AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626980 MtrunA17_Chr4g0003411 98.762 808 10 0 1 808 1 808 0.0 1665
Msa0626980 MtrunA17_Chr2g0333021 85.167 809 119 1 1 808 1 809 0.0 1452
Msa0626980 MtrunA17_Chr3g0137821 64.140 831 266 11 1 808 1 822 0.0 1082
Msa0626980 MtrunA17_Chr3g0137791 63.341 832 266 10 6 808 5 826 0.0 1070
Msa0626980 MtrunA17_Chr7g0246481 46.303 825 389 17 6 796 299 1103 0.0 726
Msa0626980 MtrunA17_Chr8g0350951 47.296 795 381 15 26 796 258 1038 0.0 721
Msa0626980 MtrunA17_Chr5g0398161 47.594 769 366 14 50 796 90 843 0.0 719
Msa0626980 MtrunA17_Chr5g0398171 45.421 819 400 17 6 796 38 837 0.0 711
Msa0626980 MtrunA17_Chr5g0406161 45.963 805 371 14 50 808 86 872 0.0 706
Msa0626980 MtrunA17_Chr8g0380631 47.177 797 364 17 50 808 72 849 0.0 699
Msa0626980 MtrunA17_Chr3g0143471 45.936 812 368 20 50 808 73 866 0.0 682
Msa0626980 MtrunA17_Chr2g0330431 42.222 810 403 19 6 808 5 756 0.0 613
Msa0626980 MtrunA17_Chr8g0341931 41.430 811 402 20 6 808 8 753 0.0 590
Msa0626980 MtrunA17_Chr5g0406151 54.930 71 29 1 320 390 12 79 2.24e-22 92.0
Msa0626980 MtrunA17_Chr1g0192401 32.636 239 124 10 497 725 733 944 4.70e-21 99.4
Msa0626980 MtrunA17_Chr1g0192401 29.825 228 118 10 211 426 362 559 7.85e-16 82.4
Msa0626980 MtrunA17_Chr2g0295411 30.924 249 132 9 456 692 736 956 2.37e-18 90.5
Msa0626980 MtrunA17_Chr2g0295411 27.039 233 119 8 211 426 388 586 7.77e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626980 AT3G15730.1 81.728 810 146 2 1 808 1 810 0.0 1420
Msa0626980 AT1G52570.1 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0626980 AT1G52570.3 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0626980 AT1G52570.2 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0626980 AT5G25370.1 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0626980 AT5G25370.3 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0626980 AT5G25370.2 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0626980 AT5G25370.4 64.334 743 257 6 72 808 5 745 0.0 1000
Msa0626980 AT2G42010.1 45.510 824 394 17 6 796 271 1072 0.0 729
Msa0626980 AT2G42010.2 44.444 846 396 17 6 796 271 1097 0.0 723
Msa0626980 AT4G00240.3 46.545 767 377 13 50 796 11 764 0.0 715
Msa0626980 AT4G11840.1 45.157 826 404 15 6 796 44 855 0.0 714
Msa0626980 AT4G00240.1 45.512 791 393 14 26 796 144 916 0.0 714
Msa0626980 AT4G00240.2 46.545 767 377 13 50 796 128 881 0.0 714
Msa0626980 AT4G11830.2 44.928 828 403 15 6 796 34 845 0.0 714
Msa0626980 AT4G11830.1 46.323 775 372 13 50 796 55 813 0.0 712
Msa0626980 AT4G11850.1 45.200 823 404 16 6 796 40 847 0.0 703
Msa0626980 AT4G11840.2 44.606 825 380 15 6 796 44 825 0.0 693
Msa0626980 AT4G35790.2 46.491 798 368 17 50 808 80 857 0.0 677
Msa0626980 AT4G35790.1 46.106 809 366 18 50 808 80 868 0.0 670
Msa0626980 AT1G55180.2 40.678 767 402 17 50 808 19 740 0.0 586
Msa0626980 AT1G55180.1 39.286 812 427 18 5 808 9 762 0.0 585
Msa0626980 AT4G35790.3 46.242 612 282 12 50 626 80 679 1.09e-173 517
Msa0626980 AT4G11830.4 43.669 616 307 11 6 596 34 634 2.99e-169 503
Msa0626980 AT4G11830.3 43.907 599 296 11 6 579 34 617 9.30e-165 492
Msa0626980 AT3G05630.1 30.932 236 126 8 499 724 714 922 3.56e-20 96.7
Msa0626980 AT3G05630.1 27.329 322 155 14 131 426 304 572 3.07e-15 80.9
Msa0626980 AT3G16785.6 32.283 254 122 11 456 692 710 930 3.48e-19 93.6
Msa0626980 AT3G16785.6 30.942 223 104 9 220 426 389 577 1.26e-15 82.0
Msa0626980 AT3G16785.5 32.283 254 122 11 456 692 710 930 3.48e-19 93.6
Msa0626980 AT3G16785.5 30.942 223 104 9 220 426 389 577 1.26e-15 82.0
Msa0626980 AT3G16785.4 32.283 254 122 11 456 692 710 930 3.84e-19 93.6
Msa0626980 AT3G16785.4 30.942 223 104 9 220 426 389 577 1.24e-15 82.0
Msa0626980 AT3G16785.1 32.283 254 122 11 456 692 710 930 3.86e-19 93.6
Msa0626980 AT3G16785.1 30.942 223 104 9 220 426 389 577 1.30e-15 82.0
Msa0626980 AT3G16785.3 32.283 254 122 11 456 692 710 930 3.87e-19 93.6
Msa0626980 AT3G16785.3 30.942 223 104 9 220 426 389 577 1.18e-15 82.0
Msa0626980 AT3G16785.2 32.283 254 122 11 456 692 710 930 3.87e-19 93.6
Msa0626980 AT3G16785.2 30.942 223 104 9 220 426 389 577 1.18e-15 82.0

Find 242 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGGTGGGTGGAAATTT+TGG 0.132980 4_3:+7068037 Msa0626980:CDS
GCTTGAACCGATGCACTTTC+TGG 0.151448 4_3:-7069403 None:intergenic
ATTGATGGTGGGGCTGCTTT+TGG 0.174765 4_3:+7069076 Msa0626980:CDS
AGGAAGATGAAGAGAATAAA+AGG 0.186748 4_3:-7066250 None:intergenic
GCAGCATCTTCAGGAGTTTC+TGG 0.186898 4_3:-7069103 None:intergenic
ATCGGTTGGTTTGTTGAAAA+AGG 0.188851 4_3:+7068502 Msa0626980:CDS
CGTTCTTCTGCCTCGGTAAT+CGG 0.218124 4_3:+7069527 Msa0626980:CDS
TCCATCCCCGGTAACATTTC+CGG 0.219913 4_3:+7069015 Msa0626980:CDS
ATCCCTAAAATACCACTTTC+TGG 0.238358 4_3:+7068254 Msa0626980:CDS
TCGCTCCGTCCATTGATCTT+TGG 0.259842 4_3:-7069824 None:intergenic
TTTCCTTGGTGAGGGATTCT+AGG 0.266899 4_3:+7068381 Msa0626980:CDS
ACCAGATTGCTGACAAATAT+TGG 0.280067 4_3:+7070015 Msa0626980:CDS
CCTATCCTCACTACTTAGTT+TGG 0.297118 4_3:+7070200 Msa0626980:exon
CCAGCTCTCGCAGCATCTTC+AGG 0.308289 4_3:-7069112 None:intergenic
AAAAGTCTAGTGAAGGTGTT+AGG 0.315711 4_3:+7068450 Msa0626980:CDS
ACTCTATGCTACCATTGATT+TGG 0.326580 4_3:+7067818 Msa0626980:CDS
ACCGCCATCATCAGGATTGC+GGG 0.327108 4_3:-7068600 None:intergenic
CCTGTTGGAGCAACTTTAAT+CGG 0.329996 4_3:+7067969 Msa0626980:CDS
TCACTTGAGCACGACCTTCC+TGG 0.343592 4_3:+7070056 Msa0626980:CDS
TTGTCACACTGCACTCTTCT+CGG 0.347204 4_3:+7066204 Msa0626980:five_prime_UTR
GTGAAAAGACTCGTACCATT+TGG 0.347746 4_3:-7067892 None:intergenic
ATCTTAAGTGAAAGTTCCTT+TGG 0.350014 4_3:-7069310 None:intergenic
CCCAATATTTGTCAGCAATC+TGG 0.350230 4_3:-7070016 None:intergenic
ATCCCTCACCAAGGAAATTT+CGG 0.354270 4_3:-7068375 None:intergenic
TTTCATCAACCTAACTTTCC+AGG 0.354896 4_3:+7068824 Msa0626980:CDS
GACACCAAGGCTCGGATTCT+CGG 0.360309 4_3:+7070155 Msa0626980:CDS
TGCATCGGTTCAAGCAATAT+TGG 0.369787 4_3:+7069411 Msa0626980:CDS
CTCTGTGAGAAGAAAGTATA+CGG 0.369951 4_3:-7068179 None:intergenic
AACAATGGAGATGATGTATA+AGG 0.370041 4_3:+7069447 Msa0626980:CDS
TCACATTTACTGTGCTCATA+TGG 0.370819 4_3:+7067911 Msa0626980:CDS
GGCACACCCTCTGGCCACAT+TGG 0.375949 4_3:-7069382 None:intergenic
TGAAAAGACTCGTACCATTT+GGG 0.379443 4_3:-7067891 None:intergenic
ATGCTTATATTAATGCTATT+CGG 0.380918 4_3:+7069179 Msa0626980:CDS
CCGATTAAAGTTGCTCCAAC+AGG 0.380987 4_3:-7067969 None:intergenic
TCGTAATCTGAATCAGGTTC+TGG 0.383287 4_3:-7069589 None:intergenic
TTCTAGGAGGCCAAAGGCTG+GGG 0.387473 4_3:+7068397 Msa0626980:CDS
GCCTTGAAGGACCGATCGCT+TGG 0.387667 4_3:+7068900 Msa0626980:CDS
CTGGCTGTCTTGCAGCTAAA+TGG 0.393197 4_3:-7069884 None:intergenic
ATTGAGGAAACTGTTGGTCT+TGG 0.395386 4_3:+7067780 Msa0626980:CDS
TGTCCACAACCACAATCTTC+TGG 0.398916 4_3:-7068667 None:intergenic
ATGTCACGAAAGACCGCAGC+TGG 0.399882 4_3:+7068120 Msa0626980:CDS
AGAATCCGAGCCTTGGTGTC+GGG 0.406985 4_3:-7070152 None:intergenic
GTTCTTCTGCCTCGGTAATC+GGG 0.408625 4_3:+7069528 Msa0626980:CDS
CAGCATCTTCAGGAGTTTCT+GGG 0.410189 4_3:-7069102 None:intergenic
TGCAAAGCACCAATGTCTTC+AGG 0.412451 4_3:-7069280 None:intergenic
ATTGCAGCACCTGGAAAGTT+AGG 0.413190 4_3:-7068833 None:intergenic
AAACTTACCTATCATCATCT+TGG 0.413744 4_3:-7069653 None:intergenic
TGATGGCGGTAGCATCATTC+AGG 0.414188 4_3:+7068613 Msa0626980:CDS
CCTGAAGATGCTGCGAGAGC+TGG 0.415758 4_3:+7069112 Msa0626980:CDS
ATTCAAAGCGCTAAATTTCC+TGG 0.415896 4_3:+7068152 Msa0626980:CDS
GATGTATAAGGATATCGTTC+TGG 0.416806 4_3:+7069459 Msa0626980:CDS
GCACACCCTCTGGCCACATT+GGG 0.418035 4_3:-7069381 None:intergenic
ATGGCACAAATTCATCTTCA+TGG 0.419518 4_3:+7066670 Msa0626980:CDS
CCAGATTGCTGACAAATATT+GGG 0.419715 4_3:+7070016 Msa0626980:CDS
GCACTTTCTGGCACACCCTC+TGG 0.420063 4_3:-7069391 None:intergenic
TGATCATCCGGAAATGTTAC+CGG 0.420713 4_3:-7069022 None:intergenic
CAGCAATCTGGTTCACCTTA+CGG 0.421232 4_3:-7070004 None:intergenic
TTCACATTCTCTTCAAAACT+TGG 0.423563 4_3:+7066274 Msa0626980:five_prime_UTR
TTCCATGTCTCGTGATCATC+CGG 0.424135 4_3:-7069034 None:intergenic
ATTGAAAATCAGTATTTCCT+TGG 0.426891 4_3:+7069223 Msa0626980:CDS
TTAACTGCTATGACTTTAGC+TGG 0.427079 4_3:+7070390 Msa0626980:three_prime_UTR
CATGAAACGTCGGGACTGTT+GGG 0.428061 4_3:-7069617 None:intergenic
CAGCTGTTTAGATCTATTGA+TGG 0.430877 4_3:+7069061 Msa0626980:CDS
GTTCATACCAAGATGATGAT+AGG 0.435880 4_3:+7069646 Msa0626980:CDS
TCTTCGAACCCTCTTGTATC+GGG 0.436117 4_3:-7068073 None:intergenic
CGCTTATCCGACCTTCCACC+AGG 0.436478 4_3:-7068698 None:intergenic
GGAAGATGAAGAGAATAAAA+GGG 0.437664 4_3:-7066249 None:intergenic
TCCGGAAATGTTACCGGGGA+TGG 0.438701 4_3:-7069016 None:intergenic
AGCTAAATGGTAGGGCTGAT+AGG 0.439308 4_3:-7069871 None:intergenic
TCTTAAGTGAAAGTTCCTTT+GGG 0.441263 4_3:-7069309 None:intergenic
TGTTTAGATCTATTGATGGT+GGG 0.446034 4_3:+7069065 Msa0626980:CDS
TCATGAAACGTCGGGACTGT+TGG 0.446105 4_3:-7069618 None:intergenic
CTGTCTTGCAGCTAAATGGT+AGG 0.447434 4_3:-7069880 None:intergenic
GACATTCATTCCCGCCTTGA+AGG 0.449178 4_3:+7068887 Msa0626980:CDS
TTCAAAGTTCAAACCACAAA+TGG 0.450978 4_3:-7070288 None:intergenic
GTGACAAAACAATGGATCAT+AGG 0.451368 4_3:-7066188 None:intergenic
ATCTTCGAACCCTCTTGTAT+CGG 0.455754 4_3:-7068074 None:intergenic
AAACACATGATATACATTAC+CGG 0.460467 4_3:+7068338 Msa0626980:CDS
TGGTAATGAAAACAAAGATT+AGG 0.461452 4_3:-7070268 None:intergenic
AAAGTCTAGTGAAGGTGTTA+GGG 0.463222 4_3:+7068451 Msa0626980:CDS
GAAACCGCACAGTTCTTTGA+AGG 0.467829 4_3:+7068551 Msa0626980:CDS
GATTCTAGGAGGCCAAAGGC+TGG 0.467985 4_3:+7068395 Msa0626980:CDS
GCCGCCGAGAATCCGAGCCT+TGG 0.470752 4_3:-7070159 None:intergenic
TGTTTATACCGAAATTTCCT+TGG 0.471207 4_3:+7068367 Msa0626980:CDS
TATCCGGCACATGAGAATCT+TGG 0.471426 4_3:-7068226 None:intergenic
ATGATGCTACCGCCATCATC+AGG 0.471464 4_3:-7068608 None:intergenic
GCGAGAGCTGGGCTTATTAG+TGG 0.471776 4_3:+7069124 Msa0626980:CDS
CACTTGCTTCGCTATCCGAT+TGG 0.472419 4_3:+7070080 Msa0626980:CDS
TCACCAGAAGATTGTGGTTG+TGG 0.472585 4_3:+7068664 Msa0626980:CDS
GCTCTCTCGTAATCTGAATC+AGG 0.473696 4_3:-7069595 None:intergenic
AAGCTTAATGCTGGTGGTGG+TGG 0.475675 4_3:+7066724 Msa0626980:CDS
TTCGGTATAAACAGACCAAC+CGG 0.477585 4_3:-7068357 None:intergenic
AACTAAGTAGTGAGGATAGG+AGG 0.480878 4_3:-7070197 None:intergenic
ATTCTAGGAGGCCAAAGGCT+GGG 0.483116 4_3:+7068396 Msa0626980:CDS
CTGAAGATGCTGCGAGAGCT+GGG 0.483144 4_3:+7069113 Msa0626980:CDS
TTATGAGCCTCATCGGTGTT+GGG 0.483969 4_3:+7068286 Msa0626980:CDS
CCTTGAAGGACCGATCGCTT+GGG 0.484290 4_3:+7068901 Msa0626980:CDS
CTCACAGAGGAAAGGATGTA+AGG 0.488198 4_3:+7068193 Msa0626980:CDS
CTTATGAGCCTCATCGGTGT+TGG 0.488671 4_3:+7068285 Msa0626980:CDS
CCCAAGCGATCGGTCCTTCA+AGG 0.490151 4_3:-7068901 None:intergenic
TTACCAAGATTCTCATGTGC+CGG 0.490601 4_3:+7068223 Msa0626980:CDS
TCAGGTTCTGGTTGTTCAGA+AGG 0.491713 4_3:-7069577 None:intergenic
GGAGATGTCACACAGCTGCC+TGG 0.492596 4_3:+7070116 Msa0626980:CDS
CCAGGTGCTGCAATCACAAA+AGG 0.496013 4_3:+7068842 Msa0626980:CDS
CCATTCAAGACCTCCTCGAC+AGG 0.496478 4_3:-7068005 None:intergenic
CATTGATCTTTGGTTGATGT+TGG 0.498653 4_3:-7069814 None:intergenic
TACCGAAATTTCCTTGGTGA+GGG 0.498969 4_3:+7068373 Msa0626980:CDS
TTCTATTATTCCTCCATCCC+CGG 0.504693 4_3:+7069003 Msa0626980:CDS
CTGTTTAGATCTATTGATGG+TGG 0.506397 4_3:+7069064 Msa0626980:CDS
ATTATGAGTAAGATTGAAGC+CGG 0.506694 4_3:+7069331 Msa0626980:CDS
CAATCACAAAAGGCGGTCCA+AGG 0.512335 4_3:+7068852 Msa0626980:CDS
AGGATATCGTTCTGGCACTC+AGG 0.513143 4_3:+7069467 Msa0626980:CDS
CGTTCTGGCACTCAGGGCAA+AGG 0.513948 4_3:+7069474 Msa0626980:CDS
CCTTCACTAGCAACTCCAAT+CGG 0.513962 4_3:-7070095 None:intergenic
GAAACTGTTGGTCTTGGAAA+GGG 0.514436 4_3:+7067786 Msa0626980:CDS
GATCATCCGGAAATGTTACC+GGG 0.516686 4_3:-7069021 None:intergenic
TGGTGAGGAAATTGATAGGT+GGG 0.528326 4_3:+7068025 Msa0626980:CDS
AAGCAATATTGGACTGGCAG+AGG 0.531832 4_3:+7069422 Msa0626980:CDS
AACATAGATCATGAAACGTC+GGG 0.533395 4_3:-7069626 None:intergenic
ATGTCATGCCAAGGTTCCCT+TGG 0.535392 4_3:-7068869 None:intergenic
AGCGATCGGTCCTTCAAGGC+GGG 0.535565 4_3:-7068897 None:intergenic
GAGAATCCGAGCCTTGGTGT+CGG 0.538506 4_3:-7070153 None:intergenic
TCCAAGCAAAAGAGCTTCCA+AGG 0.539099 4_3:-7069240 None:intergenic
TAAGTCTTGCCACCAGAAAG+TGG 0.539707 4_3:-7068266 None:intergenic
CCATGGACTTGACCACGTGC+TGG 0.539957 4_3:-7069903 None:intergenic
TATTTGACGTTCTTCTGCCT+CGG 0.540130 4_3:+7069520 Msa0626980:CDS
AAGAAAGTATACGGAACTCC+AGG 0.540377 4_3:-7068170 None:intergenic
GTTTAGATCTATTGATGGTG+GGG 0.540703 4_3:+7069066 Msa0626980:CDS
CAAAATATTGCAGCTTCACA+TGG 0.543780 4_3:-7068097 None:intergenic
TCTTGCCTTCTCCAAATCAA+TGG 0.546831 4_3:-7067829 None:intergenic
TGATTTGGAGAAGGCAAGAG+TGG 0.552030 4_3:+7067833 Msa0626980:CDS
AAGGCGGTCCAAGGGAACCT+TGG 0.552221 4_3:+7068861 Msa0626980:CDS
GTGAAAGATGATAATCCTGT+TGG 0.552822 4_3:+7067954 Msa0626980:CDS
CCAGCACGTGGTCAAGTCCA+TGG 0.552842 4_3:+7069903 Msa0626980:CDS
ATGAGCATACTAATCCCAAA+TGG 0.553693 4_3:+7067877 Msa0626980:CDS
GTTCTGGCACTCAGGGCAAA+GGG 0.553846 4_3:+7069475 Msa0626980:CDS
TGCTACCATTGATTTGGAGA+AGG 0.554396 4_3:+7067824 Msa0626980:CDS
CAAAACATTGAGGAAACTGT+TGG 0.557099 4_3:+7067774 Msa0626980:CDS
GGAAACTGTTGGTCTTGGAA+AGG 0.558000 4_3:+7067785 Msa0626980:CDS
CCAAACTAAGTAGTGAGGAT+AGG 0.559043 4_3:-7070200 None:intergenic
CAACATCAACCAAAGATCAA+TGG 0.560182 4_3:+7069815 Msa0626980:CDS
TGAATGGTGAGGAAATTGAT+AGG 0.560352 4_3:+7068021 Msa0626980:CDS
TTCCGGATGATCACGAGACA+TGG 0.561317 4_3:+7069032 Msa0626980:CDS
GATATTAAGCCTGAAGACAT+TGG 0.562253 4_3:+7069271 Msa0626980:CDS
GGATATCGTTCTGGCACTCA+GGG 0.562290 4_3:+7069468 Msa0626980:CDS
TCTTCATGCTACTATCTATG+AGG 0.563357 4_3:+7066696 Msa0626980:CDS
GATGACGAATACATAATCGT+TGG 0.564804 4_3:+7069786 Msa0626980:CDS
ATACCGAAATTTCCTTGGTG+AGG 0.565309 4_3:+7068372 Msa0626980:CDS
AACGATGGAGGAAGCAAGGT+GGG 0.565356 4_3:+7068945 Msa0626980:CDS
AAAGACCGCAGCTGGGCTCG+AGG 0.565566 4_3:+7068128 Msa0626980:CDS
CGGTTCAAGCAATATTGGAC+TGG 0.566255 4_3:+7069416 Msa0626980:CDS
TTATGAGTAAGATTGAAGCC+GGG 0.567721 4_3:+7069332 Msa0626980:CDS
AAGTAGTGAGGATAGGAGGG+AGG 0.571376 4_3:-7070193 None:intergenic
TGGGATGATAGAACATCGGT+TGG 0.573109 4_3:+7068488 Msa0626980:CDS
TGTCTTGCAGCTAAATGGTA+GGG 0.573776 4_3:-7069879 None:intergenic
CCGCCATCATCAGGATTGCG+GGG 0.573969 4_3:-7068599 None:intergenic
ACTTTCTTCTCACAGAGGAA+AGG 0.574250 4_3:+7068185 Msa0626980:CDS
TACTCATCACCAGAAGATTG+TGG 0.574698 4_3:+7068658 Msa0626980:CDS
GATAAGCTTAATGCTGGTGG+TGG 0.575966 4_3:+7066721 Msa0626980:CDS
GAATGCCTCGAGCCCAGCTG+CGG 0.576491 4_3:-7068133 None:intergenic
TACCGCCATCATCAGGATTG+CGG 0.579693 4_3:-7068601 None:intergenic
GGATTTACTTGTCTCTCTGA+GGG 0.579805 4_3:+7068970 Msa0626980:CDS
ACTAAGTAGTGAGGATAGGA+GGG 0.580152 4_3:-7070196 None:intergenic
GGATAGCGAAGCAAGTGTCC+AGG 0.581630 4_3:-7070074 None:intergenic
CCTGTCGAGGAGGTCTTGAA+TGG 0.582151 4_3:+7068005 Msa0626980:CDS
AGCTGGGCTTATTAGTGGAA+AGG 0.583055 4_3:+7069129 Msa0626980:CDS
TGCTTTGCATCTCATCCCAA+AGG 0.583132 4_3:+7069294 Msa0626980:CDS
GAATCCGAGCCTTGGTGTCG+GGG 0.583277 4_3:-7070151 None:intergenic
GCAAGACTTATGAGCCTCAT+CGG 0.583714 4_3:+7068279 Msa0626980:CDS
TAGGTTGATGAAAATCATCA+TGG 0.587769 4_3:-7068814 None:intergenic
ACAGATCAGGCAAAACATTG+AGG 0.589416 4_3:+7067764 Msa0626980:intron
AAAGATCAATGGACGGAGCG+AGG 0.593749 4_3:+7069826 Msa0626980:CDS
GAGGGACTCTGAGATAGCGA+TGG 0.594266 4_3:+7069845 Msa0626980:CDS
ATGGAGGAAGCAAGGTGGGA+AGG 0.595810 4_3:+7068949 Msa0626980:CDS
GGAAATGTTACCGGGGATGG+AGG 0.599535 4_3:-7069013 None:intergenic
AGGGACTCTGAGATAGCGAT+GGG 0.600455 4_3:+7069846 Msa0626980:CDS
AGGATTTACTTGTCTCTCTG+AGG 0.601222 4_3:+7068969 Msa0626980:CDS
GAGGTTGATAAGCTTAATGC+TGG 0.603431 4_3:+7066715 Msa0626980:CDS
AAATCAAGAATGTATCCGTA+AGG 0.604233 4_3:+7069989 Msa0626980:CDS
ACATGATATACATTACCGGT+TGG 0.606826 4_3:+7068342 Msa0626980:CDS
CCGATTGGAGTTGCTAGTGA+AGG 0.611060 4_3:+7070095 Msa0626980:CDS
TATGAGTAAGATTGAAGCCG+GGG 0.612358 4_3:+7069333 Msa0626980:CDS
CCTTGGTGAGGGATTCTAGG+AGG 0.613168 4_3:+7068384 Msa0626980:CDS
AAGATCAATGGACGGAGCGA+GGG 0.613208 4_3:+7069827 Msa0626980:CDS
TGTTTAACTTTGAGCAACGA+TGG 0.613445 4_3:+7068930 Msa0626980:CDS
CGGGAATGAATGTCATGCCA+AGG 0.614171 4_3:-7068878 None:intergenic
AACAACACATCCCAAGCGAT+CGG 0.615121 4_3:-7068911 None:intergenic
GATTTGGAGAAGGCAAGAGT+GGG 0.615789 4_3:+7067834 Msa0626980:CDS
AATCACAAAAGGCGGTCCAA+GGG 0.616469 4_3:+7068853 Msa0626980:CDS
TGGTGGAAATTTCCTCAGCA+TGG 0.616523 4_3:+7066741 Msa0626980:CDS
GAGCAACGATGGAGGAAGCA+AGG 0.617826 4_3:+7068941 Msa0626980:CDS
TGAATTACCTGGTGGAAGGT+CGG 0.619368 4_3:+7068691 Msa0626980:CDS
CGCCATCATCAGGATTGCGG+GGG 0.619690 4_3:-7068598 None:intergenic
TGGAGAAGGCAAGAGTGGGA+AGG 0.621315 4_3:+7067838 Msa0626980:CDS
AGGGAATCGAGGAAGATCCT+CGG 0.622355 4_3:+7069494 Msa0626980:CDS
TCTAGGAGGCCAAAGGCTGG+GGG 0.624607 4_3:+7068398 Msa0626980:CDS
AGCATATGTGCCTGTCGAGG+AGG 0.627896 4_3:+7067995 Msa0626980:CDS
GAACATAGATCATGAAACGT+CGG 0.633210 4_3:-7069627 None:intergenic
TGTTGTCCCAATGTGGCCAG+AGG 0.634138 4_3:+7069375 Msa0626980:CDS
GAGGGATTCTAGGAGGCCAA+AGG 0.637811 4_3:+7068391 Msa0626980:CDS
CTTCTGGTGATGAGTAAACA+TGG 0.641961 4_3:-7068651 None:intergenic
CGAGGAGGTCTTGAATGGTG+AGG 0.642464 4_3:+7068010 Msa0626980:CDS
TGAGGAAATTGATAGGTGGG+TGG 0.645001 4_3:+7068028 Msa0626980:CDS
GCATTATGGTATGAGCACCT+TGG 0.646788 4_3:+7069936 Msa0626980:CDS
TGAGCCTCATCGGTGTTGGG+AGG 0.651132 4_3:+7068289 Msa0626980:CDS
AGGAGTCATGAAGCATGCCA+AGG 0.651697 4_3:-7069953 None:intergenic
GTTGTCCCAATGTGGCCAGA+GGG 0.653005 4_3:+7069376 Msa0626980:CDS
AAGAGCATATGTGCCTGTCG+AGG 0.653021 4_3:+7067992 Msa0626980:CDS
AATCGGGAAGTAAAGAAACA+AGG 0.653307 4_3:+7069544 Msa0626980:CDS
TATCATATCTTCCATCACAA+AGG 0.653464 4_3:-7068751 None:intergenic
ATCAACCAAAGATCAATGGA+CGG 0.654662 4_3:+7069819 Msa0626980:CDS
CGTATACTTTCTTCTCACAG+AGG 0.655571 4_3:+7068180 Msa0626980:CDS
AGCGAAGCAAGTGTCCAGGA+AGG 0.657401 4_3:-7070070 None:intergenic
AGTGCAGTGTGACAAAACAA+TGG 0.657589 4_3:-7066196 None:intergenic
GGGTGTGCCAGAAAGTGCAT+CGG 0.660670 4_3:+7069396 Msa0626980:CDS
AATAAAACAGTACCATGCTG+AGG 0.661732 4_3:-7066753 None:intergenic
ACAGTGAATTACCTGGTGGA+AGG 0.662406 4_3:+7068687 Msa0626980:CDS
CAACGATGGAGGAAGCAAGG+TGG 0.668752 4_3:+7068944 Msa0626980:CDS
AAGAACGTCAAATAATTCCG+AGG 0.670151 4_3:-7069511 None:intergenic
AAGCGATCGGTCCTTCAAGG+CGG 0.671322 4_3:-7068898 None:intergenic
GGTGCTGCAATCACAAAAGG+CGG 0.672665 4_3:+7068845 Msa0626980:CDS
ACTCAGGGCAAAGGGAATCG+AGG 0.672681 4_3:+7069483 Msa0626980:CDS
ATGGTGAGGAAATTGATAGG+TGG 0.675988 4_3:+7068024 Msa0626980:CDS
CCCCGCAATCCTGATGATGG+CGG 0.678364 4_3:+7068599 Msa0626980:CDS
TCTTTACTTCCCGATTACCG+AGG 0.680953 4_3:-7069537 None:intergenic
ATATCCTCCCAACACCGATG+AGG 0.682280 4_3:-7068293 None:intergenic
TGTTTGGGATGATAGAACAT+CGG 0.683265 4_3:+7068484 Msa0626980:CDS
TGTACGTTGTTGTCCCAATG+TGG 0.686098 4_3:+7069368 Msa0626980:CDS
GCTGCAAGACAGCCAGCACG+TGG 0.687862 4_3:+7069891 Msa0626980:CDS
TGTCACGAAAGACCGCAGCT+GGG 0.688731 4_3:+7068121 Msa0626980:CDS
GTTGATAAGCTTAATGCTGG+TGG 0.689428 4_3:+7066718 Msa0626980:CDS
ACCAAGGCTCGGATTCTCGG+CGG 0.691037 4_3:+7070158 Msa0626980:CDS
ATAATGCCATGCGAAAACCA+TGG 0.691651 4_3:-7069920 None:intergenic
CCTAAAATACCACTTTCTGG+TGG 0.698637 4_3:+7068257 Msa0626980:CDS
GTTGTGGACAGTGAATTACC+TGG 0.700680 4_3:+7068680 Msa0626980:CDS
ATCATCCGGAAATGTTACCG+GGG 0.705073 4_3:-7069020 None:intergenic
TTAACTTTGAGCAACGATGG+AGG 0.710551 4_3:+7068933 Msa0626980:CDS
CCTCCTAGAATCCCTCACCA+AGG 0.715713 4_3:-7068384 None:intergenic
GGACTGGCAGAGGAGAACAA+TGG 0.727822 4_3:+7069432 Msa0626980:CDS
AGTACCTTCAAAGAACTGTG+CGG 0.748352 4_3:-7068555 None:intergenic
CTGGTGATGAGTAAACATGG+TGG 0.787330 4_3:-7068648 None:intergenic
GTGGACAGTGAATTACCTGG+TGG 0.811877 4_3:+7068683 Msa0626980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTATTTTTTTAAAATT+CGG - chr4_3:7066561-7066580 None:intergenic 0.0%
!!! CAAAAAGTTTTTTTTTTTTA+TGG + chr4_3:7066599-7066618 Msa0626980:intron 10.0%
!!! ACTGTTTTATTTAATTATTT+TGG + chr4_3:7066765-7066784 Msa0626980:intron 10.0%
!!! ATTTTTAGATTTCATGTTTT+TGG + chr4_3:7066814-7066833 Msa0626980:intron 15.0%
!!! AAAAAAAAAGAATATTTTGG+TGG + chr4_3:7066896-7066915 Msa0626980:intron 15.0%
!! TAAGTATAAGCAAATAAATA+GGG - chr4_3:7067743-7067762 None:intergenic 15.0%
!! ATAAGTATAAGCAAATAAAT+AGG - chr4_3:7067744-7067763 None:intergenic 15.0%
!!! TTTTTAAACAGAGGAAAATA+AGG - chr4_3:7066151-7066170 None:intergenic 20.0%
!!! TTTAATTATTTTGGCCTATT+TGG + chr4_3:7066774-7066793 Msa0626980:intron 20.0%
!! TAATATTGACAATTAACCAA+CGG - chr4_3:7067139-7067158 None:intergenic 20.0%
!! ATGCTTATATTAATGCTATT+CGG + chr4_3:7069179-7069198 Msa0626980:CDS 20.0%
!! AAATTACTGTCATAAATTAC+AGG + chr4_3:7069678-7069697 Msa0626980:intron 20.0%
!! AAATCACAAAAATCTGTATT+TGG - chr4_3:7070363-7070382 None:intergenic 20.0%
! AAAGAGTTAAATCAGATCAA+TGG - chr4_3:7066384-7066403 None:intergenic 25.0%
! TTGAATCATTAGATCCAAAT+AGG - chr4_3:7066791-7066810 None:intergenic 25.0%
!!! AAAAAAGAATATTTTGGTGG+TGG + chr4_3:7066899-7066918 Msa0626980:intron 25.0%
!!! AAAAAGAATATTTTGGTGGT+GGG + chr4_3:7066900-7066919 Msa0626980:intron 25.0%
! AATATTGACAATTAACCAAC+GGG - chr4_3:7067138-7067157 None:intergenic 25.0%
!!! ATATCAGTTTTGTCAAATGT+CGG + chr4_3:7067175-7067194 Msa0626980:intron 25.0%
! GATAAAGTTAATGGTTATTC+AGG - chr4_3:7067453-7067472 None:intergenic 25.0%
! GATGCATAAGATAAAGTTAA+TGG - chr4_3:7067462-7067481 None:intergenic 25.0%
!!! TAATTTGCTTGATTTAGCTT+TGG - chr4_3:7067621-7067640 None:intergenic 25.0%
! TGTTTATACATACATTGACA+TGG + chr4_3:7067654-7067673 Msa0626980:intron 25.0%
! AATAGGGTCATTAATAATGA+AGG - chr4_3:7067727-7067746 None:intergenic 25.0%
!!! ATTTTAGGGATGAAATTATC+CGG - chr4_3:7068245-7068264 None:intergenic 25.0%
! AAACACATGATATACATTAC+CGG + chr4_3:7068338-7068357 Msa0626980:CDS 25.0%
! ATTGAAAATCAGTATTTCCT+TGG + chr4_3:7069223-7069242 Msa0626980:CDS 25.0%
!! TGGTAATGAAAACAAAGATT+AGG - chr4_3:7070271-7070290 None:intergenic 25.0%
!!! TTTGTTTTCATTACCATTTG+TGG + chr4_3:7070275-7070294 Msa0626980:three_prime_UTR 25.0%
!!! AAGTCTCTGTTTTTAAACAG+AGG - chr4_3:7066160-7066179 None:intergenic 30.0%
GGAAGATGAAGAGAATAAAA+GGG - chr4_3:7066252-7066271 None:intergenic 30.0%
AGGAAGATGAAGAGAATAAA+AGG - chr4_3:7066253-7066272 None:intergenic 30.0%
TTCACATTCTCTTCAAAACT+TGG + chr4_3:7066274-7066293 Msa0626980:five_prime_UTR 30.0%
AGTTAAATCAGATCAATGGT+TGG - chr4_3:7066380-7066399 None:intergenic 30.0%
!! GTTTTGTTCTGACTTTAAGT+AGG + chr4_3:7066497-7066516 Msa0626980:intron 30.0%
! TGTGATTTGTAGGTGAAAAA+TGG + chr4_3:7066651-7066670 Msa0626980:intron 30.0%
!!! AAAAGAATATTTTGGTGGTG+GGG + chr4_3:7066901-7066920 Msa0626980:intron 30.0%
AAAGCAAAATCCAATGAGTA+AGG - chr4_3:7067537-7067556 None:intergenic 30.0%
! TTGGATTTTGCTTTCGTTAT+TGG + chr4_3:7067543-7067562 Msa0626980:intron 30.0%
TACATTGCACATACATACAT+AGG + chr4_3:7067572-7067591 Msa0626980:intron 30.0%
!! TGATTTAGCTTTGGTTATTC+AGG - chr4_3:7067612-7067631 None:intergenic 30.0%
AAACGCAAAACTAAAGAAAC+TGG - chr4_3:7067694-7067713 None:intergenic 30.0%
TGCTTATACTTATACAGATC+AGG + chr4_3:7067751-7067770 Msa0626980:intron 30.0%
! GTATATCATGTGTTTTGCAT+TGG - chr4_3:7068333-7068352 None:intergenic 30.0%
TGTTTATACCGAAATTTCCT+TGG + chr4_3:7068367-7068386 Msa0626980:CDS 30.0%
CTAAAGAAAAAGTCTAGTGA+AGG + chr4_3:7068443-7068462 Msa0626980:CDS 30.0%
!!! GAAGAATTGTGAGTTTTGTT+GGG + chr4_3:7068720-7068739 Msa0626980:CDS 30.0%
!!! AAGAATTGTGAGTTTTGTTG+GGG + chr4_3:7068721-7068740 Msa0626980:CDS 30.0%
TATCATATCTTCCATCACAA+AGG - chr4_3:7068754-7068773 None:intergenic 30.0%
!! TAGGTTGATGAAAATCATCA+TGG - chr4_3:7068817-7068836 None:intergenic 30.0%
! TGTTTAGATCTATTGATGGT+GGG + chr4_3:7069065-7069084 Msa0626980:CDS 30.0%
TCTTAAGTGAAAGTTCCTTT+GGG - chr4_3:7069312-7069331 None:intergenic 30.0%
ATCTTAAGTGAAAGTTCCTT+TGG - chr4_3:7069313-7069332 None:intergenic 30.0%
ATTATGAGTAAGATTGAAGC+CGG + chr4_3:7069331-7069350 Msa0626980:CDS 30.0%
AACAATGGAGATGATGTATA+AGG + chr4_3:7069447-7069466 Msa0626980:CDS 30.0%
AAACTTACCTATCATCATCT+TGG - chr4_3:7069656-7069675 None:intergenic 30.0%
! ATTCTTGATTTTCTGGATGA+AGG - chr4_3:7069980-7069999 None:intergenic 30.0%
AAATCAAGAATGTATCCGTA+AGG + chr4_3:7069989-7070008 Msa0626980:CDS 30.0%
AAAAACCAAACTAAGTAGTG+AGG - chr4_3:7070208-7070227 None:intergenic 30.0%
TTCAAAGTTCAAACCACAAA+TGG - chr4_3:7070291-7070310 None:intergenic 30.0%
GTGACAAAACAATGGATCAT+AGG - chr4_3:7066191-7066210 None:intergenic 35.0%
!!! GTTTTGAAGAGAATGTGAAG+AGG - chr4_3:7066273-7066292 None:intergenic 35.0%
TTGTGTGATCTGATGAGAAA+TGG + chr4_3:7066623-7066642 Msa0626980:intron 35.0%
TGTGTGATCTGATGAGAAAT+GGG + chr4_3:7066624-7066643 Msa0626980:intron 35.0%
ATGGCACAAATTCATCTTCA+TGG + chr4_3:7066670-7066689 Msa0626980:CDS 35.0%
TCTTCATGCTACTATCTATG+AGG + chr4_3:7066696-7066715 Msa0626980:CDS 35.0%
AATAAAACAGTACCATGCTG+AGG - chr4_3:7066756-7066775 None:intergenic 35.0%
CATCTGTTACAAATTAGGCA+TGG - chr4_3:7067236-7067255 None:intergenic 35.0%
! CATGCCTAATTTGTAACAGA+TGG + chr4_3:7067234-7067253 Msa0626980:intron 35.0%
! CCTAATTTGTAACAGATGGT+GGG + chr4_3:7067238-7067257 Msa0626980:intron 35.0%
! CTAATTTGTAACAGATGGTG+GGG + chr4_3:7067239-7067258 Msa0626980:intron 35.0%
! TTTAAGGTGGCTCAAAATGA+CGG + chr4_3:7067271-7067290 Msa0626980:intron 35.0%
CACAAAGTAGTTTCAATCGA+AGG - chr4_3:7067410-7067429 None:intergenic 35.0%
CAAAACATTGAGGAAACTGT+TGG + chr4_3:7067774-7067793 Msa0626980:CDS 35.0%
! ACTCTATGCTACCATTGATT+TGG + chr4_3:7067818-7067837 Msa0626980:CDS 35.0%
ATGAGCATACTAATCCCAAA+TGG + chr4_3:7067877-7067896 Msa0626980:CDS 35.0%
TGAAAAGACTCGTACCATTT+GGG - chr4_3:7067894-7067913 None:intergenic 35.0%
TCACATTTACTGTGCTCATA+TGG + chr4_3:7067911-7067930 Msa0626980:CDS 35.0%
GTGAAAGATGATAATCCTGT+TGG + chr4_3:7067954-7067973 Msa0626980:CDS 35.0%
TGAATGGTGAGGAAATTGAT+AGG + chr4_3:7068021-7068040 Msa0626980:CDS 35.0%
TGAAAAAAACCCGATACAAG+AGG + chr4_3:7068064-7068083 Msa0626980:CDS 35.0%
GAAAAAAACCCGATACAAGA+GGG + chr4_3:7068065-7068084 Msa0626980:CDS 35.0%
CAAAATATTGCAGCTTCACA+TGG - chr4_3:7068100-7068119 None:intergenic 35.0%
! ATTCAAAGCGCTAAATTTCC+TGG + chr4_3:7068152-7068171 Msa0626980:CDS 35.0%
! CTCTGTGAGAAGAAAGTATA+CGG - chr4_3:7068182-7068201 None:intergenic 35.0%
ATCCCTAAAATACCACTTTC+TGG + chr4_3:7068254-7068273 Msa0626980:CDS 35.0%
! CACCAGAAAGTGGTATTTTA+GGG - chr4_3:7068259-7068278 None:intergenic 35.0%
ACATGATATACATTACCGGT+TGG + chr4_3:7068342-7068361 Msa0626980:CDS 35.0%
!! AAAAGTCTAGTGAAGGTGTT+AGG + chr4_3:7068450-7068469 Msa0626980:CDS 35.0%
!! AAAGTCTAGTGAAGGTGTTA+GGG + chr4_3:7068451-7068470 Msa0626980:CDS 35.0%
!! TTAGGGTTTTGATGCTTGTT+TGG + chr4_3:7068468-7068487 Msa0626980:CDS 35.0%
!! TAGGGTTTTGATGCTTGTTT+GGG + chr4_3:7068469-7068488 Msa0626980:CDS 35.0%
! TGTTTGGGATGATAGAACAT+CGG + chr4_3:7068484-7068503 Msa0626980:CDS 35.0%
!! ATCGGTTGGTTTGTTGAAAA+AGG + chr4_3:7068502-7068521 Msa0626980:CDS 35.0%
!! GTTGGTTTGTTGAAAAAGGA+TGG + chr4_3:7068506-7068525 Msa0626980:CDS 35.0%
!! GTTGAAAAAGGATGGATTGA+TGG + chr4_3:7068514-7068533 Msa0626980:CDS 35.0%
!! CGAAGAATTGTGAGTTTTGT+TGG + chr4_3:7068719-7068738 Msa0626980:CDS 35.0%
!!! AGAATTGTGAGTTTTGTTGG+GGG + chr4_3:7068722-7068741 Msa0626980:CDS 35.0%
!! GTTCTAAAAAGTGAGTGGAA+TGG - chr4_3:7068779-7068798 None:intergenic 35.0%
!! CAAGAGTTCTAAAAAGTGAG+TGG - chr4_3:7068784-7068803 None:intergenic 35.0%
TTTCATCAACCTAACTTTCC+AGG + chr4_3:7068824-7068843 Msa0626980:CDS 35.0%
! TGTTTAACTTTGAGCAACGA+TGG + chr4_3:7068930-7068949 Msa0626980:CDS 35.0%
CAGCTGTTTAGATCTATTGA+TGG + chr4_3:7069061-7069080 Msa0626980:CDS 35.0%
CTGTTTAGATCTATTGATGG+TGG + chr4_3:7069064-7069083 Msa0626980:CDS 35.0%
!! GTTTAGATCTATTGATGGTG+GGG + chr4_3:7069066-7069085 Msa0626980:CDS 35.0%
GATATTAAGCCTGAAGACAT+TGG + chr4_3:7069271-7069290 Msa0626980:CDS 35.0%
TTATGAGTAAGATTGAAGCC+GGG + chr4_3:7069332-7069351 Msa0626980:CDS 35.0%
GATGTATAAGGATATCGTTC+TGG + chr4_3:7069459-7069478 Msa0626980:CDS 35.0%
AAGAACGTCAAATAATTCCG+AGG - chr4_3:7069514-7069533 None:intergenic 35.0%
AATCGGGAAGTAAAGAAACA+AGG + chr4_3:7069544-7069563 Msa0626980:CDS 35.0%
AACATAGATCATGAAACGTC+GGG - chr4_3:7069629-7069648 None:intergenic 35.0%
GAACATAGATCATGAAACGT+CGG - chr4_3:7069630-7069649 None:intergenic 35.0%
GTTCATACCAAGATGATGAT+AGG + chr4_3:7069646-7069665 Msa0626980:CDS 35.0%
GATGACGAATACATAATCGT+TGG + chr4_3:7069786-7069805 Msa0626980:CDS 35.0%
! CATTGATCTTTGGTTGATGT+TGG - chr4_3:7069817-7069836 None:intergenic 35.0%
CAACATCAACCAAAGATCAA+TGG + chr4_3:7069815-7069834 Msa0626980:CDS 35.0%
ATCAACCAAAGATCAATGGA+CGG + chr4_3:7069819-7069838 Msa0626980:CDS 35.0%
! TTGATTTTCTGGATGAAGGA+AGG - chr4_3:7069976-7069995 None:intergenic 35.0%
! CGGATACATTCTTGATTTTC+TGG - chr4_3:7069987-7070006 None:intergenic 35.0%
ACCAGATTGCTGACAAATAT+TGG + chr4_3:7070015-7070034 Msa0626980:CDS 35.0%
CCAGATTGCTGACAAATATT+GGG + chr4_3:7070016-7070035 Msa0626980:CDS 35.0%
TTAACTGCTATGACTTTAGC+TGG + chr4_3:7070390-7070409 Msa0626980:three_prime_UTR 35.0%
AGTGCAGTGTGACAAAACAA+TGG - chr4_3:7066199-7066218 None:intergenic 40.0%
GTGTGATCTGATGAGAAATG+GGG + chr4_3:7066625-7066644 Msa0626980:intron 40.0%
! AATGGGGTTGTGTGATTTGT+AGG + chr4_3:7066641-7066660 Msa0626980:intron 40.0%
!! GAGGTTGATAAGCTTAATGC+TGG + chr4_3:7066715-7066734 Msa0626980:CDS 40.0%
! GTTGATAAGCTTAATGCTGG+TGG + chr4_3:7066718-7066737 Msa0626980:CDS 40.0%
ACAGATCCTAAAAGCAAGCA+GGG - chr4_3:7066949-7066968 None:intergenic 40.0%
TTACAAATTAGGCATGGCAG+TGG - chr4_3:7067230-7067249 None:intergenic 40.0%
! GCCTAATTTGTAACAGATGG+TGG + chr4_3:7067237-7067256 Msa0626980:intron 40.0%
CCCACCATCTGTTACAAATT+AGG - chr4_3:7067241-7067260 None:intergenic 40.0%
! TCAGTGTTATCGATTGCAGA+TGG - chr4_3:7067322-7067341 None:intergenic 40.0%
ACAGATCAGGCAAAACATTG+AGG + chr4_3:7067764-7067783 Msa0626980:intron 40.0%
! ATTGAGGAAACTGTTGGTCT+TGG + chr4_3:7067780-7067799 Msa0626980:CDS 40.0%
!! GAAACTGTTGGTCTTGGAAA+GGG + chr4_3:7067786-7067805 Msa0626980:CDS 40.0%
!! TGCTACCATTGATTTGGAGA+AGG + chr4_3:7067824-7067843 Msa0626980:CDS 40.0%
TCTTGCCTTCTCCAAATCAA+TGG - chr4_3:7067832-7067851 None:intergenic 40.0%
GTGAAAAGACTCGTACCATT+TGG - chr4_3:7067895-7067914 None:intergenic 40.0%
CCTGTTGGAGCAACTTTAAT+CGG + chr4_3:7067969-7067988 Msa0626980:CDS 40.0%
ATGGTGAGGAAATTGATAGG+TGG + chr4_3:7068024-7068043 Msa0626980:CDS 40.0%
TGGTGAGGAAATTGATAGGT+GGG + chr4_3:7068025-7068044 Msa0626980:CDS 40.0%
! TGATAGGTGGGTGGAAATTT+TGG + chr4_3:7068037-7068056 Msa0626980:CDS 40.0%
ATCTTCGAACCCTCTTGTAT+CGG - chr4_3:7068077-7068096 None:intergenic 40.0%
! AAGAAAGTATACGGAACTCC+AGG - chr4_3:7068173-7068192 None:intergenic 40.0%
CGTATACTTTCTTCTCACAG+AGG + chr4_3:7068180-7068199 Msa0626980:CDS 40.0%
ACTTTCTTCTCACAGAGGAA+AGG + chr4_3:7068185-7068204 Msa0626980:CDS 40.0%
TTACCAAGATTCTCATGTGC+CGG + chr4_3:7068223-7068242 Msa0626980:CDS 40.0%
! CCACCAGAAAGTGGTATTTT+AGG - chr4_3:7068260-7068279 None:intergenic 40.0%
CCTAAAATACCACTTTCTGG+TGG + chr4_3:7068257-7068276 Msa0626980:CDS 40.0%
!! CATGTGTTTTGCATTGGTGA+TGG - chr4_3:7068327-7068346 None:intergenic 40.0%
TTCGGTATAAACAGACCAAC+CGG - chr4_3:7068360-7068379 None:intergenic 40.0%
ATACCGAAATTTCCTTGGTG+AGG + chr4_3:7068372-7068391 Msa0626980:CDS 40.0%
TACCGAAATTTCCTTGGTGA+GGG + chr4_3:7068373-7068392 Msa0626980:CDS 40.0%
ATCCCTCACCAAGGAAATTT+CGG - chr4_3:7068378-7068397 None:intergenic 40.0%
AGTACCTTCAAAGAACTGTG+CGG - chr4_3:7068558-7068577 None:intergenic 40.0%
! CTTCTGGTGATGAGTAAACA+TGG - chr4_3:7068654-7068673 None:intergenic 40.0%
TACTCATCACCAGAAGATTG+TGG + chr4_3:7068658-7068677 Msa0626980:CDS 40.0%
TTAACTTTGAGCAACGATGG+AGG + chr4_3:7068933-7068952 Msa0626980:CDS 40.0%
AGGATTTACTTGTCTCTCTG+AGG + chr4_3:7068969-7068988 Msa0626980:CDS 40.0%
GGATTTACTTGTCTCTCTGA+GGG + chr4_3:7068970-7068989 Msa0626980:CDS 40.0%
TTCTATTATTCCTCCATCCC+CGG + chr4_3:7069003-7069022 Msa0626980:CDS 40.0%
TGATCATCCGGAAATGTTAC+CGG - chr4_3:7069025-7069044 None:intergenic 40.0%
TATGAGTAAGATTGAAGCCG+GGG + chr4_3:7069333-7069352 Msa0626980:CDS 40.0%
!! TGCATCGGTTCAAGCAATAT+TGG + chr4_3:7069411-7069430 Msa0626980:CDS 40.0%
TATTTGACGTTCTTCTGCCT+CGG + chr4_3:7069520-7069539 Msa0626980:CDS 40.0%
TCGTAATCTGAATCAGGTTC+TGG - chr4_3:7069592-7069611 None:intergenic 40.0%
TGTCTTGCAGCTAAATGGTA+GGG - chr4_3:7069882-7069901 None:intergenic 40.0%
ATAATGCCATGCGAAAACCA+TGG - chr4_3:7069923-7069942 None:intergenic 40.0%
! ATGGTTTTCGCATGGCATTA+TGG + chr4_3:7069922-7069941 Msa0626980:CDS 40.0%
CCCAATATTTGTCAGCAATC+TGG - chr4_3:7070019-7070038 None:intergenic 40.0%
TCGGGGAAAAATTCAAATCC+AGG - chr4_3:7070137-7070156 None:intergenic 40.0%
ACTAAGTAGTGAGGATAGGA+GGG - chr4_3:7070199-7070218 None:intergenic 40.0%
AACTAAGTAGTGAGGATAGG+AGG - chr4_3:7070200-7070219 None:intergenic 40.0%
CCAAACTAAGTAGTGAGGAT+AGG - chr4_3:7070203-7070222 None:intergenic 40.0%
CCTATCCTCACTACTTAGTT+TGG + chr4_3:7070200-7070219 Msa0626980:exon 40.0%
TTGTCACACTGCACTCTTCT+CGG + chr4_3:7066204-7066223 Msa0626980:five_prime_UTR 45.0%
GATAAGCTTAATGCTGGTGG+TGG + chr4_3:7066721-7066740 Msa0626980:CDS 45.0%
TGGTGGAAATTTCCTCAGCA+TGG + chr4_3:7066741-7066760 Msa0626980:CDS 45.0%
GGATCACTGATGCATCAAAG+TGG + chr4_3:7066922-7066941 Msa0626980:intron 45.0%
CACAGATCCTAAAAGCAAGC+AGG - chr4_3:7066950-7066969 None:intergenic 45.0%
AAGTCTCATCACAGATTCGC+TGG - chr4_3:7067044-7067063 None:intergenic 45.0%
! CCAACGGGTTTGCAAATGAT+CGG - chr4_3:7067123-7067142 None:intergenic 45.0%
TGAGCCACCTTAAAACTCCA+TGG - chr4_3:7067265-7067284 None:intergenic 45.0%
!!! GGCTCAAAATGACGGACTTT+TGG + chr4_3:7067279-7067298 Msa0626980:intron 45.0%
! GTGTTATCGATTGCAGATGG+CGG - chr4_3:7067319-7067338 None:intergenic 45.0%
TGCTTCAGCACCTTACTCAT+TGG + chr4_3:7067524-7067543 Msa0626980:intron 45.0%
!! GGAAACTGTTGGTCTTGGAA+AGG + chr4_3:7067785-7067804 Msa0626980:CDS 45.0%
! TGATTTGGAGAAGGCAAGAG+TGG + chr4_3:7067833-7067852 Msa0626980:CDS 45.0%
GATTTGGAGAAGGCAAGAGT+GGG + chr4_3:7067834-7067853 Msa0626980:CDS 45.0%
CCGATTAAAGTTGCTCCAAC+AGG - chr4_3:7067972-7067991 None:intergenic 45.0%
TGAGGAAATTGATAGGTGGG+TGG + chr4_3:7068028-7068047 Msa0626980:CDS 45.0%
TCTTCGAACCCTCTTGTATC+GGG - chr4_3:7068076-7068095 None:intergenic 45.0%
CTCACAGAGGAAAGGATGTA+AGG + chr4_3:7068193-7068212 Msa0626980:CDS 45.0%
TATCCGGCACATGAGAATCT+TGG - chr4_3:7068229-7068248 None:intergenic 45.0%
TAAGTCTTGCCACCAGAAAG+TGG - chr4_3:7068269-7068288 None:intergenic 45.0%
GCAAGACTTATGAGCCTCAT+CGG + chr4_3:7068279-7068298 Msa0626980:CDS 45.0%
! TTATGAGCCTCATCGGTGTT+GGG + chr4_3:7068286-7068305 Msa0626980:CDS 45.0%
TTTCCTTGGTGAGGGATTCT+AGG + chr4_3:7068381-7068400 Msa0626980:CDS 45.0%
TGGGATGATAGAACATCGGT+TGG + chr4_3:7068488-7068507 Msa0626980:CDS 45.0%
GAAACCGCACAGTTCTTTGA+AGG + chr4_3:7068551-7068570 Msa0626980:CDS 45.0%
! CTGGTGATGAGTAAACATGG+TGG - chr4_3:7068651-7068670 None:intergenic 45.0%
TCACCAGAAGATTGTGGTTG+TGG + chr4_3:7068664-7068683 Msa0626980:CDS 45.0%
TGTCCACAACCACAATCTTC+TGG - chr4_3:7068670-7068689 None:intergenic 45.0%
GTTGTGGACAGTGAATTACC+TGG + chr4_3:7068680-7068699 Msa0626980:CDS 45.0%
ACAGTGAATTACCTGGTGGA+AGG + chr4_3:7068687-7068706 Msa0626980:CDS 45.0%
TGAATTACCTGGTGGAAGGT+CGG + chr4_3:7068691-7068710 Msa0626980:CDS 45.0%
ATTGCAGCACCTGGAAAGTT+AGG - chr4_3:7068836-7068855 None:intergenic 45.0%
AATCACAAAAGGCGGTCCAA+GGG + chr4_3:7068853-7068872 Msa0626980:CDS 45.0%
AACAACACATCCCAAGCGAT+CGG - chr4_3:7068914-7068933 None:intergenic 45.0%
ATCATCCGGAAATGTTACCG+GGG - chr4_3:7069023-7069042 None:intergenic 45.0%
GATCATCCGGAAATGTTACC+GGG - chr4_3:7069024-7069043 None:intergenic 45.0%
TTCCATGTCTCGTGATCATC+CGG - chr4_3:7069037-7069056 None:intergenic 45.0%
CAGCATCTTCAGGAGTTTCT+GGG - chr4_3:7069105-7069124 None:intergenic 45.0%
AGCTGGGCTTATTAGTGGAA+AGG + chr4_3:7069129-7069148 Msa0626980:CDS 45.0%
! TCCTTGGAAGCTCTTTTGCT+TGG + chr4_3:7069239-7069258 Msa0626980:CDS 45.0%
TCCAAGCAAAAGAGCTTCCA+AGG - chr4_3:7069243-7069262 None:intergenic 45.0%
! TGCAAAGCACCAATGTCTTC+AGG - chr4_3:7069283-7069302 None:intergenic 45.0%
TGCTTTGCATCTCATCCCAA+AGG + chr4_3:7069294-7069313 Msa0626980:CDS 45.0%
! GTACACAGTGAACTTTTCCC+CGG - chr4_3:7069353-7069372 None:intergenic 45.0%
TGTACGTTGTTGTCCCAATG+TGG + chr4_3:7069368-7069387 Msa0626980:CDS 45.0%
CGGTTCAAGCAATATTGGAC+TGG + chr4_3:7069416-7069435 Msa0626980:CDS 45.0%
!! AAGCAATATTGGACTGGCAG+AGG + chr4_3:7069422-7069441 Msa0626980:CDS 45.0%
TCTTTACTTCCCGATTACCG+AGG - chr4_3:7069540-7069559 None:intergenic 45.0%
! TCAGGTTCTGGTTGTTCAGA+AGG - chr4_3:7069580-7069599 None:intergenic 45.0%
GCTCTCTCGTAATCTGAATC+AGG - chr4_3:7069598-7069617 None:intergenic 45.0%
AGCTAAATGGTAGGGCTGAT+AGG - chr4_3:7069874-7069893 None:intergenic 45.0%
CTGTCTTGCAGCTAAATGGT+AGG - chr4_3:7069883-7069902 None:intergenic 45.0%
! TCAAGTCCATGGTTTTCGCA+TGG + chr4_3:7069914-7069933 Msa0626980:CDS 45.0%
GCATTATGGTATGAGCACCT+TGG + chr4_3:7069936-7069955 Msa0626980:CDS 45.0%
! CAGCAATCTGGTTCACCTTA+CGG - chr4_3:7070007-7070026 None:intergenic 45.0%
CCTTCACTAGCAACTCCAAT+CGG - chr4_3:7070098-7070117 None:intergenic 45.0%
! TGAATTTTTCCCCGACACCA+AGG + chr4_3:7070142-7070161 Msa0626980:CDS 45.0%
!!! AAAAAAAAAAAAGAATATTT+TGG + chr4_3:7066893-7066912 Msa0626980:intron 5.0%
CTTTAAGTAGGCCCCGTTAG+TGG + chr4_3:7066509-7066528 Msa0626980:intron 50.0%
!! AAGCTTAATGCTGGTGGTGG+TGG + chr4_3:7066724-7066743 Msa0626980:CDS 50.0%
!! AGTGGACCCTGCTTGCTTTT+AGG + chr4_3:7066940-7066959 Msa0626980:intron 50.0%
CCGATCATTTGCAAACCCGT+TGG + chr4_3:7067120-7067139 Msa0626980:intron 50.0%
AGTGGCCAAAATATCCGCCA+TGG - chr4_3:7067212-7067231 None:intergenic 50.0%
!!! GGACTTTTGGCTTTCCACCA+TGG + chr4_3:7067292-7067311 Msa0626980:intron 50.0%
! AAGAGCATATGTGCCTGTCG+AGG + chr4_3:7067992-7068011 Msa0626980:CDS 50.0%
CTTATGAGCCTCATCGGTGT+TGG + chr4_3:7068285-7068304 Msa0626980:CDS 50.0%
ATATCCTCCCAACACCGATG+AGG - chr4_3:7068296-7068315 None:intergenic 50.0%
! ATTCTAGGAGGCCAAAGGCT+GGG + chr4_3:7068396-7068415 Msa0626980:CDS 50.0%
TACCGCCATCATCAGGATTG+CGG - chr4_3:7068604-7068623 None:intergenic 50.0%
ATGATGCTACCGCCATCATC+AGG - chr4_3:7068611-7068630 None:intergenic 50.0%
!! TGATGGCGGTAGCATCATTC+AGG + chr4_3:7068613-7068632 Msa0626980:CDS 50.0%
GTGGACAGTGAATTACCTGG+TGG + chr4_3:7068683-7068702 Msa0626980:CDS 50.0%
! CCTTTTGTGATTGCAGCACC+TGG - chr4_3:7068845-7068864 None:intergenic 50.0%
! CCAGGTGCTGCAATCACAAA+AGG + chr4_3:7068842-7068861 Msa0626980:CDS 50.0%
! GGTGCTGCAATCACAAAAGG+CGG + chr4_3:7068845-7068864 Msa0626980:CDS 50.0%
CAATCACAAAAGGCGGTCCA+AGG + chr4_3:7068852-7068871 Msa0626980:CDS 50.0%
ATGTCATGCCAAGGTTCCCT+TGG - chr4_3:7068872-7068891 None:intergenic 50.0%
CGGGAATGAATGTCATGCCA+AGG - chr4_3:7068881-7068900 None:intergenic 50.0%
GACATTCATTCCCGCCTTGA+AGG + chr4_3:7068887-7068906 Msa0626980:CDS 50.0%
AACGATGGAGGAAGCAAGGT+GGG + chr4_3:7068945-7068964 Msa0626980:CDS 50.0%
TCCATCCCCGGTAACATTTC+CGG + chr4_3:7069015-7069034 Msa0626980:CDS 50.0%
TTCCGGATGATCACGAGACA+TGG + chr4_3:7069032-7069051 Msa0626980:CDS 50.0%
!!! ATTGATGGTGGGGCTGCTTT+TGG + chr4_3:7069076-7069095 Msa0626980:CDS 50.0%
!!! TTGATGGTGGGGCTGCTTTT+GGG + chr4_3:7069077-7069096 Msa0626980:CDS 50.0%
GCAGCATCTTCAGGAGTTTC+TGG - chr4_3:7069106-7069125 None:intergenic 50.0%
! GGAAGCTCTTTTGCTTGGAG+TGG + chr4_3:7069244-7069263 Msa0626980:CDS 50.0%
! CTCTTTTGCTTGGAGTGGTG+AGG + chr4_3:7069249-7069268 Msa0626980:CDS 50.0%
GCTTGAACCGATGCACTTTC+TGG - chr4_3:7069406-7069425 None:intergenic 50.0%
AGGATATCGTTCTGGCACTC+AGG + chr4_3:7069467-7069486 Msa0626980:CDS 50.0%
GGATATCGTTCTGGCACTCA+GGG + chr4_3:7069468-7069487 Msa0626980:CDS 50.0%
AGGGAATCGAGGAAGATCCT+CGG + chr4_3:7069494-7069513 Msa0626980:CDS 50.0%
CGTTCTTCTGCCTCGGTAAT+CGG + chr4_3:7069527-7069546 Msa0626980:CDS 50.0%
GTTCTTCTGCCTCGGTAATC+GGG + chr4_3:7069528-7069547 Msa0626980:CDS 50.0%
CATGAAACGTCGGGACTGTT+GGG - chr4_3:7069620-7069639 None:intergenic 50.0%
TCATGAAACGTCGGGACTGT+TGG - chr4_3:7069621-7069640 None:intergenic 50.0%
TCGCTCCGTCCATTGATCTT+TGG - chr4_3:7069827-7069846 None:intergenic 50.0%
AAAGATCAATGGACGGAGCG+AGG + chr4_3:7069826-7069845 Msa0626980:CDS 50.0%
AAGATCAATGGACGGAGCGA+GGG + chr4_3:7069827-7069846 Msa0626980:CDS 50.0%
!! AGGGACTCTGAGATAGCGAT+GGG + chr4_3:7069846-7069865 Msa0626980:CDS 50.0%
CTGGCTGTCTTGCAGCTAAA+TGG - chr4_3:7069887-7069906 None:intergenic 50.0%
AGGAGTCATGAAGCATGCCA+AGG - chr4_3:7069956-7069975 None:intergenic 50.0%
CACTTGCTTCGCTATCCGAT+TGG + chr4_3:7070080-7070099 Msa0626980:CDS 50.0%
CCGATTGGAGTTGCTAGTGA+AGG + chr4_3:7070095-7070114 Msa0626980:CDS 50.0%
AAGTAGTGAGGATAGGAGGG+AGG - chr4_3:7070196-7070215 None:intergenic 50.0%
AAGTAGGCCCCGTTAGTGGA+CGG + chr4_3:7066513-7066532 Msa0626980:intron 55.0%
!!! CAGCGCCATGGCGGATATTT+TGG + chr4_3:7067204-7067223 Msa0626980:intron 55.0%
!! TGTAACAGATGGTGGGGCCA+TGG + chr4_3:7067245-7067264 Msa0626980:intron 55.0%
! GGTGGGGCCATGGAGTTTTA+AGG + chr4_3:7067255-7067274 Msa0626980:intron 55.0%
!!! GGGGCCATGGAGTTTTAAGG+TGG + chr4_3:7067258-7067277 Msa0626980:intron 55.0%
TGGAGAAGGCAAGAGTGGGA+AGG + chr4_3:7067838-7067857 Msa0626980:CDS 55.0%
AGCATATGTGCCTGTCGAGG+AGG + chr4_3:7067995-7068014 Msa0626980:CDS 55.0%
CCATTCAAGACCTCCTCGAC+AGG - chr4_3:7068008-7068027 None:intergenic 55.0%
CCTGTCGAGGAGGTCTTGAA+TGG + chr4_3:7068005-7068024 Msa0626980:CDS 55.0%
CGAGGAGGTCTTGAATGGTG+AGG + chr4_3:7068010-7068029 Msa0626980:CDS 55.0%
ATGTCACGAAAGACCGCAGC+TGG + chr4_3:7068120-7068139 Msa0626980:CDS 55.0%
TGTCACGAAAGACCGCAGCT+GGG + chr4_3:7068121-7068140 Msa0626980:CDS 55.0%
CCTCCTAGAATCCCTCACCA+AGG - chr4_3:7068387-7068406 None:intergenic 55.0%
CCTTGGTGAGGGATTCTAGG+AGG + chr4_3:7068384-7068403 Msa0626980:CDS 55.0%
! GAGGGATTCTAGGAGGCCAA+AGG + chr4_3:7068391-7068410 Msa0626980:CDS 55.0%
! GATTCTAGGAGGCCAAAGGC+TGG + chr4_3:7068395-7068414 Msa0626980:CDS 55.0%
! TTCTAGGAGGCCAAAGGCTG+GGG + chr4_3:7068397-7068416 Msa0626980:CDS 55.0%
GCTGGGGGAGACACAACAAT+TGG + chr4_3:7068413-7068432 Msa0626980:CDS 55.0%
ACCGCCATCATCAGGATTGC+GGG - chr4_3:7068603-7068622 None:intergenic 55.0%
AAGCGATCGGTCCTTCAAGG+CGG - chr4_3:7068901-7068920 None:intergenic 55.0%
CCTTGAAGGACCGATCGCTT+GGG + chr4_3:7068901-7068920 Msa0626980:CDS 55.0%
GAGCAACGATGGAGGAAGCA+AGG + chr4_3:7068941-7068960 Msa0626980:CDS 55.0%
CAACGATGGAGGAAGCAAGG+TGG + chr4_3:7068944-7068963 Msa0626980:CDS 55.0%
ATGGAGGAAGCAAGGTGGGA+AGG + chr4_3:7068949-7068968 Msa0626980:CDS 55.0%
GGAAATGTTACCGGGGATGG+AGG - chr4_3:7069016-7069035 None:intergenic 55.0%
TCCGGAAATGTTACCGGGGA+TGG - chr4_3:7069019-7069038 None:intergenic 55.0%
CTGAAGATGCTGCGAGAGCT+GGG + chr4_3:7069113-7069132 Msa0626980:CDS 55.0%
GCGAGAGCTGGGCTTATTAG+TGG + chr4_3:7069124-7069143 Msa0626980:CDS 55.0%
TGTTGTCCCAATGTGGCCAG+AGG + chr4_3:7069375-7069394 Msa0626980:CDS 55.0%
GTTGTCCCAATGTGGCCAGA+GGG + chr4_3:7069376-7069395 Msa0626980:CDS 55.0%
! GGGTGTGCCAGAAAGTGCAT+CGG + chr4_3:7069396-7069415 Msa0626980:CDS 55.0%
! GGACTGGCAGAGGAGAACAA+TGG + chr4_3:7069432-7069451 Msa0626980:CDS 55.0%
GTTCTGGCACTCAGGGCAAA+GGG + chr4_3:7069475-7069494 Msa0626980:CDS 55.0%
ACTCAGGGCAAAGGGAATCG+AGG + chr4_3:7069483-7069502 Msa0626980:CDS 55.0%
!! GAGGGACTCTGAGATAGCGA+TGG + chr4_3:7069845-7069864 Msa0626980:CDS 55.0%
TCACTTGAGCACGACCTTCC+TGG + chr4_3:7070056-7070075 Msa0626980:CDS 55.0%
AGCGAAGCAAGTGTCCAGGA+AGG - chr4_3:7070073-7070092 None:intergenic 55.0%
GGATAGCGAAGCAAGTGTCC+AGG - chr4_3:7070077-7070096 None:intergenic 55.0%
! TTTTCCCCGACACCAAGGCT+CGG + chr4_3:7070147-7070166 Msa0626980:CDS 55.0%
!! AGAATCCGAGCCTTGGTGTC+GGG - chr4_3:7070155-7070174 None:intergenic 55.0%
! GAGAATCCGAGCCTTGGTGT+CGG - chr4_3:7070156-7070175 None:intergenic 55.0%
GACACCAAGGCTCGGATTCT+CGG + chr4_3:7070155-7070174 Msa0626980:CDS 55.0%
TCAACCCCGCCGTCCACTAA+CGG - chr4_3:7066525-7066544 None:intergenic 60.0%
TATCCGCCATGGCGCTGCTA+TGG - chr4_3:7067201-7067220 None:intergenic 60.0%
!! TTGCAGATGGCGGACCATGG+TGG - chr4_3:7067309-7067328 None:intergenic 60.0%
!! CGATTGCAGATGGCGGACCA+TGG - chr4_3:7067312-7067331 None:intergenic 60.0%
!! TGAGCCTCATCGGTGTTGGG+AGG + chr4_3:7068289-7068308 Msa0626980:CDS 60.0%
TCTAGGAGGCCAAAGGCTGG+GGG + chr4_3:7068398-7068417 Msa0626980:CDS 60.0%
GTTGTGTCTCCCCCAGCCTT+TGG - chr4_3:7068410-7068429 None:intergenic 60.0%
TGCCCCCGCAATCCTGATGA+TGG + chr4_3:7068596-7068615 Msa0626980:CDS 60.0%
CGCCATCATCAGGATTGCGG+GGG - chr4_3:7068601-7068620 None:intergenic 60.0%
CCGCCATCATCAGGATTGCG+GGG - chr4_3:7068602-7068621 None:intergenic 60.0%
!! CCCCGCAATCCTGATGATGG+CGG + chr4_3:7068599-7068618 Msa0626980:CDS 60.0%
CGCTTATCCGACCTTCCACC+AGG - chr4_3:7068701-7068720 None:intergenic 60.0%
GGGGGTCTCGACCTTTGTGA+TGG + chr4_3:7068740-7068759 Msa0626980:CDS 60.0%
AAGGCGGTCCAAGGGAACCT+TGG + chr4_3:7068861-7068880 Msa0626980:CDS 60.0%
AGCGATCGGTCCTTCAAGGC+GGG - chr4_3:7068900-7068919 None:intergenic 60.0%
GCCTTGAAGGACCGATCGCT+TGG + chr4_3:7068900-7068919 Msa0626980:CDS 60.0%
CCCAAGCGATCGGTCCTTCA+AGG - chr4_3:7068904-7068923 None:intergenic 60.0%
CCAGCTCTCGCAGCATCTTC+AGG - chr4_3:7069115-7069134 None:intergenic 60.0%
CCTGAAGATGCTGCGAGAGC+TGG + chr4_3:7069112-7069131 Msa0626980:CDS 60.0%
GCACACCCTCTGGCCACATT+GGG - chr4_3:7069384-7069403 None:intergenic 60.0%
! GCACTTTCTGGCACACCCTC+TGG - chr4_3:7069394-7069413 None:intergenic 60.0%
CGTTCTGGCACTCAGGGCAA+AGG + chr4_3:7069474-7069493 Msa0626980:CDS 60.0%
CCATGGACTTGACCACGTGC+TGG - chr4_3:7069906-7069925 None:intergenic 60.0%
CCAGCACGTGGTCAAGTCCA+TGG + chr4_3:7069903-7069922 Msa0626980:CDS 60.0%
GGAGATGTCACACAGCTGCC+TGG + chr4_3:7070116-7070135 Msa0626980:CDS 60.0%
!! GAATCCGAGCCTTGGTGTCG+GGG - chr4_3:7070154-7070173 None:intergenic 60.0%
ACCAAGGCTCGGATTCTCGG+CGG + chr4_3:7070158-7070177 Msa0626980:CDS 60.0%
! TAGGCCCCGTTAGTGGACGG+CGG + chr4_3:7066516-7066535 Msa0626980:intron 65.0%
AACCCCGCCGTCCACTAACG+GGG - chr4_3:7066523-7066542 None:intergenic 65.0%
CAACCCCGCCGTCCACTAAC+GGG - chr4_3:7066524-7066543 None:intergenic 65.0%
! AGTGGACGGCGGGGTTGATC+AGG + chr4_3:7066527-7066546 Msa0626980:intron 65.0%
! GTGGACGGCGGGGTTGATCA+GGG + chr4_3:7066528-7066547 Msa0626980:intron 65.0%
! ACGGCGGGGTTGATCAGGGT+TGG + chr4_3:7066532-7066551 Msa0626980:intron 65.0%
TGTCGGCCATAGCAGCGCCA+TGG + chr4_3:7067192-7067211 Msa0626980:intron 65.0%
AAAGACCGCAGCTGGGCTCG+AGG + chr4_3:7068128-7068147 Msa0626980:CDS 65.0%
GAATGCCTCGAGCCCAGCTG+CGG - chr4_3:7068136-7068155 None:intergenic 65.0%
GGCACACCCTCTGGCCACAT+TGG - chr4_3:7069385-7069404 None:intergenic 65.0%
GCTGCAAGACAGCCAGCACG+TGG + chr4_3:7069891-7069910 Msa0626980:CDS 65.0%
! AGGCCCCGTTAGTGGACGGC+GGG + chr4_3:7066517-7066536 Msa0626980:intron 70.0%
CGGCCATAGCAGCGCCATGG+CGG + chr4_3:7067195-7067214 Msa0626980:intron 70.0%
GCCGCCGAGAATCCGAGCCT+TGG - chr4_3:7070162-7070181 None:intergenic 70.0%
! GGCCCCGTTAGTGGACGGCG+GGG + chr4_3:7066518-7066537 Msa0626980:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 7066135 7070435 7066135 ID=Msa0626980;Name=Msa0626980
chr4_3 mRNA 7066135 7070435 7066135 ID=Msa0626980-mRNA-1;Parent=Msa0626980;Name=Msa0626980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=168|1|0.75|1|0.66|0.5|4|218|808
chr4_3 exon 7066135 7066295 7066135 ID=Msa0626980-mRNA-1:exon:2030;Parent=Msa0626980-mRNA-1
chr4_3 exon 7066663 7066762 7066663 ID=Msa0626980-mRNA-1:exon:2031;Parent=Msa0626980-mRNA-1
chr4_3 exon 7067768 7069667 7067768 ID=Msa0626980-mRNA-1:exon:2032;Parent=Msa0626980-mRNA-1
chr4_3 exon 7069784 7070435 7069784 ID=Msa0626980-mRNA-1:exon:2033;Parent=Msa0626980-mRNA-1
chr4_3 five_prime_UTR 7066135 7066295 7066135 ID=Msa0626980-mRNA-1:five_prime_utr;Parent=Msa0626980-mRNA-1
chr4_3 five_prime_UTR 7066663 7066669 7066663 ID=Msa0626980-mRNA-1:five_prime_utr;Parent=Msa0626980-mRNA-1
chr4_3 CDS 7066670 7066762 7066670 ID=Msa0626980-mRNA-1:cds;Parent=Msa0626980-mRNA-1
chr4_3 CDS 7067768 7069667 7067768 ID=Msa0626980-mRNA-1:cds;Parent=Msa0626980-mRNA-1
chr4_3 CDS 7069784 7070217 7069784 ID=Msa0626980-mRNA-1:cds;Parent=Msa0626980-mRNA-1
chr4_3 three_prime_UTR 7070218 7070435 7070218 ID=Msa0626980-mRNA-1:three_prime_utr;Parent=Msa0626980-mRNA-1
Gene Sequence

>Msa0626980

ATGGCACAAATTCATCTTCATGGTACTCTTCATGCTACTATCTATGAGGTTGATAAGCTTAATGCTGGTGGTGGTGGAAATTTCCTCAGCATGATCAGGCAAAACATTGAGGAAACTGTTGGTCTTGGAAAGGGAGTTACTAAACTCTATGCTACCATTGATTTGGAGAAGGCAAGAGTGGGAAGGACAAGAATTATTGAAAATGAGCATACTAATCCCAAATGGTACGAGTCTTTTCACATTTACTGTGCTCATATGGCTTCAGATATCATATTCACTGTGAAAGATGATAATCCTGTTGGAGCAACTTTAATCGGAAGAGCATATGTGCCTGTCGAGGAGGTCTTGAATGGTGAGGAAATTGATAGGTGGGTGGAAATTTTGGACACTGAAAAAAACCCGATACAAGAGGGTTCGAAGATCCATGTGAAGCTGCAATATTTTGATGTCACGAAAGACCGCAGCTGGGCTCGAGGCATTCAAAGCGCTAAATTTCCTGGAGTTCCGTATACTTTCTTCTCACAGAGGAAAGGATGTAAGGTATCTCTTTACCAAGATTCTCATGTGCCGGATAATTTCATCCCTAAAATACCACTTTCTGGTGGCAAGACTTATGAGCCTCATCGGTGTTGGGAGGATATTTATGATGCCATCACCAATGCAAAACACATGATATACATTACCGGTTGGTCTGTTTATACCGAAATTTCCTTGGTGAGGGATTCTAGGAGGCCAAAGGCTGGGGGAGACACAACAATTGGTGAGCTTCTAAAGAAAAAGTCTAGTGAAGGTGTTAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCGGTTGGTTTGTTGAAAAAGGATGGATTGATGGCTACTCATGACGAAGAAACCGCACAGTTCTTTGAAGGTACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGATGATGGCGGTAGCATCATTCAGGATTTACAAGTTTCCACCATGTTTACTCATCACCAGAAGATTGTGGTTGTGGACAGTGAATTACCTGGTGGAAGGTCGGATAAGCGAAGAATTGTGAGTTTTGTTGGGGGTCTCGACCTTTGTGATGGAAGATATGATACTCCATTCCACTCACTTTTTAGAACTCTTGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCAGGTGCTGCAATCACAAAAGGCGGTCCAAGGGAACCTTGGCATGACATTCATTCCCGCCTTGAAGGACCGATCGCTTGGGATGTGTTGTTTAACTTTGAGCAACGATGGAGGAAGCAAGGTGGGAAGGATTTACTTGTCTCTCTGAGGGAGCTTGAAGATTCTATTATTCCTCCATCCCCGGTAACATTTCCGGATGATCACGAGACATGGAATGTTCAGCTGTTTAGATCTATTGATGGTGGGGCTGCTTTTGGGTTCCCAGAAACTCCTGAAGATGCTGCGAGAGCTGGGCTTATTAGTGGAAAGGATAATATCATCGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGGCGTGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCTTGGAGTGGTGAGGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTCATCCCAAAGGAACTTTCACTTAAGATTATGAGTAAGATTGAAGCCGGGGAAAAGTTCACTGTGTACGTTGTTGTCCCAATGTGGCCAGAGGGTGTGCCAGAAAGTGCATCGGTTCAAGCAATATTGGACTGGCAGAGGAGAACAATGGAGATGATGTATAAGGATATCGTTCTGGCACTCAGGGCAAAGGGAATCGAGGAAGATCCTCGGAATTATTTGACGTTCTTCTGCCTCGGTAATCGGGAAGTAAAGAAACAAGGAGAGTACGAGCCTTCTGAACAACCAGAACCTGATTCAGATTACGAGAGAGCCCAACAGTCCCGACGTTTCATGATCTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCGTTGGATCTGCCAACATCAACCAAAGATCAATGGACGGAGCGAGGGACTCTGAGATAGCGATGGGAGCCTATCAGCCCTACCATTTAGCTGCAAGACAGCCAGCACGTGGTCAAGTCCATGGTTTTCGCATGGCATTATGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTTCATCCAGAAAATCAAGAATGTATCCGTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTCTATTCAAATGATTCACTTGAGCACGACCTTCCTGGACACTTGCTTCGCTATCCGATTGGAGTTGCTAGTGAAGGAGATGTCACACAGCTGCCTGGATTTGAATTTTTCCCCGACACCAAGGCTCGGATTCTCGGCGGCAAAGCTGATTACCTCCCTCCTATCCTCACTACTTAG
Protein sequence

>Msa0626980

MAQIHLHGTLHATIYEVDKLNAGGGGNFLSMIRQNIEETVGLGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWYESFHIYCAHMASDIIFTVKDDNPVGATLIGRAYVPVEEVLNGEEIDRWVEILDTEKNPIQEGSKIHVKLQYFDVTKDRSWARGIQSAKFPGVPYTFFSQRKGCKVSLYQDSHVPDNFIPKIPLSGGKTYEPHRCWEDIYDAITNAKHMIYITGWSVYTEISLVRDSRRPKAGGDTTIGELLKKKSSEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTDVHCVLCPRNPDDGGSIIQDLQVSTMFTHHQKIVVVDSELPGGRSDKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDSIIPPSPVTFPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSGEDIKPEDIGALHLIPKELSLKIMSKIEAGEKFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIVLALRAKGIEEDPRNYLTFFCLGNREVKKQGEYEPSEQPEPDSDYERAQQSRRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLAARQPARGQVHGFRMALWYEHLGMLHDSFLHPENQECIRKVNQIADKYWDLYSNDSLEHDLPGHLLRYPIGVASEGDVTQLPGFEFFPDTKARILGGKADYLPPILTT*