Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157210 | XP_024632201.1 | 71.361 | 632 | 130 | 3 | 138 | 751 | 68 | 666 | 0.0 | 841 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157210 | A0A2K3PFL3 | 56.418 | 631 | 236 | 8 | 99 | 707 | 95 | 708 | 0.0 | 693 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa0157210 | 0.853710 | 1.995503e-61 | -8.615850e-47 |
| Msa0017290 | Msa0157210 | 0.879127 | 1.605198e-69 | -8.615850e-47 |
| Msa0065500 | Msa0157210 | 0.888687 | 4.733917e-73 | -8.615850e-47 |
| Msa0087010 | Msa0157210 | 0.854248 | 1.396396e-61 | -8.615850e-47 |
| Msa0087020 | Msa0157210 | 0.877267 | 7.208894e-69 | -8.615850e-47 |
| Msa0157210 | Msa0520410 | 0.800186 | 1.622090e-48 | -8.615850e-47 |
| Msa0157210 | Msa0542240 | 0.815465 | 9.119586e-52 | -8.615850e-47 |
| Msa0157210 | Msa0606960 | 0.870613 | 1.277961e-66 | -8.615850e-47 |
| Msa0157210 | Msa1003060 | 0.800624 | 1.320936e-48 | -8.615850e-47 |
| Msa0157210 | Msa1009560 | 0.804731 | 1.876462e-49 | -8.615850e-47 |
| Msa0157210 | Msa1306260 | 0.805362 | 1.384867e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157210 | MtrunA17_Chr3g0112101 | 33.884 | 484 | 294 | 8 | 124 | 586 | 204 | 682 | 5.02e-75 | 258 |
| Msa0157210 | MtrunA17_Chr2g0302451 | 32.826 | 460 | 283 | 6 | 148 | 586 | 337 | 791 | 2.42e-74 | 259 |
| Msa0157210 | MtrunA17_Chr3g0126261 | 30.658 | 486 | 311 | 8 | 146 | 611 | 48 | 527 | 3.36e-72 | 246 |
| Msa0157210 | MtrunA17_Chr6g0454051 | 29.131 | 587 | 355 | 14 | 53 | 586 | 39 | 617 | 1.09e-66 | 233 |
| Msa0157210 | MtrunA17_Chr6g0455641 | 31.224 | 490 | 307 | 9 | 147 | 612 | 104 | 587 | 2.30e-64 | 226 |
| Msa0157210 | MtrunA17_Chr6g0454041 | 28.571 | 588 | 358 | 10 | 53 | 586 | 85 | 664 | 1.97e-60 | 217 |
| Msa0157210 | MtrunA17_Chr6g0454061 | 29.455 | 550 | 342 | 14 | 95 | 609 | 55 | 593 | 7.75e-58 | 207 |
| Msa0157210 | MtrunA17_Chr6g0476101 | 38.628 | 277 | 148 | 4 | 234 | 492 | 17 | 289 | 3.24e-57 | 197 |
| Msa0157210 | MtrunA17_Chr2g0323591 | 37.624 | 101 | 58 | 3 | 17 | 114 | 23 | 121 | 4.51e-14 | 70.9 |
| Msa0157210 | MtrunA17_Chr4g0010371 | 37.255 | 102 | 55 | 3 | 463 | 560 | 4 | 100 | 1.14e-13 | 67.4 |
| Msa0157210 | MtrunA17_Chr6g0476241 | 44.304 | 79 | 42 | 2 | 36 | 113 | 24 | 101 | 5.36e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157210 | AT5G33406.1 | 42.241 | 348 | 189 | 4 | 313 | 655 | 11 | 351 | 7.99e-89 | 288 |
| Msa0157210 | AT4G15020.2 | 32.544 | 507 | 314 | 9 | 102 | 586 | 176 | 676 | 9.85e-76 | 260 |
| Msa0157210 | AT4G15020.1 | 32.544 | 507 | 314 | 9 | 102 | 586 | 176 | 676 | 9.85e-76 | 260 |
| Msa0157210 | AT1G79740.1 | 28.476 | 597 | 361 | 12 | 36 | 585 | 6 | 583 | 4.40e-73 | 251 |
| Msa0157210 | AT1G79740.4 | 28.476 | 597 | 361 | 12 | 36 | 585 | 6 | 583 | 4.40e-73 | 251 |
| Msa0157210 | AT3G22220.3 | 31.693 | 508 | 313 | 11 | 102 | 585 | 172 | 669 | 1.00e-71 | 249 |
| Msa0157210 | AT3G22220.4 | 31.693 | 508 | 313 | 11 | 102 | 585 | 172 | 669 | 1.00e-71 | 249 |
| Msa0157210 | AT3G22220.2 | 31.693 | 508 | 313 | 11 | 102 | 585 | 172 | 669 | 1.00e-71 | 249 |
| Msa0157210 | AT3G22220.1 | 31.693 | 508 | 313 | 11 | 102 | 585 | 172 | 669 | 1.00e-71 | 249 |
| Msa0157210 | AT1G79740.3 | 31.659 | 458 | 284 | 8 | 146 | 585 | 4 | 450 | 5.95e-71 | 241 |
| Msa0157210 | AT1G79740.2 | 31.659 | 458 | 284 | 8 | 146 | 585 | 4 | 450 | 5.95e-71 | 241 |
| Msa0157210 | AT3G17450.2 | 30.454 | 463 | 294 | 8 | 147 | 586 | 332 | 789 | 1.86e-67 | 239 |
| Msa0157210 | AT3G17450.1 | 30.454 | 463 | 294 | 8 | 147 | 586 | 332 | 789 | 1.86e-67 | 239 |
| Msa0157210 | AT3G13030.3 | 27.181 | 493 | 308 | 10 | 126 | 585 | 55 | 529 | 1.33e-49 | 183 |
| Msa0157210 | AT3G13030.4 | 27.181 | 493 | 308 | 10 | 126 | 585 | 55 | 529 | 1.33e-49 | 183 |
| Msa0157210 | AT3G13030.1 | 27.181 | 493 | 308 | 10 | 126 | 585 | 55 | 529 | 1.33e-49 | 183 |
| Msa0157210 | AT3G13030.2 | 27.181 | 493 | 308 | 10 | 126 | 585 | 55 | 529 | 1.33e-49 | 183 |
| Msa0157210 | AT3G13020.1 | 25.833 | 600 | 369 | 15 | 52 | 590 | 21 | 605 | 1.01e-46 | 176 |
| Msa0157210 | AT3G13030.5 | 25.703 | 498 | 276 | 11 | 126 | 585 | 55 | 496 | 1.47e-40 | 156 |
| Msa0157210 | AT5G31412.1 | 27.316 | 421 | 178 | 10 | 37 | 439 | 24 | 334 | 1.30e-33 | 134 |
| Msa0157210 | AT3G13010.1 | 23.693 | 574 | 382 | 20 | 52 | 590 | 20 | 572 | 3.17e-32 | 132 |
| Msa0157210 | AT1G43260.1 | 31.527 | 203 | 120 | 3 | 148 | 331 | 66 | 268 | 1.13e-27 | 114 |
| Msa0157210 | AT1G36095.1 | 34.731 | 167 | 91 | 2 | 223 | 371 | 131 | 297 | 3.07e-23 | 101 |
Find 189 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAATGTTGGTAGTTTA+TGG | 0.122307 | 1_4:-24149346 | Msa0157210:CDS |
| TGTTGGTAGTTTATGGTTAT+TGG | 0.144730 | 1_4:-24149339 | Msa0157210:CDS |
| CAATCTGTTGCTTCCTCTAT+TGG | 0.169469 | 1_4:-24151593 | Msa0157210:CDS |
| GGATAAGTATAGGGCTAGTT+TGG | 0.221929 | 1_4:-24149838 | Msa0157210:CDS |
| TCAAGAATGGTCGGACTTAA+AGG | 0.251149 | 1_4:-24150282 | Msa0157210:CDS |
| TTGTTCTTCAAGTCGCATTT+TGG | 0.258584 | 1_4:-24150223 | Msa0157210:CDS |
| TGCAGCTGGTTGCCGACAAC+GGG | 0.276809 | 1_4:-24150703 | Msa0157210:CDS |
| CTGCCTTCTGCAAAGCTGCT+TGG | 0.290111 | 1_4:+24149198 | None:intergenic |
| TTGGCTCCTATTGTTGAATA+AGG | 0.297747 | 1_4:+24149217 | None:intergenic |
| CACTCCCATTTGATGTTGTT+TGG | 0.299053 | 1_4:+24151448 | None:intergenic |
| CAACGGGGCCAATTATGTTT+TGG | 0.301560 | 1_4:-24150687 | Msa0157210:CDS |
| GTTGGTAGTTTATGGTTATT+GGG | 0.309245 | 1_4:-24149338 | Msa0157210:CDS |
| AATCTGTTGCTTCCTCTATT+GGG | 0.309777 | 1_4:-24151592 | Msa0157210:CDS |
| CTTACCGGCCAAAACATAAT+TGG | 0.316047 | 1_4:+24150679 | None:intergenic |
| GCATCATCTTTATCTATTGC+TGG | 0.323328 | 1_4:+24149939 | None:intergenic |
| TTAAATTGGCAGAAGCAATA+AGG | 0.345705 | 1_4:-24149809 | Msa0157210:CDS |
| TCCAAAGTTTATTACTGATT+GGG | 0.346270 | 1_4:-24149033 | Msa0157210:CDS |
| AAACTACCAACATTAATTTC+AGG | 0.348764 | 1_4:+24149350 | None:intergenic |
| ATCCAAAGTTTATTACTGAT+TGG | 0.349134 | 1_4:-24149034 | Msa0157210:CDS |
| TAGTTTGGGTAACTTTAAAT+TGG | 0.353261 | 1_4:-24149823 | Msa0157210:CDS |
| ATAGTACGTAACTTCAGATT+TGG | 0.354973 | 1_4:+24149646 | None:intergenic |
| AGTTTGACTGTTAGCTCATC+GGG | 0.359053 | 1_4:-24149613 | Msa0157210:CDS |
| CATCGGGGTGTGAGAGGAAT+TGG | 0.360941 | 1_4:-24149597 | Msa0157210:CDS |
| AGTCTACAGGAGGAATTTCC+AGG | 0.369704 | 1_4:-24151472 | Msa0157210:CDS |
| TGATGACATCCATGCAGATT+TGG | 0.370501 | 1_4:-24149859 | Msa0157210:CDS |
| GTTACAACCTTCTTTACTCT+TGG | 0.375352 | 1_4:+24150479 | None:intergenic |
| TTCACTCCAAGAAAAGAAAT+AGG | 0.380458 | 1_4:-24149478 | Msa0157210:CDS |
| TTTCAGCTGCTTGGTGGAAT+AGG | 0.383939 | 1_4:-24149684 | Msa0157210:intron |
| CTGAGCCCTTATTCAACAAT+AGG | 0.384137 | 1_4:-24149223 | Msa0157210:CDS |
| GTTTATGCTCTTAAAGCTAT+GGG | 0.386704 | 1_4:-24150191 | Msa0157210:CDS |
| GTTGAGGGAGAAGGCTGAAA+TGG | 0.395558 | 1_4:-24150402 | Msa0157210:CDS |
| GATGAATTTGTTGGAGAGAT+TGG | 0.395903 | 1_4:-24150740 | Msa0157210:CDS |
| TGGCTCCTATTGTTGAATAA+GGG | 0.399829 | 1_4:+24149218 | None:intergenic |
| GTTGAAGCAATTGGTCAATA+TGG | 0.400558 | 1_4:-24151025 | Msa0157210:intron |
| AAGGCAGAAGCAGACAAATA+TGG | 0.403408 | 1_4:-24150911 | Msa0157210:CDS |
| CACGTGTGATTATTGTTTGT+TGG | 0.404102 | 1_4:-24151495 | Msa0157210:CDS |
| CAGGGCCAAACAACATCAAA+TGG | 0.407934 | 1_4:-24151453 | Msa0157210:CDS |
| TGATATATGAAACTCATTGC+AGG | 0.408777 | 1_4:+24150125 | None:intergenic |
| TGTTTATGCTCTTAAAGCTA+TGG | 0.411079 | 1_4:-24150192 | Msa0157210:CDS |
| TGCAGATTTGGATAAGTATA+GGG | 0.412113 | 1_4:-24149847 | Msa0157210:CDS |
| ATGCAGATTTGGATAAGTAT+AGG | 0.415922 | 1_4:-24149848 | Msa0157210:CDS |
| AGCTGCTTGGTGGAATAGGT+GGG | 0.417032 | 1_4:-24149680 | Msa0157210:CDS |
| GATGGAAGTATAACAGTGTA+AGG | 0.417281 | 1_4:-24151541 | Msa0157210:CDS |
| GATTTAATGCTAGAAAAGAT+TGG | 0.417475 | 1_4:-24150509 | Msa0157210:CDS |
| TTGAGATTGTTGACAGGAGG+TGG | 0.418360 | 1_4:-24150031 | Msa0157210:CDS |
| GATAAGTATAGGGCTAGTTT+GGG | 0.420303 | 1_4:-24149837 | Msa0157210:CDS |
| GAAAGGGGCAAGGACTGAAT+TGG | 0.420745 | 1_4:-24151264 | Msa0157210:CDS |
| CAAGTATAACCAAACTTTGA+AGG | 0.420791 | 1_4:-24149420 | Msa0157210:CDS |
| GACTGAATTGGAGAGTCTTC+CGG | 0.425050 | 1_4:-24151252 | Msa0157210:CDS |
| AACATAATTGGCCCCGTTGT+CGG | 0.428718 | 1_4:+24150691 | None:intergenic |
| AAAATCAATTTCACCTCCTC+CGG | 0.429941 | 1_4:+24151395 | None:intergenic |
| CCCCAATCAGTAATAAACTT+TGG | 0.433326 | 1_4:+24149032 | None:intergenic |
| TATTGTTTGTTGGAGTCTAC+AGG | 0.433713 | 1_4:-24151485 | Msa0157210:CDS |
| GAAGGTTGGTAAGTGGGAAA+GGG | 0.439713 | 1_4:-24151280 | Msa0157210:CDS |
| CATTTGATGTTGTTTGGCCC+TGG | 0.446713 | 1_4:+24151454 | None:intergenic |
| GGAAGATAATAAAGAGGAAG+AGG | 0.447642 | 1_4:-24148985 | Msa0157210:CDS |
| TTAATTGCATTTCAGCTGCT+TGG | 0.448243 | 1_4:-24149693 | Msa0157210:intron |
| TGTTGCTTCCTCTATTGGGC+TGG | 0.453869 | 1_4:-24151588 | Msa0157210:CDS |
| GGAAGGTTGGTAAGTGGGAA+AGG | 0.455230 | 1_4:-24151281 | Msa0157210:CDS |
| CATCATCCGTTGCATGCAGC+TGG | 0.456532 | 1_4:-24149996 | Msa0157210:CDS |
| CGAAAGTCGTGTTGTGCAGC+TGG | 0.457201 | 1_4:-24150717 | Msa0157210:CDS |
| CCATCAAAATCTACTGGAAA+GGG | 0.459432 | 1_4:-24149149 | Msa0157210:CDS |
| AGATTGGCTAGATGTTGAAC+TGG | 0.460501 | 1_4:-24149258 | Msa0157210:CDS |
| ATCTTGAGCCTCATTTGAAA+CGG | 0.462692 | 1_4:+24151334 | None:intergenic |
| AGATAAAGATGATGCGTTGT+TGG | 0.462764 | 1_4:-24149931 | Msa0157210:CDS |
| GAGTTTGACTGTTAGCTCAT+CGG | 0.464921 | 1_4:-24149614 | Msa0157210:CDS |
| GTAGCACGACTTCAAGAGAT+TGG | 0.465321 | 1_4:-24151302 | Msa0157210:CDS |
| GCAGCTCCATCAAAATCTAC+TGG | 0.466548 | 1_4:-24149155 | Msa0157210:CDS |
| GAGTCTTCCGGCCACTAAGA+AGG | 0.470821 | 1_4:-24151240 | Msa0157210:CDS |
| ATGATGATGATGATTTAGAT+TGG | 0.471179 | 1_4:-24149274 | Msa0157210:CDS |
| CAGCTGCTTGGTGGAATAGG+TGG | 0.474504 | 1_4:-24149681 | Msa0157210:CDS |
| AGAAGTTGCCTTCTTACCCT+TGG | 0.474519 | 1_4:+24150247 | None:intergenic |
| GATATGTTGGATGAATTTGT+TGG | 0.475872 | 1_4:-24150749 | Msa0157210:CDS |
| TAATAAAGAGGAAGAGGATG+AGG | 0.476548 | 1_4:-24148979 | Msa0157210:CDS |
| CCAAAGTTTATTACTGATTG+GGG | 0.476942 | 1_4:-24149032 | Msa0157210:CDS |
| CAACATCAAATGGGAGTGAC+AGG | 0.477478 | 1_4:-24151443 | Msa0157210:CDS |
| AGCCTAAGTACTCTTATAAG+AGG | 0.478383 | 1_4:+24150167 | None:intergenic |
| TGGTTTGACCAGCCCAATAG+AGG | 0.478495 | 1_4:+24151580 | None:intergenic |
| GGATTGTTATAAAAGTGCTT+CGG | 0.481643 | 1_4:+24149960 | None:intergenic |
| GGAAAGGGAAAGGGAAATCA+AGG | 0.485934 | 1_4:-24149128 | Msa0157210:CDS |
| CAAACTTTCTTCAATTGCAA+AGG | 0.488401 | 1_4:-24150346 | Msa0157210:CDS |
| AAAGGGAAATCAAGGGGCAA+AGG | 0.488992 | 1_4:-24149120 | Msa0157210:CDS |
| AAGGGAAATCAAGGGGCAAA+GGG | 0.491418 | 1_4:-24149119 | Msa0157210:CDS |
| CATCCTATGTCAGGAAGGGT+TGG | 0.491956 | 1_4:+24151560 | None:intergenic |
| ACACAAGGAATTAGTCTTGT+CGG | 0.492872 | 1_4:-24150458 | Msa0157210:CDS |
| ATTGCATTTCAGCTGCTTGG+TGG | 0.497682 | 1_4:-24149690 | Msa0157210:intron |
| TAGAAAGCTTTCTTCTTCAG+TGG | 0.502457 | 1_4:-24149889 | Msa0157210:CDS |
| CAATGTTCTTCCCTTTGTAT+CGG | 0.502748 | 1_4:+24150862 | None:intergenic |
| GAGAAAGTTTCCAAGGGAAA+AGG | 0.503992 | 1_4:-24149086 | Msa0157210:CDS |
| TTATACTTCCATCCTATGTC+AGG | 0.505546 | 1_4:+24151551 | None:intergenic |
| CACATGAATGATGGTGGAAG+TGG | 0.507359 | 1_4:-24148951 | Msa0157210:CDS |
| GTGCAGCTGGTTGCCGACAA+CGG | 0.510190 | 1_4:-24150704 | Msa0157210:CDS |
| AGATTGGAAGGTTGGTAAGT+GGG | 0.515155 | 1_4:-24151286 | Msa0157210:CDS |
| TCCAACTCTTTGTTAAGACA+TGG | 0.516853 | 1_4:+24150962 | None:intergenic |
| ACTTCAAGAGATTGGAAGGT+TGG | 0.517951 | 1_4:-24151294 | Msa0157210:CDS |
| CTGTCAACAATCTCAAGGAT+TGG | 0.518832 | 1_4:+24150038 | None:intergenic |
| TTTGAATTTGTTGAGGGAGA+AGG | 0.521056 | 1_4:-24150411 | Msa0157210:CDS |
| TGAAGAGGAAGATAATAAAG+AGG | 0.521964 | 1_4:-24148991 | Msa0157210:CDS |
| GGTGAAATCCGTTTCAAATG+AGG | 0.523303 | 1_4:-24151342 | Msa0157210:CDS |
| AAAATCTACTGGAAAGGGAA+AGG | 0.525200 | 1_4:-24149144 | Msa0157210:CDS |
| ACTGGAAAGGGAAAGGGAAA+GGG | 0.526937 | 1_4:-24149137 | Msa0157210:CDS |
| CCATGTTCACTTCTCAAGAA+TGG | 0.527486 | 1_4:-24150295 | Msa0157210:CDS |
| CCCATGTCTTAACAAAGAGT+TGG | 0.527534 | 1_4:-24150963 | Msa0157210:CDS |
| AAATCTACTGGAAAGGGAAA+GGG | 0.528332 | 1_4:-24149143 | Msa0157210:CDS |
| AAGGTTGGTAAGTGGGAAAG+GGG | 0.530248 | 1_4:-24151279 | Msa0157210:CDS |
| AAAGGGAAAGGGAAATCAAG+GGG | 0.533778 | 1_4:-24149126 | Msa0157210:CDS |
| TACTGGAAAGGGAAAGGGAA+AGG | 0.534955 | 1_4:-24149138 | Msa0157210:CDS |
| TCCATCAAAATCTACTGGAA+AGG | 0.541789 | 1_4:-24149150 | Msa0157210:CDS |
| ATCAAGCAATGGTGGAAGCA+AGG | 0.542224 | 1_4:-24150106 | Msa0157210:CDS |
| GTATTACCCTTCTTAGTGGC+CGG | 0.542772 | 1_4:+24151233 | None:intergenic |
| GTTCAATAATGTCCGATGGT+TGG | 0.542782 | 1_4:-24150886 | Msa0157210:CDS |
| TGACGAAGCCAAGGGTAAGA+AGG | 0.542807 | 1_4:-24150255 | Msa0157210:CDS |
| TGGGTTTCTCAACTCATGAT+AGG | 0.543800 | 1_4:+24150982 | None:intergenic |
| TGGTAAGTGGGAAAGGGGCA+AGG | 0.544331 | 1_4:-24151274 | Msa0157210:CDS |
| TCCTTGAGATTGTTGACAGG+AGG | 0.550735 | 1_4:-24150034 | Msa0157210:CDS |
| CACGACTTCAAGAGATTGGA+AGG | 0.551530 | 1_4:-24151298 | Msa0157210:CDS |
| AAACCAACCCTTCCTGACAT+AGG | 0.551809 | 1_4:-24151563 | Msa0157210:CDS |
| AAAGGTGAGTGACGAAGCCA+AGG | 0.551906 | 1_4:-24150264 | Msa0157210:CDS |
| GCACCATCATCTTCTAATGC+CGG | 0.553173 | 1_4:-24151632 | Msa0157210:CDS |
| CAAGGGGCAAAGGGAAAGCA+AGG | 0.553519 | 1_4:-24149110 | Msa0157210:CDS |
| CAACCCTTCCTGACATAGGA+TGG | 0.554812 | 1_4:-24151559 | Msa0157210:CDS |
| GAGATTGGAAGGTTGGTAAG+TGG | 0.556292 | 1_4:-24151287 | Msa0157210:CDS |
| CTTTGTATCGGTCCAACCAT+CGG | 0.558962 | 1_4:+24150874 | None:intergenic |
| CTCTTAATAAACATAGTACC+TGG | 0.559846 | 1_4:+24150815 | None:intergenic |
| ATATATTGATCTGATGCTCA+TGG | 0.559913 | 1_4:-24149378 | Msa0157210:CDS |
| GAGGATACACGTACATCTCC+TGG | 0.560864 | 1_4:-24149780 | Msa0157210:intron |
| AGGGCCAAACAACATCAAAT+GGG | 0.561584 | 1_4:-24151452 | Msa0157210:CDS |
| AGTCTTCCGGCCACTAAGAA+GGG | 0.561768 | 1_4:-24151239 | Msa0157210:intron |
| TAAAGCTTGCTTAACGACAC+CGG | 0.562575 | 1_4:-24151414 | Msa0157210:CDS |
| TGAGATTGTTGACAGGAGGT+GGG | 0.563133 | 1_4:-24150030 | Msa0157210:CDS |
| GCAAGGCGAGAAAGTTTCCA+AGG | 0.566101 | 1_4:-24149093 | Msa0157210:CDS |
| CGATGGTTGGACCGATACAA+AGG | 0.566638 | 1_4:-24150873 | Msa0157210:CDS |
| AGCTAATGAGGAAGCTAGAG+TGG | 0.569343 | 1_4:-24151369 | Msa0157210:CDS |
| TTGCTTAACGACACCGGAGG+AGG | 0.571917 | 1_4:-24151408 | Msa0157210:CDS |
| CAATCCTTGAGATTGTTGAC+AGG | 0.573892 | 1_4:-24150037 | Msa0157210:CDS |
| TGAGGAAGCTAGAGTGGCAA+AGG | 0.574189 | 1_4:-24151363 | Msa0157210:CDS |
| GGATAATACTAATCAAATGT+TGG | 0.574824 | 1_4:-24150942 | Msa0157210:CDS |
| CCAACTCTTTGTTAAGACAT+GGG | 0.575520 | 1_4:+24150963 | None:intergenic |
| AAAGTTTATTACTGATTGGG+GGG | 0.577511 | 1_4:-24149030 | Msa0157210:CDS |
| GCTGCTTGGTGGAATAGGTG+GGG | 0.578425 | 1_4:-24149679 | Msa0157210:CDS |
| ACAAATTCAAAACCACAGAA+TGG | 0.581929 | 1_4:+24150423 | None:intergenic |
| GATATATGAAACTCATTGCA+GGG | 0.583289 | 1_4:+24150126 | None:intergenic |
| TCTTATAAGAGTACTTAGGC+TGG | 0.583735 | 1_4:-24150165 | Msa0157210:CDS |
| GAGCCAAGCAGCTTTGCAGA+AGG | 0.585242 | 1_4:-24149201 | Msa0157210:CDS |
| ACCTCCTGTCAACAATCTCA+AGG | 0.585500 | 1_4:+24150033 | None:intergenic |
| TTTCATCTATAACCATTCTG+TGG | 0.585631 | 1_4:-24150435 | Msa0157210:CDS |
| TATACTTATCCAAATCTGCA+TGG | 0.585773 | 1_4:+24149850 | None:intergenic |
| TTAGCTCATCGGGGTGTGAG+AGG | 0.585792 | 1_4:-24149603 | Msa0157210:CDS |
| ACTTCCATCCTATGTCAGGA+AGG | 0.587027 | 1_4:+24151555 | None:intergenic |
| CTTCCATCCTATGTCAGGAA+GGG | 0.587261 | 1_4:+24151556 | None:intergenic |
| TCAAATGTTGGAGACTAACA+AGG | 0.590739 | 1_4:-24150930 | Msa0157210:CDS |
| GTTCACTTCTCAAGAATGGT+CGG | 0.591321 | 1_4:-24150291 | Msa0157210:CDS |
| TCACCGGCATTAGAAGATGA+TGG | 0.592839 | 1_4:+24151629 | None:intergenic |
| CTCAACTCATGATAGGAAGG+AGG | 0.595896 | 1_4:+24150989 | None:intergenic |
| TTGTGCAGCAGAAGAATCAC+CGG | 0.597962 | 1_4:+24151613 | None:intergenic |
| AAAGATGATGCGTTGTTGGA+TGG | 0.598700 | 1_4:-24149927 | Msa0157210:CDS |
| TTTCATATATCAAGCAATGG+TGG | 0.599019 | 1_4:-24150114 | Msa0157210:CDS |
| CCATTCTTGAGAAGTGAACA+TGG | 0.599117 | 1_4:+24150295 | None:intergenic |
| TTTCTCAACTCATGATAGGA+AGG | 0.600435 | 1_4:+24150986 | None:intergenic |
| TATGAAGTTCGTGTTCGTGA+TGG | 0.601568 | 1_4:-24149314 | Msa0157210:CDS |
| GAAAGGGAAAGGGAAATCAA+GGG | 0.604555 | 1_4:-24149127 | Msa0157210:CDS |
| GAGGCAGAGCACATGAATGA+TGG | 0.605850 | 1_4:-24148960 | Msa0157210:CDS |
| GATGATCCTGAAATTAATGT+TGG | 0.606281 | 1_4:-24149356 | Msa0157210:CDS |
| CAAGGGAAAAGGAAAGAAAG+TGG | 0.607971 | 1_4:-24149075 | Msa0157210:CDS |
| AAATGTCCAGCTGCATGCAA+CGG | 0.610121 | 1_4:+24149990 | None:intergenic |
| TGATTAGACATGGAGTCACA+AGG | 0.610919 | 1_4:-24150376 | Msa0157210:CDS |
| TGAGGCTCAAGATGATGAAG+AGG | 0.611301 | 1_4:-24151324 | Msa0157210:CDS |
| CAAAGTTTATTACTGATTGG+GGG | 0.616522 | 1_4:-24149031 | Msa0157210:CDS |
| GATGGTTGGACCGATACAAA+GGG | 0.622306 | 1_4:-24150872 | Msa0157210:CDS |
| ATGGAAGTATAACAGTGTAA+GGG | 0.622725 | 1_4:-24151540 | Msa0157210:CDS |
| GAGATTGTTGACAGGAGGTG+GGG | 0.629952 | 1_4:-24150029 | Msa0157210:CDS |
| GAGTTTCATATATCAAGCAA+TGG | 0.636888 | 1_4:-24150117 | Msa0157210:CDS |
| GTCTACAGGAGGAATTTCCA+GGG | 0.638802 | 1_4:-24151471 | Msa0157210:CDS |
| TTTATGCTCTTAAAGCTATG+GGG | 0.638889 | 1_4:-24150190 | Msa0157210:CDS |
| TGTTTGTTGGAGTCTACAGG+AGG | 0.639406 | 1_4:-24151482 | Msa0157210:CDS |
| GAAATGGAGTTGATTAGACA+TGG | 0.642103 | 1_4:-24150386 | Msa0157210:CDS |
| GCAGAGCACATGAATGATGG+TGG | 0.658579 | 1_4:-24148957 | Msa0157210:CDS |
| GGTTGTTCAATAATGTCCGA+TGG | 0.658787 | 1_4:-24150890 | Msa0157210:CDS |
| GGCCTCTTATAAGAGTACTT+AGG | 0.659644 | 1_4:-24150169 | Msa0157210:CDS |
| CAAGGCGAGAAAGTTTCCAA+GGG | 0.661318 | 1_4:-24149092 | Msa0157210:CDS |
| TAGGAAGGAGGCTTCAAGTG+AGG | 0.666996 | 1_4:+24151001 | None:intergenic |
| GTAAAGAAGGTTGTAACACA+AGG | 0.668251 | 1_4:-24150473 | Msa0157210:CDS |
| AGAAGCAATAAGGCACAGAG+AGG | 0.676918 | 1_4:-24149799 | Msa0157210:CDS |
| CTAGATGTTGAACTGGCGAG+TGG | 0.684599 | 1_4:-24149251 | Msa0157210:CDS |
| AAGGTGAGTGACGAAGCCAA+GGG | 0.690496 | 1_4:-24150263 | Msa0157210:CDS |
| GCAGCTGGTTGCCGACAACG+GGG | 0.691457 | 1_4:-24150702 | Msa0157210:CDS |
| GTTTGACTGTTAGCTCATCG+GGG | 0.706140 | 1_4:-24149612 | Msa0157210:CDS |
| AGCTTGCTTAACGACACCGG+AGG | 0.726095 | 1_4:-24151411 | Msa0157210:CDS |
| TTAATAAACATAGTACCTGG+CGG | 0.726500 | 1_4:+24150818 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGGAAAAATATTTTTGTAA+AGG | - | chr1_4:24149980-24149999 | Msa0157210:CDS | 15.0% |
| !! | TAAAAGAACATTAAATCCAA+TGG | + | chr1_4:24149373-24149392 | None:intergenic | 20.0% |
| !! | AAGTATTAAAGATAGAGATA+AGG | - | chr1_4:24149429-24149448 | Msa0157210:CDS | 20.0% |
| !! | ATCAAAAAGTTTCAAATTGA+TGG | - | chr1_4:24149526-24149545 | Msa0157210:intron | 20.0% |
| !!! | AAAAGCAATTTTTGATATGT+TGG | - | chr1_4:24149811-24149830 | Msa0157210:CDS | 20.0% |
| !! | GTAATAATACATGATATGTT+TGG | + | chr1_4:24149947-24149966 | None:intergenic | 20.0% |
| !! | TATTACGTTCTTTAATTGTT+TGG | - | chr1_4:24149961-24149980 | Msa0157210:CDS | 20.0% |
| !!! | AAATTAATGTTGGTAGTTTA+TGG | - | chr1_4:24151227-24151246 | Msa0157210:intron | 20.0% |
| !!! | ATTGATTTTAAGAGCTAATG+AGG | - | chr1_4:24149192-24149211 | Msa0157210:CDS | 25.0% |
| !!! | CTCGCTTTTTTTTATCTAAA+TGG | - | chr1_4:24149482-24149501 | Msa0157210:CDS | 25.0% |
| ! | GGATAATACTAATCAAATGT+TGG | - | chr1_4:24149631-24149650 | Msa0157210:CDS | 25.0% |
| !!! | CATATCAAAAATTGCTTTTC+CGG | + | chr1_4:24149810-24149829 | None:intergenic | 25.0% |
| ! | GATTTAATGCTAGAAAAGAT+TGG | - | chr1_4:24150064-24150083 | Msa0157210:CDS | 25.0% |
| ! | AAAAATTCCAAGAGTAAAGA+AGG | - | chr1_4:24150087-24150106 | Msa0157210:CDS | 25.0% |
| !!! | TGGTTCTTATTTTTTGTCTT+AGG | + | chr1_4:24150261-24150280 | None:intergenic | 25.0% |
| ! | TAGTTTGGGTAACTTTAAAT+TGG | - | chr1_4:24150750-24150769 | Msa0157210:CDS | 25.0% |
| ! | AAACTACCAACATTAATTTC+AGG | + | chr1_4:24151226-24151245 | None:intergenic | 25.0% |
| !! | ATGATGATGATGATTTAGAT+TGG | - | chr1_4:24151299-24151318 | Msa0157210:CDS | 25.0% |
| ! | ATCCAAAGTTTATTACTGAT+TGG | - | chr1_4:24151539-24151558 | Msa0157210:CDS | 25.0% |
| !! | TCCAAAGTTTATTACTGATT+GGG | - | chr1_4:24151540-24151559 | Msa0157210:CDS | 25.0% |
| ! | ATGGAAGTATAACAGTGTAA+GGG | - | chr1_4:24149033-24149052 | Msa0157210:CDS | 30.0% |
| ! | TTTTGTATTACCCTTCTTAG+TGG | + | chr1_4:24149347-24149366 | None:intergenic | 30.0% |
| ACTAAGAAGGGTAATACAAA+AGG | - | chr1_4:24149346-24149365 | Msa0157210:CDS | 30.0% | |
| ! | AATGTTCTTTTAAACACCTG+AGG | - | chr1_4:24149381-24149400 | Msa0157210:CDS | 30.0% |
| AAAAAAAGCGAGCTATATAC+TGG | + | chr1_4:24149474-24149493 | None:intergenic | 30.0% | |
| ! | AAATTGATGGTTGAAGCAAT+TGG | - | chr1_4:24149539-24149558 | Msa0157210:intron | 30.0% |
| TTAATAAACATAGTACCTGG+CGG | + | chr1_4:24149758-24149777 | None:intergenic | 30.0% | |
| CTCTTAATAAACATAGTACC+TGG | + | chr1_4:24149761-24149780 | None:intergenic | 30.0% | |
| GATATGTTGGATGAATTTGT+TGG | - | chr1_4:24149824-24149843 | Msa0157210:CDS | 30.0% | |
| GTTTGGCATAAAGTAATTGA+AGG | + | chr1_4:24149930-24149949 | None:intergenic | 30.0% | |
| TTTCATCTATAACCATTCTG+TGG | - | chr1_4:24150138-24150157 | Msa0157210:CDS | 30.0% | |
| ACAAATTCAAAACCACAGAA+TGG | + | chr1_4:24150153-24150172 | None:intergenic | 30.0% | |
| !!! | TGTGGTTTTGAATTTGTTGA+GGG | - | chr1_4:24150156-24150175 | Msa0157210:CDS | 30.0% |
| CAAACTTTCTTCAATTGCAA+AGG | - | chr1_4:24150227-24150246 | Msa0157210:CDS | 30.0% | |
| TGTTTATGCTCTTAAAGCTA+TGG | - | chr1_4:24150381-24150400 | Msa0157210:CDS | 30.0% | |
| GTTTATGCTCTTAAAGCTAT+GGG | - | chr1_4:24150382-24150401 | Msa0157210:CDS | 30.0% | |
| TTTATGCTCTTAAAGCTATG+GGG | - | chr1_4:24150383-24150402 | Msa0157210:CDS | 30.0% | |
| GATATATGAAACTCATTGCA+GGG | + | chr1_4:24150450-24150469 | None:intergenic | 30.0% | |
| TGATATATGAAACTCATTGC+AGG | + | chr1_4:24150451-24150470 | None:intergenic | 30.0% | |
| GAGTTTCATATATCAAGCAA+TGG | - | chr1_4:24150456-24150475 | Msa0157210:CDS | 30.0% | |
| TTTCATATATCAAGCAATGG+TGG | - | chr1_4:24150459-24150478 | Msa0157210:CDS | 30.0% | |
| !! | GGATTGTTATAAAAGTGCTT+CGG | + | chr1_4:24150616-24150635 | None:intergenic | 30.0% |
| TATACTTATCCAAATCTGCA+TGG | + | chr1_4:24150726-24150745 | None:intergenic | 30.0% | |
| ATGCAGATTTGGATAAGTAT+AGG | - | chr1_4:24150725-24150744 | Msa0157210:CDS | 30.0% | |
| TGCAGATTTGGATAAGTATA+GGG | - | chr1_4:24150726-24150745 | Msa0157210:CDS | 30.0% | |
| TTAAATTGGCAGAAGCAATA+AGG | - | chr1_4:24150764-24150783 | Msa0157210:CDS | 30.0% | |
| ATAGTACGTAACTTCAGATT+TGG | + | chr1_4:24150930-24150949 | None:intergenic | 30.0% | |
| TTCACTCCAAGAAAAGAAAT+AGG | - | chr1_4:24151095-24151114 | Msa0157210:intron | 30.0% | |
| CAAGTATAACCAAACTTTGA+AGG | - | chr1_4:24151153-24151172 | Msa0157210:intron | 30.0% | |
| ATATATTGATCTGATGCTCA+TGG | - | chr1_4:24151195-24151214 | Msa0157210:intron | 30.0% | |
| GATGATCCTGAAATTAATGT+TGG | - | chr1_4:24151217-24151236 | Msa0157210:intron | 30.0% | |
| !! | TGTTGGTAGTTTATGGTTAT+TGG | - | chr1_4:24151234-24151253 | Msa0157210:intron | 30.0% |
| !! | GTTGGTAGTTTATGGTTATT+GGG | - | chr1_4:24151235-24151254 | Msa0157210:intron | 30.0% |
| ! | CCAAAGTTTATTACTGATTG+GGG | - | chr1_4:24151541-24151560 | Msa0157210:CDS | 30.0% |
| ! | CAAAGTTTATTACTGATTGG+GGG | - | chr1_4:24151542-24151561 | Msa0157210:CDS | 30.0% |
| ! | AAAGTTTATTACTGATTGGG+GGG | - | chr1_4:24151543-24151562 | Msa0157210:CDS | 30.0% |
| TGAAGAGGAAGATAATAAAG+AGG | - | chr1_4:24151582-24151601 | Msa0157210:CDS | 30.0% | |
| ! | AATCTGTTGCTTCCTCTATT+GGG | - | chr1_4:24148981-24149000 | Msa0157210:CDS | 35.0% |
| TTATACTTCCATCCTATGTC+AGG | + | chr1_4:24149025-24149044 | None:intergenic | 35.0% | |
| ! | GATGGAAGTATAACAGTGTA+AGG | - | chr1_4:24149032-24149051 | Msa0157210:CDS | 35.0% |
| CACGTGTGATTATTGTTTGT+TGG | - | chr1_4:24149078-24149097 | Msa0157210:CDS | 35.0% | |
| ! | TATTGTTTGTTGGAGTCTAC+AGG | - | chr1_4:24149088-24149107 | Msa0157210:CDS | 35.0% |
| AAAATCAATTTCACCTCCTC+CGG | + | chr1_4:24149181-24149200 | None:intergenic | 35.0% | |
| ATCTTGAGCCTCATTTGAAA+CGG | + | chr1_4:24149242-24149261 | None:intergenic | 35.0% | |
| GTTGAAGCAATTGGTCAATA+TGG | - | chr1_4:24149548-24149567 | Msa0157210:intron | 35.0% | |
| TTTCTCAACTCATGATAGGA+AGG | + | chr1_4:24149590-24149609 | None:intergenic | 35.0% | |
| CCAACTCTTTGTTAAGACAT+GGG | + | chr1_4:24149613-24149632 | None:intergenic | 35.0% | |
| TCCAACTCTTTGTTAAGACA+TGG | + | chr1_4:24149614-24149633 | None:intergenic | 35.0% | |
| TCAAATGTTGGAGACTAACA+AGG | - | chr1_4:24149643-24149662 | Msa0157210:CDS | 35.0% | |
| CAATGTTCTTCCCTTTGTAT+CGG | + | chr1_4:24149714-24149733 | None:intergenic | 35.0% | |
| ! | TTTTCCGGTTTTTACTTCTG+AGG | + | chr1_4:24149795-24149814 | None:intergenic | 35.0% |
| !! | GATGAATTTGTTGGAGAGAT+TGG | - | chr1_4:24149833-24149852 | Msa0157210:CDS | 35.0% |
| ! | CATGGAGTCCAAAAGATTTT+CGG | + | chr1_4:24150028-24150047 | None:intergenic | 35.0% |
| GTTACAACCTTCTTTACTCT+TGG | + | chr1_4:24150097-24150116 | None:intergenic | 35.0% | |
| GTAAAGAAGGTTGTAACACA+AGG | - | chr1_4:24150100-24150119 | Msa0157210:CDS | 35.0% | |
| !! | ACACAAGGAATTAGTCTTGT+CGG | - | chr1_4:24150115-24150134 | Msa0157210:CDS | 35.0% |
| !!! | CTGTGGTTTTGAATTTGTTG+AGG | - | chr1_4:24150155-24150174 | Msa0157210:CDS | 35.0% |
| !! | TTTGAATTTGTTGAGGGAGA+AGG | - | chr1_4:24150162-24150181 | Msa0157210:CDS | 35.0% |
| ! | GAAATGGAGTTGATTAGACA+TGG | - | chr1_4:24150187-24150206 | Msa0157210:CDS | 35.0% |
| ! | TTGTTCTTCAAGTCGCATTT+TGG | - | chr1_4:24150350-24150369 | Msa0157210:CDS | 35.0% |
| ! | TGTTCTTCAAGTCGCATTTT+GGG | - | chr1_4:24150351-24150370 | Msa0157210:CDS | 35.0% |
| AGCCTAAGTACTCTTATAAG+AGG | + | chr1_4:24150409-24150428 | None:intergenic | 35.0% | |
| !! | TCTTATAAGAGTACTTAGGC+TGG | - | chr1_4:24150408-24150427 | Msa0157210:CDS | 35.0% |
| GCATCATCTTTATCTATTGC+TGG | + | chr1_4:24150637-24150656 | None:intergenic | 35.0% | |
| AGATAAAGATGATGCGTTGT+TGG | - | chr1_4:24150642-24150661 | Msa0157210:intron | 35.0% | |
| TAGAAAGCTTTCTTCTTCAG+TGG | - | chr1_4:24150684-24150703 | Msa0157210:CDS | 35.0% | |
| !! | GATAAGTATAGGGCTAGTTT+GGG | - | chr1_4:24150736-24150755 | Msa0157210:CDS | 35.0% |
| CGAAATAGTAATCACTTACC+AGG | + | chr1_4:24150814-24150833 | None:intergenic | 35.0% | |
| TTAATTGCATTTCAGCTGCT+TGG | - | chr1_4:24150880-24150899 | Msa0157210:CDS | 35.0% | |
| !! | TTCGAGCCTATTTCTTTTCT+TGG | + | chr1_4:24151104-24151123 | None:intergenic | 35.0% |
| ! | CACAGTTTTCCTTCAAAGTT+TGG | + | chr1_4:24151165-24151184 | None:intergenic | 35.0% |
| TGGCTCCTATTGTTGAATAA+GGG | + | chr1_4:24151358-24151377 | None:intergenic | 35.0% | |
| TTGGCTCCTATTGTTGAATA+AGG | + | chr1_4:24151359-24151378 | None:intergenic | 35.0% | |
| TCCATCAAAATCTACTGGAA+AGG | - | chr1_4:24151423-24151442 | Msa0157210:CDS | 35.0% | |
| CCATCAAAATCTACTGGAAA+GGG | - | chr1_4:24151424-24151443 | Msa0157210:CDS | 35.0% | |
| AAAATCTACTGGAAAGGGAA+AGG | - | chr1_4:24151429-24151448 | Msa0157210:CDS | 35.0% | |
| AAATCTACTGGAAAGGGAAA+GGG | - | chr1_4:24151430-24151449 | Msa0157210:CDS | 35.0% | |
| CCCCAATCAGTAATAAACTT+TGG | + | chr1_4:24151544-24151563 | None:intergenic | 35.0% | |
| TGAAGAAAAAGAGGATGAAG+AGG | - | chr1_4:24151567-24151586 | Msa0157210:CDS | 35.0% | |
| GGAAGATAATAAAGAGGAAG+AGG | - | chr1_4:24151588-24151607 | Msa0157210:CDS | 35.0% | |
| TAATAAAGAGGAAGAGGATG+AGG | - | chr1_4:24151594-24151613 | Msa0157210:CDS | 35.0% | |
| ! | CAATCTGTTGCTTCCTCTAT+TGG | - | chr1_4:24148980-24148999 | Msa0157210:CDS | 40.0% |
| AGGGCCAAACAACATCAAAT+GGG | - | chr1_4:24149121-24149140 | Msa0157210:CDS | 40.0% | |
| CACTCCCATTTGATGTTGTT+TGG | + | chr1_4:24149128-24149147 | None:intergenic | 40.0% | |
| ! | TAAAGCTTGCTTAACGACAC+CGG | - | chr1_4:24149159-24149178 | Msa0157210:CDS | 40.0% |
| GGTGAAATCCGTTTCAAATG+AGG | - | chr1_4:24149231-24149250 | Msa0157210:CDS | 40.0% | |
| ACTTCAAGAGATTGGAAGGT+TGG | - | chr1_4:24149279-24149298 | Msa0157210:CDS | 40.0% | |
| !! | AGATTGGAAGGTTGGTAAGT+GGG | - | chr1_4:24149287-24149306 | Msa0157210:CDS | 40.0% |
| GGGTAATACAAAAGGTCCAT+TGG | - | chr1_4:24149354-24149373 | Msa0157210:CDS | 40.0% | |
| TTAAACACCTGAGGCAACAT+TGG | - | chr1_4:24149390-24149409 | Msa0157210:CDS | 40.0% | |
| TAAACACCTGAGGCAACATT+GGG | - | chr1_4:24149391-24149410 | Msa0157210:CDS | 40.0% | |
| TGGGTTTCTCAACTCATGAT+AGG | + | chr1_4:24149594-24149613 | None:intergenic | 40.0% | |
| CCCATGTCTTAACAAAGAGT+TGG | - | chr1_4:24149610-24149629 | Msa0157210:CDS | 40.0% | |
| AAGGCAGAAGCAGACAAATA+TGG | - | chr1_4:24149662-24149681 | Msa0157210:CDS | 40.0% | |
| GGTTGTTCAATAATGTCCGA+TGG | - | chr1_4:24149683-24149702 | Msa0157210:intron | 40.0% | |
| GTTCAATAATGTCCGATGGT+TGG | - | chr1_4:24149687-24149706 | Msa0157210:intron | 40.0% | |
| ! | TTTTTAATCAACTCTCCGCC+AGG | - | chr1_4:24149740-24149759 | Msa0157210:intron | 40.0% |
| GCTTCCTCAGAAGTAAAAAC+CGG | - | chr1_4:24149788-24149807 | Msa0157210:CDS | 40.0% | |
| CTTACCGGCCAAAACATAAT+TGG | + | chr1_4:24149897-24149916 | None:intergenic | 40.0% | |
| !!! | CAATTATGTTTTGGCCGGTA+AGG | - | chr1_4:24149895-24149914 | Msa0157210:CDS | 40.0% |
| GAAGGAAGTAGAAACCTTAC+CGG | + | chr1_4:24149912-24149931 | None:intergenic | 40.0% | |
| ! | CATCGAGACCGAAAATCTTT+TGG | - | chr1_4:24150017-24150036 | Msa0157210:CDS | 40.0% |
| TCTATACAATGTGCTGCACA+TGG | + | chr1_4:24150046-24150065 | None:intergenic | 40.0% | |
| TGATTAGACATGGAGTCACA+AGG | - | chr1_4:24150197-24150216 | Msa0157210:CDS | 40.0% | |
| CCATTCTTGAGAAGTGAACA+TGG | + | chr1_4:24150281-24150300 | None:intergenic | 40.0% | |
| CCATGTTCACTTCTCAAGAA+TGG | - | chr1_4:24150278-24150297 | Msa0157210:CDS | 40.0% | |
| GTTCACTTCTCAAGAATGGT+CGG | - | chr1_4:24150282-24150301 | Msa0157210:CDS | 40.0% | |
| TCAAGAATGGTCGGACTTAA+AGG | - | chr1_4:24150291-24150310 | Msa0157210:CDS | 40.0% | |
| !! | GGCCTCTTATAAGAGTACTT+AGG | - | chr1_4:24150404-24150423 | Msa0157210:CDS | 40.0% |
| CTGTCAACAATCTCAAGGAT+TGG | + | chr1_4:24150538-24150557 | None:intergenic | 40.0% | |
| CAATCCTTGAGATTGTTGAC+AGG | - | chr1_4:24150536-24150555 | Msa0157210:intron | 40.0% | |
| AAAGATGATGCGTTGTTGGA+TGG | - | chr1_4:24150646-24150665 | Msa0157210:intron | 40.0% | |
| TGATGACATCCATGCAGATT+TGG | - | chr1_4:24150714-24150733 | Msa0157210:CDS | 40.0% | |
| !! | GGATAAGTATAGGGCTAGTT+TGG | - | chr1_4:24150735-24150754 | Msa0157210:CDS | 40.0% |
| GAGTTTGACTGTTAGCTCAT+CGG | - | chr1_4:24150959-24150978 | Msa0157210:CDS | 40.0% | |
| AGTTTGACTGTTAGCTCATC+GGG | - | chr1_4:24150960-24150979 | Msa0157210:CDS | 40.0% | |
| TATGAAGTTCGTGTTCGTGA+TGG | - | chr1_4:24151259-24151278 | Msa0157210:CDS | 40.0% | |
| ! | AGATTGGCTAGATGTTGAAC+TGG | - | chr1_4:24151315-24151334 | Msa0157210:CDS | 40.0% |
| CTGAGCCCTTATTCAACAAT+AGG | - | chr1_4:24151350-24151369 | Msa0157210:CDS | 40.0% | |
| ! | CCCTTTCCAGTAGATTTTGA+TGG | + | chr1_4:24151427-24151446 | None:intergenic | 40.0% |
| GAAAGGGAAAGGGAAATCAA+GGG | - | chr1_4:24151446-24151465 | Msa0157210:CDS | 40.0% | |
| AAAGGGAAAGGGAAATCAAG+GGG | - | chr1_4:24151447-24151466 | Msa0157210:CDS | 40.0% | |
| GAGAAAGTTTCCAAGGGAAA+AGG | - | chr1_4:24151487-24151506 | Msa0157210:CDS | 40.0% | |
| ! | CACTTTCTTTCCTTTTCCCT+TGG | + | chr1_4:24151500-24151519 | None:intergenic | 40.0% |
| CAAGGGAAAAGGAAAGAAAG+TGG | - | chr1_4:24151498-24151517 | Msa0157210:CDS | 40.0% | |
| GCACCATCATCTTCTAATGC+CGG | - | chr1_4:24148941-24148960 | Msa0157210:CDS | 45.0% | |
| TCACCGGCATTAGAAGATGA+TGG | + | chr1_4:24148947-24148966 | None:intergenic | 45.0% | |
| TTGTGCAGCAGAAGAATCAC+CGG | + | chr1_4:24148963-24148982 | None:intergenic | 45.0% | |
| AAACCAACCCTTCCTGACAT+AGG | - | chr1_4:24149010-24149029 | Msa0157210:CDS | 45.0% | |
| CTTCCATCCTATGTCAGGAA+GGG | + | chr1_4:24149020-24149039 | None:intergenic | 45.0% | |
| ACTTCCATCCTATGTCAGGA+AGG | + | chr1_4:24149021-24149040 | None:intergenic | 45.0% | |
| ! | TGTTTGTTGGAGTCTACAGG+AGG | - | chr1_4:24149091-24149110 | Msa0157210:CDS | 45.0% |
| AGTCTACAGGAGGAATTTCC+AGG | - | chr1_4:24149101-24149120 | Msa0157210:CDS | 45.0% | |
| GTCTACAGGAGGAATTTCCA+GGG | - | chr1_4:24149102-24149121 | Msa0157210:CDS | 45.0% | |
| ! | CATTTGATGTTGTTTGGCCC+TGG | + | chr1_4:24149122-24149141 | None:intergenic | 45.0% |
| CAGGGCCAAACAACATCAAA+TGG | - | chr1_4:24149120-24149139 | Msa0157210:CDS | 45.0% | |
| CAACATCAAATGGGAGTGAC+AGG | - | chr1_4:24149130-24149149 | Msa0157210:CDS | 45.0% | |
| AGCTAATGAGGAAGCTAGAG+TGG | - | chr1_4:24149204-24149223 | Msa0157210:CDS | 45.0% | |
| TGAGGCTCAAGATGATGAAG+AGG | - | chr1_4:24149249-24149268 | Msa0157210:CDS | 45.0% | |
| GTAGCACGACTTCAAGAGAT+TGG | - | chr1_4:24149271-24149290 | Msa0157210:CDS | 45.0% | |
| CACGACTTCAAGAGATTGGA+AGG | - | chr1_4:24149275-24149294 | Msa0157210:CDS | 45.0% | |
| !! | GAGATTGGAAGGTTGGTAAG+TGG | - | chr1_4:24149286-24149305 | Msa0157210:CDS | 45.0% |
| !! | GAAGGTTGGTAAGTGGGAAA+GGG | - | chr1_4:24149293-24149312 | Msa0157210:CDS | 45.0% |
| !! | AAGGTTGGTAAGTGGGAAAG+GGG | - | chr1_4:24149294-24149313 | Msa0157210:CDS | 45.0% |
| GACTGAATTGGAGAGTCTTC+CGG | - | chr1_4:24149321-24149340 | Msa0157210:CDS | 45.0% | |
| GTATTACCCTTCTTAGTGGC+CGG | + | chr1_4:24149343-24149362 | None:intergenic | 45.0% | |
| CTCAACTCATGATAGGAAGG+AGG | + | chr1_4:24149587-24149606 | None:intergenic | 45.0% | |
| ! | CTTTGTATCGGTCCAACCAT+CGG | + | chr1_4:24149702-24149721 | None:intergenic | 45.0% |
| GATGGTTGGACCGATACAAA+GGG | - | chr1_4:24149701-24149720 | Msa0157210:intron | 45.0% | |
| AACATAATTGGCCCCGTTGT+CGG | + | chr1_4:24149885-24149904 | None:intergenic | 45.0% | |
| ! | CAACGGGGCCAATTATGTTT+TGG | - | chr1_4:24149886-24149905 | Msa0157210:CDS | 45.0% |
| AGAAGTTGCCTTCTTACCCT+TGG | + | chr1_4:24150329-24150348 | None:intergenic | 45.0% | |
| ! | ATCAAGCAATGGTGGAAGCA+AGG | - | chr1_4:24150467-24150486 | Msa0157210:CDS | 45.0% |
| TCCTTGAGATTGTTGACAGG+AGG | - | chr1_4:24150539-24150558 | Msa0157210:intron | 45.0% | |
| ACCTCCTGTCAACAATCTCA+AGG | + | chr1_4:24150543-24150562 | None:intergenic | 45.0% | |
| TTGAGATTGTTGACAGGAGG+TGG | - | chr1_4:24150542-24150561 | Msa0157210:intron | 45.0% | |
| TGAGATTGTTGACAGGAGGT+GGG | - | chr1_4:24150543-24150562 | Msa0157210:intron | 45.0% | |
| AAATGTCCAGCTGCATGCAA+CGG | + | chr1_4:24150586-24150605 | None:intergenic | 45.0% | |
| AGAAGCAATAAGGCACAGAG+AGG | - | chr1_4:24150774-24150793 | Msa0157210:CDS | 45.0% | |
| ATTGCATTTCAGCTGCTTGG+TGG | - | chr1_4:24150883-24150902 | Msa0157210:CDS | 45.0% | |
| ! | TTTCAGCTGCTTGGTGGAAT+AGG | - | chr1_4:24150889-24150908 | Msa0157210:CDS | 45.0% |
| GTTTGACTGTTAGCTCATCG+GGG | - | chr1_4:24150961-24150980 | Msa0157210:CDS | 45.0% | |
| !! | GTAGATTTTGATGGAGCTGC+AGG | + | chr1_4:24151418-24151437 | None:intergenic | 45.0% |
| GCAGCTCCATCAAAATCTAC+TGG | - | chr1_4:24151418-24151437 | Msa0157210:CDS | 45.0% | |
| TACTGGAAAGGGAAAGGGAA+AGG | - | chr1_4:24151435-24151454 | Msa0157210:CDS | 45.0% | |
| ACTGGAAAGGGAAAGGGAAA+GGG | - | chr1_4:24151436-24151455 | Msa0157210:CDS | 45.0% | |
| GGAAAGGGAAAGGGAAATCA+AGG | - | chr1_4:24151445-24151464 | Msa0157210:CDS | 45.0% | |
| AAAGGGAAATCAAGGGGCAA+AGG | - | chr1_4:24151453-24151472 | Msa0157210:CDS | 45.0% | |
| AAGGGAAATCAAGGGGCAAA+GGG | - | chr1_4:24151454-24151473 | Msa0157210:CDS | 45.0% | |
| CAAGGCGAGAAAGTTTCCAA+GGG | - | chr1_4:24151481-24151500 | Msa0157210:CDS | 45.0% | |
| TTGGGGGGATGAAGAAAAAG+AGG | - | chr1_4:24151558-24151577 | Msa0157210:CDS | 45.0% | |
| !! | CACATGAATGATGGTGGAAG+TGG | - | chr1_4:24151622-24151641 | Msa0157210:CDS | 45.0% |
| !! | AATCAAATTAAAAAAAAATT+TGG | - | chr1_4:24150490-24150509 | Msa0157210:CDS | 5.0% |
| ! | TGTTGCTTCCTCTATTGGGC+TGG | - | chr1_4:24148985-24149004 | Msa0157210:CDS | 50.0% |
| TGGTTTGACCAGCCCAATAG+AGG | + | chr1_4:24148996-24149015 | None:intergenic | 50.0% | |
| CATCCTATGTCAGGAAGGGT+TGG | + | chr1_4:24149016-24149035 | None:intergenic | 50.0% | |
| CAACCCTTCCTGACATAGGA+TGG | - | chr1_4:24149014-24149033 | Msa0157210:CDS | 50.0% | |
| TGAGGAAGCTAGAGTGGCAA+AGG | - | chr1_4:24149210-24149229 | Msa0157210:CDS | 50.0% | |
| !! | GGAAGGTTGGTAAGTGGGAA+AGG | - | chr1_4:24149292-24149311 | Msa0157210:CDS | 50.0% |
| GAAAGGGGCAAGGACTGAAT+TGG | - | chr1_4:24149309-24149328 | Msa0157210:CDS | 50.0% | |
| AGTCTTCCGGCCACTAAGAA+GGG | - | chr1_4:24149334-24149353 | Msa0157210:CDS | 50.0% | |
| ! | CCTTTTCCCAATGTTGCCTC+AGG | + | chr1_4:24149400-24149419 | None:intergenic | 50.0% |
| CCTGAGGCAACATTGGGAAA+AGG | - | chr1_4:24149397-24149416 | Msa0157210:CDS | 50.0% | |
| TAGGAAGGAGGCTTCAAGTG+AGG | + | chr1_4:24149575-24149594 | None:intergenic | 50.0% | |
| CGATGGTTGGACCGATACAA+AGG | - | chr1_4:24149700-24149719 | Msa0157210:intron | 50.0% | |
| !!! | GGGGCCAATTATGTTTTGGC+CGG | - | chr1_4:24149890-24149909 | Msa0157210:CDS | 50.0% |
| GTTGAGGGAGAAGGCTGAAA+TGG | - | chr1_4:24150171-24150190 | Msa0157210:CDS | 50.0% | |
| AAAGGTGAGTGACGAAGCCA+AGG | - | chr1_4:24150309-24150328 | Msa0157210:CDS | 50.0% | |
| AAGGTGAGTGACGAAGCCAA+GGG | - | chr1_4:24150310-24150329 | Msa0157210:CDS | 50.0% | |
| TGACGAAGCCAAGGGTAAGA+AGG | - | chr1_4:24150318-24150337 | Msa0157210:CDS | 50.0% | |
| GAGATTGTTGACAGGAGGTG+GGG | - | chr1_4:24150544-24150563 | Msa0157210:intron | 50.0% | |
| GAGGATACACGTACATCTCC+TGG | - | chr1_4:24150793-24150812 | Msa0157210:CDS | 50.0% | |
| ! | AGCTGCTTGGTGGAATAGGT+GGG | - | chr1_4:24150893-24150912 | Msa0157210:CDS | 50.0% |
| CTAGATGTTGAACTGGCGAG+TGG | - | chr1_4:24151322-24151341 | Msa0157210:CDS | 50.0% | |
| GCAAGGCGAGAAAGTTTCCA+AGG | - | chr1_4:24151480-24151499 | Msa0157210:CDS | 50.0% | |
| GAGGCAGAGCACATGAATGA+TGG | - | chr1_4:24151613-24151632 | Msa0157210:CDS | 50.0% | |
| GCAGAGCACATGAATGATGG+TGG | - | chr1_4:24151616-24151635 | Msa0157210:CDS | 50.0% | |
| ! | AGCTTGCTTAACGACACCGG+AGG | - | chr1_4:24149162-24149181 | Msa0157210:CDS | 55.0% |
| TTGCTTAACGACACCGGAGG+AGG | - | chr1_4:24149165-24149184 | Msa0157210:CDS | 55.0% | |
| TGGTAAGTGGGAAAGGGGCA+AGG | - | chr1_4:24149299-24149318 | Msa0157210:CDS | 55.0% | |
| GAGTCTTCCGGCCACTAAGA+AGG | - | chr1_4:24149333-24149352 | Msa0157210:CDS | 55.0% | |
| CGAAAGTCGTGTTGTGCAGC+TGG | - | chr1_4:24149856-24149875 | Msa0157210:CDS | 55.0% | |
| CATCATCCGTTGCATGCAGC+TGG | - | chr1_4:24150577-24150596 | Msa0157210:intron | 55.0% | |
| ! | CAGCTGCTTGGTGGAATAGG+TGG | - | chr1_4:24150892-24150911 | Msa0157210:CDS | 55.0% |
| ! | GCTGCTTGGTGGAATAGGTG+GGG | - | chr1_4:24150894-24150913 | Msa0157210:CDS | 55.0% |
| TTAGCTCATCGGGGTGTGAG+AGG | - | chr1_4:24150970-24150989 | Msa0157210:CDS | 55.0% | |
| CATCGGGGTGTGAGAGGAAT+TGG | - | chr1_4:24150976-24150995 | Msa0157210:CDS | 55.0% | |
| GAGCCAAGCAGCTTTGCAGA+AGG | - | chr1_4:24151372-24151391 | Msa0157210:CDS | 55.0% | |
| CTGCCTTCTGCAAAGCTGCT+TGG | + | chr1_4:24151378-24151397 | None:intergenic | 55.0% | |
| CAAGGGGCAAAGGGAAAGCA+AGG | - | chr1_4:24151463-24151482 | Msa0157210:CDS | 55.0% | |
| GTGCAGCTGGTTGCCGACAA+CGG | - | chr1_4:24149869-24149888 | Msa0157210:CDS | 60.0% | |
| TGCAGCTGGTTGCCGACAAC+GGG | - | chr1_4:24149870-24149889 | Msa0157210:CDS | 60.0% | |
| GCAGCTGGTTGCCGACAACG+GGG | - | chr1_4:24149871-24149890 | Msa0157210:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 24148920 | 24151675 | 24148920 | ID=Msa0157210;Name=Msa0157210 |
| chr1_4 | mRNA | 24148920 | 24151675 | 24148920 | ID=Msa0157210-mRNA-1;Parent=Msa0157210;Name=Msa0157210-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|0.6|1|1|5|0|751 |
| chr1_4 | exon | 24151240 | 24151675 | 24151240 | ID=Msa0157210-mRNA-1:exon:8401;Parent=Msa0157210-mRNA-1 |
| chr1_4 | exon | 24150684 | 24151040 | 24150684 | ID=Msa0157210-mRNA-1:exon:8400;Parent=Msa0157210-mRNA-1 |
| chr1_4 | exon | 24149781 | 24150542 | 24149781 | ID=Msa0157210-mRNA-1:exon:8399;Parent=Msa0157210-mRNA-1 |
| chr1_4 | exon | 24149582 | 24149700 | 24149582 | ID=Msa0157210-mRNA-1:exon:8398;Parent=Msa0157210-mRNA-1 |
| chr1_4 | exon | 24148920 | 24149501 | 24148920 | ID=Msa0157210-mRNA-1:exon:8397;Parent=Msa0157210-mRNA-1 |
| chr1_4 | CDS | 24151240 | 24151675 | 24151240 | ID=Msa0157210-mRNA-1:cds;Parent=Msa0157210-mRNA-1 |
| chr1_4 | CDS | 24150684 | 24151040 | 24150684 | ID=Msa0157210-mRNA-1:cds;Parent=Msa0157210-mRNA-1 |
| chr1_4 | CDS | 24149781 | 24150542 | 24149781 | ID=Msa0157210-mRNA-1:cds;Parent=Msa0157210-mRNA-1 |
| chr1_4 | CDS | 24149582 | 24149700 | 24149582 | ID=Msa0157210-mRNA-1:cds;Parent=Msa0157210-mRNA-1 |
| chr1_4 | CDS | 24148920 | 24149501 | 24148920 | ID=Msa0157210-mRNA-1:cds;Parent=Msa0157210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
