AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0587180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0587180 MtrunA17_Chr4g0003411 98.762 808 10 0 1 808 1 808 0.0 1665
Msa0587180 MtrunA17_Chr2g0333021 85.167 809 119 1 1 808 1 809 0.0 1452
Msa0587180 MtrunA17_Chr3g0137821 64.140 831 266 11 1 808 1 822 0.0 1082
Msa0587180 MtrunA17_Chr3g0137791 63.341 832 266 10 6 808 5 826 0.0 1070
Msa0587180 MtrunA17_Chr7g0246481 46.303 825 389 17 6 796 299 1103 0.0 726
Msa0587180 MtrunA17_Chr8g0350951 47.296 795 381 15 26 796 258 1038 0.0 721
Msa0587180 MtrunA17_Chr5g0398161 47.594 769 366 14 50 796 90 843 0.0 719
Msa0587180 MtrunA17_Chr5g0398171 45.421 819 400 17 6 796 38 837 0.0 711
Msa0587180 MtrunA17_Chr5g0406161 45.963 805 371 14 50 808 86 872 0.0 706
Msa0587180 MtrunA17_Chr8g0380631 47.177 797 364 17 50 808 72 849 0.0 699
Msa0587180 MtrunA17_Chr3g0143471 45.936 812 368 20 50 808 73 866 0.0 682
Msa0587180 MtrunA17_Chr2g0330431 42.222 810 403 19 6 808 5 756 0.0 613
Msa0587180 MtrunA17_Chr8g0341931 41.430 811 402 20 6 808 8 753 0.0 590
Msa0587180 MtrunA17_Chr5g0406151 54.930 71 29 1 320 390 12 79 2.24e-22 92.0
Msa0587180 MtrunA17_Chr1g0192401 32.636 239 124 10 497 725 733 944 4.70e-21 99.4
Msa0587180 MtrunA17_Chr1g0192401 29.825 228 118 10 211 426 362 559 7.85e-16 82.4
Msa0587180 MtrunA17_Chr2g0295411 30.924 249 132 9 456 692 736 956 2.37e-18 90.5
Msa0587180 MtrunA17_Chr2g0295411 27.039 233 119 8 211 426 388 586 7.77e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0587180 AT3G15730.1 81.728 810 146 2 1 808 1 810 0.0 1420
Msa0587180 AT1G52570.1 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0587180 AT1G52570.3 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0587180 AT1G52570.2 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0587180 AT5G25370.1 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0587180 AT5G25370.3 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0587180 AT5G25370.2 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0587180 AT5G25370.4 64.334 743 257 6 72 808 5 745 0.0 1000
Msa0587180 AT2G42010.1 45.510 824 394 17 6 796 271 1072 0.0 729
Msa0587180 AT2G42010.2 44.444 846 396 17 6 796 271 1097 0.0 723
Msa0587180 AT4G00240.3 46.545 767 377 13 50 796 11 764 0.0 715
Msa0587180 AT4G11840.1 45.157 826 404 15 6 796 44 855 0.0 714
Msa0587180 AT4G00240.1 45.512 791 393 14 26 796 144 916 0.0 714
Msa0587180 AT4G00240.2 46.545 767 377 13 50 796 128 881 0.0 714
Msa0587180 AT4G11830.2 44.928 828 403 15 6 796 34 845 0.0 714
Msa0587180 AT4G11830.1 46.323 775 372 13 50 796 55 813 0.0 712
Msa0587180 AT4G11850.1 45.200 823 404 16 6 796 40 847 0.0 703
Msa0587180 AT4G11840.2 44.606 825 380 15 6 796 44 825 0.0 693
Msa0587180 AT4G35790.2 46.491 798 368 17 50 808 80 857 0.0 677
Msa0587180 AT4G35790.1 46.106 809 366 18 50 808 80 868 0.0 670
Msa0587180 AT1G55180.2 40.678 767 402 17 50 808 19 740 0.0 586
Msa0587180 AT1G55180.1 39.286 812 427 18 5 808 9 762 0.0 585
Msa0587180 AT4G35790.3 46.242 612 282 12 50 626 80 679 1.09e-173 517
Msa0587180 AT4G11830.4 43.669 616 307 11 6 596 34 634 2.99e-169 503
Msa0587180 AT4G11830.3 43.907 599 296 11 6 579 34 617 9.30e-165 492
Msa0587180 AT3G05630.1 30.932 236 126 8 499 724 714 922 3.56e-20 96.7
Msa0587180 AT3G05630.1 27.329 322 155 14 131 426 304 572 3.07e-15 80.9
Msa0587180 AT3G16785.6 32.283 254 122 11 456 692 710 930 3.48e-19 93.6
Msa0587180 AT3G16785.6 30.942 223 104 9 220 426 389 577 1.26e-15 82.0
Msa0587180 AT3G16785.5 32.283 254 122 11 456 692 710 930 3.48e-19 93.6
Msa0587180 AT3G16785.5 30.942 223 104 9 220 426 389 577 1.26e-15 82.0
Msa0587180 AT3G16785.4 32.283 254 122 11 456 692 710 930 3.84e-19 93.6
Msa0587180 AT3G16785.4 30.942 223 104 9 220 426 389 577 1.24e-15 82.0
Msa0587180 AT3G16785.1 32.283 254 122 11 456 692 710 930 3.86e-19 93.6
Msa0587180 AT3G16785.1 30.942 223 104 9 220 426 389 577 1.30e-15 82.0
Msa0587180 AT3G16785.3 32.283 254 122 11 456 692 710 930 3.87e-19 93.6
Msa0587180 AT3G16785.3 30.942 223 104 9 220 426 389 577 1.18e-15 82.0
Msa0587180 AT3G16785.2 32.283 254 122 11 456 692 710 930 3.87e-19 93.6
Msa0587180 AT3G16785.2 30.942 223 104 9 220 426 389 577 1.18e-15 82.0

Find 242 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGGTGGGTGGAAATTT+TGG 0.132980 4_2:+8652464 Msa0587180:CDS
GCTTGAACCGATGCACTTTC+TGG 0.142366 4_2:-8653830 None:intergenic
ATTGATGGTGGGGCTGCTTT+TGG 0.174765 4_2:+8653503 Msa0587180:CDS
AGGAAGATGAAGAGAATAAA+AGG 0.186748 4_2:-8650681 None:intergenic
GCAGCATCTTCAGGAGTTTC+TGG 0.186898 4_2:-8653530 None:intergenic
ATCGGTTGGTTTGTTGAAAA+AGG 0.188851 4_2:+8652929 Msa0587180:CDS
CGTTCTTCTGCCTCGGTAAT+CGG 0.218124 4_2:+8653954 Msa0587180:CDS
TCCATCCCCGGTAACATTTC+CGG 0.219913 4_2:+8653442 Msa0587180:CDS
ATCCCTAAAATACCACTTTC+TGG 0.238358 4_2:+8652681 Msa0587180:CDS
TCGCTCCGTCCATTGATCTT+TGG 0.259842 4_2:-8654251 None:intergenic
TTTCCTTGGTGAGGGATTCT+AGG 0.266899 4_2:+8652808 Msa0587180:CDS
ACCAGATTGCTGACAAATAT+TGG 0.280067 4_2:+8654442 Msa0587180:CDS
AGGATTTACTTGTCTCTCTA+AGG 0.282625 4_2:+8653396 Msa0587180:CDS
CCTATCCTCACTACTTAGTT+TGG 0.297118 4_2:+8654627 Msa0587180:exon
CCAGCTCTCGCAGCATCTTC+AGG 0.308289 4_2:-8653539 None:intergenic
AAAAGTCTAGTGAAGGTGTT+AGG 0.315711 4_2:+8652877 Msa0587180:CDS
ACTCTATGCTACCATTGATT+TGG 0.326580 4_2:+8652245 Msa0587180:CDS
ACCGCCATCATCAGGATTGC+GGG 0.327108 4_2:-8653027 None:intergenic
CCTGTTGGAGCAACTTTAAT+CGG 0.329996 4_2:+8652396 Msa0587180:CDS
TCACTTGAGCACGACCTTCC+TGG 0.343592 4_2:+8654483 Msa0587180:CDS
CTTGAACCGATGCACTTTCT+GGG 0.343605 4_2:-8653829 None:intergenic
GTGAAAAGACTCGTACCATT+TGG 0.347746 4_2:-8652319 None:intergenic
ATCTTAAGTGAAAGTTCCTT+TGG 0.350014 4_2:-8653737 None:intergenic
CCCAATATTTGTCAGCAATC+TGG 0.350230 4_2:-8654443 None:intergenic
ATCCCTCACCAAGGAAATTT+CGG 0.354270 4_2:-8652802 None:intergenic
TTTCATCAACCTAACTTTCC+AGG 0.354896 4_2:+8653251 Msa0587180:CDS
GACACCAAGGCTCGGATTCT+CGG 0.360309 4_2:+8654582 Msa0587180:CDS
TGCATCGGTTCAAGCAATAT+TGG 0.369787 4_2:+8653838 Msa0587180:CDS
CTCTGTGAGAAGAAAGTATA+CGG 0.369951 4_2:-8652606 None:intergenic
TCACATTTACTGTGCTCATA+TGG 0.370819 4_2:+8652338 Msa0587180:CDS
TGAAAAGACTCGTACCATTT+GGG 0.379443 4_2:-8652318 None:intergenic
ATGCTTATATTAATGCTATT+CGG 0.380918 4_2:+8653606 Msa0587180:CDS
CCGATTAAAGTTGCTCCAAC+AGG 0.380987 4_2:-8652396 None:intergenic
TCGTAATCTGAATCAGGTTC+TGG 0.383287 4_2:-8654016 None:intergenic
TTCTAGGAGGCCAAAGGCTG+GGG 0.387473 4_2:+8652824 Msa0587180:CDS
GCCTTGAAGGACCGATCGCT+TGG 0.387667 4_2:+8653327 Msa0587180:CDS
CTGGCTGTCTTGCAGCTAAA+TGG 0.393197 4_2:-8654311 None:intergenic
ATTGAGGAAACTGTTGGTCT+TGG 0.395386 4_2:+8652207 Msa0587180:CDS
TGTCCACAACCACAATCTTC+TGG 0.398916 4_2:-8653094 None:intergenic
ATGTCACGAAAGACCGCAGC+TGG 0.399882 4_2:+8652547 Msa0587180:CDS
AGAATCCGAGCCTTGGTGTC+GGG 0.406985 4_2:-8654579 None:intergenic
GTTCTTCTGCCTCGGTAATC+GGG 0.408625 4_2:+8653955 Msa0587180:CDS
CAGCATCTTCAGGAGTTTCT+GGG 0.410189 4_2:-8653529 None:intergenic
TGCAAAGCACCAATGTCTTC+AGG 0.412451 4_2:-8653707 None:intergenic
ATTGCAGCACCTGGAAAGTT+AGG 0.413190 4_2:-8653260 None:intergenic
AAACTTACCTATCATCATCT+TGG 0.413744 4_2:-8654080 None:intergenic
TGATGGCGGTAGCATCATTC+AGG 0.414188 4_2:+8653040 Msa0587180:CDS
CCTGAAGATGCTGCGAGAGC+TGG 0.415758 4_2:+8653539 Msa0587180:CDS
ATTCAAAGCGCTAAATTTCC+TGG 0.415896 4_2:+8652579 Msa0587180:CDS
ATGGCACAAATTCATCTTCA+TGG 0.419518 4_2:+8651099 Msa0587180:CDS
CCAGATTGCTGACAAATATT+GGG 0.419715 4_2:+8654443 Msa0587180:CDS
TGATCATCCGGAAATGTTAC+CGG 0.420713 4_2:-8653449 None:intergenic
CAGCAATCTGGTTCACCTTA+CGG 0.421232 4_2:-8654431 None:intergenic
GGGACACCCTCTGGCCACAT+TGG 0.421738 4_2:-8653809 None:intergenic
GGACACCCTCTGGCCACATT+GGG 0.423065 4_2:-8653808 None:intergenic
TTCACATTCTCTTCAAAACT+TGG 0.423563 4_2:+8650705 Msa0587180:five_prime_UTR
TTCCATGTCTCGTGATCATC+CGG 0.424135 4_2:-8653461 None:intergenic
ATTGAAAATCAGTATTTCCT+TGG 0.426891 4_2:+8653650 Msa0587180:CDS
TTAACTGCTATGACTTTAGC+TGG 0.427079 4_2:+8654818 Msa0587180:three_prime_UTR
CATGAAACGTCGGGACTGTT+GGG 0.428061 4_2:-8654044 None:intergenic
CAGCTGTTTAGATCTATTGA+TGG 0.430877 4_2:+8653488 Msa0587180:CDS
GATGTACAAGGATATCGTTC+TGG 0.435578 4_2:+8653886 Msa0587180:CDS
GTTCATACCAAGATGATGAT+AGG 0.435880 4_2:+8654073 Msa0587180:CDS
TCTTCGAACCCTCTTGTATC+GGG 0.436117 4_2:-8652500 None:intergenic
CGCTTATCCGACCTTCCACC+AGG 0.436478 4_2:-8653125 None:intergenic
GGAAGATGAAGAGAATAAAA+GGG 0.437664 4_2:-8650680 None:intergenic
TCCGGAAATGTTACCGGGGA+TGG 0.438701 4_2:-8653443 None:intergenic
AGCTAAATGGTAGGGCTGAT+AGG 0.439308 4_2:-8654298 None:intergenic
TCTTAAGTGAAAGTTCCTTT+GGG 0.441263 4_2:-8653736 None:intergenic
TGTTTAGATCTATTGATGGT+GGG 0.446034 4_2:+8653492 Msa0587180:CDS
TCATGAAACGTCGGGACTGT+TGG 0.446105 4_2:-8654045 None:intergenic
CTGTCTTGCAGCTAAATGGT+AGG 0.447434 4_2:-8654307 None:intergenic
GACATTCATTCCCGCCTTGA+AGG 0.449178 4_2:+8653314 Msa0587180:CDS
TTCAAAGTTCAAACCACAAA+TGG 0.450978 4_2:-8654715 None:intergenic
GTGACAAAACAATGGATCAT+AGG 0.451368 4_2:-8650623 None:intergenic
ATCTTCGAACCCTCTTGTAT+CGG 0.455754 4_2:-8652501 None:intergenic
AAACACATGATATACATTAC+CGG 0.460467 4_2:+8652765 Msa0587180:CDS
TGGTAATGAAAACAAAGATT+AGG 0.461452 4_2:-8654695 None:intergenic
GCACTTTCTGGGACACCCTC+TGG 0.462871 4_2:-8653818 None:intergenic
AAAGTCTAGTGAAGGTGTTA+GGG 0.463222 4_2:+8652878 Msa0587180:CDS
GAAACCGCACAGTTCTTTGA+AGG 0.467829 4_2:+8652978 Msa0587180:CDS
GATTCTAGGAGGCCAAAGGC+TGG 0.467985 4_2:+8652822 Msa0587180:CDS
GCCGCCGAGAATCCGAGCCT+TGG 0.470752 4_2:-8654586 None:intergenic
TGTTTATACCGAAATTTCCT+TGG 0.471207 4_2:+8652794 Msa0587180:CDS
TATCCGGCACATGAGAATCT+TGG 0.471426 4_2:-8652653 None:intergenic
ATGATGCTACCGCCATCATC+AGG 0.471464 4_2:-8653035 None:intergenic
GCGAGAGCTGGGCTTATTAG+TGG 0.471776 4_2:+8653551 Msa0587180:CDS
CACTTGCTTCGCTATCCGAT+TGG 0.472419 4_2:+8654507 Msa0587180:CDS
TCACCAGAAGATTGTGGTTG+TGG 0.472585 4_2:+8653091 Msa0587180:CDS
GCTCTCTCGTAATCTGAATC+AGG 0.473696 4_2:-8654022 None:intergenic
AAGCTTAATGCTGGTGGTGG+TGG 0.475675 4_2:+8651153 Msa0587180:CDS
TTCGGTATAAACAGACCAAC+CGG 0.477585 4_2:-8652784 None:intergenic
AACTAAGTAGTGAGGATAGG+AGG 0.480878 4_2:-8654624 None:intergenic
ATTCTAGGAGGCCAAAGGCT+GGG 0.483116 4_2:+8652823 Msa0587180:CDS
CTGAAGATGCTGCGAGAGCT+GGG 0.483144 4_2:+8653540 Msa0587180:CDS
TTATGAGCCTCATCGGTGTT+GGG 0.483969 4_2:+8652713 Msa0587180:CDS
CCTTGAAGGACCGATCGCTT+GGG 0.484290 4_2:+8653328 Msa0587180:CDS
CTCACAGAGGAAAGGATGTA+AGG 0.488198 4_2:+8652620 Msa0587180:CDS
CTTATGAGCCTCATCGGTGT+TGG 0.488671 4_2:+8652712 Msa0587180:CDS
CCCAAGCGATCGGTCCTTCA+AGG 0.490151 4_2:-8653328 None:intergenic
TTACCAAGATTCTCATGTGC+CGG 0.490601 4_2:+8652650 Msa0587180:CDS
TCAGGTTCTGGTTGTTCAGA+AGG 0.491713 4_2:-8654004 None:intergenic
GGAGATGTCACACAGCTGCC+TGG 0.492596 4_2:+8654543 Msa0587180:CDS
CCAGGTGCTGCAATCACAAA+AGG 0.496013 4_2:+8653269 Msa0587180:CDS
CCATTCAAGACCTCCTCGAC+AGG 0.496478 4_2:-8652432 None:intergenic
CATTGATCTTTGGTTGATGT+TGG 0.498653 4_2:-8654241 None:intergenic
AGGATATCGTTCTGGCACTC+AGG 0.498950 4_2:+8653894 Msa0587180:CDS
TACCGAAATTTCCTTGGTGA+GGG 0.498969 4_2:+8652800 Msa0587180:CDS
TTCTATTATTCCTCCATCCC+CGG 0.504693 4_2:+8653430 Msa0587180:CDS
CTGTTTAGATCTATTGATGG+TGG 0.506397 4_2:+8653491 Msa0587180:CDS
ATTATGAGTAAGATTGAAGC+CGG 0.506694 4_2:+8653758 Msa0587180:CDS
CAATCACAAAAGGCGGTCCA+AGG 0.512335 4_2:+8653279 Msa0587180:CDS
CGTTCTGGCACTCAGGGCAA+AGG 0.513948 4_2:+8653901 Msa0587180:CDS
CCTTCACTAGCAACTCCAAT+CGG 0.513962 4_2:-8654522 None:intergenic
GAAACTGTTGGTCTTGGAAA+GGG 0.514436 4_2:+8652213 Msa0587180:CDS
GATCATCCGGAAATGTTACC+GGG 0.516686 4_2:-8653448 None:intergenic
TGGTGAGGAAATTGATAGGT+GGG 0.528326 4_2:+8652452 Msa0587180:CDS
AAGCAATATTGGACTGGCAG+AGG 0.531832 4_2:+8653849 Msa0587180:CDS
AACATAGATCATGAAACGTC+GGG 0.533395 4_2:-8654053 None:intergenic
ATGTCATGCCAAGGTTCCCT+TGG 0.535392 4_2:-8653296 None:intergenic
AGCGATCGGTCCTTCAAGGC+GGG 0.535565 4_2:-8653324 None:intergenic
GAGAATCCGAGCCTTGGTGT+CGG 0.538506 4_2:-8654580 None:intergenic
TCCAAGCAAAAGAGCTTCCA+AGG 0.539099 4_2:-8653667 None:intergenic
TAAGTCTTGCCACCAGAAAG+TGG 0.539707 4_2:-8652693 None:intergenic
CCATGGACTTGACCACGTGC+TGG 0.539957 4_2:-8654330 None:intergenic
TATTTGACGTTCTTCTGCCT+CGG 0.540130 4_2:+8653947 Msa0587180:CDS
AAGAAAGTATACGGAACTCC+AGG 0.540377 4_2:-8652597 None:intergenic
GTTTAGATCTATTGATGGTG+GGG 0.540703 4_2:+8653493 Msa0587180:CDS
CAAAATATTGCAGCTTCACA+TGG 0.543780 4_2:-8652524 None:intergenic
TCTTGCCTTCTCCAAATCAA+TGG 0.546831 4_2:-8652256 None:intergenic
TGATTTGGAGAAGGCAAGAG+TGG 0.552030 4_2:+8652260 Msa0587180:CDS
AAGGCGGTCCAAGGGAACCT+TGG 0.552221 4_2:+8653288 Msa0587180:CDS
GTGAAAGATGATAATCCTGT+TGG 0.552822 4_2:+8652381 Msa0587180:CDS
CCAGCACGTGGTCAAGTCCA+TGG 0.552842 4_2:+8654330 Msa0587180:CDS
ATGAGCATACTAATCCCAAA+TGG 0.553693 4_2:+8652304 Msa0587180:CDS
GTTCTGGCACTCAGGGCAAA+GGG 0.553846 4_2:+8653902 Msa0587180:CDS
TGCTACCATTGATTTGGAGA+AGG 0.554396 4_2:+8652251 Msa0587180:CDS
GGATTTACTTGTCTCTCTAA+GGG 0.554563 4_2:+8653397 Msa0587180:CDS
CAAAACATTGAGGAAACTGT+TGG 0.557099 4_2:+8652201 Msa0587180:CDS
GGAAACTGTTGGTCTTGGAA+AGG 0.558000 4_2:+8652212 Msa0587180:CDS
CCAAACTAAGTAGTGAGGAT+AGG 0.559043 4_2:-8654627 None:intergenic
CAACATCAACCAAAGATCAA+TGG 0.560182 4_2:+8654242 Msa0587180:CDS
TGAATGGTGAGGAAATTGAT+AGG 0.560352 4_2:+8652448 Msa0587180:CDS
TTCCGGATGATCACGAGACA+TGG 0.561317 4_2:+8653459 Msa0587180:CDS
GATATTAAGCCTGAAGACAT+TGG 0.562253 4_2:+8653698 Msa0587180:CDS
TCTTCATGCTACTATCTATG+AGG 0.563357 4_2:+8651125 Msa0587180:CDS
GATGACGAATACATAATCGT+TGG 0.564804 4_2:+8654213 Msa0587180:CDS
ATACCGAAATTTCCTTGGTG+AGG 0.565309 4_2:+8652799 Msa0587180:CDS
AACGATGGAGGAAGCAAGGT+GGG 0.565356 4_2:+8653372 Msa0587180:CDS
AAAGACCGCAGCTGGGCTCG+AGG 0.565566 4_2:+8652555 Msa0587180:CDS
GGATATCGTTCTGGCACTCA+GGG 0.565745 4_2:+8653895 Msa0587180:CDS
CGGTTCAAGCAATATTGGAC+TGG 0.566255 4_2:+8653843 Msa0587180:CDS
TTATGAGTAAGATTGAAGCC+GGG 0.567721 4_2:+8653759 Msa0587180:CDS
AAGTAGTGAGGATAGGAGGG+AGG 0.571376 4_2:-8654620 None:intergenic
TGGGATGATAGAACATCGGT+TGG 0.573109 4_2:+8652915 Msa0587180:CDS
TGTCTTGCAGCTAAATGGTA+GGG 0.573776 4_2:-8654306 None:intergenic
CCGCCATCATCAGGATTGCG+GGG 0.573969 4_2:-8653026 None:intergenic
ACTTTCTTCTCACAGAGGAA+AGG 0.574250 4_2:+8652612 Msa0587180:CDS
TACTCATCACCAGAAGATTG+TGG 0.574698 4_2:+8653085 Msa0587180:CDS
GATAAGCTTAATGCTGGTGG+TGG 0.575966 4_2:+8651150 Msa0587180:CDS
GAATGCCTCGAGCCCAGCTG+CGG 0.576491 4_2:-8652560 None:intergenic
TACCGCCATCATCAGGATTG+CGG 0.579693 4_2:-8653028 None:intergenic
ACTAAGTAGTGAGGATAGGA+GGG 0.580152 4_2:-8654623 None:intergenic
GGATAGCGAAGCAAGTGTCC+AGG 0.581630 4_2:-8654501 None:intergenic
CCTGTCGAGGAGGTCTTGAA+TGG 0.582151 4_2:+8652432 Msa0587180:CDS
AGCTGGGCTTATTAGTGGAA+AGG 0.583055 4_2:+8653556 Msa0587180:CDS
TGCTTTGCATCTCATCCCAA+AGG 0.583132 4_2:+8653721 Msa0587180:CDS
GAATCCGAGCCTTGGTGTCG+GGG 0.583277 4_2:-8654578 None:intergenic
GCAAGACTTATGAGCCTCAT+CGG 0.583714 4_2:+8652706 Msa0587180:CDS
TAGGTTGATGAAAATCATCA+TGG 0.587769 4_2:-8653241 None:intergenic
ACAGATCAGGCAAAACATTG+AGG 0.589416 4_2:+8652191 Msa0587180:intron
AAAGATCAATGGACGGAGCG+AGG 0.593749 4_2:+8654253 Msa0587180:CDS
GAGGGACTCTGAGATAGCGA+TGG 0.594266 4_2:+8654272 Msa0587180:CDS
ATGGAGGAAGCAAGGTGGGA+AGG 0.595810 4_2:+8653376 Msa0587180:CDS
GGAAATGTTACCGGGGATGG+AGG 0.599535 4_2:-8653440 None:intergenic
AGGGACTCTGAGATAGCGAT+GGG 0.600455 4_2:+8654273 Msa0587180:CDS
GAGGTTGATAAGCTTAATGC+TGG 0.603431 4_2:+8651144 Msa0587180:CDS
AAATCAAGAATGTATCCGTA+AGG 0.604233 4_2:+8654416 Msa0587180:CDS
ACATGATATACATTACCGGT+TGG 0.606826 4_2:+8652769 Msa0587180:CDS
CCGATTGGAGTTGCTAGTGA+AGG 0.611060 4_2:+8654522 Msa0587180:CDS
TATGAGTAAGATTGAAGCCG+GGG 0.612358 4_2:+8653760 Msa0587180:CDS
CCTTGGTGAGGGATTCTAGG+AGG 0.613168 4_2:+8652811 Msa0587180:CDS
AAGATCAATGGACGGAGCGA+GGG 0.613208 4_2:+8654254 Msa0587180:CDS
TGTTTAACTTTGAGCAACGA+TGG 0.613445 4_2:+8653357 Msa0587180:CDS
CGGGAATGAATGTCATGCCA+AGG 0.614171 4_2:-8653305 None:intergenic
AACAACACATCCCAAGCGAT+CGG 0.615121 4_2:-8653338 None:intergenic
GATTTGGAGAAGGCAAGAGT+GGG 0.615789 4_2:+8652261 Msa0587180:CDS
AATCACAAAAGGCGGTCCAA+GGG 0.616469 4_2:+8653280 Msa0587180:CDS
TGGTGGAAATTTCCTCAGCA+TGG 0.616523 4_2:+8651170 Msa0587180:CDS
GAGCAACGATGGAGGAAGCA+AGG 0.617826 4_2:+8653368 Msa0587180:CDS
TGAATTACCTGGTGGAAGGT+CGG 0.619368 4_2:+8653118 Msa0587180:CDS
CGCCATCATCAGGATTGCGG+GGG 0.619690 4_2:-8653025 None:intergenic
TGGAGAAGGCAAGAGTGGGA+AGG 0.621315 4_2:+8652265 Msa0587180:CDS
AGGGAATCGAGGAAGATCCT+CGG 0.622355 4_2:+8653921 Msa0587180:CDS
TCTAGGAGGCCAAAGGCTGG+GGG 0.624607 4_2:+8652825 Msa0587180:CDS
AGCATATGTGCCTGTCGAGG+AGG 0.627896 4_2:+8652422 Msa0587180:CDS
AACAATGGAGATGATGTACA+AGG 0.631124 4_2:+8653874 Msa0587180:CDS
GAACATAGATCATGAAACGT+CGG 0.633210 4_2:-8654054 None:intergenic
TGTTGTCCCAATGTGGCCAG+AGG 0.634138 4_2:+8653802 Msa0587180:CDS
AGTGCAGTGTGACAAAACAA+TGG 0.635050 4_2:-8650631 None:intergenic
GAGGGATTCTAGGAGGCCAA+AGG 0.637811 4_2:+8652818 Msa0587180:CDS
CTTCTGGTGATGAGTAAACA+TGG 0.641961 4_2:-8653078 None:intergenic
CGAGGAGGTCTTGAATGGTG+AGG 0.642464 4_2:+8652437 Msa0587180:CDS
TGAGGAAATTGATAGGTGGG+TGG 0.645001 4_2:+8652455 Msa0587180:CDS
GCATTATGGTATGAGCACCT+TGG 0.646788 4_2:+8654363 Msa0587180:CDS
TGAGCCTCATCGGTGTTGGG+AGG 0.651132 4_2:+8652716 Msa0587180:CDS
AGGAGTCATGAAGCATGCCA+AGG 0.651697 4_2:-8654380 None:intergenic
GTTGTCCCAATGTGGCCAGA+GGG 0.653005 4_2:+8653803 Msa0587180:CDS
AAGAGCATATGTGCCTGTCG+AGG 0.653021 4_2:+8652419 Msa0587180:CDS
AATCGGGAAGTAAAGAAACA+AGG 0.653307 4_2:+8653971 Msa0587180:CDS
TATCATATCTTCCATCACAA+AGG 0.653464 4_2:-8653178 None:intergenic
ATCAACCAAAGATCAATGGA+CGG 0.654662 4_2:+8654246 Msa0587180:CDS
CGTATACTTTCTTCTCACAG+AGG 0.655571 4_2:+8652607 Msa0587180:CDS
AGCGAAGCAAGTGTCCAGGA+AGG 0.657401 4_2:-8654497 None:intergenic
AATAAAACAGTACCATGCTG+AGG 0.661732 4_2:-8651182 None:intergenic
ACAGTGAATTACCTGGTGGA+AGG 0.662406 4_2:+8653114 Msa0587180:CDS
GGGTGTCCCAGAAAGTGCAT+CGG 0.663109 4_2:+8653823 Msa0587180:CDS
CAACGATGGAGGAAGCAAGG+TGG 0.668752 4_2:+8653371 Msa0587180:CDS
AAGAACGTCAAATAATTCCG+AGG 0.670151 4_2:-8653938 None:intergenic
AAGCGATCGGTCCTTCAAGG+CGG 0.671322 4_2:-8653325 None:intergenic
GGTGCTGCAATCACAAAAGG+CGG 0.672665 4_2:+8653272 Msa0587180:CDS
ACTCAGGGCAAAGGGAATCG+AGG 0.672681 4_2:+8653910 Msa0587180:CDS
ATGGTGAGGAAATTGATAGG+TGG 0.675988 4_2:+8652451 Msa0587180:CDS
CCCCGCAATCCTGATGATGG+CGG 0.678364 4_2:+8653026 Msa0587180:CDS
TCTTTACTTCCCGATTACCG+AGG 0.680953 4_2:-8653964 None:intergenic
ATATCCTCCCAACACCGATG+AGG 0.682280 4_2:-8652720 None:intergenic
TGTTTGGGATGATAGAACAT+CGG 0.683265 4_2:+8652911 Msa0587180:CDS
TGTACGTTGTTGTCCCAATG+TGG 0.686098 4_2:+8653795 Msa0587180:CDS
GCTGCAAGACAGCCAGCACG+TGG 0.687862 4_2:+8654318 Msa0587180:CDS
TGTCACGAAAGACCGCAGCT+GGG 0.688731 4_2:+8652548 Msa0587180:CDS
GTTGATAAGCTTAATGCTGG+TGG 0.689428 4_2:+8651147 Msa0587180:CDS
ACCAAGGCTCGGATTCTCGG+CGG 0.691037 4_2:+8654585 Msa0587180:CDS
ATAATGCCATGCGAAAACCA+TGG 0.691651 4_2:-8654347 None:intergenic
CCTAAAATACCACTTTCTGG+TGG 0.698637 4_2:+8652684 Msa0587180:CDS
GTTGTGGACAGTGAATTACC+TGG 0.700680 4_2:+8653107 Msa0587180:CDS
ATCATCCGGAAATGTTACCG+GGG 0.705073 4_2:-8653447 None:intergenic
TTAACTTTGAGCAACGATGG+AGG 0.710551 4_2:+8653360 Msa0587180:CDS
CCTCCTAGAATCCCTCACCA+AGG 0.715713 4_2:-8652811 None:intergenic
GGACTGGCAGAGGAGAACAA+TGG 0.727822 4_2:+8653859 Msa0587180:CDS
AGTACCTTCAAAGAACTGTG+CGG 0.748352 4_2:-8652982 None:intergenic
CTGGTGATGAGTAAACATGG+TGG 0.787330 4_2:-8653075 None:intergenic
GTGGACAGTGAATTACCTGG+TGG 0.811877 4_2:+8653110 Msa0587180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTATTTTTTTAAAATT+CGG - chr4_2:8650992-8651011 None:intergenic 0.0%
!!! ATCAAAAAGTTTTTTTTTTA+TGG + chr4_2:8651028-8651047 Msa0587180:intron 10.0%
!!! ACTGTTTTATTTAATTATTT+TGG + chr4_2:8651194-8651213 Msa0587180:intron 10.0%
!!! ATTTTTAGATTTCATGTTTT+TGG + chr4_2:8651243-8651262 Msa0587180:intron 15.0%
!!! AAAAAAAAAGAATATTTTGG+TGG + chr4_2:8651322-8651341 Msa0587180:intron 15.0%
!! TAAGTATAAGCAAATAAATA+GGG - chr4_2:8652170-8652189 None:intergenic 15.0%
!! ATAAGTATAAGCAAATAAAT+AGG - chr4_2:8652171-8652190 None:intergenic 15.0%
!!! TTTTTAAACAGAGGAAAATA+AGG - chr4_2:8650586-8650605 None:intergenic 20.0%
!!! TTTAATTATTTTGGCCTATT+TGG + chr4_2:8651203-8651222 Msa0587180:intron 20.0%
!! TAATATTGACAATTAACCAA+CGG - chr4_2:8651565-8651584 None:intergenic 20.0%
!! ATGCTTATATTAATGCTATT+CGG + chr4_2:8653606-8653625 Msa0587180:CDS 20.0%
!! AAATTACTGTCATAAATTAC+AGG + chr4_2:8654105-8654124 Msa0587180:intron 20.0%
!! AAATCACAAAAATCTGTATT+TGG - chr4_2:8654791-8654810 None:intergenic 20.0%
! AAAGAGTTAAATCAGATCAA+TGG - chr4_2:8650815-8650834 None:intergenic 25.0%
! TTGAATCATTAGATCCAAAT+AGG - chr4_2:8651220-8651239 None:intergenic 25.0%
!!! AAAAAAGAATATTTTGGTGG+TGG + chr4_2:8651325-8651344 Msa0587180:intron 25.0%
!!! AAAAAGAATATTTTGGTGGT+GGG + chr4_2:8651326-8651345 Msa0587180:intron 25.0%
! AATATTGACAATTAACCAAC+GGG - chr4_2:8651564-8651583 None:intergenic 25.0%
!!! ATATCAGTTTTGTCAAATGT+CGG + chr4_2:8651601-8651620 Msa0587180:intron 25.0%
! GATAAAGTTAATGGTTATTC+AGG - chr4_2:8651879-8651898 None:intergenic 25.0%
! GATGCATAAGATAAAGTTAA+TGG - chr4_2:8651888-8651907 None:intergenic 25.0%
!!! TAATTTGCTTGATTTAGCTT+TGG - chr4_2:8652047-8652066 None:intergenic 25.0%
! TGTTTATACATACATTGACA+TGG + chr4_2:8652081-8652100 Msa0587180:intron 25.0%
! AATAGGGTCATTAATAATGA+AGG - chr4_2:8652154-8652173 None:intergenic 25.0%
!!! ATTTTAGGGATGAAATTATC+CGG - chr4_2:8652672-8652691 None:intergenic 25.0%
! AAACACATGATATACATTAC+CGG + chr4_2:8652765-8652784 Msa0587180:CDS 25.0%
! ATTGAAAATCAGTATTTCCT+TGG + chr4_2:8653650-8653669 Msa0587180:CDS 25.0%
!! TGGTAATGAAAACAAAGATT+AGG - chr4_2:8654698-8654717 None:intergenic 25.0%
!!! TTTGTTTTCATTACCATTTG+TGG + chr4_2:8654702-8654721 Msa0587180:three_prime_UTR 25.0%
!!! AAGTCTCTGTTTTTAAACAG+AGG - chr4_2:8650595-8650614 None:intergenic 30.0%
GGAAGATGAAGAGAATAAAA+GGG - chr4_2:8650683-8650702 None:intergenic 30.0%
AGGAAGATGAAGAGAATAAA+AGG - chr4_2:8650684-8650703 None:intergenic 30.0%
TTCACATTCTCTTCAAAACT+TGG + chr4_2:8650705-8650724 Msa0587180:five_prime_UTR 30.0%
AGTTAAATCAGATCAATGGT+TGG - chr4_2:8650811-8650830 None:intergenic 30.0%
!! GTTTTGTTCTGACTTTAAGT+AGG + chr4_2:8650928-8650947 Msa0587180:intron 30.0%
! TGTGATTTGTAGGTGAAAAA+TGG + chr4_2:8651080-8651099 Msa0587180:intron 30.0%
!!! AAAAGAATATTTTGGTGGTG+GGG + chr4_2:8651327-8651346 Msa0587180:intron 30.0%
AAAGCAAAATCCAATGAGTA+AGG - chr4_2:8651963-8651982 None:intergenic 30.0%
! TTGGATTTTGCTTTCGTTAT+TGG + chr4_2:8651969-8651988 Msa0587180:intron 30.0%
TACATTGCACATACATACAT+AGG + chr4_2:8651998-8652017 Msa0587180:intron 30.0%
!! TGATTTAGCTTTGGTTATTC+AGG - chr4_2:8652038-8652057 None:intergenic 30.0%
AAACGCAAAACTAAAGAAAC+TGG - chr4_2:8652121-8652140 None:intergenic 30.0%
TGCTTATACTTATACAGATC+AGG + chr4_2:8652178-8652197 Msa0587180:intron 30.0%
! GTATATCATGTGTTTTGCAT+TGG - chr4_2:8652760-8652779 None:intergenic 30.0%
TGTTTATACCGAAATTTCCT+TGG + chr4_2:8652794-8652813 Msa0587180:CDS 30.0%
CTAAAGAAAAAGTCTAGTGA+AGG + chr4_2:8652870-8652889 Msa0587180:CDS 30.0%
!!! GAAGAATTGTGAGTTTTGTT+GGG + chr4_2:8653147-8653166 Msa0587180:CDS 30.0%
!!! AAGAATTGTGAGTTTTGTTG+GGG + chr4_2:8653148-8653167 Msa0587180:CDS 30.0%
TATCATATCTTCCATCACAA+AGG - chr4_2:8653181-8653200 None:intergenic 30.0%
!! TAGGTTGATGAAAATCATCA+TGG - chr4_2:8653244-8653263 None:intergenic 30.0%
! TGTTTAGATCTATTGATGGT+GGG + chr4_2:8653492-8653511 Msa0587180:CDS 30.0%
TCTTAAGTGAAAGTTCCTTT+GGG - chr4_2:8653739-8653758 None:intergenic 30.0%
ATCTTAAGTGAAAGTTCCTT+TGG - chr4_2:8653740-8653759 None:intergenic 30.0%
ATTATGAGTAAGATTGAAGC+CGG + chr4_2:8653758-8653777 Msa0587180:CDS 30.0%
AAACTTACCTATCATCATCT+TGG - chr4_2:8654083-8654102 None:intergenic 30.0%
! ATTCTTGATTTTCTGGATGA+AGG - chr4_2:8654407-8654426 None:intergenic 30.0%
AAATCAAGAATGTATCCGTA+AGG + chr4_2:8654416-8654435 Msa0587180:CDS 30.0%
AAAAACCAAACTAAGTAGTG+AGG - chr4_2:8654635-8654654 None:intergenic 30.0%
TTCAAAGTTCAAACCACAAA+TGG - chr4_2:8654718-8654737 None:intergenic 30.0%
GTGACAAAACAATGGATCAT+AGG - chr4_2:8650626-8650645 None:intergenic 35.0%
!!! GTTTTGAAGAGAATGTGAAG+AGG - chr4_2:8650704-8650723 None:intergenic 35.0%
TTGTGTGATCTGATGAGAAA+TGG + chr4_2:8651052-8651071 Msa0587180:intron 35.0%
TGTGTGATCTGATGAGAAAT+GGG + chr4_2:8651053-8651072 Msa0587180:intron 35.0%
ATGGCACAAATTCATCTTCA+TGG + chr4_2:8651099-8651118 Msa0587180:CDS 35.0%
TCTTCATGCTACTATCTATG+AGG + chr4_2:8651125-8651144 Msa0587180:CDS 35.0%
AATAAAACAGTACCATGCTG+AGG - chr4_2:8651185-8651204 None:intergenic 35.0%
CATCTGTTACAAATTAGGCA+TGG - chr4_2:8651662-8651681 None:intergenic 35.0%
! CATGCCTAATTTGTAACAGA+TGG + chr4_2:8651660-8651679 Msa0587180:intron 35.0%
! CCTAATTTGTAACAGATGGT+GGG + chr4_2:8651664-8651683 Msa0587180:intron 35.0%
! CTAATTTGTAACAGATGGTG+GGG + chr4_2:8651665-8651684 Msa0587180:intron 35.0%
! TTTAAGGTGGCTCAAAATGA+CGG + chr4_2:8651697-8651716 Msa0587180:intron 35.0%
CACAAAGTAGTTTCAATCGA+AGG - chr4_2:8651836-8651855 None:intergenic 35.0%
CAAAACATTGAGGAAACTGT+TGG + chr4_2:8652201-8652220 Msa0587180:CDS 35.0%
! ACTCTATGCTACCATTGATT+TGG + chr4_2:8652245-8652264 Msa0587180:CDS 35.0%
ATGAGCATACTAATCCCAAA+TGG + chr4_2:8652304-8652323 Msa0587180:CDS 35.0%
TGAAAAGACTCGTACCATTT+GGG - chr4_2:8652321-8652340 None:intergenic 35.0%
TCACATTTACTGTGCTCATA+TGG + chr4_2:8652338-8652357 Msa0587180:CDS 35.0%
GTGAAAGATGATAATCCTGT+TGG + chr4_2:8652381-8652400 Msa0587180:CDS 35.0%
TGAATGGTGAGGAAATTGAT+AGG + chr4_2:8652448-8652467 Msa0587180:CDS 35.0%
TGAAAAAAACCCGATACAAG+AGG + chr4_2:8652491-8652510 Msa0587180:CDS 35.0%
GAAAAAAACCCGATACAAGA+GGG + chr4_2:8652492-8652511 Msa0587180:CDS 35.0%
CAAAATATTGCAGCTTCACA+TGG - chr4_2:8652527-8652546 None:intergenic 35.0%
! ATTCAAAGCGCTAAATTTCC+TGG + chr4_2:8652579-8652598 Msa0587180:CDS 35.0%
! CTCTGTGAGAAGAAAGTATA+CGG - chr4_2:8652609-8652628 None:intergenic 35.0%
ATCCCTAAAATACCACTTTC+TGG + chr4_2:8652681-8652700 Msa0587180:CDS 35.0%
! CACCAGAAAGTGGTATTTTA+GGG - chr4_2:8652686-8652705 None:intergenic 35.0%
ACATGATATACATTACCGGT+TGG + chr4_2:8652769-8652788 Msa0587180:CDS 35.0%
!! AAAAGTCTAGTGAAGGTGTT+AGG + chr4_2:8652877-8652896 Msa0587180:CDS 35.0%
!! AAAGTCTAGTGAAGGTGTTA+GGG + chr4_2:8652878-8652897 Msa0587180:CDS 35.0%
!! TTAGGGTTTTGATGCTTGTT+TGG + chr4_2:8652895-8652914 Msa0587180:CDS 35.0%
!! TAGGGTTTTGATGCTTGTTT+GGG + chr4_2:8652896-8652915 Msa0587180:CDS 35.0%
! TGTTTGGGATGATAGAACAT+CGG + chr4_2:8652911-8652930 Msa0587180:CDS 35.0%
!! ATCGGTTGGTTTGTTGAAAA+AGG + chr4_2:8652929-8652948 Msa0587180:CDS 35.0%
!! GTTGGTTTGTTGAAAAAGGA+TGG + chr4_2:8652933-8652952 Msa0587180:CDS 35.0%
!! GTTGAAAAAGGATGGATTGA+TGG + chr4_2:8652941-8652960 Msa0587180:CDS 35.0%
!! CGAAGAATTGTGAGTTTTGT+TGG + chr4_2:8653146-8653165 Msa0587180:CDS 35.0%
!!! AGAATTGTGAGTTTTGTTGG+GGG + chr4_2:8653149-8653168 Msa0587180:CDS 35.0%
!! GTTCTAAAAAGTGAGTGGAA+TGG - chr4_2:8653206-8653225 None:intergenic 35.0%
!! CAAGAGTTCTAAAAAGTGAG+TGG - chr4_2:8653211-8653230 None:intergenic 35.0%
TTTCATCAACCTAACTTTCC+AGG + chr4_2:8653251-8653270 Msa0587180:CDS 35.0%
! TGTTTAACTTTGAGCAACGA+TGG + chr4_2:8653357-8653376 Msa0587180:CDS 35.0%
AGGATTTACTTGTCTCTCTA+AGG + chr4_2:8653396-8653415 Msa0587180:CDS 35.0%
GGATTTACTTGTCTCTCTAA+GGG + chr4_2:8653397-8653416 Msa0587180:CDS 35.0%
CAGCTGTTTAGATCTATTGA+TGG + chr4_2:8653488-8653507 Msa0587180:CDS 35.0%
CTGTTTAGATCTATTGATGG+TGG + chr4_2:8653491-8653510 Msa0587180:CDS 35.0%
!! GTTTAGATCTATTGATGGTG+GGG + chr4_2:8653493-8653512 Msa0587180:CDS 35.0%
GATATTAAGCCTGAAGACAT+TGG + chr4_2:8653698-8653717 Msa0587180:CDS 35.0%
TTATGAGTAAGATTGAAGCC+GGG + chr4_2:8653759-8653778 Msa0587180:CDS 35.0%
AACAATGGAGATGATGTACA+AGG + chr4_2:8653874-8653893 Msa0587180:CDS 35.0%
AAGAACGTCAAATAATTCCG+AGG - chr4_2:8653941-8653960 None:intergenic 35.0%
AATCGGGAAGTAAAGAAACA+AGG + chr4_2:8653971-8653990 Msa0587180:CDS 35.0%
AACATAGATCATGAAACGTC+GGG - chr4_2:8654056-8654075 None:intergenic 35.0%
GAACATAGATCATGAAACGT+CGG - chr4_2:8654057-8654076 None:intergenic 35.0%
GTTCATACCAAGATGATGAT+AGG + chr4_2:8654073-8654092 Msa0587180:CDS 35.0%
GATGACGAATACATAATCGT+TGG + chr4_2:8654213-8654232 Msa0587180:CDS 35.0%
! CATTGATCTTTGGTTGATGT+TGG - chr4_2:8654244-8654263 None:intergenic 35.0%
CAACATCAACCAAAGATCAA+TGG + chr4_2:8654242-8654261 Msa0587180:CDS 35.0%
ATCAACCAAAGATCAATGGA+CGG + chr4_2:8654246-8654265 Msa0587180:CDS 35.0%
! TTGATTTTCTGGATGAAGGA+AGG - chr4_2:8654403-8654422 None:intergenic 35.0%
! CGGATACATTCTTGATTTTC+TGG - chr4_2:8654414-8654433 None:intergenic 35.0%
ACCAGATTGCTGACAAATAT+TGG + chr4_2:8654442-8654461 Msa0587180:CDS 35.0%
CCAGATTGCTGACAAATATT+GGG + chr4_2:8654443-8654462 Msa0587180:CDS 35.0%
TTAACTGCTATGACTTTAGC+TGG + chr4_2:8654818-8654837 Msa0587180:three_prime_UTR 35.0%
AGTGCAGTGTGACAAAACAA+TGG - chr4_2:8650634-8650653 None:intergenic 40.0%
! TTGTCACACTGCACTTTTCT+CGG + chr4_2:8650639-8650658 Msa0587180:five_prime_UTR 40.0%
GTGTGATCTGATGAGAAATG+GGG + chr4_2:8651054-8651073 Msa0587180:intron 40.0%
! AATGGGGTTGTGTGATTTGT+AGG + chr4_2:8651070-8651089 Msa0587180:intron 40.0%
!! GAGGTTGATAAGCTTAATGC+TGG + chr4_2:8651144-8651163 Msa0587180:CDS 40.0%
! GTTGATAAGCTTAATGCTGG+TGG + chr4_2:8651147-8651166 Msa0587180:CDS 40.0%
ACAGATCCTAAAAGCAAGCA+GGG - chr4_2:8651375-8651394 None:intergenic 40.0%
TTACAAATTAGGCATGGCAG+TGG - chr4_2:8651656-8651675 None:intergenic 40.0%
! GCCTAATTTGTAACAGATGG+TGG + chr4_2:8651663-8651682 Msa0587180:intron 40.0%
CCCACCATCTGTTACAAATT+AGG - chr4_2:8651667-8651686 None:intergenic 40.0%
! TCAGTGTTATCGATTGCAGA+TGG - chr4_2:8651748-8651767 None:intergenic 40.0%
ACAGATCAGGCAAAACATTG+AGG + chr4_2:8652191-8652210 Msa0587180:intron 40.0%
! ATTGAGGAAACTGTTGGTCT+TGG + chr4_2:8652207-8652226 Msa0587180:CDS 40.0%
!! GAAACTGTTGGTCTTGGAAA+GGG + chr4_2:8652213-8652232 Msa0587180:CDS 40.0%
!! TGCTACCATTGATTTGGAGA+AGG + chr4_2:8652251-8652270 Msa0587180:CDS 40.0%
TCTTGCCTTCTCCAAATCAA+TGG - chr4_2:8652259-8652278 None:intergenic 40.0%
GTGAAAAGACTCGTACCATT+TGG - chr4_2:8652322-8652341 None:intergenic 40.0%
CCTGTTGGAGCAACTTTAAT+CGG + chr4_2:8652396-8652415 Msa0587180:CDS 40.0%
ATGGTGAGGAAATTGATAGG+TGG + chr4_2:8652451-8652470 Msa0587180:CDS 40.0%
TGGTGAGGAAATTGATAGGT+GGG + chr4_2:8652452-8652471 Msa0587180:CDS 40.0%
! TGATAGGTGGGTGGAAATTT+TGG + chr4_2:8652464-8652483 Msa0587180:CDS 40.0%
ATCTTCGAACCCTCTTGTAT+CGG - chr4_2:8652504-8652523 None:intergenic 40.0%
! AAGAAAGTATACGGAACTCC+AGG - chr4_2:8652600-8652619 None:intergenic 40.0%
CGTATACTTTCTTCTCACAG+AGG + chr4_2:8652607-8652626 Msa0587180:CDS 40.0%
ACTTTCTTCTCACAGAGGAA+AGG + chr4_2:8652612-8652631 Msa0587180:CDS 40.0%
TTACCAAGATTCTCATGTGC+CGG + chr4_2:8652650-8652669 Msa0587180:CDS 40.0%
! CCACCAGAAAGTGGTATTTT+AGG - chr4_2:8652687-8652706 None:intergenic 40.0%
CCTAAAATACCACTTTCTGG+TGG + chr4_2:8652684-8652703 Msa0587180:CDS 40.0%
!! CATGTGTTTTGCATTGGTGA+TGG - chr4_2:8652754-8652773 None:intergenic 40.0%
TTCGGTATAAACAGACCAAC+CGG - chr4_2:8652787-8652806 None:intergenic 40.0%
ATACCGAAATTTCCTTGGTG+AGG + chr4_2:8652799-8652818 Msa0587180:CDS 40.0%
TACCGAAATTTCCTTGGTGA+GGG + chr4_2:8652800-8652819 Msa0587180:CDS 40.0%
ATCCCTCACCAAGGAAATTT+CGG - chr4_2:8652805-8652824 None:intergenic 40.0%
AGTACCTTCAAAGAACTGTG+CGG - chr4_2:8652985-8653004 None:intergenic 40.0%
! CTTCTGGTGATGAGTAAACA+TGG - chr4_2:8653081-8653100 None:intergenic 40.0%
TACTCATCACCAGAAGATTG+TGG + chr4_2:8653085-8653104 Msa0587180:CDS 40.0%
TTAACTTTGAGCAACGATGG+AGG + chr4_2:8653360-8653379 Msa0587180:CDS 40.0%
TTCTATTATTCCTCCATCCC+CGG + chr4_2:8653430-8653449 Msa0587180:CDS 40.0%
TGATCATCCGGAAATGTTAC+CGG - chr4_2:8653452-8653471 None:intergenic 40.0%
TATGAGTAAGATTGAAGCCG+GGG + chr4_2:8653760-8653779 Msa0587180:CDS 40.0%
!! TGCATCGGTTCAAGCAATAT+TGG + chr4_2:8653838-8653857 Msa0587180:CDS 40.0%
GATGTACAAGGATATCGTTC+TGG + chr4_2:8653886-8653905 Msa0587180:CDS 40.0%
TATTTGACGTTCTTCTGCCT+CGG + chr4_2:8653947-8653966 Msa0587180:CDS 40.0%
TCGTAATCTGAATCAGGTTC+TGG - chr4_2:8654019-8654038 None:intergenic 40.0%
TGTCTTGCAGCTAAATGGTA+GGG - chr4_2:8654309-8654328 None:intergenic 40.0%
ATAATGCCATGCGAAAACCA+TGG - chr4_2:8654350-8654369 None:intergenic 40.0%
! ATGGTTTTCGCATGGCATTA+TGG + chr4_2:8654349-8654368 Msa0587180:CDS 40.0%
CCCAATATTTGTCAGCAATC+TGG - chr4_2:8654446-8654465 None:intergenic 40.0%
TCGGGGAAAAATTCAAATCC+AGG - chr4_2:8654564-8654583 None:intergenic 40.0%
ACTAAGTAGTGAGGATAGGA+GGG - chr4_2:8654626-8654645 None:intergenic 40.0%
AACTAAGTAGTGAGGATAGG+AGG - chr4_2:8654627-8654646 None:intergenic 40.0%
CCAAACTAAGTAGTGAGGAT+AGG - chr4_2:8654630-8654649 None:intergenic 40.0%
CCTATCCTCACTACTTAGTT+TGG + chr4_2:8654627-8654646 Msa0587180:exon 40.0%
GATAAGCTTAATGCTGGTGG+TGG + chr4_2:8651150-8651169 Msa0587180:CDS 45.0%
TGGTGGAAATTTCCTCAGCA+TGG + chr4_2:8651170-8651189 Msa0587180:CDS 45.0%
GGATCACTGATGCATCAAAG+TGG + chr4_2:8651348-8651367 Msa0587180:intron 45.0%
CACAGATCCTAAAAGCAAGC+AGG - chr4_2:8651376-8651395 None:intergenic 45.0%
AAGTCTCATCACAGATTCGC+TGG - chr4_2:8651470-8651489 None:intergenic 45.0%
! CCAACGGGTTTGCAAATGAT+CGG - chr4_2:8651549-8651568 None:intergenic 45.0%
TGAGCCACCTTAAAACTCCA+TGG - chr4_2:8651691-8651710 None:intergenic 45.0%
!!! GGCTCAAAATGACGGACTTT+TGG + chr4_2:8651705-8651724 Msa0587180:intron 45.0%
! GTGTTATCGATTGCAGATGG+CGG - chr4_2:8651745-8651764 None:intergenic 45.0%
TGCTTCAGCACCTTACTCAT+TGG + chr4_2:8651950-8651969 Msa0587180:intron 45.0%
!! GGAAACTGTTGGTCTTGGAA+AGG + chr4_2:8652212-8652231 Msa0587180:CDS 45.0%
! TGATTTGGAGAAGGCAAGAG+TGG + chr4_2:8652260-8652279 Msa0587180:CDS 45.0%
GATTTGGAGAAGGCAAGAGT+GGG + chr4_2:8652261-8652280 Msa0587180:CDS 45.0%
CCGATTAAAGTTGCTCCAAC+AGG - chr4_2:8652399-8652418 None:intergenic 45.0%
TGAGGAAATTGATAGGTGGG+TGG + chr4_2:8652455-8652474 Msa0587180:CDS 45.0%
TCTTCGAACCCTCTTGTATC+GGG - chr4_2:8652503-8652522 None:intergenic 45.0%
CTCACAGAGGAAAGGATGTA+AGG + chr4_2:8652620-8652639 Msa0587180:CDS 45.0%
TATCCGGCACATGAGAATCT+TGG - chr4_2:8652656-8652675 None:intergenic 45.0%
TAAGTCTTGCCACCAGAAAG+TGG - chr4_2:8652696-8652715 None:intergenic 45.0%
GCAAGACTTATGAGCCTCAT+CGG + chr4_2:8652706-8652725 Msa0587180:CDS 45.0%
! TTATGAGCCTCATCGGTGTT+GGG + chr4_2:8652713-8652732 Msa0587180:CDS 45.0%
TTTCCTTGGTGAGGGATTCT+AGG + chr4_2:8652808-8652827 Msa0587180:CDS 45.0%
TGGGATGATAGAACATCGGT+TGG + chr4_2:8652915-8652934 Msa0587180:CDS 45.0%
GAAACCGCACAGTTCTTTGA+AGG + chr4_2:8652978-8652997 Msa0587180:CDS 45.0%
! CTGGTGATGAGTAAACATGG+TGG - chr4_2:8653078-8653097 None:intergenic 45.0%
TCACCAGAAGATTGTGGTTG+TGG + chr4_2:8653091-8653110 Msa0587180:CDS 45.0%
TGTCCACAACCACAATCTTC+TGG - chr4_2:8653097-8653116 None:intergenic 45.0%
GTTGTGGACAGTGAATTACC+TGG + chr4_2:8653107-8653126 Msa0587180:CDS 45.0%
ACAGTGAATTACCTGGTGGA+AGG + chr4_2:8653114-8653133 Msa0587180:CDS 45.0%
TGAATTACCTGGTGGAAGGT+CGG + chr4_2:8653118-8653137 Msa0587180:CDS 45.0%
ATTGCAGCACCTGGAAAGTT+AGG - chr4_2:8653263-8653282 None:intergenic 45.0%
AATCACAAAAGGCGGTCCAA+GGG + chr4_2:8653280-8653299 Msa0587180:CDS 45.0%
AACAACACATCCCAAGCGAT+CGG - chr4_2:8653341-8653360 None:intergenic 45.0%
ATCATCCGGAAATGTTACCG+GGG - chr4_2:8653450-8653469 None:intergenic 45.0%
GATCATCCGGAAATGTTACC+GGG - chr4_2:8653451-8653470 None:intergenic 45.0%
TTCCATGTCTCGTGATCATC+CGG - chr4_2:8653464-8653483 None:intergenic 45.0%
CAGCATCTTCAGGAGTTTCT+GGG - chr4_2:8653532-8653551 None:intergenic 45.0%
AGCTGGGCTTATTAGTGGAA+AGG + chr4_2:8653556-8653575 Msa0587180:CDS 45.0%
! TCCTTGGAAGCTCTTTTGCT+TGG + chr4_2:8653666-8653685 Msa0587180:CDS 45.0%
TCCAAGCAAAAGAGCTTCCA+AGG - chr4_2:8653670-8653689 None:intergenic 45.0%
! TGCAAAGCACCAATGTCTTC+AGG - chr4_2:8653710-8653729 None:intergenic 45.0%
TGCTTTGCATCTCATCCCAA+AGG + chr4_2:8653721-8653740 Msa0587180:CDS 45.0%
! GTACACAGTGAACTTTTCCC+CGG - chr4_2:8653780-8653799 None:intergenic 45.0%
TGTACGTTGTTGTCCCAATG+TGG + chr4_2:8653795-8653814 Msa0587180:CDS 45.0%
CTTGAACCGATGCACTTTCT+GGG - chr4_2:8653832-8653851 None:intergenic 45.0%
CGGTTCAAGCAATATTGGAC+TGG + chr4_2:8653843-8653862 Msa0587180:CDS 45.0%
!! AAGCAATATTGGACTGGCAG+AGG + chr4_2:8653849-8653868 Msa0587180:CDS 45.0%
TCTTTACTTCCCGATTACCG+AGG - chr4_2:8653967-8653986 None:intergenic 45.0%
! TCAGGTTCTGGTTGTTCAGA+AGG - chr4_2:8654007-8654026 None:intergenic 45.0%
GCTCTCTCGTAATCTGAATC+AGG - chr4_2:8654025-8654044 None:intergenic 45.0%
AGCTAAATGGTAGGGCTGAT+AGG - chr4_2:8654301-8654320 None:intergenic 45.0%
CTGTCTTGCAGCTAAATGGT+AGG - chr4_2:8654310-8654329 None:intergenic 45.0%
! TCAAGTCCATGGTTTTCGCA+TGG + chr4_2:8654341-8654360 Msa0587180:CDS 45.0%
GCATTATGGTATGAGCACCT+TGG + chr4_2:8654363-8654382 Msa0587180:CDS 45.0%
! CAGCAATCTGGTTCACCTTA+CGG - chr4_2:8654434-8654453 None:intergenic 45.0%
CCTTCACTAGCAACTCCAAT+CGG - chr4_2:8654525-8654544 None:intergenic 45.0%
! TGAATTTTTCCCCGACACCA+AGG + chr4_2:8654569-8654588 Msa0587180:CDS 45.0%
!!! TAAAAAAAAAAAGAATATTT+TGG + chr4_2:8651319-8651338 Msa0587180:intron 5.0%
CTTTAAGTAGGCCCCGTTAG+TGG + chr4_2:8650940-8650959 Msa0587180:intron 50.0%
!! AAGCTTAATGCTGGTGGTGG+TGG + chr4_2:8651153-8651172 Msa0587180:CDS 50.0%
!! AGTGGACCCTGCTTGCTTTT+AGG + chr4_2:8651366-8651385 Msa0587180:intron 50.0%
CCGATCATTTGCAAACCCGT+TGG + chr4_2:8651546-8651565 Msa0587180:intron 50.0%
AGTGGCCAAAATATCCGCCA+TGG - chr4_2:8651638-8651657 None:intergenic 50.0%
!!! GGACTTTTGGCTTTCCACCA+TGG + chr4_2:8651718-8651737 Msa0587180:intron 50.0%
! AAGAGCATATGTGCCTGTCG+AGG + chr4_2:8652419-8652438 Msa0587180:CDS 50.0%
CTTATGAGCCTCATCGGTGT+TGG + chr4_2:8652712-8652731 Msa0587180:CDS 50.0%
ATATCCTCCCAACACCGATG+AGG - chr4_2:8652723-8652742 None:intergenic 50.0%
! ATTCTAGGAGGCCAAAGGCT+GGG + chr4_2:8652823-8652842 Msa0587180:CDS 50.0%
TACCGCCATCATCAGGATTG+CGG - chr4_2:8653031-8653050 None:intergenic 50.0%
ATGATGCTACCGCCATCATC+AGG - chr4_2:8653038-8653057 None:intergenic 50.0%
!! TGATGGCGGTAGCATCATTC+AGG + chr4_2:8653040-8653059 Msa0587180:CDS 50.0%
GTGGACAGTGAATTACCTGG+TGG + chr4_2:8653110-8653129 Msa0587180:CDS 50.0%
! CCTTTTGTGATTGCAGCACC+TGG - chr4_2:8653272-8653291 None:intergenic 50.0%
! CCAGGTGCTGCAATCACAAA+AGG + chr4_2:8653269-8653288 Msa0587180:CDS 50.0%
! GGTGCTGCAATCACAAAAGG+CGG + chr4_2:8653272-8653291 Msa0587180:CDS 50.0%
CAATCACAAAAGGCGGTCCA+AGG + chr4_2:8653279-8653298 Msa0587180:CDS 50.0%
ATGTCATGCCAAGGTTCCCT+TGG - chr4_2:8653299-8653318 None:intergenic 50.0%
CGGGAATGAATGTCATGCCA+AGG - chr4_2:8653308-8653327 None:intergenic 50.0%
GACATTCATTCCCGCCTTGA+AGG + chr4_2:8653314-8653333 Msa0587180:CDS 50.0%
AACGATGGAGGAAGCAAGGT+GGG + chr4_2:8653372-8653391 Msa0587180:CDS 50.0%
TCCATCCCCGGTAACATTTC+CGG + chr4_2:8653442-8653461 Msa0587180:CDS 50.0%
TTCCGGATGATCACGAGACA+TGG + chr4_2:8653459-8653478 Msa0587180:CDS 50.0%
!!! ATTGATGGTGGGGCTGCTTT+TGG + chr4_2:8653503-8653522 Msa0587180:CDS 50.0%
!!! TTGATGGTGGGGCTGCTTTT+GGG + chr4_2:8653504-8653523 Msa0587180:CDS 50.0%
GCAGCATCTTCAGGAGTTTC+TGG - chr4_2:8653533-8653552 None:intergenic 50.0%
! GGAAGCTCTTTTGCTTGGAG+TGG + chr4_2:8653671-8653690 Msa0587180:CDS 50.0%
! CTCTTTTGCTTGGAGTGGTG+AGG + chr4_2:8653676-8653695 Msa0587180:CDS 50.0%
GCTTGAACCGATGCACTTTC+TGG - chr4_2:8653833-8653852 None:intergenic 50.0%
AGGATATCGTTCTGGCACTC+AGG + chr4_2:8653894-8653913 Msa0587180:CDS 50.0%
GGATATCGTTCTGGCACTCA+GGG + chr4_2:8653895-8653914 Msa0587180:CDS 50.0%
AGGGAATCGAGGAAGATCCT+CGG + chr4_2:8653921-8653940 Msa0587180:CDS 50.0%
CGTTCTTCTGCCTCGGTAAT+CGG + chr4_2:8653954-8653973 Msa0587180:CDS 50.0%
GTTCTTCTGCCTCGGTAATC+GGG + chr4_2:8653955-8653974 Msa0587180:CDS 50.0%
CATGAAACGTCGGGACTGTT+GGG - chr4_2:8654047-8654066 None:intergenic 50.0%
TCATGAAACGTCGGGACTGT+TGG - chr4_2:8654048-8654067 None:intergenic 50.0%
TCGCTCCGTCCATTGATCTT+TGG - chr4_2:8654254-8654273 None:intergenic 50.0%
AAAGATCAATGGACGGAGCG+AGG + chr4_2:8654253-8654272 Msa0587180:CDS 50.0%
AAGATCAATGGACGGAGCGA+GGG + chr4_2:8654254-8654273 Msa0587180:CDS 50.0%
!! AGGGACTCTGAGATAGCGAT+GGG + chr4_2:8654273-8654292 Msa0587180:CDS 50.0%
CTGGCTGTCTTGCAGCTAAA+TGG - chr4_2:8654314-8654333 None:intergenic 50.0%
AGGAGTCATGAAGCATGCCA+AGG - chr4_2:8654383-8654402 None:intergenic 50.0%
CACTTGCTTCGCTATCCGAT+TGG + chr4_2:8654507-8654526 Msa0587180:CDS 50.0%
CCGATTGGAGTTGCTAGTGA+AGG + chr4_2:8654522-8654541 Msa0587180:CDS 50.0%
AAGTAGTGAGGATAGGAGGG+AGG - chr4_2:8654623-8654642 None:intergenic 50.0%
AAGTAGGCCCCGTTAGTGGA+CGG + chr4_2:8650944-8650963 Msa0587180:intron 55.0%
!!! CAGCGCCATGGCGGATATTT+TGG + chr4_2:8651630-8651649 Msa0587180:intron 55.0%
!! TGTAACAGATGGTGGGGCCA+TGG + chr4_2:8651671-8651690 Msa0587180:intron 55.0%
! GGTGGGGCCATGGAGTTTTA+AGG + chr4_2:8651681-8651700 Msa0587180:intron 55.0%
!!! GGGGCCATGGAGTTTTAAGG+TGG + chr4_2:8651684-8651703 Msa0587180:intron 55.0%
TGGAGAAGGCAAGAGTGGGA+AGG + chr4_2:8652265-8652284 Msa0587180:CDS 55.0%
AGCATATGTGCCTGTCGAGG+AGG + chr4_2:8652422-8652441 Msa0587180:CDS 55.0%
CCATTCAAGACCTCCTCGAC+AGG - chr4_2:8652435-8652454 None:intergenic 55.0%
CCTGTCGAGGAGGTCTTGAA+TGG + chr4_2:8652432-8652451 Msa0587180:CDS 55.0%
CGAGGAGGTCTTGAATGGTG+AGG + chr4_2:8652437-8652456 Msa0587180:CDS 55.0%
ATGTCACGAAAGACCGCAGC+TGG + chr4_2:8652547-8652566 Msa0587180:CDS 55.0%
TGTCACGAAAGACCGCAGCT+GGG + chr4_2:8652548-8652567 Msa0587180:CDS 55.0%
CCTCCTAGAATCCCTCACCA+AGG - chr4_2:8652814-8652833 None:intergenic 55.0%
CCTTGGTGAGGGATTCTAGG+AGG + chr4_2:8652811-8652830 Msa0587180:CDS 55.0%
! GAGGGATTCTAGGAGGCCAA+AGG + chr4_2:8652818-8652837 Msa0587180:CDS 55.0%
! GATTCTAGGAGGCCAAAGGC+TGG + chr4_2:8652822-8652841 Msa0587180:CDS 55.0%
! TTCTAGGAGGCCAAAGGCTG+GGG + chr4_2:8652824-8652843 Msa0587180:CDS 55.0%
GCTGGGGGAGACACAACAAT+TGG + chr4_2:8652840-8652859 Msa0587180:CDS 55.0%
ACCGCCATCATCAGGATTGC+GGG - chr4_2:8653030-8653049 None:intergenic 55.0%
AAGCGATCGGTCCTTCAAGG+CGG - chr4_2:8653328-8653347 None:intergenic 55.0%
CCTTGAAGGACCGATCGCTT+GGG + chr4_2:8653328-8653347 Msa0587180:CDS 55.0%
GAGCAACGATGGAGGAAGCA+AGG + chr4_2:8653368-8653387 Msa0587180:CDS 55.0%
CAACGATGGAGGAAGCAAGG+TGG + chr4_2:8653371-8653390 Msa0587180:CDS 55.0%
ATGGAGGAAGCAAGGTGGGA+AGG + chr4_2:8653376-8653395 Msa0587180:CDS 55.0%
GGAAATGTTACCGGGGATGG+AGG - chr4_2:8653443-8653462 None:intergenic 55.0%
TCCGGAAATGTTACCGGGGA+TGG - chr4_2:8653446-8653465 None:intergenic 55.0%
CTGAAGATGCTGCGAGAGCT+GGG + chr4_2:8653540-8653559 Msa0587180:CDS 55.0%
GCGAGAGCTGGGCTTATTAG+TGG + chr4_2:8653551-8653570 Msa0587180:CDS 55.0%
TGTTGTCCCAATGTGGCCAG+AGG + chr4_2:8653802-8653821 Msa0587180:CDS 55.0%
GTTGTCCCAATGTGGCCAGA+GGG + chr4_2:8653803-8653822 Msa0587180:CDS 55.0%
! GGGTGTCCCAGAAAGTGCAT+CGG + chr4_2:8653823-8653842 Msa0587180:CDS 55.0%
! GGACTGGCAGAGGAGAACAA+TGG + chr4_2:8653859-8653878 Msa0587180:CDS 55.0%
GTTCTGGCACTCAGGGCAAA+GGG + chr4_2:8653902-8653921 Msa0587180:CDS 55.0%
ACTCAGGGCAAAGGGAATCG+AGG + chr4_2:8653910-8653929 Msa0587180:CDS 55.0%
!! GAGGGACTCTGAGATAGCGA+TGG + chr4_2:8654272-8654291 Msa0587180:CDS 55.0%
TCACTTGAGCACGACCTTCC+TGG + chr4_2:8654483-8654502 Msa0587180:CDS 55.0%
AGCGAAGCAAGTGTCCAGGA+AGG - chr4_2:8654500-8654519 None:intergenic 55.0%
GGATAGCGAAGCAAGTGTCC+AGG - chr4_2:8654504-8654523 None:intergenic 55.0%
! TTTTCCCCGACACCAAGGCT+CGG + chr4_2:8654574-8654593 Msa0587180:CDS 55.0%
!! AGAATCCGAGCCTTGGTGTC+GGG - chr4_2:8654582-8654601 None:intergenic 55.0%
! GAGAATCCGAGCCTTGGTGT+CGG - chr4_2:8654583-8654602 None:intergenic 55.0%
GACACCAAGGCTCGGATTCT+CGG + chr4_2:8654582-8654601 Msa0587180:CDS 55.0%
TCAACCCCGCCGTCCACTAA+CGG - chr4_2:8650956-8650975 None:intergenic 60.0%
TATCCGCCATGGCGCTGCTA+TGG - chr4_2:8651627-8651646 None:intergenic 60.0%
!! TTGCAGATGGCGGACCATGG+TGG - chr4_2:8651735-8651754 None:intergenic 60.0%
!! CGATTGCAGATGGCGGACCA+TGG - chr4_2:8651738-8651757 None:intergenic 60.0%
!! TGAGCCTCATCGGTGTTGGG+AGG + chr4_2:8652716-8652735 Msa0587180:CDS 60.0%
TCTAGGAGGCCAAAGGCTGG+GGG + chr4_2:8652825-8652844 Msa0587180:CDS 60.0%
GTTGTGTCTCCCCCAGCCTT+TGG - chr4_2:8652837-8652856 None:intergenic 60.0%
TGCCCCCGCAATCCTGATGA+TGG + chr4_2:8653023-8653042 Msa0587180:CDS 60.0%
CGCCATCATCAGGATTGCGG+GGG - chr4_2:8653028-8653047 None:intergenic 60.0%
CCGCCATCATCAGGATTGCG+GGG - chr4_2:8653029-8653048 None:intergenic 60.0%
!! CCCCGCAATCCTGATGATGG+CGG + chr4_2:8653026-8653045 Msa0587180:CDS 60.0%
CGCTTATCCGACCTTCCACC+AGG - chr4_2:8653128-8653147 None:intergenic 60.0%
GGGGGTCTCGACCTTTGTGA+TGG + chr4_2:8653167-8653186 Msa0587180:CDS 60.0%
AAGGCGGTCCAAGGGAACCT+TGG + chr4_2:8653288-8653307 Msa0587180:CDS 60.0%
AGCGATCGGTCCTTCAAGGC+GGG - chr4_2:8653327-8653346 None:intergenic 60.0%
GCCTTGAAGGACCGATCGCT+TGG + chr4_2:8653327-8653346 Msa0587180:CDS 60.0%
CCCAAGCGATCGGTCCTTCA+AGG - chr4_2:8653331-8653350 None:intergenic 60.0%
CCAGCTCTCGCAGCATCTTC+AGG - chr4_2:8653542-8653561 None:intergenic 60.0%
CCTGAAGATGCTGCGAGAGC+TGG + chr4_2:8653539-8653558 Msa0587180:CDS 60.0%
GGACACCCTCTGGCCACATT+GGG - chr4_2:8653811-8653830 None:intergenic 60.0%
!! GCACTTTCTGGGACACCCTC+TGG - chr4_2:8653821-8653840 None:intergenic 60.0%
CGTTCTGGCACTCAGGGCAA+AGG + chr4_2:8653901-8653920 Msa0587180:CDS 60.0%
CCATGGACTTGACCACGTGC+TGG - chr4_2:8654333-8654352 None:intergenic 60.0%
CCAGCACGTGGTCAAGTCCA+TGG + chr4_2:8654330-8654349 Msa0587180:CDS 60.0%
GGAGATGTCACACAGCTGCC+TGG + chr4_2:8654543-8654562 Msa0587180:CDS 60.0%
!! GAATCCGAGCCTTGGTGTCG+GGG - chr4_2:8654581-8654600 None:intergenic 60.0%
ACCAAGGCTCGGATTCTCGG+CGG + chr4_2:8654585-8654604 Msa0587180:CDS 60.0%
! TAGGCCCCGTTAGTGGACGG+CGG + chr4_2:8650947-8650966 Msa0587180:intron 65.0%
AACCCCGCCGTCCACTAACG+GGG - chr4_2:8650954-8650973 None:intergenic 65.0%
CAACCCCGCCGTCCACTAAC+GGG - chr4_2:8650955-8650974 None:intergenic 65.0%
! AGTGGACGGCGGGGTTGATC+AGG + chr4_2:8650958-8650977 Msa0587180:intron 65.0%
! GTGGACGGCGGGGTTGATCA+GGG + chr4_2:8650959-8650978 Msa0587180:intron 65.0%
! ACGGCGGGGTTGATCAGGGT+TGG + chr4_2:8650963-8650982 Msa0587180:intron 65.0%
TGTCGGCCATAGCAGCGCCA+TGG + chr4_2:8651618-8651637 Msa0587180:intron 65.0%
AAAGACCGCAGCTGGGCTCG+AGG + chr4_2:8652555-8652574 Msa0587180:CDS 65.0%
GAATGCCTCGAGCCCAGCTG+CGG - chr4_2:8652563-8652582 None:intergenic 65.0%
GGGACACCCTCTGGCCACAT+TGG - chr4_2:8653812-8653831 None:intergenic 65.0%
GCTGCAAGACAGCCAGCACG+TGG + chr4_2:8654318-8654337 Msa0587180:CDS 65.0%
! AGGCCCCGTTAGTGGACGGC+GGG + chr4_2:8650948-8650967 Msa0587180:intron 70.0%
CGGCCATAGCAGCGCCATGG+CGG + chr4_2:8651621-8651640 Msa0587180:intron 70.0%
GCCGCCGAGAATCCGAGCCT+TGG - chr4_2:8654589-8654608 None:intergenic 70.0%
! GGCCCCGTTAGTGGACGGCG+GGG + chr4_2:8650949-8650968 Msa0587180:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 8650570 8654863 8650570 ID=Msa0587180;Name=Msa0587180
chr4_2 mRNA 8650570 8654863 8650570 ID=Msa0587180-mRNA-1;Parent=Msa0587180;Name=Msa0587180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=164|1|0.75|1|0.66|0.5|4|219|808
chr4_2 exon 8650570 8650726 8650570 ID=Msa0587180-mRNA-1:exon:2350;Parent=Msa0587180-mRNA-1
chr4_2 exon 8651092 8651191 8651092 ID=Msa0587180-mRNA-1:exon:2351;Parent=Msa0587180-mRNA-1
chr4_2 exon 8652195 8654094 8652195 ID=Msa0587180-mRNA-1:exon:2352;Parent=Msa0587180-mRNA-1
chr4_2 exon 8654211 8654863 8654211 ID=Msa0587180-mRNA-1:exon:2353;Parent=Msa0587180-mRNA-1
chr4_2 five_prime_UTR 8650570 8650726 8650570 ID=Msa0587180-mRNA-1:five_prime_utr;Parent=Msa0587180-mRNA-1
chr4_2 five_prime_UTR 8651092 8651098 8651092 ID=Msa0587180-mRNA-1:five_prime_utr;Parent=Msa0587180-mRNA-1
chr4_2 CDS 8651099 8651191 8651099 ID=Msa0587180-mRNA-1:cds;Parent=Msa0587180-mRNA-1
chr4_2 CDS 8652195 8654094 8652195 ID=Msa0587180-mRNA-1:cds;Parent=Msa0587180-mRNA-1
chr4_2 CDS 8654211 8654644 8654211 ID=Msa0587180-mRNA-1:cds;Parent=Msa0587180-mRNA-1
chr4_2 three_prime_UTR 8654645 8654863 8654645 ID=Msa0587180-mRNA-1:three_prime_utr;Parent=Msa0587180-mRNA-1
Gene Sequence

>Msa0587180

ATGGCACAAATTCATCTTCATGGTACTCTTCATGCTACTATCTATGAGGTTGATAAGCTTAATGCTGGTGGTGGTGGAAATTTCCTCAGCATGATCAGGCAAAACATTGAGGAAACTGTTGGTCTTGGAAAGGGAGTTACTAAACTCTATGCTACCATTGATTTGGAGAAGGCAAGAGTGGGAAGGACAAGAATTATTGAAAATGAGCATACTAATCCCAAATGGTACGAGTCTTTTCACATTTACTGTGCTCATATGGCTTCAGATATCATATTCACTGTGAAAGATGATAATCCTGTTGGAGCAACTTTAATCGGAAGAGCATATGTGCCTGTCGAGGAGGTCTTGAATGGTGAGGAAATTGATAGGTGGGTGGAAATTTTGGACACTGAAAAAAACCCGATACAAGAGGGTTCGAAGATCCATGTGAAGCTGCAATATTTTGATGTCACGAAAGACCGCAGCTGGGCTCGAGGCATTCAAAGCGCTAAATTTCCTGGAGTTCCGTATACTTTCTTCTCACAGAGGAAAGGATGTAAGGTATCTCTTTACCAAGATTCTCATGTGCCGGATAATTTCATCCCTAAAATACCACTTTCTGGTGGCAAGACTTATGAGCCTCATCGGTGTTGGGAGGATATTTATGATGCCATCACCAATGCAAAACACATGATATACATTACCGGTTGGTCTGTTTATACCGAAATTTCCTTGGTGAGGGATTCTAGGAGGCCAAAGGCTGGGGGAGACACAACAATTGGTGAGCTTCTAAAGAAAAAGTCTAGTGAAGGTGTTAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCGGTTGGTTTGTTGAAAAAGGATGGATTGATGGCTACTCATGACGAAGAAACCGCACAGTTCTTTGAAGGTACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGATGATGGCGGTAGCATCATTCAGGATTTACAAGTTTCCACCATGTTTACTCATCACCAGAAGATTGTGGTTGTGGACAGTGAATTACCTGGTGGAAGGTCGGATAAGCGAAGAATTGTGAGTTTTGTTGGGGGTCTCGACCTTTGTGATGGAAGATATGATACTCCATTCCACTCACTTTTTAGAACTCTTGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCAGGTGCTGCAATCACAAAAGGCGGTCCAAGGGAACCTTGGCATGACATTCATTCCCGCCTTGAAGGACCGATCGCTTGGGATGTGTTGTTTAACTTTGAGCAACGATGGAGGAAGCAAGGTGGGAAGGATTTACTTGTCTCTCTAAGGGAGCTTGAAGATTCTATTATTCCTCCATCCCCGGTAACATTTCCGGATGATCACGAGACATGGAATGTTCAGCTGTTTAGATCTATTGATGGTGGGGCTGCTTTTGGGTTCCCAGAAACTCCTGAAGATGCTGCGAGAGCTGGGCTTATTAGTGGAAAGGATAATATCATCGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGGCGTGCAAAAAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCTTGGAGTGGTGAGGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTCATCCCAAAGGAACTTTCACTTAAGATTATGAGTAAGATTGAAGCCGGGGAAAAGTTCACTGTGTACGTTGTTGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCGGTTCAAGCAATATTGGACTGGCAGAGGAGAACAATGGAGATGATGTACAAGGATATCGTTCTGGCACTCAGGGCAAAGGGAATCGAGGAAGATCCTCGGAATTATTTGACGTTCTTCTGCCTCGGTAATCGGGAAGTAAAGAAACAAGGAGAGTACGAGCCTTCTGAACAACCAGAACCTGATTCAGATTACGAGAGAGCCCAACAGTCCCGACGTTTCATGATCTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCGTTGGATCTGCCAACATCAACCAAAGATCAATGGACGGAGCGAGGGACTCTGAGATAGCGATGGGAGCCTATCAGCCCTACCATTTAGCTGCAAGACAGCCAGCACGTGGTCAAGTCCATGGTTTTCGCATGGCATTATGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTTCATCCAGAAAATCAAGAATGTATCCGTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTCTATTCAAATGATTCACTTGAGCACGACCTTCCTGGACACTTGCTTCGCTATCCGATTGGAGTTGCTAGTGAAGGAGATGTCACACAGCTGCCTGGATTTGAATTTTTCCCCGACACCAAGGCTCGGATTCTCGGCGGCAAAGCTGATTACCTCCCTCCTATCCTCACTACTTAG
Protein sequence

>Msa0587180

MAQIHLHGTLHATIYEVDKLNAGGGGNFLSMIRQNIEETVGLGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWYESFHIYCAHMASDIIFTVKDDNPVGATLIGRAYVPVEEVLNGEEIDRWVEILDTEKNPIQEGSKIHVKLQYFDVTKDRSWARGIQSAKFPGVPYTFFSQRKGCKVSLYQDSHVPDNFIPKIPLSGGKTYEPHRCWEDIYDAITNAKHMIYITGWSVYTEISLVRDSRRPKAGGDTTIGELLKKKSSEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTDVHCVLCPRNPDDGGSIIQDLQVSTMFTHHQKIVVVDSELPGGRSDKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDSIIPPSPVTFPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSGEDIKPEDIGALHLIPKELSLKIMSKIEAGEKFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIVLALRAKGIEEDPRNYLTFFCLGNREVKKQGEYEPSEQPEPDSDYERAQQSRRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLAARQPARGQVHGFRMALWYEHLGMLHDSFLHPENQECIRKVNQIADKYWDLYSNDSLEHDLPGHLLRYPIGVASEGDVTQLPGFEFFPDTKARILGGKADYLPPILTT*