
CACGTGTGATTGTGAATGAG+AGG - chr5_3:37431594-37431613 Msa0809920:three_prime_UTR 45.0%
!!! GCTTTGTTTGGTGGGCTTTT+AGG - chr5_3:37431686-37431705 Msa0809920:three_prime_UTR 45.0%
GAGCAACTAAAGTTAACGCG+TGG - chr5_3:37431762-37431781 Msa0809920:three_prime_UTR 45.0%
AGTAGGAGAAGAAGCTCTCA+TGG + chr5_3:37431795-37431814 None:intergenic 45.0%
GGCTTACAGTCCAATGAGTT+TGG + chr5_3:37431847-37431866 None:intergenic 45.0%
TTTCCCACAGCCATTGTTAG+TGG - chr5_3:37432322-37432341 Msa0809920:intron 45.0%
CTTCCACTAACAATGGCTGT+GGG + chr5_3:37432328-37432347 None:intergenic 45.0%
TCTTCCACTAACAATGGCTG+TGG + chr5_3:37432329-37432348 None:intergenic 45.0%
GACCCTTAATATCCATCCCA+TGG + chr5_3:37432510-37432529 None:intergenic 45.0%
ATGGGCAAGAATTCACTAGC+AGG + chr5_3:37432676-37432695 None:intergenic 45.0%
GCTACGAACCTCATTGATCA+TGG + chr5_3:37432695-37432714 None:intergenic 45.0%
GAGAAAACGAAGTGTGTTCC+AGG - chr5_3:37432842-37432861 Msa0809920:intron 45.0%
GAAAACGAAGTGTGTTCCAG+GGG - chr5_3:37432844-37432863 Msa0809920:intron 45.0%
! TTATTTTCCACCATAGCCCC+TGG + chr5_3:37432863-37432882 None:intergenic 45.0%
CCCTTGTCCCATTTAATGGT+TGG + chr5_3:37433206-37433225 None:intergenic 45.0%
CCTTCCCTTGTCCCATTTAA+TGG + chr5_3:37433210-37433229 None:intergenic 45.0%
CCATTAAATGGGACAAGGGA+AGG - chr5_3:37433207-37433226 Msa0809920:intron 45.0%
ATACAAGAATCCCACACCCT+TGG + chr5_3:37433612-37433631 None:intergenic 45.0%
CACTTTGCAAGATCCATCTG+AGG - chr5_3:37433663-37433682 Msa0809920:intron 45.0%
!! TTTTGCGGCATTTGGTGGAT+TGG - chr5_3:37433786-37433805 Msa0809920:intron 45.0%
CTCACAAGTTGTAGAGAGCT+AGG - chr5_3:37433828-37433847 Msa0809920:CDS 45.0%
TTGACACCGACCCAAGAATT+TGG - chr5_3:37433874-37433893 Msa0809920:CDS 45.0%
CCTTGACCAAATTCTTGGGT+CGG + chr5_3:37433883-37433902 None:intergenic 45.0%
CGACCCAAGAATTTGGTCAA+GGG - chr5_3:37433881-37433900 Msa0809920:CDS 45.0%
GACCCAAGAATTTGGTCAAG+GGG - chr5_3:37433882-37433901 Msa0809920:CDS 45.0%
CTACCCCTTGACCAAATTCT+TGG + chr5_3:37433888-37433907 None:intergenic 45.0%
TGGTCAAGGGGTAGTTCAAA+TGG - chr5_3:37433894-37433913 Msa0809920:CDS 45.0%
!!! TTTTTTCTATATAATTAATT+TGG - chr5_3:37432414-37432433 Msa0809920:CDS 5.0%
!!! TATTTTATTTTTTAATATCT+AGG - chr5_3:37433357-37433376 Msa0809920:intron 5.0%
! GATTCGTGTCTGGTTCGAGT+AGG + chr5_3:37431812-37431831 None:intergenic 50.0%
! TTTTGCGCAATAGGGGCCAA+GGG - chr5_3:37433593-37433612 Msa0809920:intron 50.0%
CCGACCCAAGAATTTGGTCA+AGG - chr5_3:37433880-37433899 Msa0809920:CDS 50.0%
CTATGCTGGAAGCCATGGGA+TGG - chr5_3:37432495-37432514 Msa0809920:CDS 55.0%
GAAGTGTGTTCCAGGGGCTA+TGG - chr5_3:37432850-37432869 Msa0809920:intron 55.0%
! GTTTTGCGCAATAGGGGCCA+AGG - chr5_3:37433592-37433611 Msa0809920:intron 55.0%
CACACGTTTGCATGCGCATG+CGG - chr5_3:37434056-37434075 Msa0809920:CDS 55.0%
GTGTGTTCCAGGGGCTATGG+TGG - chr5_3:37432853-37432872 Msa0809920:intron 60.0%
! GCAATAGGGGCCAAGGGTGT+GGG - chr5_3:37433599-37433618 Msa0809920:intron 60.0%
CGCAATAGGGGCCAAGGGTG+TGG - chr5_3:37433598-37433617 Msa0809920:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 37431445 37434212 37431445 ID=Msa0809920;Name=Msa0809920
chr5_3 mRNA 37431445 37434212 37431445 ID=Msa0809920-mRNA-1;Parent=Msa0809920;Name=Msa0809920-mRNA-1;_AED=0.15;_eAED=0.15;_QI=121|1|1|1|1|1|10|371|379
chr5_3 exon 37431445 37431881 37431445 ID=Msa0809920-mRNA-1:exon:11556;Parent=Msa0809920-mRNA-1
chr5_3 exon 37431973 37432065 37431973 ID=Msa0809920-mRNA-1:exon:11555;Parent=Msa0809920-mRNA-1
chr5_3 exon 37432208 37432278 37432208 ID=Msa0809920-mRNA-1:exon:11554;Parent=Msa0809920-mRNA-1
chr5_3 exon 37432400 37432547 37432400 ID=Msa0809920-mRNA-1:exon:11553;Parent=Msa0809920-mRNA-1
chr5_3 exon 37432732 37432833 37432732 ID=Msa0809920-mRNA-1:exon:11552;Parent=Msa0809920-mRNA-1
chr5_3 exon 37432952 37433011 37432952 ID=Msa0809920-mRNA-1:exon:11551;Parent=Msa0809920-mRNA-1
chr5_3 exon 37433102 37433194 37433102 ID=Msa0809920-mRNA-1:exon:11550;Parent=Msa0809920-mRNA-1
chr5_3 exon 37433297 37433368 37433297 ID=Msa0809920-mRNA-1:exon:11549;Parent=Msa0809920-mRNA-1
chr5_3 exon 37433464 37433604 37433464 ID=Msa0809920-mRNA-1:exon:11548;Parent=Msa0809920-mRNA-1
chr5_3 exon 37433798 37434212 37433798 ID=Msa0809920-mRNA-1:exon:11547;Parent=Msa0809920-mRNA-1
chr5_3 five_prime_UTR 37434092 37434212 37434092 ID=Msa0809920-mRNA-1:five_prime_utr;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37433798 37434091 37433798 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37433464 37433604 37433464 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37433297 37433368 37433297 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37433102 37433194 37433102 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37432952 37433011 37432952 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37432732 37432833 37432732 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37432400 37432547 37432400 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37432208 37432278 37432208 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37431973 37432065 37431973 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 CDS 37431816 37431881 37431816 ID=Msa0809920-mRNA-1:cds;Parent=Msa0809920-mRNA-1
chr5_3 three_prime_UTR 37431445 37431815 37431445 ID=Msa0809920-mRNA-1:three_prime_utr;Parent=Msa0809920-mRNA-1
Gene Sequence

>Msa0809920

ATGACTAACCAGAATATGTTGGGAAAGTCACGTGTGATTGTGAATGAGAGGTTAATGGAGTTAGCAATGTCTATTTCCAACTCTAATGTTTTACCAAGAACTTCAGTGTCTGAATTAATGGCTTTGTTTGGTGGGCTTTTAGGCCAGCACAAAAACAATCTCATTAAGCCTTTGGAAGATGATAATGATCACAAAGGAGCAACTAAAGTTAACGCGTGGATCGATTCCATGAGAGCTTCTTCTCCTACTCGAACCAGACACGAATCAGAAAATCGTGACCAAACTCATTGGACTCTTTTCCATCCTTCTGCTTTGAACATGTTCAATCAAATAATGTACAATACAAATGGGAAACAGATTGTAGTTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTAGCAGATCCAGATAAAGCCTACATGAGTAAAAAGATGAGAGTGACATTGAAGGACATAGCAAGACATTTTCCCACAGCCATTGTTAGTGGAAGATGCTTAGACAAGCTATTTAGCTTTGTAAGGTTGGCTGAATTATACTATGCTGGAAGCCATGGGATGGATATTAAGGGTCCAACAAATAGGAGAAGCACTAAAAAAGGTAATAATGATGAGGTACTTTTGCAGCCTGCTAGTGAATTCTTGCCCATGATCAATGAGGTTTATAAGATCTTGGTGGAGAAAACGAAGTGTGTTCCAGGGGCTATGGTGGAAAATAACAAATTTTGTTTGTCTGTACATTTTCGCAACGTTGACGAAAAGAGTTGGGCACCATTGGCTGAACAAGTAAGCTTAGTGCTGAATGATTACCCAAAACTAAAGCTAACACAAGGGAGAAAAGTGTTGGAAATTCGACCAACCATTAAATGGGACAAGGGAAGGGCTCTTGAATTTTTGCTAGAGTCACTTGGATTTGCAAATTCTAAGAATGTATTTCCAATCTATATTGGTGACGATCGAACCGATGAAGATGCTTTCAAGGTTTTGCGCAATAGGGGCCAAGGGTGTGGGATTCTTGTATCTAAAATTTCAAAAGAAACCAATGCTTCTTACACTTTGCAAGATCCATCTGAGGTTGGACAATTTTTGCGGCATTTGGTGGATTGGAAAAGAACAAGTTCTCGTTCTCACAAGTTGTAG

Protein sequence

>Msa0809920

MTNQNMLGKSRVIVNERLMELAMSISNSNVLPRTSVSELMALFGGLLGQHKNNLIKPLEDDNDHKGATKVNAWIDSMRASSPTRTRHESENRDQTHWTLFHPSALNMFNQIMYNTNGKQIVVFLDYDGTLSPIVADPDKAYMSKKMRVTLKDIARHFPTAIVSGRCLDKLFSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNNDEVLLQPASEFLPMINEVYKILVEKTKCVPGAMVENNKFCLSVHFRNVDEKSWAPLAEQVSLVLNDYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGFANSKNVFPIYIGDDRTDEDAFKVLRNRGQGCGILVSKISKETNASYTLQDPSEVGQFLRHLVDWKRTSSRSHKL*