AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0390160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390160 MtrunA17_Chr1g0177281 96.372 441 12 2 1 441 1 437 0.0 864
Msa0390160 MtrunA17_Chr1g0177261 96.145 441 13 2 1 441 1 437 0.0 864
Msa0390160 MtrunA17_Chr1g0177271 95.692 441 15 2 1 441 1 437 0.0 856
Msa0390160 MtrunA17_Chr7g0267501 65.455 440 128 7 1 438 1 418 0.0 554
Msa0390160 MtrunA17_Chr2g0322021 54.713 435 163 4 4 438 3 403 1.54e-153 441
Msa0390160 MtrunA17_Chr1g0177301 40.972 432 215 8 4 430 3 399 2.80e-105 318
Msa0390160 MtrunA17_Chr4g0025501 37.188 441 238 8 4 437 3 411 7.98e-93 286
Msa0390160 MtrunA17_Chr3g0110121 33.700 454 233 13 3 437 32 436 9.38e-61 204
Msa0390160 MtrunA17_Chr5g0434171 33.716 436 240 15 4 429 32 428 1.37e-55 190
Msa0390160 MtrunA17_Chr5g0420471 32.333 433 240 13 2 418 20 415 8.19e-53 183
Msa0390160 MtrunA17_Chr6g0479261 31.481 432 245 12 2 418 20 415 2.07e-52 182
Msa0390160 MtrunA17_Chr4g0044631 31.308 428 247 11 1 423 8 393 6.87e-46 164
Msa0390160 MtrunA17_Chr8g0384041 28.054 442 272 12 5 431 8 418 8.88e-34 131
Msa0390160 MtrunA17_Chr3g0129811 27.991 443 269 12 5 431 81 489 3.37e-30 122
Msa0390160 MtrunA17_Chr4g0031431 25.408 429 262 13 11 430 259 638 5.44e-28 117
Msa0390160 MtrunA17_Chr7g0237931 26.961 408 254 13 11 418 241 604 2.02e-26 112
Msa0390160 MtrunA17_Chr4g0044411 28.213 319 167 9 11 315 277 547 4.66e-26 111
Msa0390160 MtrunA17_Chr1g0199321 29.326 341 180 12 11 339 251 542 9.36e-26 110
Msa0390160 MtrunA17_Chr5g0400971 26.366 421 262 9 6 426 66 438 1.17e-25 108
Msa0390160 MtrunA17_Chr2g0284461 28.261 322 166 11 11 313 296 571 4.58e-24 105
Msa0390160 MtrunA17_Chr7g0248251 30.576 278 166 10 11 274 278 542 1.71e-23 103
Msa0390160 MtrunA17_Chr5g0437411 26.667 360 187 13 11 342 297 607 3.32e-22 99.8
Msa0390160 MtrunA17_Chr4g0059201 27.791 421 249 18 11 418 323 701 4.21e-21 96.3
Msa0390160 MtrunA17_Chr3g0122721 26.115 471 277 19 13 441 286 727 8.58e-20 92.4
Msa0390160 MtrunA17_Chr5g0413681 27.371 369 233 13 11 375 284 621 2.03e-19 90.9
Msa0390160 MtrunA17_Chr8g0377151 27.716 451 250 22 13 418 288 707 5.79e-18 86.7
Msa0390160 MtrunA17_Chr1g0152291 26.636 428 260 14 5 426 42 421 1.62e-17 84.3
Msa0390160 MtrunA17_Chr4g0013091 34.091 176 82 7 2 156 306 468 3.81e-17 84.0
Msa0390160 MtrunA17_Chr7g0261371 45.679 81 37 2 5 85 239 312 2.15e-16 81.6
Msa0390160 MtrunA17_Chr7g0234671 42.500 80 39 2 1 80 72 144 6.73e-16 79.7
Msa0390160 MtrunA17_Chr1g0183781 45.455 77 35 2 5 81 239 308 7.57e-16 80.1
Msa0390160 MtrunA17_Chr7g0275081 45.745 94 40 4 11 104 82 164 8.61e-16 79.3
Msa0390160 MtrunA17_Chr4g0048811 35.220 159 87 4 11 169 9 151 1.62e-15 77.4
Msa0390160 MtrunA17_Chr3g0117851 24.533 375 239 11 11 374 279 620 8.30e-15 76.6
Msa0390160 MtrunA17_Chr8g0373031 44.086 93 39 4 5 95 271 352 1.27e-14 76.3
Msa0390160 MtrunA17_Chr3g0144071 26.512 215 116 8 11 207 34 224 1.71e-14 75.9
Msa0390160 MtrunA17_Chr2g0280671 25.786 318 192 8 13 330 21 294 1.75e-14 74.7
Msa0390160 MtrunA17_Chr5g0404311 43.878 98 40 6 1 95 265 350 9.29e-14 73.6
Msa0390160 MtrunA17_Chr8g0390311 39.326 89 40 3 11 99 399 473 4.40e-13 71.6
Msa0390160 MtrunA17_Chr3g0106931 41.667 84 42 2 2 85 228 304 4.86e-13 71.2
Msa0390160 MtrunA17_Chr1g0196911 43.243 74 36 2 11 84 510 577 1.26e-12 70.5
Msa0390160 MtrunA17_Chr1g0189811 38.462 91 45 4 5 95 61 140 1.75e-12 68.9
Msa0390160 MtrunA17_Chr7g0275961 41.667 84 42 2 2 85 250 326 4.90e-12 68.2
Msa0390160 MtrunA17_Chr2g0328101 37.500 80 43 2 1 80 734 806 6.32e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390160 AT3G52450.1 54.279 444 187 6 1 438 1 434 1.21e-159 458
Msa0390160 AT2G35930.1 51.131 442 175 5 1 438 6 410 1.49e-156 449
Msa0390160 AT3G11840.1 34.755 469 240 9 3 435 6 444 9.49e-78 249
Msa0390160 AT3G19380.1 33.871 434 235 10 1 423 8 400 7.79e-52 180
Msa0390160 AT5G37490.1 30.415 434 255 14 4 429 28 422 1.72e-48 172
Msa0390160 AT1G49780.1 31.603 443 256 11 1 432 8 414 8.21e-45 161
Msa0390160 AT1G66160.1 30.211 427 239 15 4 421 30 406 1.03e-43 159
Msa0390160 AT1G66160.2 27.635 427 234 16 4 421 30 390 6.26e-31 123
Msa0390160 AT1G23030.1 26.555 418 249 14 11 422 245 610 4.16e-29 120
Msa0390160 AT5G09800.1 28.702 439 253 15 10 431 14 409 6.13e-29 117
Msa0390160 AT2G28830.1 28.369 423 262 18 2 421 178 562 8.55e-29 119
Msa0390160 AT3G18710.1 26.862 443 271 12 5 431 10 415 3.28e-27 113
Msa0390160 AT5G64660.1 26.622 447 274 14 5 431 8 420 2.41e-25 107
Msa0390160 AT1G71020.2 26.995 426 246 14 11 422 99 473 2.46e-25 108
Msa0390160 AT5G42340.1 29.730 296 165 8 11 306 294 546 2.80e-25 109
Msa0390160 AT1G71020.1 26.995 426 246 14 11 422 247 621 3.64e-25 108
Msa0390160 AT3G46510.1 25.459 436 253 15 2 421 250 629 1.31e-24 107
Msa0390160 AT3G54850.1 29.355 310 184 12 7 316 248 522 1.37e-24 107
Msa0390160 AT5G65920.1 24.823 423 266 10 6 426 59 431 1.40e-22 100
Msa0390160 AT5G65920.2 24.823 423 266 10 6 426 59 431 1.40e-22 100
Msa0390160 AT3G49810.1 24.764 424 271 9 6 429 63 438 9.79e-22 97.4
Msa0390160 AT1G67530.2 26.889 450 262 13 13 418 278 704 2.28e-21 97.4
Msa0390160 AT1G67530.1 26.889 450 262 13 13 418 278 704 2.28e-21 97.4
Msa0390160 AT1G67530.4 26.889 450 262 13 13 418 278 704 2.28e-21 97.4
Msa0390160 AT1G29340.1 26.935 323 180 10 5 313 303 583 3.91e-20 93.6
Msa0390160 AT5G01830.1 26.518 313 178 10 4 308 271 539 1.44e-19 92.0
Msa0390160 AT1G24330.1 25.785 446 268 18 13 418 281 703 2.78e-18 88.2
Msa0390160 AT1G24330.2 25.785 446 268 18 13 418 281 703 2.78e-18 88.2
Msa0390160 AT1G67530.3 48.352 91 35 4 13 103 278 356 1.69e-17 85.1
Msa0390160 AT1G27910.1 43.810 105 48 4 13 117 285 378 3.17e-17 84.7
Msa0390160 AT1G10560.1 25.316 316 181 11 11 313 292 565 2.08e-16 82.0
Msa0390160 AT4G21350.1 25.749 334 197 9 11 342 9 293 4.40e-16 80.1
Msa0390160 AT3G02840.1 24.355 349 219 10 83 417 34 351 7.28e-15 76.3
Msa0390160 AT3G54790.2 43.750 80 38 2 5 84 200 272 1.48e-14 76.6
Msa0390160 AT3G54790.3 43.750 80 38 2 5 84 236 308 1.89e-14 76.3
Msa0390160 AT3G54790.1 43.750 80 38 2 5 84 236 308 1.89e-14 76.3
Msa0390160 AT3G07360.1 48.000 75 32 2 11 85 78 145 2.11e-14 75.5
Msa0390160 AT2G23140.2 38.776 98 49 3 11 108 234 320 2.14e-13 72.8
Msa0390160 AT2G23140.4 38.776 98 49 3 11 108 234 320 2.14e-13 72.8
Msa0390160 AT2G23140.1 38.776 98 49 3 11 108 237 323 2.15e-13 72.8
Msa0390160 AT2G23140.3 38.776 98 49 3 11 108 45 131 2.22e-13 72.8
Msa0390160 AT2G23140.5 38.776 98 49 3 11 108 45 131 2.22e-13 72.8
Msa0390160 AT1G60190.1 23.889 360 209 13 13 354 284 596 1.32e-12 70.5
Msa0390160 AT1G01660.2 39.474 76 39 2 10 85 501 569 1.62e-12 69.7
Msa0390160 AT1G01660.1 39.474 76 39 2 10 85 500 568 1.68e-12 69.7
Msa0390160 AT2G45920.1 40.244 82 42 2 6 87 324 398 8.97e-12 67.0
Msa0390160 AT1G01680.1 40.260 77 39 2 11 87 237 306 1.85e-11 65.5
Msa0390160 AT5G18340.1 26.984 315 185 12 5 311 72 349 2.14e-11 66.2
Msa0390160 AT5G67340.1 24.118 340 205 9 5 313 238 555 3.96e-11 65.9
Msa0390160 AT5G67340.2 24.118 340 205 9 5 313 238 555 3.96e-11 65.9

Find 46 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGCTTTCTTTGATATC+TGG 0.244295 3_2:-800999 None:intergenic
TCAAGTTGATAGTGGAAATA+AGG 0.246468 3_2:+801380 Msa0390160:CDS
TTCATGAGTTGTAGTGAAAT+AGG 0.280796 3_2:-800220 None:intergenic
TGCACCATGAATTCTTCTTA+TGG 0.309841 3_2:+800421 Msa0390160:CDS
CTAATTCAACTCGTCGAATT+CGG 0.319727 3_2:+801039 Msa0390160:CDS
TATGAAGCAAGCAAATTAAA+AGG 0.320835 3_2:-801468 None:intergenic
TTTAGATTGGCTAGCTTTGT+TGG 0.343021 3_2:-800937 None:intergenic
AAAGCCATGTGAGATGATTT+TGG 0.361012 3_2:+801137 Msa0390160:CDS
CTTCAAGAAATGTTACGAAT+TGG 0.376113 3_2:+801330 Msa0390160:CDS
AACTCCATAAGAAGAATTCA+TGG 0.378719 3_2:-800425 None:intergenic
TTAAATTGCATTCAAAGTCT+TGG 0.383883 3_2:+801427 Msa0390160:CDS
ATGCCTGTTGAGACAGTAAC+TGG 0.387709 3_2:-800247 None:intergenic
ATTAATGAGATTATTGCAAA+AGG 0.406969 3_2:+800852 Msa0390160:CDS
AGAGTAAAAGCAATTGAATC+AGG 0.420580 3_2:+801069 Msa0390160:CDS
TGTTGTTGCAAAGCTTTGTT+TGG 0.427050 3_2:+801353 Msa0390160:CDS
TCATGAGTTGTAGTGAAATA+GGG 0.428583 3_2:-800219 None:intergenic
AAGAATCAGAAGCTTCTTTG+AGG 0.432362 3_2:-800501 None:intergenic
TTTGATGATGATGATGTTGA+AGG 0.466030 3_2:+800706 Msa0390160:CDS
GATCCAGTTACTGTCTCAAC+AGG 0.466859 3_2:+800244 Msa0390160:CDS
AATTCATGGTGCACCATGCT+TGG 0.475436 3_2:-800411 None:intergenic
TTAATGAGATTATTGCAAAA+GGG 0.505237 3_2:+800853 Msa0390160:CDS
TTGGTTCTTCAAGTTGATAG+TGG 0.510674 3_2:+801372 Msa0390160:CDS
CCGACGATTTGTTTCGCTCT+CGG 0.515538 3_2:-800578 None:intergenic
AGTCTACGAAGAGTGTGGTT+TGG 0.516469 3_2:-800385 None:intergenic
ATGTTATGTCAATGTGCTGA+TGG 0.528834 3_2:+801171 Msa0390160:CDS
ATTCTTCTTATGGAGTTGAA+AGG 0.542323 3_2:+800431 Msa0390160:CDS
AGGGTTTGGATAAGTAAATG+AGG 0.542957 3_2:-800532 None:intergenic
GAACTCTTAAGCCATGGATG+TGG 0.556866 3_2:+801201 Msa0390160:CDS
ATAAGGCAAAGGAGAAAGCA+AGG 0.557452 3_2:+801397 Msa0390160:CDS
CTGATAATTGAAGATTGTAA+AGG 0.558747 3_2:-800777 None:intergenic
AGATTTGAACTCTTAAGCCA+TGG 0.566041 3_2:+801195 Msa0390160:CDS
TTCGATGCTTTCTCTGTCGT+AGG 0.572900 3_2:-800272 None:intergenic
TATTTCACTACAACTCATGA+AGG 0.582520 3_2:+800222 Msa0390160:CDS
TGATAGTGGAAATAAGGCAA+AGG 0.584798 3_2:+801386 Msa0390160:CDS
TGCTAAGAACTCGACTGCAC+CGG 0.586369 3_2:-800614 None:intergenic
CTTGCTTCATACCCAACAAG+TGG 0.596722 3_2:+801480 Msa0390160:CDS
AATCTTCAATTATCAGAACA+AGG 0.603602 3_2:+800784 Msa0390160:CDS
CAATAGCTAAACCACATCCA+TGG 0.618916 3_2:-801212 None:intergenic
TTCGTAGACTCATCCAAGCA+TGG 0.622209 3_2:+800398 Msa0390160:CDS
CGTCGGTGTATCGAATCAGC+CGG 0.622512 3_2:+800595 Msa0390160:CDS
TAAGGCAAAGGAGAAAGCAA+GGG 0.629025 3_2:+801398 Msa0390160:CDS
GGATGAGTCTACGAAGAGTG+TGG 0.646535 3_2:-800390 None:intergenic
TTGCTTCATACCCAACAAGT+GGG 0.652979 3_2:+801481 Msa0390160:CDS
AGCACCAAAATCATCTCACA+TGG 0.654659 3_2:-801141 None:intergenic
CCGAGAGCGAAACAAATCGT+CGG 0.679598 3_2:+800578 Msa0390160:CDS
TGGCTAATGATAGAGCTGTG+AGG 0.767301 3_2:+801265 Msa0390160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATGAGATTATTGCAAA+AGG + chr3_2:800852-800871 Msa0390160:CDS 20.0%
!! TTAATGAGATTATTGCAAAA+GGG + chr3_2:800853-800872 Msa0390160:CDS 20.0%
!! ATTAATGAGATTATTGCAAA+AGG + chr3_2:800852-800871 Msa0390160:CDS 20.0%
!! TTAATGAGATTATTGCAAAA+GGG + chr3_2:800853-800872 Msa0390160:CDS 20.0%
!!! GATTGTTTTGAGCTTTTTTA+GGG - chr3_2:800554-800573 None:intergenic 25.0%
!!! TTTGCTTTTGACTTCAAAAT+AGG + chr3_2:800730-800749 Msa0390160:CDS 25.0%
! CTGATAATTGAAGATTGTAA+AGG - chr3_2:800780-800799 None:intergenic 25.0%
! AATCTTCAATTATCAGAACA+AGG + chr3_2:800784-800803 Msa0390160:CDS 25.0%
! ACTCTCTTAAACTTCAAAAA+TGG + chr3_2:800814-800833 Msa0390160:CDS 25.0%
!! TTGTTTCAAAGAAGATTTTG+AGG + chr3_2:801232-801251 Msa0390160:CDS 25.0%
!! TGTTTCAAAGAAGATTTTGA+GGG + chr3_2:801233-801252 Msa0390160:CDS 25.0%
! TTAAATTGCATTCAAAGTCT+TGG + chr3_2:801427-801446 Msa0390160:CDS 25.0%
! TATGAAGCAAGCAAATTAAA+AGG - chr3_2:801471-801490 None:intergenic 25.0%
!!! GATTGTTTTGAGCTTTTTTA+GGG - chr3_2:800554-800573 None:intergenic 25.0%
!!! TTTGCTTTTGACTTCAAAAT+AGG + chr3_2:800730-800749 Msa0390160:CDS 25.0%
! CTGATAATTGAAGATTGTAA+AGG - chr3_2:800780-800799 None:intergenic 25.0%
! AATCTTCAATTATCAGAACA+AGG + chr3_2:800784-800803 Msa0390160:CDS 25.0%
! ACTCTCTTAAACTTCAAAAA+TGG + chr3_2:800814-800833 Msa0390160:CDS 25.0%
!! TTGTTTCAAAGAAGATTTTG+AGG + chr3_2:801232-801251 Msa0390160:CDS 25.0%
!! TGTTTCAAAGAAGATTTTGA+GGG + chr3_2:801233-801252 Msa0390160:CDS 25.0%
! TTAAATTGCATTCAAAGTCT+TGG + chr3_2:801427-801446 Msa0390160:CDS 25.0%
! TATGAAGCAAGCAAATTAAA+AGG - chr3_2:801471-801490 None:intergenic 25.0%
GAAATAGGGCAAAGAAAAAA+TGG - chr3_2:800208-800227 None:intergenic 30.0%
TCATGAGTTGTAGTGAAATA+GGG - chr3_2:800222-800241 None:intergenic 30.0%
TTCATGAGTTGTAGTGAAAT+AGG - chr3_2:800223-800242 None:intergenic 30.0%
TATTTCACTACAACTCATGA+AGG + chr3_2:800222-800241 Msa0390160:CDS 30.0%
AACTCCATAAGAAGAATTCA+TGG - chr3_2:800428-800447 None:intergenic 30.0%
ATTCTTCTTATGGAGTTGAA+AGG + chr3_2:800431-800450 Msa0390160:CDS 30.0%
!! TTTGAGGAGTTTTTCAATGA+GGG - chr3_2:800488-800507 None:intergenic 30.0%
!!! TTTTGAGCTTTTTTAGGGTT+TGG - chr3_2:800549-800568 None:intergenic 30.0%
!!! CGATTGTTTTGAGCTTTTTT+AGG - chr3_2:800555-800574 None:intergenic 30.0%
!! TTTGATGATGATGATGTTGA+AGG + chr3_2:800706-800725 Msa0390160:CDS 30.0%
TTGATGCTTTCTTTGATATC+TGG - chr3_2:801002-801021 None:intergenic 30.0%
AGAGTAAAAGCAATTGAATC+AGG + chr3_2:801069-801088 Msa0390160:CDS 30.0%
CTTCAAGAAATGTTACGAAT+TGG + chr3_2:801330-801349 Msa0390160:CDS 30.0%
!! TCAAGTTGATAGTGGAAATA+AGG + chr3_2:801380-801399 Msa0390160:CDS 30.0%
GAAATAGGGCAAAGAAAAAA+TGG - chr3_2:800208-800227 None:intergenic 30.0%
TCATGAGTTGTAGTGAAATA+GGG - chr3_2:800222-800241 None:intergenic 30.0%
TTCATGAGTTGTAGTGAAAT+AGG - chr3_2:800223-800242 None:intergenic 30.0%
TATTTCACTACAACTCATGA+AGG + chr3_2:800222-800241 Msa0390160:CDS 30.0%
AACTCCATAAGAAGAATTCA+TGG - chr3_2:800428-800447 None:intergenic 30.0%
ATTCTTCTTATGGAGTTGAA+AGG + chr3_2:800431-800450 Msa0390160:CDS 30.0%
!! TTTGAGGAGTTTTTCAATGA+GGG - chr3_2:800488-800507 None:intergenic 30.0%
!!! TTTTGAGCTTTTTTAGGGTT+TGG - chr3_2:800549-800568 None:intergenic 30.0%
!!! CGATTGTTTTGAGCTTTTTT+AGG - chr3_2:800555-800574 None:intergenic 30.0%
!! TTTGATGATGATGATGTTGA+AGG + chr3_2:800706-800725 Msa0390160:CDS 30.0%
TTGATGCTTTCTTTGATATC+TGG - chr3_2:801002-801021 None:intergenic 30.0%
AGAGTAAAAGCAATTGAATC+AGG + chr3_2:801069-801088 Msa0390160:CDS 30.0%
CTTCAAGAAATGTTACGAAT+TGG + chr3_2:801330-801349 Msa0390160:CDS 30.0%
!! TCAAGTTGATAGTGGAAATA+AGG + chr3_2:801380-801399 Msa0390160:CDS 30.0%
!! ACAGAGAAAGCATCGAAAAA+TGG + chr3_2:800278-800297 Msa0390160:CDS 35.0%
! CGAAAAATGGCTCTTTTCAT+CGG + chr3_2:800291-800310 Msa0390160:CDS 35.0%
TGCACCATGAATTCTTCTTA+TGG + chr3_2:800421-800440 Msa0390160:CDS 35.0%
!!! GTTTTTGTTGTTGGAGGTTT+TGG - chr3_2:800466-800485 None:intergenic 35.0%
!! TCAATGAGGGTTTTTGTTGT+TGG - chr3_2:800475-800494 None:intergenic 35.0%
!! CTTTGAGGAGTTTTTCAATG+AGG - chr3_2:800489-800508 None:intergenic 35.0%
AAGAATCAGAAGCTTCTTTG+AGG - chr3_2:800504-800523 None:intergenic 35.0%
AGGGTTTGGATAAGTAAATG+AGG - chr3_2:800535-800554 None:intergenic 35.0%
!! TTTAGATTGGCTAGCTTTGT+TGG - chr3_2:800940-800959 None:intergenic 35.0%
GAAAAACTCGGTCTTTAGAT+TGG - chr3_2:800953-800972 None:intergenic 35.0%
AACTAACTCGACGAAAAACT+CGG - chr3_2:800965-800984 None:intergenic 35.0%
CTAATTCAACTCGTCGAATT+CGG + chr3_2:801039-801058 Msa0390160:CDS 35.0%
! AAAGCCATGTGAGATGATTT+TGG + chr3_2:801137-801156 Msa0390160:CDS 35.0%
!!! TGAGATGATTTTGGTGCTTT+TGG + chr3_2:801146-801165 Msa0390160:CDS 35.0%
ATGTTATGTCAATGTGCTGA+TGG + chr3_2:801171-801190 Msa0390160:CDS 35.0%
AGATTTGAACTCTTAAGCCA+TGG + chr3_2:801195-801214 Msa0390160:CDS 35.0%
!! GATTTTGAGGGTTTCAACAA+TGG + chr3_2:801245-801264 Msa0390160:CDS 35.0%
!! TGTTGTTGCAAAGCTTTGTT+TGG + chr3_2:801353-801372 Msa0390160:CDS 35.0%
!! TTGGTTCTTCAAGTTGATAG+TGG + chr3_2:801372-801391 Msa0390160:CDS 35.0%
!! TGATAGTGGAAATAAGGCAA+AGG + chr3_2:801386-801405 Msa0390160:CDS 35.0%
!! ACAGAGAAAGCATCGAAAAA+TGG + chr3_2:800278-800297 Msa0390160:CDS 35.0%
! CGAAAAATGGCTCTTTTCAT+CGG + chr3_2:800291-800310 Msa0390160:CDS 35.0%
TGCACCATGAATTCTTCTTA+TGG + chr3_2:800421-800440 Msa0390160:CDS 35.0%
!!! GTTTTTGTTGTTGGAGGTTT+TGG - chr3_2:800466-800485 None:intergenic 35.0%
!! TCAATGAGGGTTTTTGTTGT+TGG - chr3_2:800475-800494 None:intergenic 35.0%
!! CTTTGAGGAGTTTTTCAATG+AGG - chr3_2:800489-800508 None:intergenic 35.0%
AAGAATCAGAAGCTTCTTTG+AGG - chr3_2:800504-800523 None:intergenic 35.0%
AGGGTTTGGATAAGTAAATG+AGG - chr3_2:800535-800554 None:intergenic 35.0%
!! TTTAGATTGGCTAGCTTTGT+TGG - chr3_2:800940-800959 None:intergenic 35.0%
GAAAAACTCGGTCTTTAGAT+TGG - chr3_2:800953-800972 None:intergenic 35.0%
AACTAACTCGACGAAAAACT+CGG - chr3_2:800965-800984 None:intergenic 35.0%
CTAATTCAACTCGTCGAATT+CGG + chr3_2:801039-801058 Msa0390160:CDS 35.0%
! AAAGCCATGTGAGATGATTT+TGG + chr3_2:801137-801156 Msa0390160:CDS 35.0%
!!! TGAGATGATTTTGGTGCTTT+TGG + chr3_2:801146-801165 Msa0390160:CDS 35.0%
ATGTTATGTCAATGTGCTGA+TGG + chr3_2:801171-801190 Msa0390160:CDS 35.0%
AGATTTGAACTCTTAAGCCA+TGG + chr3_2:801195-801214 Msa0390160:CDS 35.0%
!! GATTTTGAGGGTTTCAACAA+TGG + chr3_2:801245-801264 Msa0390160:CDS 35.0%
!! TGTTGTTGCAAAGCTTTGTT+TGG + chr3_2:801353-801372 Msa0390160:CDS 35.0%
!! TTGGTTCTTCAAGTTGATAG+TGG + chr3_2:801372-801391 Msa0390160:CDS 35.0%
!! TGATAGTGGAAATAAGGCAA+AGG + chr3_2:801386-801405 Msa0390160:CDS 35.0%
!!! GTGAGTTGTTGTTTTGTGAC+AGG - chr3_2:800331-800350 None:intergenic 40.0%
!!! ATGAGGGTTTTTGTTGTTGG+AGG - chr3_2:800472-800491 None:intergenic 40.0%
AGCACCAAAATCATCTCACA+TGG - chr3_2:801144-801163 None:intergenic 40.0%
CAATAGCTAAACCACATCCA+TGG - chr3_2:801215-801234 None:intergenic 40.0%
ATAAGGCAAAGGAGAAAGCA+AGG + chr3_2:801397-801416 Msa0390160:CDS 40.0%
TAAGGCAAAGGAGAAAGCAA+GGG + chr3_2:801398-801417 Msa0390160:CDS 40.0%
TTGCTTCATACCCAACAAGT+GGG + chr3_2:801481-801500 Msa0390160:CDS 40.0%
!!! GTGAGTTGTTGTTTTGTGAC+AGG - chr3_2:800331-800350 None:intergenic 40.0%
!!! ATGAGGGTTTTTGTTGTTGG+AGG - chr3_2:800472-800491 None:intergenic 40.0%
AGCACCAAAATCATCTCACA+TGG - chr3_2:801144-801163 None:intergenic 40.0%
CAATAGCTAAACCACATCCA+TGG - chr3_2:801215-801234 None:intergenic 40.0%
ATAAGGCAAAGGAGAAAGCA+AGG + chr3_2:801397-801416 Msa0390160:CDS 40.0%
TAAGGCAAAGGAGAAAGCAA+GGG + chr3_2:801398-801417 Msa0390160:CDS 40.0%
TTGCTTCATACCCAACAAGT+GGG + chr3_2:801481-801500 Msa0390160:CDS 40.0%
GATCCAGTTACTGTCTCAAC+AGG + chr3_2:800244-800263 Msa0390160:CDS 45.0%
ATGCCTGTTGAGACAGTAAC+TGG - chr3_2:800250-800269 None:intergenic 45.0%
TTCGATGCTTTCTCTGTCGT+AGG - chr3_2:800275-800294 None:intergenic 45.0%
! AGTCTACGAAGAGTGTGGTT+TGG - chr3_2:800388-800407 None:intergenic 45.0%
TTCGTAGACTCATCCAAGCA+TGG + chr3_2:800398-800417 Msa0390160:CDS 45.0%
AATTCATGGTGCACCATGCT+TGG - chr3_2:800414-800433 None:intergenic 45.0%
!!! GTTGTTGGAGGTTTTGGAGT+TGG - chr3_2:800460-800479 None:intergenic 45.0%
GAACTCTTAAGCCATGGATG+TGG + chr3_2:801201-801220 Msa0390160:CDS 45.0%
TGGCTAATGATAGAGCTGTG+AGG + chr3_2:801265-801284 Msa0390160:CDS 45.0%
CTTGCTTCATACCCAACAAG+TGG + chr3_2:801480-801499 Msa0390160:CDS 45.0%
GATCCAGTTACTGTCTCAAC+AGG + chr3_2:800244-800263 Msa0390160:CDS 45.0%
ATGCCTGTTGAGACAGTAAC+TGG - chr3_2:800250-800269 None:intergenic 45.0%
TTCGATGCTTTCTCTGTCGT+AGG - chr3_2:800275-800294 None:intergenic 45.0%
! AGTCTACGAAGAGTGTGGTT+TGG - chr3_2:800388-800407 None:intergenic 45.0%
TTCGTAGACTCATCCAAGCA+TGG + chr3_2:800398-800417 Msa0390160:CDS 45.0%
AATTCATGGTGCACCATGCT+TGG - chr3_2:800414-800433 None:intergenic 45.0%
!!! GTTGTTGGAGGTTTTGGAGT+TGG - chr3_2:800460-800479 None:intergenic 45.0%
GAACTCTTAAGCCATGGATG+TGG + chr3_2:801201-801220 Msa0390160:CDS 45.0%
TGGCTAATGATAGAGCTGTG+AGG + chr3_2:801265-801284 Msa0390160:CDS 45.0%
CTTGCTTCATACCCAACAAG+TGG + chr3_2:801480-801499 Msa0390160:CDS 45.0%
GGATGAGTCTACGAAGAGTG+TGG - chr3_2:800393-800412 None:intergenic 50.0%
! CCGACGATTTGTTTCGCTCT+CGG - chr3_2:800581-800600 None:intergenic 50.0%
CCGAGAGCGAAACAAATCGT+CGG + chr3_2:800578-800597 Msa0390160:CDS 50.0%
TGCTAAGAACTCGACTGCAC+CGG - chr3_2:800617-800636 None:intergenic 50.0%
GGATGAGTCTACGAAGAGTG+TGG - chr3_2:800393-800412 None:intergenic 50.0%
! CCGACGATTTGTTTCGCTCT+CGG - chr3_2:800581-800600 None:intergenic 50.0%
CCGAGAGCGAAACAAATCGT+CGG + chr3_2:800578-800597 Msa0390160:CDS 50.0%
TGCTAAGAACTCGACTGCAC+CGG - chr3_2:800617-800636 None:intergenic 50.0%
CGTCGGTGTATCGAATCAGC+CGG + chr3_2:800595-800614 Msa0390160:CDS 55.0%
CGTCGGTGTATCGAATCAGC+CGG + chr3_2:800595-800614 Msa0390160:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 800181 801506 800181 ID=Msa0390160;Name=Msa0390160
chr3_2 mRNA 800181 801506 800181 ID=Msa0390160-mRNA-1;Parent=Msa0390160;Name=Msa0390160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|441
chr3_2 exon 800181 801506 800181 ID=Msa0390160-mRNA-1:exon:251;Parent=Msa0390160-mRNA-1
chr3_2 CDS 800181 801506 800181 ID=Msa0390160-mRNA-1:cds;Parent=Msa0390160-mRNA-1
Gene Sequence

>Msa0390160

ATGAATCAAGACATCGAAGTTACACCATTTTTTCTTTGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGATGCAAATGATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATGAATTCTTCTTATGGAGTTGAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACCCTCATTGAAAAACTCCTCAAAGAAGCTTCTGATTCTTCAGATTCACCTCATTTACTTATCCAAACCCTAAAAAAGCTCAAAACAATCGCTTCCGAGAGCGAAACAAATCGTCGGTGTATCGAATCAGCCGGTGCAGTCGAGTTCTTAGCATCAATAGTAACAAAAAACAACACAAGTTGTTCATCTTCATGTTCAGCAACAGAATTAATTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTATAGACTCATTAATGAGATTATTGCAAAAGGGTAACTACGATTCAAGAACACACGCAGTTTTTCTGTTGAAATCTATGTCAAAAGTAGCTGATCCAACAAAGCTAGCCAATCTAAAGACCGAGTTTTTCGTCGAGTTAGTTCAACTTCTCAAAGACCAGATATCAAAGAAAGCATCAAAAGCAACACTACAAACGCTAATTCAACTCGTCGAATTCGGAAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATTTTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTCTTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTTTGAGGGTTTCAACAATGGCTAATGATAGAGCTGTGAGGATTCTTCTTTCTGTTTCAAGATTTTCTGCTACACATTTTGTTCTTCAAGAAATGTTACGAATTGGTGTTGTTGCAAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTGCTTGCTTCATACCCAACAAGTGGGTAA

Protein sequence

>Msa0390160

MNQDIEVTPFFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDDANDLIILTPNHTLRRLIQAWCTMNSSYGVERIPTPKPPTTKTLIEKLLKEASDSSDSPHLLIQTLKKLKTIASESETNRRCIESAGAVEFLASIVTKNNTSCSSSCSATELIEASFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNFKNGEFIDSLMRLLQKGNYDSRTHAVFLLKSMSKVADPTKLANLKTEFFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVLQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTSG*