AlfalfaGEDB | Msa0021280

M. sativa cultivar zhongmu-4 / Msa0021280

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021280	sp\|C0LGF5\|RGI5_ARATH	75.582	1073	250	7	7	1073	6	1072	0.0	1504

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021280	Msa0021330	0.893089	8.692186e-75	-8.615850e-47
Msa0021280	Msa0032130	0.842865	1.992067e-58	-8.615850e-47
Msa0021280	Msa0032390	0.844761	6.187917e-59	-8.615850e-47
Msa0021280	Msa0085900	0.853286	2.642774e-61	-8.615850e-47
Msa0021280	Msa0185690	0.837409	5.286790e-57	-8.615850e-47
Msa0021280	Msa0260980	0.811448	6.964921e-51	-8.615850e-47
Msa0021280	Msa0530660	0.816282	5.992788e-52	-8.615850e-47
Msa0021280	Msa0587180	0.828513	8.621591e-55	-8.615850e-47
Msa0021280	Msa0626980	0.817841	2.674744e-52	-8.615850e-47
Msa0021280	Msa0627360	0.820526	6.547303e-53	-8.615850e-47

Showing 1 to 10 of 15 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021280	MtrunA17_Chr1g0201241	84.665	1076	112	5	1	1075	1	1024	0.0	1716
Msa0021280	MtrunA17_Chr7g0237821	47.469	1047	514	10	38	1058	43	1079	0.0	929
Msa0021280	MtrunA17_Chr3g0126181	46.076	1083	542	14	4	1068	1	1059	0.0	858
Msa0021280	MtrunA17_Chr4g0058761	45.810	1050	549	10	26	1066	26	1064	0.0	832
Msa0021280	MtrunA17_Chr3g0102901	44.636	1044	536	12	26	1053	38	1055	0.0	780
Msa0021280	MtrunA17_Chr2g0312651	39.633	1090	593	19	10	1053	16	1086	0.0	692
Msa0021280	MtrunA17_Chr5g0419721	44.534	869	443	10	212	1062	82	929	0.0	674
Msa0021280	MtrunA17_Chr5g0419721	47.177	496	232	3	47	542	63	528	4.27e-120	393
Msa0021280	MtrunA17_Chr1g0189871	38.991	1090	600	18	5	1049	7	1076	0.0	662
Msa0021280	MtrunA17_Chr1g0169841	39.122	1071	592	18	27	1051	32	1088	0.0	661

Showing 1 to 10 of 1,431 entries

Previous1 2 3 4 5…144Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0021280	AT1G34110.1	75.582	1073	250	7	7	1073	6	1072	1504
Msa0021280	AT1G34110.2	75.520	1058	248	6	7	1058	6	1058	1489
Msa0021280	AT3G24240.1	47.889	1042	508	11	47	1071	60	1083	929
Msa0021280	AT5G48940.1	46.574	1080	537	11	1	1060	15	1074	908
Msa0021280	AT5G56040.2	45.566	1060	529	13	26	1069	27	1054	851
Msa0021280	AT4G26540.1	44.717	1060	542	13	26	1069	24	1055	796
Msa0021280	AT5G56040.1	46.368	936	459	11	26	945	27	935	753
Msa0021280	AT1G17230.1	38.986	1085	606	14	10	1053	7	1076	688
Msa0021280	AT1G17230.2	38.986	1085	606	14	10	1053	7	1076	688
Msa0021280	AT5G63930.1	38.884	1093	602	17	25	1066	25	1102	672

Showing 1 to 10 of 1,315 entries

Previous1 2 3 4 5…132Next

Find 221 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAATTGAAGAGAAGAG+AGG	0.636701	1_1:+37685810	None:intergenic
AACAAGCAAAGGAGATGAAA+TGG	0.459838	1_1:-37683803	Msa0021280:CDS
AACAGTTTGAAATTTCAGAA+GGG	0.579937	1_1:+37685321	None:intergenic
AACATGGTGTTGATGTTGAA+GGG	0.623176	1_1:+37686077	None:intergenic
AACTTACTAGTTTGCTTCTT+TGG	0.145016	1_1:-37685367	Msa0021280:CDS
AAGAATGGAGTTACTGGAAT+AGG	0.349988	1_1:+37684246	None:intergenic
AAGAGCGACGTGTACAGTTA+TGG	0.419445	1_1:-37683071	Msa0021280:CDS
AAGCTGAAGCATTGTTAAAG+AGG	0.474722	1_1:+37685958	None:intergenic
AAGCTTTGGAAAACAAGCAA+AGG	0.594275	1_1:-37683814	Msa0021280:CDS
AAGGGAATAGGAACTTAGAC+TGG	0.471707	1_1:-37683636	Msa0021280:CDS

Showing 1 to 10 of 221 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTTAAAGAGGATAGTTG+AGG	+	chr1_1:37682989-37683008	None:intergenic	30.0%
TTAATAGTCCTAACTGTGAA+GGG	+	chr1_1:37683348-37683367	None:intergenic	30.0%
ATCAAGTTTCCAAATGAAGA+GGG	+	chr1_1:37683421-37683440	None:intergenic	30.0%
TGCAACTTACCTAATTGAAA+AGG	+	chr1_1:37683565-37683584	None:intergenic	30.0%
CTTTCAAGGAATAAGTTAAC+AGG	-	chr1_1:37683964-37683983	Msa0021280:CDS	30.0%
CTTCTTGGAAATTCATTATC+AGG	-	chr1_1:37684036-37684055	Msa0021280:CDS	30.0%
TCAAATCCAAACTGATTGTT+AGG	+	chr1_1:37684527-37684546	None:intergenic	30.0%
TTGAGCTCAAATTCATTCAT+TGG	-	chr1_1:37684543-37684562	Msa0021280:CDS	30.0%
TACAATCACTTGATCTTTCA+AGG	-	chr1_1:37684601-37684620	Msa0021280:CDS	30.0%
TAGTAACTCGTAGTAATCAT+CGG	-	chr1_1:37684907-37684926	Msa0021280:CDS	30.0%

Showing 1 to 10 of 258 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	37682731	37686245	37682731	ID=Msa0021280;Name=Msa0021280
chr1_1	mRNA	37682731	37686245	37682731	ID=Msa0021280-mRNA-1;Parent=Msa0021280;Name=Msa0021280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|1075
chr1_1	exon	37683410	37686245	37683410	ID=Msa0021280-mRNA-1:exon:11790;Parent=Msa0021280-mRNA-1
chr1_1	exon	37682731	37683122	37682731	ID=Msa0021280-mRNA-1:exon:11789;Parent=Msa0021280-mRNA-1
chr1_1	CDS	37683410	37686245	37683410	ID=Msa0021280-mRNA-1:cds;Parent=Msa0021280-mRNA-1
chr1_1	CDS	37682731	37683122	37682731	ID=Msa0021280-mRNA-1:cds;Parent=Msa0021280-mRNA-1

Gene Sequence

>Msa0021280

ATGGAAAATATTAGTGTTACCTCTTTGTTCTTTTGCTTACTCTTTTTTAGCATAACAAAAATACAAGTAATAACTTCTCTTTCACCTGATGGACAAGCACTTCTTTCTCTTGCAACATCATCACCTTCTCTTCTCTCTTCATGGAACCCTTCAACATCAACACCATGTTCATGGAAAGGCATAACTTGTTCACCACAATCTAGAGTAATTTCCCTTTCTATCCCTGATACTTTCCTCAACCTCACTTCTTTACCACCTCAACTATCCTCTTTAACAATGCTTCAGCTTCTCAACCTCTCTTCCACAAATCTCTCTGGTTCTATCCCACCTTCTTTTGGTCAACTCTCCCATCTTCAACTCCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATTCCTAATGAACTTGGGAGCCTCTCTTCTCTTCAATTCCTTTTCTTAAACTCAAACAGATTAACAGGAACCATTCCACAACAGCTTTCAAATCTCACTTCACTTGAAGTTCTATGTCTTCAAGACAATCTTCTCAATGGCTCAATCCCTTCACAACTAGGCTCTTTGATATCTCTGCAACAGTTTAGGATAGGTGGTAATCCTTTTCTCACTGGAGAACTCCCTTCACAGTTAGGACTATTAACCAACCTCACCACATTTGGTGCAGCTGCAACTTCACTTTCAGGTTCCATTCCCTCTTCATTTGGAAACTTGATCAATCTACAAACTCTAGCACTTTATGATACAGAAATATCTGGTTCAATACCACCTGAACTTGGTTTGTGTTCTGAGTTGAGGAATCTTTATTTACACATGAACAATCTCACTGGCTCTATTCCTTTTCAATTAGGTAAGTTGCAAAAACTTACTAGTTTGCTTCTTTGGGGAAACACATTATCTGGTAAAATCCCTTCTGAAATTTCAAACTGTTCATCATTAGTTATATTTGATGTATCATCTAATGATCTCACTGGTGAAATACCTGGTGATTTTGGGAAGCTAGTTGTTCTTGAACAGCTTCATTTTTCCGATAATTCCCTCTCTGGTGAGATACCGTGGCAGTTGAGTAACTGCACAAGCCTTGCAACCGTTCAGCTTGACAAGAATCAGTTATCAGGTACAATTCCTTATCAGCTTGGAAAGTTGAAGGTTCTGCAGAGTTTTTTCTTGTGGGGGAATTTGGTTTCTGGAACTATACCGTCCTCTTTTGGAAACTGTTCAGAACTGTATGCACTTGATCTTTCAAGGAATAAGTTAACAGGTTCTATACCAGATGAGATTTTCAGTTTGCAGAAGCTGAGTAAGCTTCTGCTTCTTGGAAATTCATTATCAGGAAGATTACCAGCAAGTGTTGCAAAATGTCAGTCTTTGGTTAGATTGAGAGTTGGAGAGAATCAGCTTTCAGGAGAGATTCCTAAAGAGATAGGACAGTTGCAGAATCTTGTGTTTCTTGATCTGTACATGAATCATTTCTCCGGAAGATTACCGGTTGAGATTGCAAACATCACGGTTCTTGAGCTATTAGATGCTCATAACAACTACCTCGGCGGAGAAATTCCGTCCCTGATTGGTGAGCTTGAAAATTTGGAGCAGCTTGATCTTAGTAGAAACAGTTTGACAGGTGAAATTCCTTGGAGCTTTGGGAACTTGAGCTATTTGAACAAGCTTATTCTCAACAATAATTTATTAACAGGTTCAATACCAAAATCTGTTAGAAATTTACAGAAGCTAACTCTTTTGGATTTGAGTTATAATAGCTTATCTGGTAGCATACCTCCAGAGATTGGTCATGTTACAAGCCTAACAATCAGTTTGGATTTGAGCTCAAATTCATTCATTGGTGAAATACCTGACTCAATGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCAAGGAACATGCTTTTTGGAGGAATTAAGGTTCTTGGTTCTCTTACTAGCCTCACTTCACTCAATATCTCCTACAACAACTTCTCAGGTCCTATTCCAGTAACTCCATTCTTCAAAACTCTAACTTCCAGTTCATATCTTCAGAATCGGAATCTGTGTCAGTCCGTTGACGGTACCACATGCTCTTCAGGTCTGATTCAAAAGAATGGTTTAAAATCTGCGAAAACTATAGCTATGATCACAATTATTCTAGCTTCGGTTACCATAATTGTCATTGCATCGTGGATTCTAGTAACTCGTAGTAATCATCGGTACAATGTTGAAAAGGCTCAGAGGATATCAGGTTCCGCGTCTGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATACCATTTCAGAAACTGAATTTCAGCATAGAAAATATATTGGATTGCTTGAAAGATGAAAATGTGATTGGAAAAGGTTGTTCTGGTGTTGTGTATAAGGCTGAGATGCCGCGCGGAGAGGTAATAGCAGTAAAGAAGCTTTGGAAAACAAGCAAAGGAGATGAAATGGTCGACTCTTTTGCTGCTGAGATTCAGATTCTTGGCTACATTCGGCATAGGAACATTGTGAGGCTCATAGGTTATTGTTCTAACGGGAGTGTTAAGCTTCTTCTCTATAACTTTATCCAAAATGGTAATCTAAGACAACTGTTGGAAGGGAATAGGAACTTAGACTGGGAAACTAGATACAAGATCGCTGTTGGTTCGGCTCAAGGTTTAGCTTATCTTCATCATGATTGTGTCCCATCAATTCTTCACAGAGATGTTAAGTGCAATAACATACTTCTTGATTCCAAATTTGAGGCATATATTGCAGATTTTGGCCTCGCAAAGCTAATGAATTCACCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGGCTACATTGCCCCAGAGTATGGCTACACCATGAACATAACCGAGAAGAGCGACGTGTACAGTTATGGAGTGGTTTTACTAGAGATACTAAGTGGAAGAAGTGCAGTTCAAGATGGACAACACGTTGGAGATGGACAACACATAGTTGAATGGGTGAAGAAGAAGATGGCAAGCTTTGAACCAGCTGTGTCAATACTAGATACAAAGCTTCAAAGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATCGCTATGTTTTGTGTAAATTCTTCGCCAGTTGAACGTCCAACTATGAAGGAAGTTGTTGCATTACTGATGGAAGTGAAGAGTCAGCCTCATGAGGAGATGGGGAAAACCTCTCAACCTTTAATCAAGCAGTCATCAACTCAATGCTGA

Protein sequence

>Msa0021280

MENISVTSLFFCLLFFSITKIQVITSLSPDGQALLSLATSSPSLLSSWNPSTSTPCSWKGITCSPQSRVISLSIPDTFLNLTSLPPQLSSLTMLQLLNLSSTNLSGSIPPSFGQLSHLQLLDLSSNSLTGSIPNELGSLSSLQFLFLNSNRLTGTIPQQLSNLTSLEVLCLQDNLLNGSIPSQLGSLISLQQFRIGGNPFLTGELPSQLGLLTNLTTFGAAATSLSGSIPSSFGNLINLQTLALYDTEISGSIPPELGLCSELRNLYLHMNNLTGSIPFQLGKLQKLTSLLLWGNTLSGKIPSEISNCSSLVIFDVSSNDLTGEIPGDFGKLVVLEQLHFSDNSLSGEIPWQLSNCTSLATVQLDKNQLSGTIPYQLGKLKVLQSFFLWGNLVSGTIPSSFGNCSELYALDLSRNKLTGSIPDEIFSLQKLSKLLLLGNSLSGRLPASVAKCQSLVRLRVGENQLSGEIPKEIGQLQNLVFLDLYMNHFSGRLPVEIANITVLELLDAHNNYLGGEIPSLIGELENLEQLDLSRNSLTGEIPWSFGNLSYLNKLILNNNLLTGSIPKSVRNLQKLTLLDLSYNSLSGSIPPEIGHVTSLTISLDLSSNSFIGEIPDSMSALTQLQSLDLSRNMLFGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFKTLTSSSYLQNRNLCQSVDGTTCSSGLIQKNGLKSAKTIAMITIILASVTIIVIASWILVTRSNHRYNVEKAQRISGSASGAEDFSYPWTFIPFQKLNFSIENILDCLKDENVIGKGCSGVVYKAEMPRGEVIAVKKLWKTSKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNFIQNGNLRQLLEGNRNLDWETRYKIAVGSAQGLAYLHHDCVPSILHRDVKCNNILLDSKFEAYIADFGLAKLMNSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVQDGQHVGDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQMVQEMLQTLGIAMFCVNSSPVERPTMKEVVALLMEVKSQPHEEMGKTSQPLIKQSSTQC*