Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017290 | PNY14079.1 | 65.660 | 265 | 91 | 0 | 150 | 414 | 266 | 530 | 4.72e-119 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017290 | A0A2K3PFL3 | 65.660 | 265 | 91 | 0 | 150 | 414 | 266 | 530 | 2.25e-119 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa0017290 | 0.826931 | 2.069415e-54 | -8.615850e-47 |
| Msa0017290 | Msa0065500 | 0.967888 | 6.672551e-128 | -8.615850e-47 |
| Msa0017290 | Msa0087010 | 0.823886 | 1.088008e-53 | -8.615850e-47 |
| Msa0017290 | Msa0087020 | 0.991580 | 2.068112e-188 | -8.615850e-47 |
| Msa0017290 | Msa0157210 | 0.879127 | 1.605198e-69 | -8.615850e-47 |
| Msa0017290 | Msa0606960 | 0.881002 | 3.446292e-70 | -8.615850e-47 |
| Msa0017290 | Msa1192990 | 0.822142 | 2.774335e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017290 | MtrunA17_Chr6g0476101 | 39.024 | 246 | 145 | 3 | 150 | 394 | 48 | 289 | 1.03e-58 | 193 |
| Msa0017290 | MtrunA17_Chr3g0112101 | 35.581 | 267 | 169 | 3 | 150 | 415 | 348 | 612 | 4.39e-52 | 186 |
| Msa0017290 | MtrunA17_Chr6g0455641 | 31.298 | 262 | 166 | 3 | 150 | 404 | 222 | 476 | 7.04e-40 | 150 |
| Msa0017290 | MtrunA17_Chr6g0454041 | 31.873 | 251 | 169 | 2 | 155 | 404 | 335 | 584 | 2.54e-38 | 147 |
| Msa0017290 | MtrunA17_Chr2g0302451 | 30.970 | 268 | 178 | 4 | 150 | 413 | 454 | 718 | 1.54e-36 | 142 |
| Msa0017290 | MtrunA17_Chr6g0454051 | 28.458 | 253 | 175 | 4 | 157 | 404 | 287 | 538 | 2.08e-34 | 135 |
| Msa0017290 | MtrunA17_Chr3g0126261 | 30.859 | 256 | 173 | 4 | 160 | 413 | 177 | 430 | 7.45e-34 | 133 |
| Msa0017290 | MtrunA17_Chr6g0454061 | 27.099 | 262 | 183 | 5 | 150 | 404 | 223 | 483 | 7.16e-33 | 130 |
| Msa0017290 | MtrunA17_Chr2g0323591 | 35.922 | 103 | 61 | 3 | 15 | 114 | 21 | 121 | 2.84e-13 | 67.8 |
| Msa0017290 | MtrunA17_Chr6g0476241 | 41.772 | 79 | 44 | 2 | 36 | 113 | 24 | 101 | 8.27e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017290 | AT3G22220.3 | 36.090 | 266 | 164 | 4 | 150 | 414 | 338 | 598 | 2.96e-48 | 176 |
| Msa0017290 | AT3G22220.4 | 36.090 | 266 | 164 | 4 | 150 | 414 | 338 | 598 | 2.96e-48 | 176 |
| Msa0017290 | AT3G22220.2 | 36.090 | 266 | 164 | 4 | 150 | 414 | 338 | 598 | 2.96e-48 | 176 |
| Msa0017290 | AT3G22220.1 | 36.090 | 266 | 164 | 4 | 150 | 414 | 338 | 598 | 2.96e-48 | 176 |
| Msa0017290 | AT5G33406.1 | 41.346 | 208 | 120 | 1 | 215 | 422 | 11 | 216 | 6.00e-48 | 171 |
| Msa0017290 | AT4G15020.2 | 35.714 | 266 | 167 | 4 | 150 | 414 | 342 | 604 | 3.30e-47 | 173 |
| Msa0017290 | AT4G15020.1 | 35.714 | 266 | 167 | 4 | 150 | 414 | 342 | 604 | 3.30e-47 | 173 |
| Msa0017290 | AT3G17450.2 | 30.802 | 237 | 159 | 4 | 148 | 380 | 448 | 683 | 1.63e-37 | 145 |
| Msa0017290 | AT3G17450.1 | 30.802 | 237 | 159 | 4 | 148 | 380 | 448 | 683 | 1.63e-37 | 145 |
| Msa0017290 | AT1G79740.3 | 31.559 | 263 | 173 | 5 | 160 | 421 | 130 | 386 | 4.22e-35 | 136 |
| Msa0017290 | AT1G79740.2 | 31.559 | 263 | 173 | 5 | 160 | 421 | 130 | 386 | 4.22e-35 | 136 |
| Msa0017290 | AT1G79740.1 | 31.559 | 263 | 173 | 5 | 160 | 421 | 263 | 519 | 8.83e-35 | 137 |
| Msa0017290 | AT1G79740.4 | 31.559 | 263 | 173 | 5 | 160 | 421 | 263 | 519 | 8.83e-35 | 137 |
| Msa0017290 | AT3G13030.3 | 26.019 | 319 | 209 | 7 | 115 | 422 | 160 | 462 | 4.41e-30 | 122 |
| Msa0017290 | AT3G13030.4 | 26.019 | 319 | 209 | 7 | 115 | 422 | 160 | 462 | 4.41e-30 | 122 |
| Msa0017290 | AT3G13030.1 | 26.019 | 319 | 209 | 7 | 115 | 422 | 160 | 462 | 4.41e-30 | 122 |
| Msa0017290 | AT3G13030.2 | 26.019 | 319 | 209 | 7 | 115 | 422 | 160 | 462 | 4.41e-30 | 122 |
| Msa0017290 | AT3G13020.1 | 29.478 | 268 | 163 | 7 | 150 | 407 | 270 | 521 | 1.79e-28 | 118 |
| Msa0017290 | AT1G36095.1 | 27.881 | 269 | 144 | 6 | 55 | 273 | 29 | 297 | 1.30e-23 | 100 |
| Msa0017290 | AT3G13030.5 | 23.765 | 324 | 177 | 8 | 115 | 422 | 160 | 429 | 4.62e-21 | 95.9 |
| Msa0017290 | AT3G13010.1 | 23.887 | 247 | 174 | 7 | 159 | 404 | 252 | 485 | 1.94e-15 | 79.0 |
Find 100 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCTGTTGCTTCCTCTAT+TGG | 0.169469 | 1_1:-28656280 | Msa0017290:CDS |
| TCAAGAGTGGTCAGACTTAA+AGG | 0.233829 | 1_1:-28654970 | Msa0017290:CDS |
| TTGTTCTTCAAGTCGCATTT+TGG | 0.258584 | 1_1:-28654911 | Msa0017290:CDS |
| AATCTGTTGCTTCCTCTATT+GGG | 0.309777 | 1_1:-28656279 | Msa0017290:CDS |
| TTTCATCTATAACCATTCTT+TGG | 0.337391 | 1_1:-28655123 | Msa0017290:CDS |
| TAGAAAGCTTTCTTCTTCAA+TGG | 0.342613 | 1_1:-28654577 | Msa0017290:CDS |
| TTAAATTGGCAGAAGCAATA+AGG | 0.345705 | 1_1:-28654497 | Msa0017290:CDS |
| GGATAAGTATAGGGCTAGTT+CGG | 0.346870 | 1_1:-28654526 | Msa0017290:CDS |
| AGTCTACGGGAGGAATTTCC+AGG | 0.367684 | 1_1:-28656159 | Msa0017290:CDS |
| TGATGACATCCATGCAGATT+TGG | 0.370501 | 1_1:-28654547 | Msa0017290:CDS |
| GTTACAACCTTCTTTACTCT+TGG | 0.375352 | 1_1:+28655167 | None:intergenic |
| GTTTATGCTCTTAAAGCTAT+GGG | 0.386704 | 1_1:-28654879 | Msa0017290:CDS |
| TAGTTCGGGTAACTTTAAAT+TGG | 0.394568 | 1_1:-28654511 | Msa0017290:CDS |
| GTTGAGGGAGAAGGCTGAAA+TGG | 0.395558 | 1_1:-28655090 | Msa0017290:CDS |
| CACGTGTGATTATTGTTTGT+TGG | 0.404102 | 1_1:-28656182 | Msa0017290:CDS |
| TGTTTATGCTCTTAAAGCTA+TGG | 0.411079 | 1_1:-28654880 | Msa0017290:CDS |
| TGCAGATTTGGATAAGTATA+GGG | 0.412113 | 1_1:-28654535 | Msa0017290:CDS |
| ATGCAGATTTGGATAAGTAT+AGG | 0.415922 | 1_1:-28654536 | Msa0017290:CDS |
| GATGGAAGTATAACAGTGTA+AGG | 0.417281 | 1_1:-28656228 | Msa0017290:CDS |
| GATTTAATGCTAGAAAAGAT+TGG | 0.417475 | 1_1:-28655197 | Msa0017290:CDS |
| TTGAGATTGTTGACAGGAGG+TGG | 0.418360 | 1_1:-28654719 | Msa0017290:CDS |
| GACTGAAATGGAGAGTCTTC+CGG | 0.425050 | 1_1:-28655939 | Msa0017290:CDS |
| TTATTGTTTGTTGGAGTCTA+CGG | 0.429758 | 1_1:-28656173 | Msa0017290:CDS |
| CAGGGCCAAACAAAATCAAA+TGG | 0.435077 | 1_1:-28656140 | Msa0017290:CDS |
| GATAAGTATAGGGCTAGTTC+GGG | 0.441052 | 1_1:-28654525 | Msa0017290:CDS |
| ATCAAGCAATGGTGGGAGTA+AGG | 0.451264 | 1_1:-28654794 | Msa0017290:CDS |
| GAAGGTTGGTAAGTGGGAAA+AGG | 0.452327 | 1_1:-28655967 | Msa0017290:CDS |
| TGTTGCTTCCTCTATTGGGC+TGG | 0.453869 | 1_1:-28656275 | Msa0017290:CDS |
| CAAAATCAAATGGGAGTGAC+AGG | 0.455222 | 1_1:-28656130 | Msa0017290:CDS |
| CATCATCCGTTGCATGCAGC+TGG | 0.456532 | 1_1:-28654684 | Msa0017290:CDS |
| TCACCGGCATTAGAAGATAA+TGG | 0.457229 | 1_1:+28656316 | None:intergenic |
| AAGGTTGGTAAGTGGGAAAA+GGG | 0.459998 | 1_1:-28655966 | Msa0017290:CDS |
| ATCTTGAGCCTCATTTGAAA+CGG | 0.462692 | 1_1:+28656021 | None:intergenic |
| GCAGCACGACTTCAAGAGAT+TGG | 0.466842 | 1_1:-28655989 | Msa0017290:CDS |
| GAGTCTTCCGGCCACTAAGA+AGG | 0.470821 | 1_1:-28655927 | Msa0017290:CDS |
| AGAAGTTGCCTTCTTACCCT+TGG | 0.474519 | 1_1:+28654935 | None:intergenic |
| AGCCTAAGTACTCTTATAAG+AGG | 0.478383 | 1_1:+28654855 | None:intergenic |
| TGGTTTGACCAGCCCAATAG+AGG | 0.478495 | 1_1:+28656267 | None:intergenic |
| GGATTGTTATAAAAGTGCTT+CGG | 0.481643 | 1_1:+28654648 | None:intergenic |
| TATTGTTTGTTGGAGTCTAC+GGG | 0.483113 | 1_1:-28656172 | Msa0017290:CDS |
| CAAACTTTCTTCAATTGCAA+AGG | 0.488401 | 1_1:-28655034 | Msa0017290:CDS |
| CATCCTATGTCAGGAAGGGT+TGG | 0.491956 | 1_1:+28656247 | None:intergenic |
| GAAAAGGGCAAGGACTGAAA+TGG | 0.492542 | 1_1:-28655951 | Msa0017290:CDS |
| ACACAAGGAATTAGTCTTGT+CGG | 0.492872 | 1_1:-28655146 | Msa0017290:CDS |
| CGAAATAGTAGTCACTTACC+AGG | 0.504939 | 1_1:+28654450 | None:intergenic |
| TTATACTTCCATCCTATGTC+AGG | 0.505546 | 1_1:+28656238 | None:intergenic |
| AGATTGGAAGGTTGGTAAGT+GGG | 0.515155 | 1_1:-28655973 | Msa0017290:CDS |
| ACTTCAAGAGATTGGAAGGT+TGG | 0.517951 | 1_1:-28655981 | Msa0017290:CDS |
| GAGGATACGCGTACATCTCC+TGG | 0.518363 | 1_1:-28654468 | Msa0017290:CDS |
| CTGTCAACAATCTCAAGGAT+TGG | 0.518832 | 1_1:+28654726 | None:intergenic |
| ACTAAGAAGGGTAATACAAA+AGG | 0.520152 | 1_1:-28655914 | Msa0017290:intron |
| TTTGAATTTGTTGAGGGAGA+AGG | 0.521056 | 1_1:-28655099 | Msa0017290:CDS |
| GGTGAAATCCGTTTCAAATG+AGG | 0.523303 | 1_1:-28656029 | Msa0017290:CDS |
| ACAAATTCAAAACCAAAGAA+TGG | 0.528552 | 1_1:+28655111 | None:intergenic |
| TGATATATGAAACTCATAGC+AGG | 0.529944 | 1_1:+28654813 | None:intergenic |
| TAAAGCTTGCTTAACGACAC+TGG | 0.531131 | 1_1:-28656101 | Msa0017290:CDS |
| GTATTACCCTTCTTAGTGGC+CGG | 0.542772 | 1_1:+28655920 | None:intergenic |
| TGACGAAGCCAAGGGTAAGA+AGG | 0.542807 | 1_1:-28654943 | Msa0017290:CDS |
| TCCTTGAGATTGTTGACAGG+AGG | 0.550735 | 1_1:-28654722 | Msa0017290:CDS |
| AAACCAACCCTTCCTGACAT+AGG | 0.551809 | 1_1:-28656250 | Msa0017290:CDS |
| TTTCATATATCAAGCAATGG+TGG | 0.551820 | 1_1:-28654802 | Msa0017290:CDS |
| AAAGGTGAGTGACGAAGCCA+AGG | 0.551906 | 1_1:-28654952 | Msa0017290:CDS |
| CACGACTTCAAGAGATTGGA+AGG | 0.552643 | 1_1:-28655985 | Msa0017290:CDS |
| CAACCCTTCCTGACATAGGA+TGG | 0.554812 | 1_1:-28656246 | Msa0017290:CDS |
| TTCATATATCAAGCAATGGT+GGG | 0.555106 | 1_1:-28654801 | Msa0017290:CDS |
| GAGATTGGAAGGTTGGTAAG+TGG | 0.556292 | 1_1:-28655974 | Msa0017290:CDS |
| AGGGCCAAACAAAATCAAAT+GGG | 0.560257 | 1_1:-28656139 | Msa0017290:CDS |
| AGTCTTCCGGCCACTAAGAA+GGG | 0.561768 | 1_1:-28655926 | Msa0017290:CDS |
| TGAGATTGTTGACAGGAGGT+GGG | 0.563133 | 1_1:-28654718 | Msa0017290:CDS |
| GCACCATTATCTTCTAATGC+CGG | 0.566676 | 1_1:-28656319 | Msa0017290:CDS |
| AGCTAATGAGGAAGCTAGAG+TGG | 0.569343 | 1_1:-28656056 | Msa0017290:CDS |
| CAATCCTTGAGATTGTTGAC+AGG | 0.573892 | 1_1:-28654725 | Msa0017290:CDS |
| TGAGGAAGCTAGAGTGGCAA+AGG | 0.574189 | 1_1:-28656050 | Msa0017290:CDS |
| CCACTCTTGAGAAGTGAACA+TGG | 0.582860 | 1_1:+28654983 | None:intergenic |
| TCTTATAAGAGTACTTAGGC+TGG | 0.583735 | 1_1:-28654853 | Msa0017290:CDS |
| ACCTCCTGTCAACAATCTCA+AGG | 0.585500 | 1_1:+28654721 | None:intergenic |
| TATACTTATCCAAATCTGCA+TGG | 0.585773 | 1_1:+28654538 | None:intergenic |
| ACTTCCATCCTATGTCAGGA+AGG | 0.587027 | 1_1:+28656242 | None:intergenic |
| CTTCCATCCTATGTCAGGAA+GGG | 0.587261 | 1_1:+28656243 | None:intergenic |
| TCTATACAATGTGCTGCACA+TGG | 0.597200 | 1_1:+28655218 | None:intergenic |
| TTGTGCAGCAGAAGAATCAC+CGG | 0.597962 | 1_1:+28656300 | None:intergenic |
| TGGTAAGTGGGAAAAGGGCA+AGG | 0.600199 | 1_1:-28655961 | Msa0017290:CDS |
| TGAGGCTCAAGATGATGAAG+AGG | 0.609931 | 1_1:-28656011 | Msa0017290:CDS |
| AAATGTCCAGCTGCATGCAA+CGG | 0.610121 | 1_1:+28654678 | None:intergenic |
| TGATTAGACATGGAGTCACA+AGG | 0.610919 | 1_1:-28655064 | Msa0017290:CDS |
| TTGCTTAACGACACTGGAGG+AGG | 0.611100 | 1_1:-28656095 | Msa0017290:CDS |
| GATATATGAAACTCATAGCA+GGG | 0.619541 | 1_1:+28654814 | None:intergenic |
| ATGGAAGTATAACAGTGTAA+GGG | 0.622725 | 1_1:-28656227 | Msa0017290:CDS |
| GAGATTGTTGACAGGAGGTG+GGG | 0.629952 | 1_1:-28654717 | Msa0017290:CDS |
| CCATGTTCACTTCTCAAGAG+TGG | 0.631953 | 1_1:-28654983 | Msa0017290:CDS |
| GAGTTTCATATATCAAGCAA+TGG | 0.636888 | 1_1:-28654805 | Msa0017290:CDS |
| TTTATGCTCTTAAAGCTATG+GGG | 0.638889 | 1_1:-28654878 | Msa0017290:CDS |
| GAAATGGAGTTGATTAGACA+TGG | 0.642103 | 1_1:-28655074 | Msa0017290:CDS |
| GTCTACGGGAGGAATTTCCA+GGG | 0.658920 | 1_1:-28656158 | Msa0017290:CDS |
| GGCCTCTTATAAGAGTACTT+AGG | 0.659644 | 1_1:-28654857 | Msa0017290:CDS |
| GTAAAGAAGGTTGTAACACA+AGG | 0.668251 | 1_1:-28655161 | Msa0017290:CDS |
| TGTTTGTTGGAGTCTACGGG+AGG | 0.672619 | 1_1:-28656169 | Msa0017290:CDS |
| AGAAGCAATAAGGCACAGAG+AGG | 0.676918 | 1_1:-28654487 | Msa0017290:CDS |
| AAGGTGAGTGACGAAGCCAA+GGG | 0.690496 | 1_1:-28654951 | Msa0017290:CDS |
| AGCTTGCTTAACGACACTGG+AGG | 0.743395 | 1_1:-28656098 | Msa0017290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAATTAAGAAAAAATT+TGG | - | chr1_1:28656030-28656049 | Msa0017290:CDS | 10.0% |
| !!! | TTGGAAAAATATTTTTGTAA+AGG | - | chr1_1:28655520-28655539 | Msa0017290:intron | 15.0% |
| !! | TAAAAGAACATTAAATCCAA+TGG | + | chr1_1:28654914-28654933 | None:intergenic | 20.0% |
| !! | AAGTATTAAAGATAGAGATA+AGG | - | chr1_1:28654970-28654989 | Msa0017290:CDS | 20.0% |
| !! | ATCAAAAAGTTTCAAATTGA+TGG | - | chr1_1:28655066-28655085 | Msa0017290:CDS | 20.0% |
| !!! | AAAAGCAATTTTTGATATGT+TGG | - | chr1_1:28655351-28655370 | Msa0017290:intron | 20.0% |
| !! | GTAATAATACATGATATGTT+TGG | + | chr1_1:28655487-28655506 | None:intergenic | 20.0% |
| !! | TATTACGTTCTTTAATTGTT+TGG | - | chr1_1:28655501-28655520 | Msa0017290:intron | 20.0% |
| !!! | ATTGATTTTAAGAGCTAATG+AGG | - | chr1_1:28654733-28654752 | Msa0017290:CDS | 25.0% |
| ! | AAAAAAAGCGAGTTATATAC+TGG | + | chr1_1:28655015-28655034 | None:intergenic | 25.0% |
| !!! | ACTCGCTTTTTTTATCTAAA+TGG | - | chr1_1:28655022-28655041 | Msa0017290:CDS | 25.0% |
| !! | AAATTGATGGTTGAAGAAAT+TGG | - | chr1_1:28655079-28655098 | Msa0017290:CDS | 25.0% |
| ! | GGATAATACTAATCAAATGT+TGG | - | chr1_1:28655171-28655190 | Msa0017290:CDS | 25.0% |
| !!! | CATATCAAAAATTGCTTTTC+CGG | + | chr1_1:28655350-28655369 | None:intergenic | 25.0% |
| !! | ATATGTTGGATGAATTTGTT+GGG | - | chr1_1:28655365-28655384 | Msa0017290:intron | 25.0% |
| ! | GATTTAATGCTAGAAAAGAT+TGG | - | chr1_1:28655604-28655623 | Msa0017290:intron | 25.0% |
| ! | AAAAATTCCAAGAGTAAAGA+AGG | - | chr1_1:28655627-28655646 | Msa0017290:intron | 25.0% |
| ! | TTTCATCTATAACCATTCTT+TGG | - | chr1_1:28655678-28655697 | Msa0017290:intron | 25.0% |
| ! | ACAAATTCAAAACCAAAGAA+TGG | + | chr1_1:28655693-28655712 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGAATTTGTTGA+GGG | - | chr1_1:28655696-28655715 | Msa0017290:intron | 25.0% |
| !!! | TGGTTCTAATTTTTTGTCTT+AGG | + | chr1_1:28655801-28655820 | None:intergenic | 25.0% |
| ! | AGATAAAAATGATGCGTTAT+TGG | - | chr1_1:28656182-28656201 | Msa0017290:CDS | 25.0% |
| ! | ATGGAAGTATAACAGTGTAA+GGG | - | chr1_1:28654574-28654593 | Msa0017290:CDS | 30.0% |
| ! | TTATTGTTTGTTGGAGTCTA+CGG | - | chr1_1:28654628-28654647 | Msa0017290:CDS | 30.0% |
| ! | TTTTGTATTACCCTTCTTAG+TGG | + | chr1_1:28654888-28654907 | None:intergenic | 30.0% |
| ACTAAGAAGGGTAATACAAA+AGG | - | chr1_1:28654887-28654906 | Msa0017290:CDS | 30.0% | |
| ! | AATGTTCTTTTAAACACCTG+AGG | - | chr1_1:28654922-28654941 | Msa0017290:CDS | 30.0% |
| GTTGAAGAAATTGGTCAATA+TGG | - | chr1_1:28655088-28655107 | Msa0017290:CDS | 30.0% | |
| GATATGTTGGATGAATTTGT+TGG | - | chr1_1:28655364-28655383 | Msa0017290:intron | 30.0% | |
| !! | TATGTTGGATGAATTTGTTG+GGG | - | chr1_1:28655366-28655385 | Msa0017290:intron | 30.0% |
| !!! | CTTTGGTTTTGAATTTGTTG+AGG | - | chr1_1:28655695-28655714 | Msa0017290:intron | 30.0% |
| CAAACTTTCTTCAATTGCAA+AGG | - | chr1_1:28655767-28655786 | Msa0017290:intron | 30.0% | |
| TGTTTATGCTCTTAAAGCTA+TGG | - | chr1_1:28655921-28655940 | Msa0017290:CDS | 30.0% | |
| GTTTATGCTCTTAAAGCTAT+GGG | - | chr1_1:28655922-28655941 | Msa0017290:CDS | 30.0% | |
| TTTATGCTCTTAAAGCTATG+GGG | - | chr1_1:28655923-28655942 | Msa0017290:CDS | 30.0% | |
| GATATATGAAACTCATAGCA+GGG | + | chr1_1:28655990-28656009 | None:intergenic | 30.0% | |
| TGATATATGAAACTCATAGC+AGG | + | chr1_1:28655991-28656010 | None:intergenic | 30.0% | |
| GAGTTTCATATATCAAGCAA+TGG | - | chr1_1:28655996-28656015 | Msa0017290:CDS | 30.0% | |
| TTTCATATATCAAGCAATGG+TGG | - | chr1_1:28655999-28656018 | Msa0017290:CDS | 30.0% | |
| TTCATATATCAAGCAATGGT+GGG | - | chr1_1:28656000-28656019 | Msa0017290:CDS | 30.0% | |
| !! | GGATTGTTATAAAAGTGCTT+CGG | + | chr1_1:28656156-28656175 | None:intergenic | 30.0% |
| !! | GCATCATTTTTATCTATTGC+TGG | + | chr1_1:28656177-28656196 | None:intergenic | 30.0% |
| AAAAATGATGCGTTATTGGA+TGG | - | chr1_1:28656186-28656205 | Msa0017290:CDS | 30.0% | |
| TAGAAAGCTTTCTTCTTCAA+TGG | - | chr1_1:28656224-28656243 | Msa0017290:CDS | 30.0% | |
| TATACTTATCCAAATCTGCA+TGG | + | chr1_1:28656266-28656285 | None:intergenic | 30.0% | |
| ATGCAGATTTGGATAAGTAT+AGG | - | chr1_1:28656265-28656284 | Msa0017290:CDS | 30.0% | |
| TGCAGATTTGGATAAGTATA+GGG | - | chr1_1:28656266-28656285 | Msa0017290:CDS | 30.0% | |
| TAGTTCGGGTAACTTTAAAT+TGG | - | chr1_1:28656290-28656309 | Msa0017290:CDS | 30.0% | |
| TTAAATTGGCAGAAGCAATA+AGG | - | chr1_1:28656304-28656323 | Msa0017290:CDS | 30.0% | |
| ! | AATCTGTTGCTTCCTCTATT+GGG | - | chr1_1:28654522-28654541 | Msa0017290:CDS | 35.0% |
| TTATACTTCCATCCTATGTC+AGG | + | chr1_1:28654566-28654585 | None:intergenic | 35.0% | |
| ! | GATGGAAGTATAACAGTGTA+AGG | - | chr1_1:28654573-28654592 | Msa0017290:CDS | 35.0% |
| CACGTGTGATTATTGTTTGT+TGG | - | chr1_1:28654619-28654638 | Msa0017290:CDS | 35.0% | |
| ! | TATTGTTTGTTGGAGTCTAC+GGG | - | chr1_1:28654629-28654648 | Msa0017290:CDS | 35.0% |
| AGGGCCAAACAAAATCAAAT+GGG | - | chr1_1:28654662-28654681 | Msa0017290:CDS | 35.0% | |
| !! | CACTCCCATTTGATTTTGTT+TGG | + | chr1_1:28654669-28654688 | None:intergenic | 35.0% |
| ATCTTGAGCCTCATTTGAAA+CGG | + | chr1_1:28654783-28654802 | None:intergenic | 35.0% | |
| TTTCTCAACTCATGATAGGA+AGG | + | chr1_1:28655130-28655149 | None:intergenic | 35.0% | |
| CCAACTCTTTGTTAAGACAT+GGG | + | chr1_1:28655153-28655172 | None:intergenic | 35.0% | |
| TCCAACTCTTTGTTAAGACA+TGG | + | chr1_1:28655154-28655173 | None:intergenic | 35.0% | |
| TCAAATGTTGGAGACTAACA+AGG | - | chr1_1:28655183-28655202 | Msa0017290:CDS | 35.0% | |
| CAATGTTCTTCCCTTTGTAT+CGG | + | chr1_1:28655254-28655273 | None:intergenic | 35.0% | |
| TTAATAAACATAGTGCCTGG+CGG | + | chr1_1:28655298-28655317 | None:intergenic | 35.0% | |
| CTCTTAATAAACATAGTGCC+TGG | + | chr1_1:28655301-28655320 | None:intergenic | 35.0% | |
| GAAGAAAGTAGAAACCTTAC+CGG | + | chr1_1:28655452-28655471 | None:intergenic | 35.0% | |
| ! | CATGGAGTCCAAAAGATTTT+TGG | + | chr1_1:28655568-28655587 | None:intergenic | 35.0% |
| GTTACAACCTTCTTTACTCT+TGG | + | chr1_1:28655637-28655656 | None:intergenic | 35.0% | |
| GTAAAGAAGGTTGTAACACA+AGG | - | chr1_1:28655640-28655659 | Msa0017290:intron | 35.0% | |
| !! | ACACAAGGAATTAGTCTTGT+CGG | - | chr1_1:28655655-28655674 | Msa0017290:intron | 35.0% |
| !! | TTTGAATTTGTTGAGGGAGA+AGG | - | chr1_1:28655702-28655721 | Msa0017290:intron | 35.0% |
| ! | GAAATGGAGTTGATTAGACA+TGG | - | chr1_1:28655727-28655746 | Msa0017290:intron | 35.0% |
| ! | TTGTTCTTCAAGTCGCATTT+TGG | - | chr1_1:28655890-28655909 | Msa0017290:intron | 35.0% |
| ! | TGTTCTTCAAGTCGCATTTT+GGG | - | chr1_1:28655891-28655910 | Msa0017290:intron | 35.0% |
| AGCCTAAGTACTCTTATAAG+AGG | + | chr1_1:28655949-28655968 | None:intergenic | 35.0% | |
| !! | TCTTATAAGAGTACTTAGGC+TGG | - | chr1_1:28655948-28655967 | Msa0017290:CDS | 35.0% |
| GCACCATTATCTTCTAATGC+CGG | - | chr1_1:28654482-28654501 | Msa0017290:CDS | 40.0% | |
| TCACCGGCATTAGAAGATAA+TGG | + | chr1_1:28654488-28654507 | None:intergenic | 40.0% | |
| ! | CAATCTGTTGCTTCCTCTAT+TGG | - | chr1_1:28654521-28654540 | Msa0017290:CDS | 40.0% |
| !! | CATTTGATTTTGTTTGGCCC+TGG | + | chr1_1:28654663-28654682 | None:intergenic | 40.0% |
| CAGGGCCAAACAAAATCAAA+TGG | - | chr1_1:28654661-28654680 | Msa0017290:CDS | 40.0% | |
| CAAAATCAAATGGGAGTGAC+AGG | - | chr1_1:28654671-28654690 | Msa0017290:CDS | 40.0% | |
| ! | TAAAGCTTGCTTAACGACAC+TGG | - | chr1_1:28654700-28654719 | Msa0017290:CDS | 40.0% |
| GGTGAAATCCGTTTCAAATG+AGG | - | chr1_1:28654772-28654791 | Msa0017290:CDS | 40.0% | |
| ACTTCAAGAGATTGGAAGGT+TGG | - | chr1_1:28654820-28654839 | Msa0017290:CDS | 40.0% | |
| !! | AGATTGGAAGGTTGGTAAGT+GGG | - | chr1_1:28654828-28654847 | Msa0017290:CDS | 40.0% |
| !! | AAGGTTGGTAAGTGGGAAAA+GGG | - | chr1_1:28654835-28654854 | Msa0017290:CDS | 40.0% |
| GGGTAATACAAAAGGTCCAT+TGG | - | chr1_1:28654895-28654914 | Msa0017290:CDS | 40.0% | |
| TTAAACACCTGAGGCAACAT+TGG | - | chr1_1:28654931-28654950 | Msa0017290:CDS | 40.0% | |
| TAAACACCTGAGGCAACATT+GGG | - | chr1_1:28654932-28654951 | Msa0017290:CDS | 40.0% | |
| TGGGTTTCTCAACTCATGAT+AGG | + | chr1_1:28655134-28655153 | None:intergenic | 40.0% | |
| CCCATGTCTTAACAAAGAGT+TGG | - | chr1_1:28655150-28655169 | Msa0017290:CDS | 40.0% | |
| AATGTTGGAGACTAACAAGG+CGG | - | chr1_1:28655186-28655205 | Msa0017290:CDS | 40.0% | |
| GGTTGTTCAATAATGTCCGA+TGG | - | chr1_1:28655223-28655242 | Msa0017290:CDS | 40.0% | |
| GTTCAATAATGTCCGATGGT+TGG | - | chr1_1:28655227-28655246 | Msa0017290:CDS | 40.0% | |
| ! | TTTTTAATCAACTCTCCGCC+AGG | - | chr1_1:28655280-28655299 | Msa0017290:intron | 40.0% |
| ! | TTTTCCGGTTTTCACTTCTG+AGG | + | chr1_1:28655335-28655354 | None:intergenic | 40.0% |
| !! | GATGAATTTGTTGGGGAGAT+TGG | - | chr1_1:28655373-28655392 | Msa0017290:intron | 40.0% |
| CTTACCGGCCAAAACATAAT+TGG | + | chr1_1:28655437-28655456 | None:intergenic | 40.0% | |
| !!! | CAATTATGTTTTGGCCGGTA+AGG | - | chr1_1:28655435-28655454 | Msa0017290:intron | 40.0% |
| ! | CAGCGAGACCAAAAATCTTT+TGG | - | chr1_1:28655557-28655576 | Msa0017290:intron | 40.0% |
| TCTATACAATGTGCTGCACA+TGG | + | chr1_1:28655586-28655605 | None:intergenic | 40.0% | |
| TGATTAGACATGGAGTCACA+AGG | - | chr1_1:28655737-28655756 | Msa0017290:intron | 40.0% | |
| TCAAGAGTGGTCAGACTTAA+AGG | - | chr1_1:28655831-28655850 | Msa0017290:intron | 40.0% | |
| !! | GGCCTCTTATAAGAGTACTT+AGG | - | chr1_1:28655944-28655963 | Msa0017290:CDS | 40.0% |
| CTGTCAACAATCTCAAGGAT+TGG | + | chr1_1:28656078-28656097 | None:intergenic | 40.0% | |
| CAATCCTTGAGATTGTTGAC+AGG | - | chr1_1:28656076-28656095 | Msa0017290:CDS | 40.0% | |
| TGATGACATCCATGCAGATT+TGG | - | chr1_1:28656254-28656273 | Msa0017290:CDS | 40.0% | |
| !! | GGATAAGTATAGGGCTAGTT+CGG | - | chr1_1:28656275-28656294 | Msa0017290:CDS | 40.0% |
| !! | GATAAGTATAGGGCTAGTTC+GGG | - | chr1_1:28656276-28656295 | Msa0017290:CDS | 40.0% |
| TTGTGCAGCAGAAGAATCAC+CGG | + | chr1_1:28654504-28654523 | None:intergenic | 45.0% | |
| AAACCAACCCTTCCTGACAT+AGG | - | chr1_1:28654551-28654570 | Msa0017290:CDS | 45.0% | |
| CTTCCATCCTATGTCAGGAA+GGG | + | chr1_1:28654561-28654580 | None:intergenic | 45.0% | |
| ACTTCCATCCTATGTCAGGA+AGG | + | chr1_1:28654562-28654581 | None:intergenic | 45.0% | |
| AGCTAATGAGGAAGCTAGAG+TGG | - | chr1_1:28654745-28654764 | Msa0017290:CDS | 45.0% | |
| TGAGGCTCAAGATGATGAAG+AGG | - | chr1_1:28654790-28654809 | Msa0017290:CDS | 45.0% | |
| CACGACTTCAAGAGATTGGA+AGG | - | chr1_1:28654816-28654835 | Msa0017290:CDS | 45.0% | |
| !! | GAGATTGGAAGGTTGGTAAG+TGG | - | chr1_1:28654827-28654846 | Msa0017290:CDS | 45.0% |
| !! | GAAGGTTGGTAAGTGGGAAA+AGG | - | chr1_1:28654834-28654853 | Msa0017290:CDS | 45.0% |
| GAAAAGGGCAAGGACTGAAA+TGG | - | chr1_1:28654850-28654869 | Msa0017290:CDS | 45.0% | |
| GACTGAAATGGAGAGTCTTC+CGG | - | chr1_1:28654862-28654881 | Msa0017290:CDS | 45.0% | |
| GTATTACCCTTCTTAGTGGC+CGG | + | chr1_1:28654884-28654903 | None:intergenic | 45.0% | |
| ! | CATTTTCCCAATGTTGCCTC+AGG | + | chr1_1:28654941-28654960 | None:intergenic | 45.0% |
| CTCAACTCATGATAGGAAGG+AGG | + | chr1_1:28655127-28655146 | None:intergenic | 45.0% | |
| AAGGCGGAAGCAGACAAATA+TGG | - | chr1_1:28655202-28655221 | Msa0017290:CDS | 45.0% | |
| ! | CTTTGTATCGGTCCAACCAT+CGG | + | chr1_1:28655242-28655261 | None:intergenic | 45.0% |
| GATGGTTGGACCGATACAAA+GGG | - | chr1_1:28655241-28655260 | Msa0017290:CDS | 45.0% | |
| GCTTCCTCAGAAGTGAAAAC+CGG | - | chr1_1:28655328-28655347 | Msa0017290:intron | 45.0% | |
| AACATAATTGGCCCCGTTGT+CGG | + | chr1_1:28655425-28655444 | None:intergenic | 45.0% | |
| ! | CAACGGGGCCAATTATGTTT+TGG | - | chr1_1:28655426-28655445 | Msa0017290:intron | 45.0% |
| !!! | ATTTTTGGTCTCGCTGCTTG+AGG | + | chr1_1:28655553-28655572 | None:intergenic | 45.0% |
| CCACTCTTGAGAAGTGAACA+TGG | + | chr1_1:28655821-28655840 | None:intergenic | 45.0% | |
| CCATGTTCACTTCTCAAGAG+TGG | - | chr1_1:28655818-28655837 | Msa0017290:intron | 45.0% | |
| AGAAGTTGCCTTCTTACCCT+TGG | + | chr1_1:28655869-28655888 | None:intergenic | 45.0% | |
| ! | ATCAAGCAATGGTGGGAGTA+AGG | - | chr1_1:28656007-28656026 | Msa0017290:CDS | 45.0% |
| TCCTTGAGATTGTTGACAGG+AGG | - | chr1_1:28656079-28656098 | Msa0017290:CDS | 45.0% | |
| ACCTCCTGTCAACAATCTCA+AGG | + | chr1_1:28656083-28656102 | None:intergenic | 45.0% | |
| TTGAGATTGTTGACAGGAGG+TGG | - | chr1_1:28656082-28656101 | Msa0017290:CDS | 45.0% | |
| TGAGATTGTTGACAGGAGGT+GGG | - | chr1_1:28656083-28656102 | Msa0017290:CDS | 45.0% | |
| AAATGTCCAGCTGCATGCAA+CGG | + | chr1_1:28656126-28656145 | None:intergenic | 45.0% | |
| AGAAGCAATAAGGCACAGAG+AGG | - | chr1_1:28656314-28656333 | Msa0017290:CDS | 45.0% | |
| ! | TGTTGCTTCCTCTATTGGGC+TGG | - | chr1_1:28654526-28654545 | Msa0017290:CDS | 50.0% |
| TGGTTTGACCAGCCCAATAG+AGG | + | chr1_1:28654537-28654556 | None:intergenic | 50.0% | |
| CATCCTATGTCAGGAAGGGT+TGG | + | chr1_1:28654557-28654576 | None:intergenic | 50.0% | |
| CAACCCTTCCTGACATAGGA+TGG | - | chr1_1:28654555-28654574 | Msa0017290:CDS | 50.0% | |
| ! | TGTTTGTTGGAGTCTACGGG+AGG | - | chr1_1:28654632-28654651 | Msa0017290:CDS | 50.0% |
| AGTCTACGGGAGGAATTTCC+AGG | - | chr1_1:28654642-28654661 | Msa0017290:CDS | 50.0% | |
| GTCTACGGGAGGAATTTCCA+GGG | - | chr1_1:28654643-28654662 | Msa0017290:CDS | 50.0% | |
| ! | AGCTTGCTTAACGACACTGG+AGG | - | chr1_1:28654703-28654722 | Msa0017290:CDS | 50.0% |
| TTGCTTAACGACACTGGAGG+AGG | - | chr1_1:28654706-28654725 | Msa0017290:CDS | 50.0% | |
| TGAGGAAGCTAGAGTGGCAA+AGG | - | chr1_1:28654751-28654770 | Msa0017290:CDS | 50.0% | |
| GCAGCACGACTTCAAGAGAT+TGG | - | chr1_1:28654812-28654831 | Msa0017290:CDS | 50.0% | |
| TGGTAAGTGGGAAAAGGGCA+AGG | - | chr1_1:28654840-28654859 | Msa0017290:CDS | 50.0% | |
| AGTCTTCCGGCCACTAAGAA+GGG | - | chr1_1:28654875-28654894 | Msa0017290:CDS | 50.0% | |
| TAGGAAGGAGGCTTCAAGTG+AGG | + | chr1_1:28655115-28655134 | None:intergenic | 50.0% | |
| CGATGGTTGGACCGATACAA+AGG | - | chr1_1:28655240-28655259 | Msa0017290:CDS | 50.0% | |
| !!! | GGGGCCAATTATGTTTTGGC+CGG | - | chr1_1:28655430-28655449 | Msa0017290:intron | 50.0% |
| GTTGAGGGAGAAGGCTGAAA+TGG | - | chr1_1:28655711-28655730 | Msa0017290:intron | 50.0% | |
| AAAGGTGAGTGACGAAGCCA+AGG | - | chr1_1:28655849-28655868 | Msa0017290:intron | 50.0% | |
| AAGGTGAGTGACGAAGCCAA+GGG | - | chr1_1:28655850-28655869 | Msa0017290:intron | 50.0% | |
| TGACGAAGCCAAGGGTAAGA+AGG | - | chr1_1:28655858-28655877 | Msa0017290:intron | 50.0% | |
| GAGATTGTTGACAGGAGGTG+GGG | - | chr1_1:28656084-28656103 | Msa0017290:CDS | 50.0% | |
| GAGTCTTCCGGCCACTAAGA+AGG | - | chr1_1:28654874-28654893 | Msa0017290:CDS | 55.0% | |
| CGAAAGCTGTGTTGTGCAGC+TGG | - | chr1_1:28655396-28655415 | Msa0017290:intron | 55.0% | |
| GTGCAGCTGGTTACCGACAA+CGG | - | chr1_1:28655409-28655428 | Msa0017290:intron | 55.0% | |
| TGCAGCTGGTTACCGACAAC+GGG | - | chr1_1:28655410-28655429 | Msa0017290:intron | 55.0% | |
| CATCATCCGTTGCATGCAGC+TGG | - | chr1_1:28656117-28656136 | Msa0017290:CDS | 55.0% | |
| GAGGATACGCGTACATCTCC+TGG | - | chr1_1:28656333-28656352 | Msa0017290:CDS | 55.0% | |
| GCAGCTGGTTACCGACAACG+GGG | - | chr1_1:28655411-28655430 | Msa0017290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28654461 | 28656362 | 28654461 | ID=Msa0017290;Name=Msa0017290 |
| chr1_1 | mRNA | 28654461 | 28656362 | 28654461 | ID=Msa0017290-mRNA-1;Parent=Msa0017290;Name=Msa0017290-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|422 |
| chr1_1 | exon | 28655915 | 28656362 | 28655915 | ID=Msa0017290-mRNA-1:exon:9573;Parent=Msa0017290-mRNA-1 |
| chr1_1 | exon | 28654461 | 28655281 | 28654461 | ID=Msa0017290-mRNA-1:exon:9572;Parent=Msa0017290-mRNA-1 |
| chr1_1 | CDS | 28655915 | 28656362 | 28655915 | ID=Msa0017290-mRNA-1:cds;Parent=Msa0017290-mRNA-1 |
| chr1_1 | CDS | 28654461 | 28655281 | 28654461 | ID=Msa0017290-mRNA-1:cds;Parent=Msa0017290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
