Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065500 | PNY14079.1 | 65.660 | 265 | 91 | 0 | 150 | 414 | 266 | 530 | 4.72e-119 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065500 | A0A2K3PFL3 | 65.660 | 265 | 91 | 0 | 150 | 414 | 266 | 530 | 2.25e-119 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa0065500 | 0.836023 | 1.193235e-56 | -8.615850e-47 |
| Msa0017290 | Msa0065500 | 0.967888 | 6.672551e-128 | -8.615850e-47 |
| Msa0065500 | Msa0087010 | 0.837205 | 5.964663e-57 | -8.615850e-47 |
| Msa0065500 | Msa0087020 | 0.966657 | 3.247095e-126 | -8.615850e-47 |
| Msa0065500 | Msa0157210 | 0.888687 | 4.733917e-73 | -8.615850e-47 |
| Msa0065500 | Msa0520410 | 0.808105 | 3.647197e-50 | -8.615850e-47 |
| Msa0065500 | Msa0606960 | 0.896273 | 4.320888e-76 | -8.615850e-47 |
| Msa0065500 | Msa1009560 | 0.812123 | 4.965856e-51 | -8.615850e-47 |
| Msa0065500 | Msa1179770 | 0.806788 | 6.939080e-50 | -8.615850e-47 |
| Msa0065500 | Msa1192990 | 0.841589 | 4.335235e-58 | -8.615850e-47 |
| Msa0065500 | Msa1306260 | 0.805585 | 1.243209e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065500 | MtrunA17_Chr6g0476101 | 39.024 | 246 | 145 | 3 | 150 | 394 | 48 | 289 | 1.03e-58 | 193 |
| Msa0065500 | MtrunA17_Chr3g0112101 | 35.581 | 267 | 169 | 3 | 150 | 415 | 348 | 612 | 4.39e-52 | 186 |
| Msa0065500 | MtrunA17_Chr6g0455641 | 31.298 | 262 | 166 | 3 | 150 | 404 | 222 | 476 | 7.04e-40 | 150 |
| Msa0065500 | MtrunA17_Chr6g0454041 | 31.873 | 251 | 169 | 2 | 155 | 404 | 335 | 584 | 2.54e-38 | 147 |
| Msa0065500 | MtrunA17_Chr2g0302451 | 30.970 | 268 | 178 | 4 | 150 | 413 | 454 | 718 | 1.54e-36 | 142 |
| Msa0065500 | MtrunA17_Chr6g0454051 | 28.458 | 253 | 175 | 4 | 157 | 404 | 287 | 538 | 2.08e-34 | 135 |
| Msa0065500 | MtrunA17_Chr3g0126261 | 30.859 | 256 | 173 | 4 | 160 | 413 | 177 | 430 | 7.45e-34 | 133 |
| Msa0065500 | MtrunA17_Chr6g0454061 | 27.099 | 262 | 183 | 5 | 150 | 404 | 223 | 483 | 7.16e-33 | 130 |
| Msa0065500 | MtrunA17_Chr2g0323591 | 35.922 | 103 | 61 | 3 | 15 | 114 | 21 | 121 | 2.84e-13 | 67.8 |
| Msa0065500 | MtrunA17_Chr6g0476241 | 41.772 | 79 | 44 | 2 | 36 | 113 | 24 | 101 | 8.27e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065500 | AT3G22220.3 | 36.090 | 266 | 164 | 4 | 150 | 414 | 338 | 598 | 2.96e-48 | 176 |
| Msa0065500 | AT3G22220.4 | 36.090 | 266 | 164 | 4 | 150 | 414 | 338 | 598 | 2.96e-48 | 176 |
| Msa0065500 | AT3G22220.2 | 36.090 | 266 | 164 | 4 | 150 | 414 | 338 | 598 | 2.96e-48 | 176 |
| Msa0065500 | AT3G22220.1 | 36.090 | 266 | 164 | 4 | 150 | 414 | 338 | 598 | 2.96e-48 | 176 |
| Msa0065500 | AT5G33406.1 | 41.346 | 208 | 120 | 1 | 215 | 422 | 11 | 216 | 6.00e-48 | 171 |
| Msa0065500 | AT4G15020.2 | 35.714 | 266 | 167 | 4 | 150 | 414 | 342 | 604 | 3.30e-47 | 173 |
| Msa0065500 | AT4G15020.1 | 35.714 | 266 | 167 | 4 | 150 | 414 | 342 | 604 | 3.30e-47 | 173 |
| Msa0065500 | AT3G17450.2 | 30.802 | 237 | 159 | 4 | 148 | 380 | 448 | 683 | 1.63e-37 | 145 |
| Msa0065500 | AT3G17450.1 | 30.802 | 237 | 159 | 4 | 148 | 380 | 448 | 683 | 1.63e-37 | 145 |
| Msa0065500 | AT1G79740.3 | 31.559 | 263 | 173 | 5 | 160 | 421 | 130 | 386 | 4.22e-35 | 136 |
| Msa0065500 | AT1G79740.2 | 31.559 | 263 | 173 | 5 | 160 | 421 | 130 | 386 | 4.22e-35 | 136 |
| Msa0065500 | AT1G79740.1 | 31.559 | 263 | 173 | 5 | 160 | 421 | 263 | 519 | 8.83e-35 | 137 |
| Msa0065500 | AT1G79740.4 | 31.559 | 263 | 173 | 5 | 160 | 421 | 263 | 519 | 8.83e-35 | 137 |
| Msa0065500 | AT3G13030.3 | 26.019 | 319 | 209 | 7 | 115 | 422 | 160 | 462 | 4.41e-30 | 122 |
| Msa0065500 | AT3G13030.4 | 26.019 | 319 | 209 | 7 | 115 | 422 | 160 | 462 | 4.41e-30 | 122 |
| Msa0065500 | AT3G13030.1 | 26.019 | 319 | 209 | 7 | 115 | 422 | 160 | 462 | 4.41e-30 | 122 |
| Msa0065500 | AT3G13030.2 | 26.019 | 319 | 209 | 7 | 115 | 422 | 160 | 462 | 4.41e-30 | 122 |
| Msa0065500 | AT3G13020.1 | 29.478 | 268 | 163 | 7 | 150 | 407 | 270 | 521 | 1.79e-28 | 118 |
| Msa0065500 | AT1G36095.1 | 27.881 | 269 | 144 | 6 | 55 | 273 | 29 | 297 | 1.30e-23 | 100 |
| Msa0065500 | AT3G13030.5 | 23.765 | 324 | 177 | 8 | 115 | 422 | 160 | 429 | 4.62e-21 | 95.9 |
| Msa0065500 | AT3G13010.1 | 23.887 | 247 | 174 | 7 | 159 | 404 | 252 | 485 | 1.94e-15 | 79.0 |
Find 100 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCTGTTGCTTCCTCTAT+TGG | 0.169469 | 1_2:+27866032 | Msa0065500:CDS |
| TCAAGAGTGGTCAGACTTAA+AGG | 0.233829 | 1_2:+27867342 | Msa0065500:CDS |
| TTGTTCTTCAAGTCGCATTT+TGG | 0.258584 | 1_2:+27867401 | Msa0065500:CDS |
| AATCTGTTGCTTCCTCTATT+GGG | 0.309777 | 1_2:+27866033 | Msa0065500:CDS |
| TTTCATCTATAACCATTCTT+TGG | 0.337391 | 1_2:+27867189 | Msa0065500:CDS |
| TAGAAAGCTTTCTTCTTCAA+TGG | 0.342613 | 1_2:+27867735 | Msa0065500:CDS |
| TTAAATTGGCAGAAGCAATA+AGG | 0.345705 | 1_2:+27867815 | Msa0065500:CDS |
| GGATAAGTATAGGGCTAGTT+CGG | 0.346870 | 1_2:+27867786 | Msa0065500:CDS |
| AGTCTACGGGAGGAATTTCC+AGG | 0.367684 | 1_2:+27866153 | Msa0065500:CDS |
| TGATGACATCCATGCAGATT+TGG | 0.370501 | 1_2:+27867765 | Msa0065500:CDS |
| GTTACAACCTTCTTTACTCT+TGG | 0.375352 | 1_2:-27867145 | None:intergenic |
| GTTTATGCTCTTAAAGCTAT+GGG | 0.386704 | 1_2:+27867433 | Msa0065500:CDS |
| TAGTTCGGGTAACTTTAAAT+TGG | 0.394568 | 1_2:+27867801 | Msa0065500:CDS |
| GTTGAGGGAGAAGGCTGAAA+TGG | 0.395558 | 1_2:+27867222 | Msa0065500:CDS |
| CACGTGTGATTATTGTTTGT+TGG | 0.404102 | 1_2:+27866130 | Msa0065500:CDS |
| TGTTTATGCTCTTAAAGCTA+TGG | 0.411079 | 1_2:+27867432 | Msa0065500:CDS |
| TGCAGATTTGGATAAGTATA+GGG | 0.412113 | 1_2:+27867777 | Msa0065500:CDS |
| ATGCAGATTTGGATAAGTAT+AGG | 0.415922 | 1_2:+27867776 | Msa0065500:CDS |
| GATGGAAGTATAACAGTGTA+AGG | 0.417281 | 1_2:+27866084 | Msa0065500:CDS |
| GATTTAATGCTAGAAAAGAT+TGG | 0.417475 | 1_2:+27867115 | Msa0065500:CDS |
| TTGAGATTGTTGACAGGAGG+TGG | 0.418360 | 1_2:+27867593 | Msa0065500:CDS |
| GACTGAAATGGAGAGTCTTC+CGG | 0.425050 | 1_2:+27866373 | Msa0065500:CDS |
| TTATTGTTTGTTGGAGTCTA+CGG | 0.429758 | 1_2:+27866139 | Msa0065500:CDS |
| CAGGGCCAAACAAAATCAAA+TGG | 0.435077 | 1_2:+27866172 | Msa0065500:CDS |
| GATAAGTATAGGGCTAGTTC+GGG | 0.441052 | 1_2:+27867787 | Msa0065500:CDS |
| ATCAAGCAATGGTGGGAGTA+AGG | 0.451264 | 1_2:+27867518 | Msa0065500:CDS |
| GAAGGTTGGTAAGTGGGAAA+AGG | 0.452327 | 1_2:+27866345 | Msa0065500:CDS |
| TGTTGCTTCCTCTATTGGGC+TGG | 0.453869 | 1_2:+27866037 | Msa0065500:CDS |
| CAAAATCAAATGGGAGTGAC+AGG | 0.455222 | 1_2:+27866182 | Msa0065500:CDS |
| CATCATCCGTTGCATGCAGC+TGG | 0.456532 | 1_2:+27867628 | Msa0065500:CDS |
| TCACCGGCATTAGAAGATAA+TGG | 0.457229 | 1_2:-27865996 | None:intergenic |
| AAGGTTGGTAAGTGGGAAAA+GGG | 0.459998 | 1_2:+27866346 | Msa0065500:CDS |
| ATCTTGAGCCTCATTTGAAA+CGG | 0.462692 | 1_2:-27866291 | None:intergenic |
| GCAGCACGACTTCAAGAGAT+TGG | 0.466842 | 1_2:+27866323 | Msa0065500:CDS |
| GAGTCTTCCGGCCACTAAGA+AGG | 0.470821 | 1_2:+27866385 | Msa0065500:CDS |
| AGAAGTTGCCTTCTTACCCT+TGG | 0.474519 | 1_2:-27867377 | None:intergenic |
| AGCCTAAGTACTCTTATAAG+AGG | 0.478383 | 1_2:-27867457 | None:intergenic |
| TGGTTTGACCAGCCCAATAG+AGG | 0.478495 | 1_2:-27866045 | None:intergenic |
| GGATTGTTATAAAAGTGCTT+CGG | 0.481643 | 1_2:-27867664 | None:intergenic |
| TATTGTTTGTTGGAGTCTAC+GGG | 0.483113 | 1_2:+27866140 | Msa0065500:CDS |
| CAAACTTTCTTCAATTGCAA+AGG | 0.488401 | 1_2:+27867278 | Msa0065500:CDS |
| CATCCTATGTCAGGAAGGGT+TGG | 0.491956 | 1_2:-27866065 | None:intergenic |
| GAAAAGGGCAAGGACTGAAA+TGG | 0.492542 | 1_2:+27866361 | Msa0065500:CDS |
| ACACAAGGAATTAGTCTTGT+CGG | 0.492872 | 1_2:+27867166 | Msa0065500:CDS |
| CGAAATAGTAGTCACTTACC+AGG | 0.504939 | 1_2:-27867862 | None:intergenic |
| TTATACTTCCATCCTATGTC+AGG | 0.505546 | 1_2:-27866074 | None:intergenic |
| AGATTGGAAGGTTGGTAAGT+GGG | 0.515155 | 1_2:+27866339 | Msa0065500:CDS |
| ACTTCAAGAGATTGGAAGGT+TGG | 0.517951 | 1_2:+27866331 | Msa0065500:CDS |
| GAGGATACGCGTACATCTCC+TGG | 0.518363 | 1_2:+27867844 | Msa0065500:CDS |
| CTGTCAACAATCTCAAGGAT+TGG | 0.518832 | 1_2:-27867586 | None:intergenic |
| ACTAAGAAGGGTAATACAAA+AGG | 0.520152 | 1_2:+27866398 | Msa0065500:CDS |
| TTTGAATTTGTTGAGGGAGA+AGG | 0.521056 | 1_2:+27867213 | Msa0065500:CDS |
| GGTGAAATCCGTTTCAAATG+AGG | 0.523303 | 1_2:+27866283 | Msa0065500:CDS |
| ACAAATTCAAAACCAAAGAA+TGG | 0.528552 | 1_2:-27867201 | None:intergenic |
| TGATATATGAAACTCATAGC+AGG | 0.529944 | 1_2:-27867499 | None:intergenic |
| TAAAGCTTGCTTAACGACAC+TGG | 0.531131 | 1_2:+27866211 | Msa0065500:CDS |
| GTATTACCCTTCTTAGTGGC+CGG | 0.542772 | 1_2:-27866392 | None:intergenic |
| TGACGAAGCCAAGGGTAAGA+AGG | 0.542807 | 1_2:+27867369 | Msa0065500:CDS |
| TCCTTGAGATTGTTGACAGG+AGG | 0.550735 | 1_2:+27867590 | Msa0065500:CDS |
| AAACCAACCCTTCCTGACAT+AGG | 0.551809 | 1_2:+27866062 | Msa0065500:CDS |
| TTTCATATATCAAGCAATGG+TGG | 0.551820 | 1_2:+27867510 | Msa0065500:CDS |
| AAAGGTGAGTGACGAAGCCA+AGG | 0.551906 | 1_2:+27867360 | Msa0065500:CDS |
| CACGACTTCAAGAGATTGGA+AGG | 0.552643 | 1_2:+27866327 | Msa0065500:CDS |
| CAACCCTTCCTGACATAGGA+TGG | 0.554812 | 1_2:+27866066 | Msa0065500:CDS |
| TTCATATATCAAGCAATGGT+GGG | 0.555106 | 1_2:+27867511 | Msa0065500:CDS |
| GAGATTGGAAGGTTGGTAAG+TGG | 0.556292 | 1_2:+27866338 | Msa0065500:CDS |
| AGGGCCAAACAAAATCAAAT+GGG | 0.560257 | 1_2:+27866173 | Msa0065500:CDS |
| AGTCTTCCGGCCACTAAGAA+GGG | 0.561768 | 1_2:+27866386 | Msa0065500:CDS |
| TGAGATTGTTGACAGGAGGT+GGG | 0.563133 | 1_2:+27867594 | Msa0065500:CDS |
| GCACCATTATCTTCTAATGC+CGG | 0.566676 | 1_2:+27865993 | Msa0065500:CDS |
| AGCTAATGAGGAAGCTAGAG+TGG | 0.569343 | 1_2:+27866256 | Msa0065500:CDS |
| CAATCCTTGAGATTGTTGAC+AGG | 0.573892 | 1_2:+27867587 | Msa0065500:CDS |
| TGAGGAAGCTAGAGTGGCAA+AGG | 0.574189 | 1_2:+27866262 | Msa0065500:CDS |
| CCACTCTTGAGAAGTGAACA+TGG | 0.582860 | 1_2:-27867329 | None:intergenic |
| TCTTATAAGAGTACTTAGGC+TGG | 0.583735 | 1_2:+27867459 | Msa0065500:CDS |
| ACCTCCTGTCAACAATCTCA+AGG | 0.585500 | 1_2:-27867591 | None:intergenic |
| TATACTTATCCAAATCTGCA+TGG | 0.585773 | 1_2:-27867774 | None:intergenic |
| ACTTCCATCCTATGTCAGGA+AGG | 0.587027 | 1_2:-27866070 | None:intergenic |
| CTTCCATCCTATGTCAGGAA+GGG | 0.587261 | 1_2:-27866069 | None:intergenic |
| TCTATACAATGTGCTGCACA+TGG | 0.597200 | 1_2:-27867094 | None:intergenic |
| TTGTGCAGCAGAAGAATCAC+CGG | 0.597962 | 1_2:-27866012 | None:intergenic |
| TGGTAAGTGGGAAAAGGGCA+AGG | 0.600199 | 1_2:+27866351 | Msa0065500:CDS |
| TGAGGCTCAAGATGATGAAG+AGG | 0.609931 | 1_2:+27866301 | Msa0065500:CDS |
| AAATGTCCAGCTGCATGCAA+CGG | 0.610121 | 1_2:-27867634 | None:intergenic |
| TGATTAGACATGGAGTCACA+AGG | 0.610919 | 1_2:+27867248 | Msa0065500:CDS |
| TTGCTTAACGACACTGGAGG+AGG | 0.611100 | 1_2:+27866217 | Msa0065500:CDS |
| GATATATGAAACTCATAGCA+GGG | 0.619541 | 1_2:-27867498 | None:intergenic |
| ATGGAAGTATAACAGTGTAA+GGG | 0.622725 | 1_2:+27866085 | Msa0065500:CDS |
| GAGATTGTTGACAGGAGGTG+GGG | 0.629952 | 1_2:+27867595 | Msa0065500:CDS |
| CCATGTTCACTTCTCAAGAG+TGG | 0.631953 | 1_2:+27867329 | Msa0065500:CDS |
| GAGTTTCATATATCAAGCAA+TGG | 0.636888 | 1_2:+27867507 | Msa0065500:CDS |
| TTTATGCTCTTAAAGCTATG+GGG | 0.638889 | 1_2:+27867434 | Msa0065500:CDS |
| GAAATGGAGTTGATTAGACA+TGG | 0.642103 | 1_2:+27867238 | Msa0065500:CDS |
| GTCTACGGGAGGAATTTCCA+GGG | 0.658920 | 1_2:+27866154 | Msa0065500:CDS |
| GGCCTCTTATAAGAGTACTT+AGG | 0.659644 | 1_2:+27867455 | Msa0065500:CDS |
| GTAAAGAAGGTTGTAACACA+AGG | 0.668251 | 1_2:+27867151 | Msa0065500:CDS |
| TGTTTGTTGGAGTCTACGGG+AGG | 0.672619 | 1_2:+27866143 | Msa0065500:CDS |
| AGAAGCAATAAGGCACAGAG+AGG | 0.676918 | 1_2:+27867825 | Msa0065500:CDS |
| AAGGTGAGTGACGAAGCCAA+GGG | 0.690496 | 1_2:+27867361 | Msa0065500:CDS |
| AGCTTGCTTAACGACACTGG+AGG | 0.743395 | 1_2:+27866214 | Msa0065500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAATTAAGAAAAAATT+TGG | + | chr1_2:27867541-27867560 | Msa0065500:CDS | 10.0% |
| !! | AATCAAATTAAGAAAAAATT+TGG | + | chr1_2:27867541-27867560 | Msa0065500:CDS | 10.0% |
| !!! | TTGGAAAAATATTTTTGTAA+AGG | + | chr1_2:27867031-27867050 | Msa0065500:intron | 15.0% |
| !!! | TTGGAAAAATATTTTTGTAA+AGG | + | chr1_2:27867031-27867050 | Msa0065500:intron | 15.0% |
| !! | TAAAAGAACATTAAATCCAA+TGG | - | chr1_2:27866425-27866444 | None:intergenic | 20.0% |
| !! | AAGTATTAAAGATAGAGATA+AGG | + | chr1_2:27866481-27866500 | Msa0065500:intron | 20.0% |
| !! | ATCAAAAAGTTTCAAATTGA+TGG | + | chr1_2:27866577-27866596 | Msa0065500:intron | 20.0% |
| !!! | AAAAGCAATTTTTGATATGT+TGG | + | chr1_2:27866862-27866881 | Msa0065500:intron | 20.0% |
| !! | GTAATAATACATGATATGTT+TGG | - | chr1_2:27866998-27867017 | None:intergenic | 20.0% |
| !! | TATTACGTTCTTTAATTGTT+TGG | + | chr1_2:27867012-27867031 | Msa0065500:intron | 20.0% |
| !! | TAAAAGAACATTAAATCCAA+TGG | - | chr1_2:27866425-27866444 | None:intergenic | 20.0% |
| !! | AAGTATTAAAGATAGAGATA+AGG | + | chr1_2:27866481-27866500 | Msa0065500:intron | 20.0% |
| !! | ATCAAAAAGTTTCAAATTGA+TGG | + | chr1_2:27866577-27866596 | Msa0065500:intron | 20.0% |
| !!! | AAAAGCAATTTTTGATATGT+TGG | + | chr1_2:27866862-27866881 | Msa0065500:intron | 20.0% |
| !! | GTAATAATACATGATATGTT+TGG | - | chr1_2:27866998-27867017 | None:intergenic | 20.0% |
| !! | TATTACGTTCTTTAATTGTT+TGG | + | chr1_2:27867012-27867031 | Msa0065500:intron | 20.0% |
| !!! | ATTGATTTTAAGAGCTAATG+AGG | + | chr1_2:27866244-27866263 | Msa0065500:CDS | 25.0% |
| ! | AAAAAAAGCGAGTTATATAC+TGG | - | chr1_2:27866526-27866545 | None:intergenic | 25.0% |
| !!! | ACTCGCTTTTTTTATCTAAA+TGG | + | chr1_2:27866533-27866552 | Msa0065500:intron | 25.0% |
| !! | AAATTGATGGTTGAAGAAAT+TGG | + | chr1_2:27866590-27866609 | Msa0065500:intron | 25.0% |
| ! | GGATAATACTAATCAAATGT+TGG | + | chr1_2:27866682-27866701 | Msa0065500:intron | 25.0% |
| !!! | CATATCAAAAATTGCTTTTC+CGG | - | chr1_2:27866861-27866880 | None:intergenic | 25.0% |
| !! | ATATGTTGGATGAATTTGTT+GGG | + | chr1_2:27866876-27866895 | Msa0065500:intron | 25.0% |
| ! | GATTTAATGCTAGAAAAGAT+TGG | + | chr1_2:27867115-27867134 | Msa0065500:CDS | 25.0% |
| ! | AAAAATTCCAAGAGTAAAGA+AGG | + | chr1_2:27867138-27867157 | Msa0065500:CDS | 25.0% |
| ! | TTTCATCTATAACCATTCTT+TGG | + | chr1_2:27867189-27867208 | Msa0065500:CDS | 25.0% |
| ! | ACAAATTCAAAACCAAAGAA+TGG | - | chr1_2:27867204-27867223 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGAATTTGTTGA+GGG | + | chr1_2:27867207-27867226 | Msa0065500:CDS | 25.0% |
| !!! | TGGTTCTAATTTTTTGTCTT+AGG | - | chr1_2:27867312-27867331 | None:intergenic | 25.0% |
| ! | AGATAAAAATGATGCGTTAT+TGG | + | chr1_2:27867693-27867712 | Msa0065500:CDS | 25.0% |
| !!! | ATTGATTTTAAGAGCTAATG+AGG | + | chr1_2:27866244-27866263 | Msa0065500:CDS | 25.0% |
| ! | AAAAAAAGCGAGTTATATAC+TGG | - | chr1_2:27866526-27866545 | None:intergenic | 25.0% |
| !!! | ACTCGCTTTTTTTATCTAAA+TGG | + | chr1_2:27866533-27866552 | Msa0065500:intron | 25.0% |
| !! | AAATTGATGGTTGAAGAAAT+TGG | + | chr1_2:27866590-27866609 | Msa0065500:intron | 25.0% |
| ! | GGATAATACTAATCAAATGT+TGG | + | chr1_2:27866682-27866701 | Msa0065500:intron | 25.0% |
| !!! | CATATCAAAAATTGCTTTTC+CGG | - | chr1_2:27866861-27866880 | None:intergenic | 25.0% |
| !! | ATATGTTGGATGAATTTGTT+GGG | + | chr1_2:27866876-27866895 | Msa0065500:intron | 25.0% |
| ! | GATTTAATGCTAGAAAAGAT+TGG | + | chr1_2:27867115-27867134 | Msa0065500:CDS | 25.0% |
| ! | AAAAATTCCAAGAGTAAAGA+AGG | + | chr1_2:27867138-27867157 | Msa0065500:CDS | 25.0% |
| ! | TTTCATCTATAACCATTCTT+TGG | + | chr1_2:27867189-27867208 | Msa0065500:CDS | 25.0% |
| ! | ACAAATTCAAAACCAAAGAA+TGG | - | chr1_2:27867204-27867223 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGAATTTGTTGA+GGG | + | chr1_2:27867207-27867226 | Msa0065500:CDS | 25.0% |
| !!! | TGGTTCTAATTTTTTGTCTT+AGG | - | chr1_2:27867312-27867331 | None:intergenic | 25.0% |
| ! | AGATAAAAATGATGCGTTAT+TGG | + | chr1_2:27867693-27867712 | Msa0065500:CDS | 25.0% |
| ! | ATGGAAGTATAACAGTGTAA+GGG | + | chr1_2:27866085-27866104 | Msa0065500:CDS | 30.0% |
| ! | TTATTGTTTGTTGGAGTCTA+CGG | + | chr1_2:27866139-27866158 | Msa0065500:CDS | 30.0% |
| ! | TTTTGTATTACCCTTCTTAG+TGG | - | chr1_2:27866399-27866418 | None:intergenic | 30.0% |
| ACTAAGAAGGGTAATACAAA+AGG | + | chr1_2:27866398-27866417 | Msa0065500:CDS | 30.0% | |
| ! | AATGTTCTTTTAAACACCTG+AGG | + | chr1_2:27866433-27866452 | Msa0065500:intron | 30.0% |
| GTTGAAGAAATTGGTCAATA+TGG | + | chr1_2:27866599-27866618 | Msa0065500:intron | 30.0% | |
| GATATGTTGGATGAATTTGT+TGG | + | chr1_2:27866875-27866894 | Msa0065500:intron | 30.0% | |
| !! | TATGTTGGATGAATTTGTTG+GGG | + | chr1_2:27866877-27866896 | Msa0065500:intron | 30.0% |
| !!! | CTTTGGTTTTGAATTTGTTG+AGG | + | chr1_2:27867206-27867225 | Msa0065500:CDS | 30.0% |
| CAAACTTTCTTCAATTGCAA+AGG | + | chr1_2:27867278-27867297 | Msa0065500:CDS | 30.0% | |
| TGTTTATGCTCTTAAAGCTA+TGG | + | chr1_2:27867432-27867451 | Msa0065500:CDS | 30.0% | |
| GTTTATGCTCTTAAAGCTAT+GGG | + | chr1_2:27867433-27867452 | Msa0065500:CDS | 30.0% | |
| TTTATGCTCTTAAAGCTATG+GGG | + | chr1_2:27867434-27867453 | Msa0065500:CDS | 30.0% | |
| GATATATGAAACTCATAGCA+GGG | - | chr1_2:27867501-27867520 | None:intergenic | 30.0% | |
| TGATATATGAAACTCATAGC+AGG | - | chr1_2:27867502-27867521 | None:intergenic | 30.0% | |
| GAGTTTCATATATCAAGCAA+TGG | + | chr1_2:27867507-27867526 | Msa0065500:CDS | 30.0% | |
| TTTCATATATCAAGCAATGG+TGG | + | chr1_2:27867510-27867529 | Msa0065500:CDS | 30.0% | |
| TTCATATATCAAGCAATGGT+GGG | + | chr1_2:27867511-27867530 | Msa0065500:CDS | 30.0% | |
| !! | GGATTGTTATAAAAGTGCTT+CGG | - | chr1_2:27867667-27867686 | None:intergenic | 30.0% |
| !! | GCATCATTTTTATCTATTGC+TGG | - | chr1_2:27867688-27867707 | None:intergenic | 30.0% |
| AAAAATGATGCGTTATTGGA+TGG | + | chr1_2:27867697-27867716 | Msa0065500:CDS | 30.0% | |
| TAGAAAGCTTTCTTCTTCAA+TGG | + | chr1_2:27867735-27867754 | Msa0065500:CDS | 30.0% | |
| TATACTTATCCAAATCTGCA+TGG | - | chr1_2:27867777-27867796 | None:intergenic | 30.0% | |
| ATGCAGATTTGGATAAGTAT+AGG | + | chr1_2:27867776-27867795 | Msa0065500:CDS | 30.0% | |
| TGCAGATTTGGATAAGTATA+GGG | + | chr1_2:27867777-27867796 | Msa0065500:CDS | 30.0% | |
| TAGTTCGGGTAACTTTAAAT+TGG | + | chr1_2:27867801-27867820 | Msa0065500:CDS | 30.0% | |
| TTAAATTGGCAGAAGCAATA+AGG | + | chr1_2:27867815-27867834 | Msa0065500:CDS | 30.0% | |
| ! | ATGGAAGTATAACAGTGTAA+GGG | + | chr1_2:27866085-27866104 | Msa0065500:CDS | 30.0% |
| ! | TTATTGTTTGTTGGAGTCTA+CGG | + | chr1_2:27866139-27866158 | Msa0065500:CDS | 30.0% |
| ! | TTTTGTATTACCCTTCTTAG+TGG | - | chr1_2:27866399-27866418 | None:intergenic | 30.0% |
| ACTAAGAAGGGTAATACAAA+AGG | + | chr1_2:27866398-27866417 | Msa0065500:CDS | 30.0% | |
| ! | AATGTTCTTTTAAACACCTG+AGG | + | chr1_2:27866433-27866452 | Msa0065500:intron | 30.0% |
| GTTGAAGAAATTGGTCAATA+TGG | + | chr1_2:27866599-27866618 | Msa0065500:intron | 30.0% | |
| GATATGTTGGATGAATTTGT+TGG | + | chr1_2:27866875-27866894 | Msa0065500:intron | 30.0% | |
| !! | TATGTTGGATGAATTTGTTG+GGG | + | chr1_2:27866877-27866896 | Msa0065500:intron | 30.0% |
| !!! | CTTTGGTTTTGAATTTGTTG+AGG | + | chr1_2:27867206-27867225 | Msa0065500:CDS | 30.0% |
| CAAACTTTCTTCAATTGCAA+AGG | + | chr1_2:27867278-27867297 | Msa0065500:CDS | 30.0% | |
| TGTTTATGCTCTTAAAGCTA+TGG | + | chr1_2:27867432-27867451 | Msa0065500:CDS | 30.0% | |
| GTTTATGCTCTTAAAGCTAT+GGG | + | chr1_2:27867433-27867452 | Msa0065500:CDS | 30.0% | |
| TTTATGCTCTTAAAGCTATG+GGG | + | chr1_2:27867434-27867453 | Msa0065500:CDS | 30.0% | |
| GATATATGAAACTCATAGCA+GGG | - | chr1_2:27867501-27867520 | None:intergenic | 30.0% | |
| TGATATATGAAACTCATAGC+AGG | - | chr1_2:27867502-27867521 | None:intergenic | 30.0% | |
| GAGTTTCATATATCAAGCAA+TGG | + | chr1_2:27867507-27867526 | Msa0065500:CDS | 30.0% | |
| TTTCATATATCAAGCAATGG+TGG | + | chr1_2:27867510-27867529 | Msa0065500:CDS | 30.0% | |
| TTCATATATCAAGCAATGGT+GGG | + | chr1_2:27867511-27867530 | Msa0065500:CDS | 30.0% | |
| !! | GGATTGTTATAAAAGTGCTT+CGG | - | chr1_2:27867667-27867686 | None:intergenic | 30.0% |
| !! | GCATCATTTTTATCTATTGC+TGG | - | chr1_2:27867688-27867707 | None:intergenic | 30.0% |
| AAAAATGATGCGTTATTGGA+TGG | + | chr1_2:27867697-27867716 | Msa0065500:CDS | 30.0% | |
| TAGAAAGCTTTCTTCTTCAA+TGG | + | chr1_2:27867735-27867754 | Msa0065500:CDS | 30.0% | |
| TATACTTATCCAAATCTGCA+TGG | - | chr1_2:27867777-27867796 | None:intergenic | 30.0% | |
| ATGCAGATTTGGATAAGTAT+AGG | + | chr1_2:27867776-27867795 | Msa0065500:CDS | 30.0% | |
| TGCAGATTTGGATAAGTATA+GGG | + | chr1_2:27867777-27867796 | Msa0065500:CDS | 30.0% | |
| TAGTTCGGGTAACTTTAAAT+TGG | + | chr1_2:27867801-27867820 | Msa0065500:CDS | 30.0% | |
| TTAAATTGGCAGAAGCAATA+AGG | + | chr1_2:27867815-27867834 | Msa0065500:CDS | 30.0% | |
| ! | AATCTGTTGCTTCCTCTATT+GGG | + | chr1_2:27866033-27866052 | Msa0065500:CDS | 35.0% |
| TTATACTTCCATCCTATGTC+AGG | - | chr1_2:27866077-27866096 | None:intergenic | 35.0% | |
| ! | GATGGAAGTATAACAGTGTA+AGG | + | chr1_2:27866084-27866103 | Msa0065500:CDS | 35.0% |
| CACGTGTGATTATTGTTTGT+TGG | + | chr1_2:27866130-27866149 | Msa0065500:CDS | 35.0% | |
| ! | TATTGTTTGTTGGAGTCTAC+GGG | + | chr1_2:27866140-27866159 | Msa0065500:CDS | 35.0% |
| AGGGCCAAACAAAATCAAAT+GGG | + | chr1_2:27866173-27866192 | Msa0065500:CDS | 35.0% | |
| !! | CACTCCCATTTGATTTTGTT+TGG | - | chr1_2:27866180-27866199 | None:intergenic | 35.0% |
| ATCTTGAGCCTCATTTGAAA+CGG | - | chr1_2:27866294-27866313 | None:intergenic | 35.0% | |
| TTTCTCAACTCATGATAGGA+AGG | - | chr1_2:27866641-27866660 | None:intergenic | 35.0% | |
| CCAACTCTTTGTTAAGACAT+GGG | - | chr1_2:27866664-27866683 | None:intergenic | 35.0% | |
| TCCAACTCTTTGTTAAGACA+TGG | - | chr1_2:27866665-27866684 | None:intergenic | 35.0% | |
| TCAAATGTTGGAGACTAACA+AGG | + | chr1_2:27866694-27866713 | Msa0065500:intron | 35.0% | |
| CAATGTTCTTCCCTTTGTAT+CGG | - | chr1_2:27866765-27866784 | None:intergenic | 35.0% | |
| TTAATAAACATAGTGCCTGG+CGG | - | chr1_2:27866809-27866828 | None:intergenic | 35.0% | |
| CTCTTAATAAACATAGTGCC+TGG | - | chr1_2:27866812-27866831 | None:intergenic | 35.0% | |
| GAAGAAAGTAGAAACCTTAC+CGG | - | chr1_2:27866963-27866982 | None:intergenic | 35.0% | |
| ! | CATGGAGTCCAAAAGATTTT+TGG | - | chr1_2:27867079-27867098 | None:intergenic | 35.0% |
| GTTACAACCTTCTTTACTCT+TGG | - | chr1_2:27867148-27867167 | None:intergenic | 35.0% | |
| GTAAAGAAGGTTGTAACACA+AGG | + | chr1_2:27867151-27867170 | Msa0065500:CDS | 35.0% | |
| !! | ACACAAGGAATTAGTCTTGT+CGG | + | chr1_2:27867166-27867185 | Msa0065500:CDS | 35.0% |
| !! | TTTGAATTTGTTGAGGGAGA+AGG | + | chr1_2:27867213-27867232 | Msa0065500:CDS | 35.0% |
| ! | GAAATGGAGTTGATTAGACA+TGG | + | chr1_2:27867238-27867257 | Msa0065500:CDS | 35.0% |
| ! | TTGTTCTTCAAGTCGCATTT+TGG | + | chr1_2:27867401-27867420 | Msa0065500:CDS | 35.0% |
| ! | TGTTCTTCAAGTCGCATTTT+GGG | + | chr1_2:27867402-27867421 | Msa0065500:CDS | 35.0% |
| AGCCTAAGTACTCTTATAAG+AGG | - | chr1_2:27867460-27867479 | None:intergenic | 35.0% | |
| !! | TCTTATAAGAGTACTTAGGC+TGG | + | chr1_2:27867459-27867478 | Msa0065500:CDS | 35.0% |
| ! | AATCTGTTGCTTCCTCTATT+GGG | + | chr1_2:27866033-27866052 | Msa0065500:CDS | 35.0% |
| TTATACTTCCATCCTATGTC+AGG | - | chr1_2:27866077-27866096 | None:intergenic | 35.0% | |
| ! | GATGGAAGTATAACAGTGTA+AGG | + | chr1_2:27866084-27866103 | Msa0065500:CDS | 35.0% |
| CACGTGTGATTATTGTTTGT+TGG | + | chr1_2:27866130-27866149 | Msa0065500:CDS | 35.0% | |
| ! | TATTGTTTGTTGGAGTCTAC+GGG | + | chr1_2:27866140-27866159 | Msa0065500:CDS | 35.0% |
| AGGGCCAAACAAAATCAAAT+GGG | + | chr1_2:27866173-27866192 | Msa0065500:CDS | 35.0% | |
| !! | CACTCCCATTTGATTTTGTT+TGG | - | chr1_2:27866180-27866199 | None:intergenic | 35.0% |
| ATCTTGAGCCTCATTTGAAA+CGG | - | chr1_2:27866294-27866313 | None:intergenic | 35.0% | |
| TTTCTCAACTCATGATAGGA+AGG | - | chr1_2:27866641-27866660 | None:intergenic | 35.0% | |
| CCAACTCTTTGTTAAGACAT+GGG | - | chr1_2:27866664-27866683 | None:intergenic | 35.0% | |
| TCCAACTCTTTGTTAAGACA+TGG | - | chr1_2:27866665-27866684 | None:intergenic | 35.0% | |
| TCAAATGTTGGAGACTAACA+AGG | + | chr1_2:27866694-27866713 | Msa0065500:intron | 35.0% | |
| CAATGTTCTTCCCTTTGTAT+CGG | - | chr1_2:27866765-27866784 | None:intergenic | 35.0% | |
| TTAATAAACATAGTGCCTGG+CGG | - | chr1_2:27866809-27866828 | None:intergenic | 35.0% | |
| CTCTTAATAAACATAGTGCC+TGG | - | chr1_2:27866812-27866831 | None:intergenic | 35.0% | |
| GAAGAAAGTAGAAACCTTAC+CGG | - | chr1_2:27866963-27866982 | None:intergenic | 35.0% | |
| ! | CATGGAGTCCAAAAGATTTT+TGG | - | chr1_2:27867079-27867098 | None:intergenic | 35.0% |
| GTTACAACCTTCTTTACTCT+TGG | - | chr1_2:27867148-27867167 | None:intergenic | 35.0% | |
| GTAAAGAAGGTTGTAACACA+AGG | + | chr1_2:27867151-27867170 | Msa0065500:CDS | 35.0% | |
| !! | ACACAAGGAATTAGTCTTGT+CGG | + | chr1_2:27867166-27867185 | Msa0065500:CDS | 35.0% |
| !! | TTTGAATTTGTTGAGGGAGA+AGG | + | chr1_2:27867213-27867232 | Msa0065500:CDS | 35.0% |
| ! | GAAATGGAGTTGATTAGACA+TGG | + | chr1_2:27867238-27867257 | Msa0065500:CDS | 35.0% |
| ! | TTGTTCTTCAAGTCGCATTT+TGG | + | chr1_2:27867401-27867420 | Msa0065500:CDS | 35.0% |
| ! | TGTTCTTCAAGTCGCATTTT+GGG | + | chr1_2:27867402-27867421 | Msa0065500:CDS | 35.0% |
| AGCCTAAGTACTCTTATAAG+AGG | - | chr1_2:27867460-27867479 | None:intergenic | 35.0% | |
| !! | TCTTATAAGAGTACTTAGGC+TGG | + | chr1_2:27867459-27867478 | Msa0065500:CDS | 35.0% |
| GCACCATTATCTTCTAATGC+CGG | + | chr1_2:27865993-27866012 | Msa0065500:CDS | 40.0% | |
| TCACCGGCATTAGAAGATAA+TGG | - | chr1_2:27865999-27866018 | None:intergenic | 40.0% | |
| ! | CAATCTGTTGCTTCCTCTAT+TGG | + | chr1_2:27866032-27866051 | Msa0065500:CDS | 40.0% |
| !! | CATTTGATTTTGTTTGGCCC+TGG | - | chr1_2:27866174-27866193 | None:intergenic | 40.0% |
| CAGGGCCAAACAAAATCAAA+TGG | + | chr1_2:27866172-27866191 | Msa0065500:CDS | 40.0% | |
| CAAAATCAAATGGGAGTGAC+AGG | + | chr1_2:27866182-27866201 | Msa0065500:CDS | 40.0% | |
| ! | TAAAGCTTGCTTAACGACAC+TGG | + | chr1_2:27866211-27866230 | Msa0065500:CDS | 40.0% |
| GGTGAAATCCGTTTCAAATG+AGG | + | chr1_2:27866283-27866302 | Msa0065500:CDS | 40.0% | |
| ACTTCAAGAGATTGGAAGGT+TGG | + | chr1_2:27866331-27866350 | Msa0065500:CDS | 40.0% | |
| !! | AGATTGGAAGGTTGGTAAGT+GGG | + | chr1_2:27866339-27866358 | Msa0065500:CDS | 40.0% |
| !! | AAGGTTGGTAAGTGGGAAAA+GGG | + | chr1_2:27866346-27866365 | Msa0065500:CDS | 40.0% |
| GGGTAATACAAAAGGTCCAT+TGG | + | chr1_2:27866406-27866425 | Msa0065500:intron | 40.0% | |
| TTAAACACCTGAGGCAACAT+TGG | + | chr1_2:27866442-27866461 | Msa0065500:intron | 40.0% | |
| TAAACACCTGAGGCAACATT+GGG | + | chr1_2:27866443-27866462 | Msa0065500:intron | 40.0% | |
| TGGGTTTCTCAACTCATGAT+AGG | - | chr1_2:27866645-27866664 | None:intergenic | 40.0% | |
| CCCATGTCTTAACAAAGAGT+TGG | + | chr1_2:27866661-27866680 | Msa0065500:intron | 40.0% | |
| AATGTTGGAGACTAACAAGG+CGG | + | chr1_2:27866697-27866716 | Msa0065500:intron | 40.0% | |
| GGTTGTTCAATAATGTCCGA+TGG | + | chr1_2:27866734-27866753 | Msa0065500:intron | 40.0% | |
| GTTCAATAATGTCCGATGGT+TGG | + | chr1_2:27866738-27866757 | Msa0065500:intron | 40.0% | |
| ! | TTTTTAATCAACTCTCCGCC+AGG | + | chr1_2:27866791-27866810 | Msa0065500:intron | 40.0% |
| ! | TTTTCCGGTTTTCACTTCTG+AGG | - | chr1_2:27866846-27866865 | None:intergenic | 40.0% |
| !! | GATGAATTTGTTGGGGAGAT+TGG | + | chr1_2:27866884-27866903 | Msa0065500:intron | 40.0% |
| CTTACCGGCCAAAACATAAT+TGG | - | chr1_2:27866948-27866967 | None:intergenic | 40.0% | |
| !!! | CAATTATGTTTTGGCCGGTA+AGG | + | chr1_2:27866946-27866965 | Msa0065500:intron | 40.0% |
| ! | CAGCGAGACCAAAAATCTTT+TGG | + | chr1_2:27867068-27867087 | Msa0065500:CDS | 40.0% |
| TCTATACAATGTGCTGCACA+TGG | - | chr1_2:27867097-27867116 | None:intergenic | 40.0% | |
| TGATTAGACATGGAGTCACA+AGG | + | chr1_2:27867248-27867267 | Msa0065500:CDS | 40.0% | |
| TCAAGAGTGGTCAGACTTAA+AGG | + | chr1_2:27867342-27867361 | Msa0065500:CDS | 40.0% | |
| !! | GGCCTCTTATAAGAGTACTT+AGG | + | chr1_2:27867455-27867474 | Msa0065500:CDS | 40.0% |
| CTGTCAACAATCTCAAGGAT+TGG | - | chr1_2:27867589-27867608 | None:intergenic | 40.0% | |
| CAATCCTTGAGATTGTTGAC+AGG | + | chr1_2:27867587-27867606 | Msa0065500:CDS | 40.0% | |
| TGATGACATCCATGCAGATT+TGG | + | chr1_2:27867765-27867784 | Msa0065500:CDS | 40.0% | |
| !! | GGATAAGTATAGGGCTAGTT+CGG | + | chr1_2:27867786-27867805 | Msa0065500:CDS | 40.0% |
| !! | GATAAGTATAGGGCTAGTTC+GGG | + | chr1_2:27867787-27867806 | Msa0065500:CDS | 40.0% |
| GCACCATTATCTTCTAATGC+CGG | + | chr1_2:27865993-27866012 | Msa0065500:CDS | 40.0% | |
| TCACCGGCATTAGAAGATAA+TGG | - | chr1_2:27865999-27866018 | None:intergenic | 40.0% | |
| ! | CAATCTGTTGCTTCCTCTAT+TGG | + | chr1_2:27866032-27866051 | Msa0065500:CDS | 40.0% |
| !! | CATTTGATTTTGTTTGGCCC+TGG | - | chr1_2:27866174-27866193 | None:intergenic | 40.0% |
| CAGGGCCAAACAAAATCAAA+TGG | + | chr1_2:27866172-27866191 | Msa0065500:CDS | 40.0% | |
| CAAAATCAAATGGGAGTGAC+AGG | + | chr1_2:27866182-27866201 | Msa0065500:CDS | 40.0% | |
| ! | TAAAGCTTGCTTAACGACAC+TGG | + | chr1_2:27866211-27866230 | Msa0065500:CDS | 40.0% |
| GGTGAAATCCGTTTCAAATG+AGG | + | chr1_2:27866283-27866302 | Msa0065500:CDS | 40.0% | |
| ACTTCAAGAGATTGGAAGGT+TGG | + | chr1_2:27866331-27866350 | Msa0065500:CDS | 40.0% | |
| !! | AGATTGGAAGGTTGGTAAGT+GGG | + | chr1_2:27866339-27866358 | Msa0065500:CDS | 40.0% |
| !! | AAGGTTGGTAAGTGGGAAAA+GGG | + | chr1_2:27866346-27866365 | Msa0065500:CDS | 40.0% |
| GGGTAATACAAAAGGTCCAT+TGG | + | chr1_2:27866406-27866425 | Msa0065500:intron | 40.0% | |
| TTAAACACCTGAGGCAACAT+TGG | + | chr1_2:27866442-27866461 | Msa0065500:intron | 40.0% | |
| TAAACACCTGAGGCAACATT+GGG | + | chr1_2:27866443-27866462 | Msa0065500:intron | 40.0% | |
| TGGGTTTCTCAACTCATGAT+AGG | - | chr1_2:27866645-27866664 | None:intergenic | 40.0% | |
| CCCATGTCTTAACAAAGAGT+TGG | + | chr1_2:27866661-27866680 | Msa0065500:intron | 40.0% | |
| AATGTTGGAGACTAACAAGG+CGG | + | chr1_2:27866697-27866716 | Msa0065500:intron | 40.0% | |
| GGTTGTTCAATAATGTCCGA+TGG | + | chr1_2:27866734-27866753 | Msa0065500:intron | 40.0% | |
| GTTCAATAATGTCCGATGGT+TGG | + | chr1_2:27866738-27866757 | Msa0065500:intron | 40.0% | |
| ! | TTTTTAATCAACTCTCCGCC+AGG | + | chr1_2:27866791-27866810 | Msa0065500:intron | 40.0% |
| ! | TTTTCCGGTTTTCACTTCTG+AGG | - | chr1_2:27866846-27866865 | None:intergenic | 40.0% |
| !! | GATGAATTTGTTGGGGAGAT+TGG | + | chr1_2:27866884-27866903 | Msa0065500:intron | 40.0% |
| CTTACCGGCCAAAACATAAT+TGG | - | chr1_2:27866948-27866967 | None:intergenic | 40.0% | |
| !!! | CAATTATGTTTTGGCCGGTA+AGG | + | chr1_2:27866946-27866965 | Msa0065500:intron | 40.0% |
| ! | CAGCGAGACCAAAAATCTTT+TGG | + | chr1_2:27867068-27867087 | Msa0065500:CDS | 40.0% |
| TCTATACAATGTGCTGCACA+TGG | - | chr1_2:27867097-27867116 | None:intergenic | 40.0% | |
| TGATTAGACATGGAGTCACA+AGG | + | chr1_2:27867248-27867267 | Msa0065500:CDS | 40.0% | |
| TCAAGAGTGGTCAGACTTAA+AGG | + | chr1_2:27867342-27867361 | Msa0065500:CDS | 40.0% | |
| !! | GGCCTCTTATAAGAGTACTT+AGG | + | chr1_2:27867455-27867474 | Msa0065500:CDS | 40.0% |
| CTGTCAACAATCTCAAGGAT+TGG | - | chr1_2:27867589-27867608 | None:intergenic | 40.0% | |
| CAATCCTTGAGATTGTTGAC+AGG | + | chr1_2:27867587-27867606 | Msa0065500:CDS | 40.0% | |
| TGATGACATCCATGCAGATT+TGG | + | chr1_2:27867765-27867784 | Msa0065500:CDS | 40.0% | |
| !! | GGATAAGTATAGGGCTAGTT+CGG | + | chr1_2:27867786-27867805 | Msa0065500:CDS | 40.0% |
| !! | GATAAGTATAGGGCTAGTTC+GGG | + | chr1_2:27867787-27867806 | Msa0065500:CDS | 40.0% |
| TTGTGCAGCAGAAGAATCAC+CGG | - | chr1_2:27866015-27866034 | None:intergenic | 45.0% | |
| AAACCAACCCTTCCTGACAT+AGG | + | chr1_2:27866062-27866081 | Msa0065500:CDS | 45.0% | |
| CTTCCATCCTATGTCAGGAA+GGG | - | chr1_2:27866072-27866091 | None:intergenic | 45.0% | |
| ACTTCCATCCTATGTCAGGA+AGG | - | chr1_2:27866073-27866092 | None:intergenic | 45.0% | |
| AGCTAATGAGGAAGCTAGAG+TGG | + | chr1_2:27866256-27866275 | Msa0065500:CDS | 45.0% | |
| TGAGGCTCAAGATGATGAAG+AGG | + | chr1_2:27866301-27866320 | Msa0065500:CDS | 45.0% | |
| CACGACTTCAAGAGATTGGA+AGG | + | chr1_2:27866327-27866346 | Msa0065500:CDS | 45.0% | |
| !! | GAGATTGGAAGGTTGGTAAG+TGG | + | chr1_2:27866338-27866357 | Msa0065500:CDS | 45.0% |
| !! | GAAGGTTGGTAAGTGGGAAA+AGG | + | chr1_2:27866345-27866364 | Msa0065500:CDS | 45.0% |
| GAAAAGGGCAAGGACTGAAA+TGG | + | chr1_2:27866361-27866380 | Msa0065500:CDS | 45.0% | |
| GACTGAAATGGAGAGTCTTC+CGG | + | chr1_2:27866373-27866392 | Msa0065500:CDS | 45.0% | |
| GTATTACCCTTCTTAGTGGC+CGG | - | chr1_2:27866395-27866414 | None:intergenic | 45.0% | |
| ! | CATTTTCCCAATGTTGCCTC+AGG | - | chr1_2:27866452-27866471 | None:intergenic | 45.0% |
| CTCAACTCATGATAGGAAGG+AGG | - | chr1_2:27866638-27866657 | None:intergenic | 45.0% | |
| AAGGCGGAAGCAGACAAATA+TGG | + | chr1_2:27866713-27866732 | Msa0065500:intron | 45.0% | |
| ! | CTTTGTATCGGTCCAACCAT+CGG | - | chr1_2:27866753-27866772 | None:intergenic | 45.0% |
| GATGGTTGGACCGATACAAA+GGG | + | chr1_2:27866752-27866771 | Msa0065500:intron | 45.0% | |
| GCTTCCTCAGAAGTGAAAAC+CGG | + | chr1_2:27866839-27866858 | Msa0065500:intron | 45.0% | |
| AACATAATTGGCCCCGTTGT+CGG | - | chr1_2:27866936-27866955 | None:intergenic | 45.0% | |
| ! | CAACGGGGCCAATTATGTTT+TGG | + | chr1_2:27866937-27866956 | Msa0065500:intron | 45.0% |
| !!! | ATTTTTGGTCTCGCTGCTTG+AGG | - | chr1_2:27867064-27867083 | None:intergenic | 45.0% |
| CCACTCTTGAGAAGTGAACA+TGG | - | chr1_2:27867332-27867351 | None:intergenic | 45.0% | |
| CCATGTTCACTTCTCAAGAG+TGG | + | chr1_2:27867329-27867348 | Msa0065500:CDS | 45.0% | |
| AGAAGTTGCCTTCTTACCCT+TGG | - | chr1_2:27867380-27867399 | None:intergenic | 45.0% | |
| ! | ATCAAGCAATGGTGGGAGTA+AGG | + | chr1_2:27867518-27867537 | Msa0065500:CDS | 45.0% |
| TCCTTGAGATTGTTGACAGG+AGG | + | chr1_2:27867590-27867609 | Msa0065500:CDS | 45.0% | |
| ACCTCCTGTCAACAATCTCA+AGG | - | chr1_2:27867594-27867613 | None:intergenic | 45.0% | |
| TTGAGATTGTTGACAGGAGG+TGG | + | chr1_2:27867593-27867612 | Msa0065500:CDS | 45.0% | |
| TGAGATTGTTGACAGGAGGT+GGG | + | chr1_2:27867594-27867613 | Msa0065500:CDS | 45.0% | |
| AAATGTCCAGCTGCATGCAA+CGG | - | chr1_2:27867637-27867656 | None:intergenic | 45.0% | |
| AGAAGCAATAAGGCACAGAG+AGG | + | chr1_2:27867825-27867844 | Msa0065500:CDS | 45.0% | |
| TTGTGCAGCAGAAGAATCAC+CGG | - | chr1_2:27866015-27866034 | None:intergenic | 45.0% | |
| AAACCAACCCTTCCTGACAT+AGG | + | chr1_2:27866062-27866081 | Msa0065500:CDS | 45.0% | |
| CTTCCATCCTATGTCAGGAA+GGG | - | chr1_2:27866072-27866091 | None:intergenic | 45.0% | |
| ACTTCCATCCTATGTCAGGA+AGG | - | chr1_2:27866073-27866092 | None:intergenic | 45.0% | |
| AGCTAATGAGGAAGCTAGAG+TGG | + | chr1_2:27866256-27866275 | Msa0065500:CDS | 45.0% | |
| TGAGGCTCAAGATGATGAAG+AGG | + | chr1_2:27866301-27866320 | Msa0065500:CDS | 45.0% | |
| CACGACTTCAAGAGATTGGA+AGG | + | chr1_2:27866327-27866346 | Msa0065500:CDS | 45.0% | |
| !! | GAGATTGGAAGGTTGGTAAG+TGG | + | chr1_2:27866338-27866357 | Msa0065500:CDS | 45.0% |
| !! | GAAGGTTGGTAAGTGGGAAA+AGG | + | chr1_2:27866345-27866364 | Msa0065500:CDS | 45.0% |
| GAAAAGGGCAAGGACTGAAA+TGG | + | chr1_2:27866361-27866380 | Msa0065500:CDS | 45.0% | |
| GACTGAAATGGAGAGTCTTC+CGG | + | chr1_2:27866373-27866392 | Msa0065500:CDS | 45.0% | |
| GTATTACCCTTCTTAGTGGC+CGG | - | chr1_2:27866395-27866414 | None:intergenic | 45.0% | |
| ! | CATTTTCCCAATGTTGCCTC+AGG | - | chr1_2:27866452-27866471 | None:intergenic | 45.0% |
| CTCAACTCATGATAGGAAGG+AGG | - | chr1_2:27866638-27866657 | None:intergenic | 45.0% | |
| AAGGCGGAAGCAGACAAATA+TGG | + | chr1_2:27866713-27866732 | Msa0065500:intron | 45.0% | |
| ! | CTTTGTATCGGTCCAACCAT+CGG | - | chr1_2:27866753-27866772 | None:intergenic | 45.0% |
| GATGGTTGGACCGATACAAA+GGG | + | chr1_2:27866752-27866771 | Msa0065500:intron | 45.0% | |
| GCTTCCTCAGAAGTGAAAAC+CGG | + | chr1_2:27866839-27866858 | Msa0065500:intron | 45.0% | |
| AACATAATTGGCCCCGTTGT+CGG | - | chr1_2:27866936-27866955 | None:intergenic | 45.0% | |
| ! | CAACGGGGCCAATTATGTTT+TGG | + | chr1_2:27866937-27866956 | Msa0065500:intron | 45.0% |
| !!! | ATTTTTGGTCTCGCTGCTTG+AGG | - | chr1_2:27867064-27867083 | None:intergenic | 45.0% |
| CCACTCTTGAGAAGTGAACA+TGG | - | chr1_2:27867332-27867351 | None:intergenic | 45.0% | |
| CCATGTTCACTTCTCAAGAG+TGG | + | chr1_2:27867329-27867348 | Msa0065500:CDS | 45.0% | |
| AGAAGTTGCCTTCTTACCCT+TGG | - | chr1_2:27867380-27867399 | None:intergenic | 45.0% | |
| ! | ATCAAGCAATGGTGGGAGTA+AGG | + | chr1_2:27867518-27867537 | Msa0065500:CDS | 45.0% |
| TCCTTGAGATTGTTGACAGG+AGG | + | chr1_2:27867590-27867609 | Msa0065500:CDS | 45.0% | |
| ACCTCCTGTCAACAATCTCA+AGG | - | chr1_2:27867594-27867613 | None:intergenic | 45.0% | |
| TTGAGATTGTTGACAGGAGG+TGG | + | chr1_2:27867593-27867612 | Msa0065500:CDS | 45.0% | |
| TGAGATTGTTGACAGGAGGT+GGG | + | chr1_2:27867594-27867613 | Msa0065500:CDS | 45.0% | |
| AAATGTCCAGCTGCATGCAA+CGG | - | chr1_2:27867637-27867656 | None:intergenic | 45.0% | |
| AGAAGCAATAAGGCACAGAG+AGG | + | chr1_2:27867825-27867844 | Msa0065500:CDS | 45.0% | |
| ! | TGTTGCTTCCTCTATTGGGC+TGG | + | chr1_2:27866037-27866056 | Msa0065500:CDS | 50.0% |
| TGGTTTGACCAGCCCAATAG+AGG | - | chr1_2:27866048-27866067 | None:intergenic | 50.0% | |
| CATCCTATGTCAGGAAGGGT+TGG | - | chr1_2:27866068-27866087 | None:intergenic | 50.0% | |
| CAACCCTTCCTGACATAGGA+TGG | + | chr1_2:27866066-27866085 | Msa0065500:CDS | 50.0% | |
| ! | TGTTTGTTGGAGTCTACGGG+AGG | + | chr1_2:27866143-27866162 | Msa0065500:CDS | 50.0% |
| AGTCTACGGGAGGAATTTCC+AGG | + | chr1_2:27866153-27866172 | Msa0065500:CDS | 50.0% | |
| GTCTACGGGAGGAATTTCCA+GGG | + | chr1_2:27866154-27866173 | Msa0065500:CDS | 50.0% | |
| ! | AGCTTGCTTAACGACACTGG+AGG | + | chr1_2:27866214-27866233 | Msa0065500:CDS | 50.0% |
| TTGCTTAACGACACTGGAGG+AGG | + | chr1_2:27866217-27866236 | Msa0065500:CDS | 50.0% | |
| TGAGGAAGCTAGAGTGGCAA+AGG | + | chr1_2:27866262-27866281 | Msa0065500:CDS | 50.0% | |
| GCAGCACGACTTCAAGAGAT+TGG | + | chr1_2:27866323-27866342 | Msa0065500:CDS | 50.0% | |
| TGGTAAGTGGGAAAAGGGCA+AGG | + | chr1_2:27866351-27866370 | Msa0065500:CDS | 50.0% | |
| AGTCTTCCGGCCACTAAGAA+GGG | + | chr1_2:27866386-27866405 | Msa0065500:CDS | 50.0% | |
| TAGGAAGGAGGCTTCAAGTG+AGG | - | chr1_2:27866626-27866645 | None:intergenic | 50.0% | |
| CGATGGTTGGACCGATACAA+AGG | + | chr1_2:27866751-27866770 | Msa0065500:intron | 50.0% | |
| !!! | GGGGCCAATTATGTTTTGGC+CGG | + | chr1_2:27866941-27866960 | Msa0065500:intron | 50.0% |
| GTTGAGGGAGAAGGCTGAAA+TGG | + | chr1_2:27867222-27867241 | Msa0065500:CDS | 50.0% | |
| AAAGGTGAGTGACGAAGCCA+AGG | + | chr1_2:27867360-27867379 | Msa0065500:CDS | 50.0% | |
| AAGGTGAGTGACGAAGCCAA+GGG | + | chr1_2:27867361-27867380 | Msa0065500:CDS | 50.0% | |
| TGACGAAGCCAAGGGTAAGA+AGG | + | chr1_2:27867369-27867388 | Msa0065500:CDS | 50.0% | |
| GAGATTGTTGACAGGAGGTG+GGG | + | chr1_2:27867595-27867614 | Msa0065500:CDS | 50.0% | |
| ! | TGTTGCTTCCTCTATTGGGC+TGG | + | chr1_2:27866037-27866056 | Msa0065500:CDS | 50.0% |
| TGGTTTGACCAGCCCAATAG+AGG | - | chr1_2:27866048-27866067 | None:intergenic | 50.0% | |
| CATCCTATGTCAGGAAGGGT+TGG | - | chr1_2:27866068-27866087 | None:intergenic | 50.0% | |
| CAACCCTTCCTGACATAGGA+TGG | + | chr1_2:27866066-27866085 | Msa0065500:CDS | 50.0% | |
| ! | TGTTTGTTGGAGTCTACGGG+AGG | + | chr1_2:27866143-27866162 | Msa0065500:CDS | 50.0% |
| AGTCTACGGGAGGAATTTCC+AGG | + | chr1_2:27866153-27866172 | Msa0065500:CDS | 50.0% | |
| GTCTACGGGAGGAATTTCCA+GGG | + | chr1_2:27866154-27866173 | Msa0065500:CDS | 50.0% | |
| ! | AGCTTGCTTAACGACACTGG+AGG | + | chr1_2:27866214-27866233 | Msa0065500:CDS | 50.0% |
| TTGCTTAACGACACTGGAGG+AGG | + | chr1_2:27866217-27866236 | Msa0065500:CDS | 50.0% | |
| TGAGGAAGCTAGAGTGGCAA+AGG | + | chr1_2:27866262-27866281 | Msa0065500:CDS | 50.0% | |
| GCAGCACGACTTCAAGAGAT+TGG | + | chr1_2:27866323-27866342 | Msa0065500:CDS | 50.0% | |
| TGGTAAGTGGGAAAAGGGCA+AGG | + | chr1_2:27866351-27866370 | Msa0065500:CDS | 50.0% | |
| AGTCTTCCGGCCACTAAGAA+GGG | + | chr1_2:27866386-27866405 | Msa0065500:CDS | 50.0% | |
| TAGGAAGGAGGCTTCAAGTG+AGG | - | chr1_2:27866626-27866645 | None:intergenic | 50.0% | |
| CGATGGTTGGACCGATACAA+AGG | + | chr1_2:27866751-27866770 | Msa0065500:intron | 50.0% | |
| !!! | GGGGCCAATTATGTTTTGGC+CGG | + | chr1_2:27866941-27866960 | Msa0065500:intron | 50.0% |
| GTTGAGGGAGAAGGCTGAAA+TGG | + | chr1_2:27867222-27867241 | Msa0065500:CDS | 50.0% | |
| AAAGGTGAGTGACGAAGCCA+AGG | + | chr1_2:27867360-27867379 | Msa0065500:CDS | 50.0% | |
| AAGGTGAGTGACGAAGCCAA+GGG | + | chr1_2:27867361-27867380 | Msa0065500:CDS | 50.0% | |
| TGACGAAGCCAAGGGTAAGA+AGG | + | chr1_2:27867369-27867388 | Msa0065500:CDS | 50.0% | |
| GAGATTGTTGACAGGAGGTG+GGG | + | chr1_2:27867595-27867614 | Msa0065500:CDS | 50.0% | |
| GAGTCTTCCGGCCACTAAGA+AGG | + | chr1_2:27866385-27866404 | Msa0065500:CDS | 55.0% | |
| CGAAAGCTGTGTTGTGCAGC+TGG | + | chr1_2:27866907-27866926 | Msa0065500:intron | 55.0% | |
| GTGCAGCTGGTTACCGACAA+CGG | + | chr1_2:27866920-27866939 | Msa0065500:intron | 55.0% | |
| TGCAGCTGGTTACCGACAAC+GGG | + | chr1_2:27866921-27866940 | Msa0065500:intron | 55.0% | |
| CATCATCCGTTGCATGCAGC+TGG | + | chr1_2:27867628-27867647 | Msa0065500:CDS | 55.0% | |
| GAGGATACGCGTACATCTCC+TGG | + | chr1_2:27867844-27867863 | Msa0065500:CDS | 55.0% | |
| GAGTCTTCCGGCCACTAAGA+AGG | + | chr1_2:27866385-27866404 | Msa0065500:CDS | 55.0% | |
| CGAAAGCTGTGTTGTGCAGC+TGG | + | chr1_2:27866907-27866926 | Msa0065500:intron | 55.0% | |
| GTGCAGCTGGTTACCGACAA+CGG | + | chr1_2:27866920-27866939 | Msa0065500:intron | 55.0% | |
| TGCAGCTGGTTACCGACAAC+GGG | + | chr1_2:27866921-27866940 | Msa0065500:intron | 55.0% | |
| CATCATCCGTTGCATGCAGC+TGG | + | chr1_2:27867628-27867647 | Msa0065500:CDS | 55.0% | |
| GAGGATACGCGTACATCTCC+TGG | + | chr1_2:27867844-27867863 | Msa0065500:CDS | 55.0% | |
| GCAGCTGGTTACCGACAACG+GGG | + | chr1_2:27866922-27866941 | Msa0065500:intron | 60.0% | |
| GCAGCTGGTTACCGACAACG+GGG | + | chr1_2:27866922-27866941 | Msa0065500:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 27865972 | 27867873 | 27865972 | ID=Msa0065500;Name=Msa0065500 |
| chr1_2 | mRNA | 27865972 | 27867873 | 27865972 | ID=Msa0065500-mRNA-1;Parent=Msa0065500;Name=Msa0065500-mRNA-1;_AED=0.51;_eAED=0.53;_QI=0|0|0|1|1|1|2|0|422 |
| chr1_2 | exon | 27865972 | 27866419 | 27865972 | ID=Msa0065500-mRNA-1:exon:9624;Parent=Msa0065500-mRNA-1 |
| chr1_2 | exon | 27867053 | 27867873 | 27867053 | ID=Msa0065500-mRNA-1:exon:9625;Parent=Msa0065500-mRNA-1 |
| chr1_2 | CDS | 27865972 | 27866419 | 27865972 | ID=Msa0065500-mRNA-1:cds;Parent=Msa0065500-mRNA-1 |
| chr1_2 | CDS | 27867053 | 27867873 | 27867053 | ID=Msa0065500-mRNA-1:cds;Parent=Msa0065500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
