AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0530660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530660 MtrunA17_Chr4g0003411 98.762 808 10 0 1 808 1 808 0.0 1665
Msa0530660 MtrunA17_Chr2g0333021 85.167 809 119 1 1 808 1 809 0.0 1452
Msa0530660 MtrunA17_Chr3g0137821 64.140 831 266 11 1 808 1 822 0.0 1082
Msa0530660 MtrunA17_Chr3g0137791 63.341 832 266 10 6 808 5 826 0.0 1070
Msa0530660 MtrunA17_Chr7g0246481 46.303 825 389 17 6 796 299 1103 0.0 726
Msa0530660 MtrunA17_Chr8g0350951 47.296 795 381 15 26 796 258 1038 0.0 721
Msa0530660 MtrunA17_Chr5g0398161 47.594 769 366 14 50 796 90 843 0.0 719
Msa0530660 MtrunA17_Chr5g0398171 45.421 819 400 17 6 796 38 837 0.0 711
Msa0530660 MtrunA17_Chr5g0406161 45.963 805 371 14 50 808 86 872 0.0 706
Msa0530660 MtrunA17_Chr8g0380631 47.177 797 364 17 50 808 72 849 0.0 699
Msa0530660 MtrunA17_Chr3g0143471 45.936 812 368 20 50 808 73 866 0.0 682
Msa0530660 MtrunA17_Chr2g0330431 42.222 810 403 19 6 808 5 756 0.0 613
Msa0530660 MtrunA17_Chr8g0341931 41.430 811 402 20 6 808 8 753 0.0 590
Msa0530660 MtrunA17_Chr5g0406151 54.930 71 29 1 320 390 12 79 2.24e-22 92.0
Msa0530660 MtrunA17_Chr1g0192401 32.636 239 124 10 497 725 733 944 4.70e-21 99.4
Msa0530660 MtrunA17_Chr1g0192401 29.825 228 118 10 211 426 362 559 7.85e-16 82.4
Msa0530660 MtrunA17_Chr2g0295411 30.924 249 132 9 456 692 736 956 2.37e-18 90.5
Msa0530660 MtrunA17_Chr2g0295411 27.039 233 119 8 211 426 388 586 7.77e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530660 AT3G15730.1 81.728 810 146 2 1 808 1 810 0.0 1420
Msa0530660 AT1G52570.1 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0530660 AT1G52570.3 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0530660 AT1G52570.2 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0530660 AT5G25370.1 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0530660 AT5G25370.3 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0530660 AT5G25370.2 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0530660 AT5G25370.4 64.334 743 257 6 72 808 5 745 0.0 1000
Msa0530660 AT2G42010.1 45.510 824 394 17 6 796 271 1072 0.0 729
Msa0530660 AT2G42010.2 44.444 846 396 17 6 796 271 1097 0.0 723
Msa0530660 AT4G00240.3 46.545 767 377 13 50 796 11 764 0.0 715
Msa0530660 AT4G11840.1 45.157 826 404 15 6 796 44 855 0.0 714
Msa0530660 AT4G00240.1 45.512 791 393 14 26 796 144 916 0.0 714
Msa0530660 AT4G00240.2 46.545 767 377 13 50 796 128 881 0.0 714
Msa0530660 AT4G11830.2 44.928 828 403 15 6 796 34 845 0.0 714
Msa0530660 AT4G11830.1 46.323 775 372 13 50 796 55 813 0.0 712
Msa0530660 AT4G11850.1 45.200 823 404 16 6 796 40 847 0.0 703
Msa0530660 AT4G11840.2 44.606 825 380 15 6 796 44 825 0.0 693
Msa0530660 AT4G35790.2 46.491 798 368 17 50 808 80 857 0.0 677
Msa0530660 AT4G35790.1 46.106 809 366 18 50 808 80 868 0.0 670
Msa0530660 AT1G55180.2 40.678 767 402 17 50 808 19 740 0.0 586
Msa0530660 AT1G55180.1 39.286 812 427 18 5 808 9 762 0.0 585
Msa0530660 AT4G35790.3 46.242 612 282 12 50 626 80 679 1.09e-173 517
Msa0530660 AT4G11830.4 43.669 616 307 11 6 596 34 634 2.99e-169 503
Msa0530660 AT4G11830.3 43.907 599 296 11 6 579 34 617 9.30e-165 492
Msa0530660 AT3G05630.1 30.932 236 126 8 499 724 714 922 3.56e-20 96.7
Msa0530660 AT3G05630.1 27.329 322 155 14 131 426 304 572 3.07e-15 80.9
Msa0530660 AT3G16785.6 32.283 254 122 11 456 692 710 930 3.48e-19 93.6
Msa0530660 AT3G16785.6 30.942 223 104 9 220 426 389 577 1.26e-15 82.0
Msa0530660 AT3G16785.5 32.283 254 122 11 456 692 710 930 3.48e-19 93.6
Msa0530660 AT3G16785.5 30.942 223 104 9 220 426 389 577 1.26e-15 82.0
Msa0530660 AT3G16785.4 32.283 254 122 11 456 692 710 930 3.84e-19 93.6
Msa0530660 AT3G16785.4 30.942 223 104 9 220 426 389 577 1.24e-15 82.0
Msa0530660 AT3G16785.1 32.283 254 122 11 456 692 710 930 3.86e-19 93.6
Msa0530660 AT3G16785.1 30.942 223 104 9 220 426 389 577 1.30e-15 82.0
Msa0530660 AT3G16785.3 32.283 254 122 11 456 692 710 930 3.87e-19 93.6
Msa0530660 AT3G16785.3 30.942 223 104 9 220 426 389 577 1.18e-15 82.0
Msa0530660 AT3G16785.2 32.283 254 122 11 456 692 710 930 3.87e-19 93.6
Msa0530660 AT3G16785.2 30.942 223 104 9 220 426 389 577 1.18e-15 82.0

Find 241 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGGTGGGTGGAAATTT+TGG 0.132980 4_1:-4717538 Msa0530660:CDS
GCTTGAACCGATGCACTTTC+TGG 0.151448 4_1:+4716172 None:intergenic
ATTGATGGTGGGGCTGCTTT+TGG 0.174765 4_1:-4716499 Msa0530660:CDS
GCAGCATCTTCAGGAGTTTC+TGG 0.186898 4_1:+4716472 None:intergenic
ATCGGTTGGTTTGTTGAAAA+AGG 0.188851 4_1:-4717073 Msa0530660:CDS
CGTTCTTCTGCCTCGGTAAT+CGG 0.218124 4_1:-4716048 Msa0530660:CDS
TCCATCCCCGGTAACATTTC+CGG 0.219913 4_1:-4716560 Msa0530660:CDS
ATCCCTAAAATACCACTTTC+TGG 0.238358 4_1:-4717321 Msa0530660:CDS
TCGCTCCGTCCATTGATCTT+TGG 0.259842 4_1:+4715751 None:intergenic
TTTCCTTGGTGAGGGATTCT+AGG 0.266899 4_1:-4717194 Msa0530660:CDS
AGGAAGATGAAGAGAATAAA+AGG 0.275649 4_1:+4719323 None:intergenic
ACCAGATTGCTGACAAATAT+TGG 0.280067 4_1:-4715560 Msa0530660:CDS
CCTATCCTCACTACTTAGTT+TGG 0.297118 4_1:-4715375 Msa0530660:exon
CCAGCTCTCGCAGCATCTTC+AGG 0.308289 4_1:+4716463 None:intergenic
AAAAGTCTAGTGAAGGTGTT+AGG 0.315711 4_1:-4717125 Msa0530660:CDS
ACTCTATGCTACCATTGATT+TGG 0.326580 4_1:-4717757 Msa0530660:CDS
ACCGCCATCATCAGGATTGC+GGG 0.327108 4_1:+4716975 None:intergenic
CCTGTTGGAGCAACTTTAAT+CGG 0.329996 4_1:-4717606 Msa0530660:CDS
TCACTTGAGCACGACCTTCC+TGG 0.343592 4_1:-4715519 Msa0530660:CDS
TTGTCACACTGCACTCTTCT+CGG 0.347204 4_1:-4719368 Msa0530660:five_prime_UTR
GTGAAAAGACTCGTACCATT+TGG 0.347746 4_1:+4717683 None:intergenic
ATCTTAAGTGAAAGTTCCTT+TGG 0.350014 4_1:+4716265 None:intergenic
CCCAATATTTGTCAGCAATC+TGG 0.350230 4_1:+4715559 None:intergenic
ATCCCTCACCAAGGAAATTT+CGG 0.354270 4_1:+4717200 None:intergenic
TTTCATCAACCTAACTTTCC+AGG 0.354896 4_1:-4716751 Msa0530660:CDS
GACACCAAGGCTCGGATTCT+CGG 0.360309 4_1:-4715420 Msa0530660:CDS
TGCATCGGTTCAAGCAATAT+TGG 0.369787 4_1:-4716164 Msa0530660:CDS
CTCTGTGAGAAGAAAGTATA+CGG 0.369951 4_1:+4717396 None:intergenic
AACAATGGAGATGATGTATA+AGG 0.370041 4_1:-4716128 Msa0530660:CDS
TCACATTTACTGTGCTCATA+TGG 0.370819 4_1:-4717664 Msa0530660:CDS
GGCACACCCTCTGGCCACAT+TGG 0.375949 4_1:+4716193 None:intergenic
TGAAAAGACTCGTACCATTT+GGG 0.379443 4_1:+4717684 None:intergenic
ATGCTTATATTAATGCTATT+CGG 0.380918 4_1:-4716396 Msa0530660:CDS
CCGATTAAAGTTGCTCCAAC+AGG 0.380987 4_1:+4717606 None:intergenic
TCGTAATCTGAATCAGGTTC+TGG 0.383287 4_1:+4715986 None:intergenic
TTCTAGGAGGCCAAAGGCTG+GGG 0.387473 4_1:-4717178 Msa0530660:CDS
GCCTTGAAGGACCGATCGCT+TGG 0.387667 4_1:-4716675 Msa0530660:CDS
CTGGCTGTCTTGCAGCTAAA+TGG 0.393197 4_1:+4715691 None:intergenic
ATTGAGGAAACTGTTGGTCT+TGG 0.395386 4_1:-4717795 Msa0530660:CDS
TGTCCACAACCACAATCTTC+TGG 0.398916 4_1:+4716908 None:intergenic
ATGTCACGAAAGACCGCAGC+TGG 0.399882 4_1:-4717455 Msa0530660:CDS
AGAATCCGAGCCTTGGTGTC+GGG 0.406985 4_1:+4715423 None:intergenic
GTTCTTCTGCCTCGGTAATC+GGG 0.408625 4_1:-4716047 Msa0530660:CDS
CAGCATCTTCAGGAGTTTCT+GGG 0.410189 4_1:+4716473 None:intergenic
TGCAAAGCACCAATGTCTTC+AGG 0.412451 4_1:+4716295 None:intergenic
ATTGCAGCACCTGGAAAGTT+AGG 0.413190 4_1:+4716742 None:intergenic
AAACTTACCTATCATCATCT+TGG 0.413744 4_1:+4715922 None:intergenic
TGATGGCGGTAGCATCATTC+AGG 0.414188 4_1:-4716962 Msa0530660:CDS
CCTGAAGATGCTGCGAGAGC+TGG 0.415758 4_1:-4716463 Msa0530660:CDS
ATTCAAAGCGCTAAATTTCC+TGG 0.415896 4_1:-4717423 Msa0530660:CDS
GATGTATAAGGATATCGTTC+TGG 0.416806 4_1:-4716116 Msa0530660:CDS
GCACACCCTCTGGCCACATT+GGG 0.418035 4_1:+4716194 None:intergenic
ATGGCACAAATTCATCTTCA+TGG 0.419518 4_1:-4718904 Msa0530660:CDS
CCAGATTGCTGACAAATATT+GGG 0.419715 4_1:-4715559 Msa0530660:CDS
GCACTTTCTGGCACACCCTC+TGG 0.420063 4_1:+4716184 None:intergenic
TGATCATCCGGAAATGTTAC+CGG 0.420713 4_1:+4716553 None:intergenic
CAGCAATCTGGTTCACCTTA+CGG 0.421232 4_1:+4715571 None:intergenic
TTCACATTCTCTTCAAAACT+TGG 0.423563 4_1:-4719299 Msa0530660:intron
TTCCATGTCTCGTGATCATC+CGG 0.424135 4_1:+4716541 None:intergenic
ATTGAAAATCAGTATTTCCT+TGG 0.426891 4_1:-4716352 Msa0530660:CDS
TTAACTGCTATGACTTTAGC+TGG 0.427079 4_1:-4715185 Msa0530660:three_prime_UTR
CATGAAACGTCGGGACTGTT+GGG 0.428061 4_1:+4715958 None:intergenic
CAGCTGTTTAGATCTATTGA+TGG 0.430877 4_1:-4716514 Msa0530660:CDS
GTTCATACCAAGATGATGAT+AGG 0.435880 4_1:-4715929 Msa0530660:intron
TCTTCGAACCCTCTTGTATC+GGG 0.436117 4_1:+4717502 None:intergenic
CGCTTATCCGACCTTCCACC+AGG 0.436478 4_1:+4716877 None:intergenic
TCCGGAAATGTTACCGGGGA+TGG 0.438701 4_1:+4716559 None:intergenic
AGCTAAATGGTAGGGCTGAT+AGG 0.439308 4_1:+4715704 None:intergenic
TCTTAAGTGAAAGTTCCTTT+GGG 0.441263 4_1:+4716266 None:intergenic
TGTTTAGATCTATTGATGGT+GGG 0.446034 4_1:-4716510 Msa0530660:CDS
TCATGAAACGTCGGGACTGT+TGG 0.446105 4_1:+4715957 None:intergenic
CTGTCTTGCAGCTAAATGGT+AGG 0.447434 4_1:+4715695 None:intergenic
GACATTCATTCCCGCCTTGA+AGG 0.449178 4_1:-4716688 Msa0530660:CDS
TTCAAAGTTCAAACCACAAA+TGG 0.450978 4_1:+4715287 None:intergenic
GTGACAAAACAATGGATCAT+AGG 0.451368 4_1:+4719384 None:intergenic
ATCTTCGAACCCTCTTGTAT+CGG 0.455754 4_1:+4717501 None:intergenic
AAACACATGATATACATTAC+CGG 0.460467 4_1:-4717237 Msa0530660:CDS
TGGTAATGAAAACAAAGATT+AGG 0.461452 4_1:+4715307 None:intergenic
AAAGTCTAGTGAAGGTGTTA+GGG 0.463222 4_1:-4717124 Msa0530660:CDS
GAAACCGCACAGTTCTTTGA+AGG 0.467829 4_1:-4717024 Msa0530660:CDS
GATTCTAGGAGGCCAAAGGC+TGG 0.467985 4_1:-4717180 Msa0530660:CDS
GCCGCCGAGAATCCGAGCCT+TGG 0.470752 4_1:+4715416 None:intergenic
TGTTTATACCGAAATTTCCT+TGG 0.471207 4_1:-4717208 Msa0530660:CDS
TATCCGGCACATGAGAATCT+TGG 0.471426 4_1:+4717349 None:intergenic
ATGATGCTACCGCCATCATC+AGG 0.471464 4_1:+4716967 None:intergenic
GCGAGAGCTGGGCTTATTAG+TGG 0.471776 4_1:-4716451 Msa0530660:CDS
CACTTGCTTCGCTATCCGAT+TGG 0.472419 4_1:-4715495 Msa0530660:CDS
TCACCAGAAGATTGTGGTTG+TGG 0.472585 4_1:-4716911 Msa0530660:CDS
GCTCTCTCGTAATCTGAATC+AGG 0.473696 4_1:+4715980 None:intergenic
AAGCTTAATGCTGGTGGTGG+TGG 0.475675 4_1:-4718850 Msa0530660:CDS
TTCGGTATAAACAGACCAAC+CGG 0.477585 4_1:+4717218 None:intergenic
AACTAAGTAGTGAGGATAGG+AGG 0.480878 4_1:+4715378 None:intergenic
ATTCTAGGAGGCCAAAGGCT+GGG 0.483116 4_1:-4717179 Msa0530660:CDS
CTGAAGATGCTGCGAGAGCT+GGG 0.483144 4_1:-4716462 Msa0530660:CDS
TTATGAGCCTCATCGGTGTT+GGG 0.483969 4_1:-4717289 Msa0530660:CDS
CCTTGAAGGACCGATCGCTT+GGG 0.484290 4_1:-4716674 Msa0530660:CDS
CTCACAGAGGAAAGGATGTA+AGG 0.488198 4_1:-4717382 Msa0530660:CDS
CTTATGAGCCTCATCGGTGT+TGG 0.488671 4_1:-4717290 Msa0530660:CDS
CCCAAGCGATCGGTCCTTCA+AGG 0.490151 4_1:+4716674 None:intergenic
TTACCAAGATTCTCATGTGC+CGG 0.490601 4_1:-4717352 Msa0530660:CDS
TCAGGTTCTGGTTGTTCAGA+AGG 0.491713 4_1:+4715998 None:intergenic
GGAGATGTCACACAGCTGCC+TGG 0.492596 4_1:-4715459 Msa0530660:CDS
CCAGGTGCTGCAATCACAAA+AGG 0.496013 4_1:-4716733 Msa0530660:CDS
CCATTCAAGACCTCCTCGAC+AGG 0.496478 4_1:+4717570 None:intergenic
CATTGATCTTTGGTTGATGT+TGG 0.498653 4_1:+4715761 None:intergenic
TACCGAAATTTCCTTGGTGA+GGG 0.498969 4_1:-4717202 Msa0530660:CDS
TTCTATTATTCCTCCATCCC+CGG 0.504693 4_1:-4716572 Msa0530660:CDS
CTGTTTAGATCTATTGATGG+TGG 0.506397 4_1:-4716511 Msa0530660:CDS
ATTATGAGTAAGATTGAAGC+CGG 0.506694 4_1:-4716244 Msa0530660:CDS
CAATCACAAAAGGCGGTCCA+AGG 0.512335 4_1:-4716723 Msa0530660:CDS
AGGATATCGTTCTGGCACTC+AGG 0.513143 4_1:-4716108 Msa0530660:CDS
CGTTCTGGCACTCAGGGCAA+AGG 0.513948 4_1:-4716101 Msa0530660:CDS
CCTTCACTAGCAACTCCAAT+CGG 0.513962 4_1:+4715480 None:intergenic
GAAACTGTTGGTCTTGGAAA+GGG 0.514436 4_1:-4717789 Msa0530660:CDS
GATCATCCGGAAATGTTACC+GGG 0.516686 4_1:+4716554 None:intergenic
TGGTGAGGAAATTGATAGGT+GGG 0.528326 4_1:-4717550 Msa0530660:CDS
AAGCAATATTGGACTGGCAG+AGG 0.531832 4_1:-4716153 Msa0530660:CDS
AACATAGATCATGAAACGTC+GGG 0.533395 4_1:+4715949 None:intergenic
ATGTCATGCCAAGGTTCCCT+TGG 0.535392 4_1:+4716706 None:intergenic
AGCGATCGGTCCTTCAAGGC+GGG 0.535565 4_1:+4716678 None:intergenic
GAGAATCCGAGCCTTGGTGT+CGG 0.538506 4_1:+4715422 None:intergenic
TCCAAGCAAAAGAGCTTCCA+AGG 0.539099 4_1:+4716335 None:intergenic
TAAGTCTTGCCACCAGAAAG+TGG 0.539707 4_1:+4717309 None:intergenic
CCATGGACTTGACCACGTGC+TGG 0.539957 4_1:+4715672 None:intergenic
TATTTGACGTTCTTCTGCCT+CGG 0.540130 4_1:-4716055 Msa0530660:CDS
AAGAAAGTATACGGAACTCC+AGG 0.540377 4_1:+4717405 None:intergenic
GTTTAGATCTATTGATGGTG+GGG 0.540703 4_1:-4716509 Msa0530660:CDS
CAAAATATTGCAGCTTCACA+TGG 0.543780 4_1:+4717478 None:intergenic
TCTTGCCTTCTCCAAATCAA+TGG 0.546831 4_1:+4717746 None:intergenic
TGATTTGGAGAAGGCAAGAG+TGG 0.552030 4_1:-4717742 Msa0530660:CDS
AAGGCGGTCCAAGGGAACCT+TGG 0.552221 4_1:-4716714 Msa0530660:CDS
GTGAAAGATGATAATCCTGT+TGG 0.552822 4_1:-4717621 Msa0530660:CDS
CCAGCACGTGGTCAAGTCCA+TGG 0.552842 4_1:-4715672 Msa0530660:CDS
ATGAGCATACTAATCCCAAA+TGG 0.553693 4_1:-4717698 Msa0530660:CDS
GTTCTGGCACTCAGGGCAAA+GGG 0.553846 4_1:-4716100 Msa0530660:CDS
TGCTACCATTGATTTGGAGA+AGG 0.554396 4_1:-4717751 Msa0530660:CDS
CAAAACATTGAGGAAACTGT+TGG 0.557099 4_1:-4717801 Msa0530660:CDS
GGAAACTGTTGGTCTTGGAA+AGG 0.558000 4_1:-4717790 Msa0530660:CDS
CCAAACTAAGTAGTGAGGAT+AGG 0.559043 4_1:+4715375 None:intergenic
CAACATCAACCAAAGATCAA+TGG 0.560182 4_1:-4715760 Msa0530660:CDS
TGAATGGTGAGGAAATTGAT+AGG 0.560352 4_1:-4717554 Msa0530660:CDS
TTCCGGATGATCACGAGACA+TGG 0.561317 4_1:-4716543 Msa0530660:CDS
GATATTAAGCCTGAAGACAT+TGG 0.562253 4_1:-4716304 Msa0530660:CDS
GGATATCGTTCTGGCACTCA+GGG 0.562290 4_1:-4716107 Msa0530660:CDS
TCTTCATGCTACTATCTATG+AGG 0.563357 4_1:-4718878 Msa0530660:CDS
GATGACGAATACATAATCGT+TGG 0.564804 4_1:-4715789 Msa0530660:CDS
ATACCGAAATTTCCTTGGTG+AGG 0.565309 4_1:-4717203 Msa0530660:CDS
AACGATGGAGGAAGCAAGGT+GGG 0.565356 4_1:-4716630 Msa0530660:CDS
AAAGACCGCAGCTGGGCTCG+AGG 0.565566 4_1:-4717447 Msa0530660:CDS
CGGTTCAAGCAATATTGGAC+TGG 0.566255 4_1:-4716159 Msa0530660:CDS
TTATGAGTAAGATTGAAGCC+GGG 0.567721 4_1:-4716243 Msa0530660:CDS
AAGTAGTGAGGATAGGAGGG+AGG 0.571376 4_1:+4715382 None:intergenic
TGGGATGATAGAACATCGGT+TGG 0.573109 4_1:-4717087 Msa0530660:CDS
TGTCTTGCAGCTAAATGGTA+GGG 0.573776 4_1:+4715696 None:intergenic
CCGCCATCATCAGGATTGCG+GGG 0.573969 4_1:+4716976 None:intergenic
ACTTTCTTCTCACAGAGGAA+AGG 0.574250 4_1:-4717390 Msa0530660:CDS
TACTCATCACCAGAAGATTG+TGG 0.574698 4_1:-4716917 Msa0530660:CDS
GATAAGCTTAATGCTGGTGG+TGG 0.575966 4_1:-4718853 Msa0530660:CDS
GAATGCCTCGAGCCCAGCTG+CGG 0.576491 4_1:+4717442 None:intergenic
TACCGCCATCATCAGGATTG+CGG 0.579693 4_1:+4716974 None:intergenic
GGATTTACTTGTCTCTCTGA+GGG 0.579805 4_1:-4716605 Msa0530660:CDS
ACTAAGTAGTGAGGATAGGA+GGG 0.580152 4_1:+4715379 None:intergenic
GGATAGCGAAGCAAGTGTCC+AGG 0.581630 4_1:+4715501 None:intergenic
CCTGTCGAGGAGGTCTTGAA+TGG 0.582151 4_1:-4717570 Msa0530660:CDS
AGCTGGGCTTATTAGTGGAA+AGG 0.583055 4_1:-4716446 Msa0530660:CDS
TGCTTTGCATCTCATCCCAA+AGG 0.583132 4_1:-4716281 Msa0530660:CDS
GAATCCGAGCCTTGGTGTCG+GGG 0.583277 4_1:+4715424 None:intergenic
GCAAGACTTATGAGCCTCAT+CGG 0.583714 4_1:-4717296 Msa0530660:CDS
TAGGTTGATGAAAATCATCA+TGG 0.587769 4_1:+4716761 None:intergenic
ACAGATCAGGCAAAACATTG+AGG 0.589416 4_1:-4717811 Msa0530660:intron
AAAGATCAATGGACGGAGCG+AGG 0.593749 4_1:-4715749 Msa0530660:CDS
GAGGGACTCTGAGATAGCGA+TGG 0.594266 4_1:-4715730 Msa0530660:CDS
ATGGAGGAAGCAAGGTGGGA+AGG 0.595810 4_1:-4716626 Msa0530660:CDS
GGAAATGTTACCGGGGATGG+AGG 0.599535 4_1:+4716562 None:intergenic
AGGGACTCTGAGATAGCGAT+GGG 0.600455 4_1:-4715729 Msa0530660:CDS
AGGATTTACTTGTCTCTCTG+AGG 0.601222 4_1:-4716606 Msa0530660:CDS
GAGGTTGATAAGCTTAATGC+TGG 0.603431 4_1:-4718859 Msa0530660:CDS
AAATCAAGAATGTATCCGTA+AGG 0.604233 4_1:-4715586 Msa0530660:CDS
ACATGATATACATTACCGGT+TGG 0.606826 4_1:-4717233 Msa0530660:CDS
CCGATTGGAGTTGCTAGTGA+AGG 0.611060 4_1:-4715480 Msa0530660:CDS
TATGAGTAAGATTGAAGCCG+GGG 0.612358 4_1:-4716242 Msa0530660:CDS
CCTTGGTGAGGGATTCTAGG+AGG 0.613168 4_1:-4717191 Msa0530660:CDS
AAGATCAATGGACGGAGCGA+GGG 0.613208 4_1:-4715748 Msa0530660:CDS
TGTTTAACTTTGAGCAACGA+TGG 0.613445 4_1:-4716645 Msa0530660:CDS
CGGGAATGAATGTCATGCCA+AGG 0.614171 4_1:+4716697 None:intergenic
AACAACACATCCCAAGCGAT+CGG 0.615121 4_1:+4716664 None:intergenic
GATTTGGAGAAGGCAAGAGT+GGG 0.615789 4_1:-4717741 Msa0530660:CDS
AATCACAAAAGGCGGTCCAA+GGG 0.616469 4_1:-4716722 Msa0530660:CDS
TGGTGGAAATTTCCTCAGCA+TGG 0.616523 4_1:-4718833 Msa0530660:intron
GAGCAACGATGGAGGAAGCA+AGG 0.617826 4_1:-4716634 Msa0530660:CDS
TGAATTACCTGGTGGAAGGT+CGG 0.619368 4_1:-4716884 Msa0530660:CDS
CGCCATCATCAGGATTGCGG+GGG 0.619690 4_1:+4716977 None:intergenic
TGGAGAAGGCAAGAGTGGGA+AGG 0.621315 4_1:-4717737 Msa0530660:CDS
AGGGAATCGAGGAAGATCCT+CGG 0.622355 4_1:-4716081 Msa0530660:CDS
TCTAGGAGGCCAAAGGCTGG+GGG 0.624607 4_1:-4717177 Msa0530660:CDS
AGCATATGTGCCTGTCGAGG+AGG 0.627896 4_1:-4717580 Msa0530660:CDS
GAACATAGATCATGAAACGT+CGG 0.633210 4_1:+4715948 None:intergenic
TGTTGTCCCAATGTGGCCAG+AGG 0.634138 4_1:-4716200 Msa0530660:CDS
GAGGGATTCTAGGAGGCCAA+AGG 0.637811 4_1:-4717184 Msa0530660:CDS
CTTCTGGTGATGAGTAAACA+TGG 0.641961 4_1:+4716924 None:intergenic
CGAGGAGGTCTTGAATGGTG+AGG 0.642464 4_1:-4717565 Msa0530660:CDS
TGAGGAAATTGATAGGTGGG+TGG 0.645001 4_1:-4717547 Msa0530660:CDS
GCATTATGGTATGAGCACCT+TGG 0.646788 4_1:-4715639 Msa0530660:CDS
TGAGCCTCATCGGTGTTGGG+AGG 0.651132 4_1:-4717286 Msa0530660:CDS
AGGAGTCATGAAGCATGCCA+AGG 0.651697 4_1:+4715622 None:intergenic
GTTGTCCCAATGTGGCCAGA+GGG 0.653005 4_1:-4716199 Msa0530660:CDS
AAGAGCATATGTGCCTGTCG+AGG 0.653021 4_1:-4717583 Msa0530660:CDS
AATCGGGAAGTAAAGAAACA+AGG 0.653307 4_1:-4716031 Msa0530660:CDS
TATCATATCTTCCATCACAA+AGG 0.653464 4_1:+4716824 None:intergenic
ATCAACCAAAGATCAATGGA+CGG 0.654662 4_1:-4715756 Msa0530660:CDS
CGTATACTTTCTTCTCACAG+AGG 0.655571 4_1:-4717395 Msa0530660:CDS
AGCGAAGCAAGTGTCCAGGA+AGG 0.657401 4_1:+4715505 None:intergenic
AGTGCAGTGTGACAAAACAA+TGG 0.657589 4_1:+4719376 None:intergenic
GGGTGTGCCAGAAAGTGCAT+CGG 0.660670 4_1:-4716179 Msa0530660:CDS
AATAAAACAGTACCATGCTG+AGG 0.661732 4_1:+4718821 None:intergenic
ACAGTGAATTACCTGGTGGA+AGG 0.662406 4_1:-4716888 Msa0530660:CDS
CAACGATGGAGGAAGCAAGG+TGG 0.668752 4_1:-4716631 Msa0530660:CDS
AAGAACGTCAAATAATTCCG+AGG 0.670151 4_1:+4716064 None:intergenic
AAGCGATCGGTCCTTCAAGG+CGG 0.671322 4_1:+4716677 None:intergenic
GGTGCTGCAATCACAAAAGG+CGG 0.672665 4_1:-4716730 Msa0530660:CDS
ACTCAGGGCAAAGGGAATCG+AGG 0.672681 4_1:-4716092 Msa0530660:CDS
ATGGTGAGGAAATTGATAGG+TGG 0.675988 4_1:-4717551 Msa0530660:CDS
CCCCGCAATCCTGATGATGG+CGG 0.678364 4_1:-4716976 Msa0530660:CDS
TCTTTACTTCCCGATTACCG+AGG 0.680953 4_1:+4716038 None:intergenic
ATATCCTCCCAACACCGATG+AGG 0.682280 4_1:+4717282 None:intergenic
TGTTTGGGATGATAGAACAT+CGG 0.683265 4_1:-4717091 Msa0530660:CDS
TGTACGTTGTTGTCCCAATG+TGG 0.686098 4_1:-4716207 Msa0530660:CDS
GCTGCAAGACAGCCAGCACG+TGG 0.687862 4_1:-4715684 Msa0530660:CDS
TGTCACGAAAGACCGCAGCT+GGG 0.688731 4_1:-4717454 Msa0530660:CDS
GTTGATAAGCTTAATGCTGG+TGG 0.689428 4_1:-4718856 Msa0530660:CDS
ACCAAGGCTCGGATTCTCGG+CGG 0.691037 4_1:-4715417 Msa0530660:CDS
ATAATGCCATGCGAAAACCA+TGG 0.691651 4_1:+4715655 None:intergenic
CCTAAAATACCACTTTCTGG+TGG 0.698637 4_1:-4717318 Msa0530660:CDS
GTTGTGGACAGTGAATTACC+TGG 0.700680 4_1:-4716895 Msa0530660:CDS
ATCATCCGGAAATGTTACCG+GGG 0.705073 4_1:+4716555 None:intergenic
TTAACTTTGAGCAACGATGG+AGG 0.710551 4_1:-4716642 Msa0530660:CDS
CCTCCTAGAATCCCTCACCA+AGG 0.715713 4_1:+4717191 None:intergenic
GGACTGGCAGAGGAGAACAA+TGG 0.727822 4_1:-4716143 Msa0530660:CDS
AGTACCTTCAAAGAACTGTG+CGG 0.748352 4_1:+4717020 None:intergenic
CTGGTGATGAGTAAACATGG+TGG 0.787330 4_1:+4716927 None:intergenic
GTGGACAGTGAATTACCTGG+TGG 0.811877 4_1:-4716892 Msa0530660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTATTTTTTAAAATT+CGG + chr4_1:4715587-4715606 None:intergenic 0.0%
!!! AAAAAAAAAAAAAAATATTT+TGG - chr4_1:4715918-4715937 Msa0530660:intron 0.0%
!!! CAAAAAGTTTTTTTTTTTTA+TGG - chr4_1:4715624-4715643 Msa0530660:CDS 10.0%
!!! ACTGTTTTATTTAATTATTT+TGG - chr4_1:4715790-4715809 Msa0530660:CDS 10.0%
!!! AAAAAAAAAAAATATTTTGG+TGG - chr4_1:4715921-4715940 Msa0530660:intron 10.0%
!!! ATTTTTAGATTTCATGTTTT+TGG - chr4_1:4715839-4715858 Msa0530660:intron 15.0%
!! TAAGTATAAGCAAATAAATA+GGG + chr4_1:4716767-4716786 None:intergenic 15.0%
!! ATAAGTATAAGCAAATAAAT+AGG + chr4_1:4716768-4716787 None:intergenic 15.0%
!!! TTTTTAAACAGAGGAAAATA+AGG + chr4_1:4715178-4715197 None:intergenic 20.0%
!!! TTTAATTATTTTGGCCTATT+TGG - chr4_1:4715799-4715818 Msa0530660:intron 20.0%
!!! AAAAAAAAATATTTTGGTGG+TGG - chr4_1:4715924-4715943 Msa0530660:intron 20.0%
!!! AAAAAAAATATTTTGGTGGT+GGG - chr4_1:4715925-4715944 Msa0530660:intron 20.0%
!! TAATATTGACAATTAACCAA+CGG + chr4_1:4716164-4716183 None:intergenic 20.0%
!! ATGCTTATATTAATGCTATT+CGG - chr4_1:4718203-4718222 Msa0530660:intron 20.0%
!! AAATTACTGTCATAAATTAC+AGG - chr4_1:4718702-4718721 Msa0530660:intron 20.0%
!! AAATCACAAAAATCTGTATT+TGG + chr4_1:4719387-4719406 None:intergenic 20.0%
! AAAGAGTTAAATCAGATCAA+TGG + chr4_1:4715410-4715429 None:intergenic 25.0%
! TTGAATCATTAGATCCAAAT+AGG + chr4_1:4715816-4715835 None:intergenic 25.0%
!!! AAAAAAATATTTTGGTGGTG+GGG - chr4_1:4715926-4715945 Msa0530660:intron 25.0%
! AATATTGACAATTAACCAAC+GGG + chr4_1:4716163-4716182 None:intergenic 25.0%
!!! ATATCAGTTTTGTCAAATGT+CGG - chr4_1:4716200-4716219 Msa0530660:CDS 25.0%
! GATAAAGTTAATGGTTATTC+AGG + chr4_1:4716478-4716497 None:intergenic 25.0%
! GATGCATAAGATAAAGTTAA+TGG + chr4_1:4716487-4716506 None:intergenic 25.0%
!!! TAATTTGCTTGATTTAGCTT+TGG + chr4_1:4716645-4716664 None:intergenic 25.0%
! TGTTTATACATACATTGACA+TGG - chr4_1:4716678-4716697 Msa0530660:CDS 25.0%
! AATAGGGTCATTAATAATGA+AGG + chr4_1:4716751-4716770 None:intergenic 25.0%
!!! ATTTTAGGGATGAAATTATC+CGG + chr4_1:4717269-4717288 None:intergenic 25.0%
! AAACACATGATATACATTAC+CGG - chr4_1:4717362-4717381 Msa0530660:CDS 25.0%
! ATTGAAAATCAGTATTTCCT+TGG - chr4_1:4718247-4718266 Msa0530660:intron 25.0%
!! TGGTAATGAAAACAAAGATT+AGG + chr4_1:4719295-4719314 None:intergenic 25.0%
!!! TTTGTTTTCATTACCATTTG+TGG - chr4_1:4719299-4719318 Msa0530660:intron 25.0%
!!! AAGTCTCTGTTTTTAAACAG+AGG + chr4_1:4715187-4715206 None:intergenic 30.0%
AGGAAGATGAAGAGAATAAA+AGG + chr4_1:4715279-4715298 None:intergenic 30.0%
TTCACATTCTCTTCAAAACT+TGG - chr4_1:4715300-4715319 Msa0530660:three_prime_UTR 30.0%
AGTTAAATCAGATCAATGGT+TGG + chr4_1:4715406-4715425 None:intergenic 30.0%
!! GTTTTGTTCTGACTTTAAGT+AGG - chr4_1:4715523-4715542 Msa0530660:CDS 30.0%
! TGTGATTTGTAGGTGAAAAA+TGG - chr4_1:4715676-4715695 Msa0530660:CDS 30.0%
AAAGCAAAATCCAATGAGTA+AGG + chr4_1:4716561-4716580 None:intergenic 30.0%
! TTGGATTTTGCTTTCGTTAT+TGG - chr4_1:4716567-4716586 Msa0530660:CDS 30.0%
TACATTGCACATACATACAT+AGG - chr4_1:4716596-4716615 Msa0530660:CDS 30.0%
!! TGATTTAGCTTTGGTTATTC+AGG + chr4_1:4716636-4716655 None:intergenic 30.0%
AAACGCAAAACTAAAGAAAC+TGG + chr4_1:4716718-4716737 None:intergenic 30.0%
TGCTTATACTTATACAGATC+AGG - chr4_1:4716775-4716794 Msa0530660:CDS 30.0%
! GTATATCATGTGTTTTGCAT+TGG + chr4_1:4717357-4717376 None:intergenic 30.0%
TGTTTATACCGAAATTTCCT+TGG - chr4_1:4717391-4717410 Msa0530660:CDS 30.0%
CTAAAGAAAAAGTCTAGTGA+AGG - chr4_1:4717467-4717486 Msa0530660:CDS 30.0%
!!! GAAGAATTGTGAGTTTTGTT+GGG - chr4_1:4717744-4717763 Msa0530660:CDS 30.0%
!!! AAGAATTGTGAGTTTTGTTG+GGG - chr4_1:4717745-4717764 Msa0530660:CDS 30.0%
TATCATATCTTCCATCACAA+AGG + chr4_1:4717778-4717797 None:intergenic 30.0%
!! TAGGTTGATGAAAATCATCA+TGG + chr4_1:4717841-4717860 None:intergenic 30.0%
! TGTTTAGATCTATTGATGGT+GGG - chr4_1:4718089-4718108 Msa0530660:intron 30.0%
TCTTAAGTGAAAGTTCCTTT+GGG + chr4_1:4718336-4718355 None:intergenic 30.0%
ATCTTAAGTGAAAGTTCCTT+TGG + chr4_1:4718337-4718356 None:intergenic 30.0%
ATTATGAGTAAGATTGAAGC+CGG - chr4_1:4718355-4718374 Msa0530660:intron 30.0%
AACAATGGAGATGATGTATA+AGG - chr4_1:4718471-4718490 Msa0530660:intron 30.0%
AAACTTACCTATCATCATCT+TGG + chr4_1:4718680-4718699 None:intergenic 30.0%
! ATTCTTGATTTTCTGGATGA+AGG + chr4_1:4719004-4719023 None:intergenic 30.0%
AAATCAAGAATGTATCCGTA+AGG - chr4_1:4719013-4719032 Msa0530660:intron 30.0%
AAAAACCAAACTAAGTAGTG+AGG + chr4_1:4719232-4719251 None:intergenic 30.0%
TTCAAAGTTCAAACCACAAA+TGG + chr4_1:4719315-4719334 None:intergenic 30.0%
GTGACAAAACAATGGATCAT+AGG + chr4_1:4715218-4715237 None:intergenic 35.0%
!!! GTTTTGAAGAGAATGTGAAG+AGG + chr4_1:4715299-4715318 None:intergenic 35.0%
TTGTGTGATCTGATGAGAAA+TGG - chr4_1:4715648-4715667 Msa0530660:CDS 35.0%
TGTGTGATCTGATGAGAAAT+GGG - chr4_1:4715649-4715668 Msa0530660:CDS 35.0%
ATGGCACAAATTCATCTTCA+TGG - chr4_1:4715695-4715714 Msa0530660:CDS 35.0%
TCTTCATGCTACTATCTATG+AGG - chr4_1:4715721-4715740 Msa0530660:CDS 35.0%
AATAAAACAGTACCATGCTG+AGG + chr4_1:4715781-4715800 None:intergenic 35.0%
CATCTGTTACAAATTAGGCA+TGG + chr4_1:4716261-4716280 None:intergenic 35.0%
! CATGCCTAATTTGTAACAGA+TGG - chr4_1:4716259-4716278 Msa0530660:CDS 35.0%
! CCTAATTTGTAACAGATGGT+GGG - chr4_1:4716263-4716282 Msa0530660:CDS 35.0%
! CTAATTTGTAACAGATGGTG+GGG - chr4_1:4716264-4716283 Msa0530660:CDS 35.0%
! TTTAAGGTGGCTCAAAATGA+CGG - chr4_1:4716296-4716315 Msa0530660:CDS 35.0%
CACAAAGTAGTTTCAATCGA+AGG + chr4_1:4716435-4716454 None:intergenic 35.0%
CAAAACATTGAGGAAACTGT+TGG - chr4_1:4716798-4716817 Msa0530660:CDS 35.0%
! ACTCTATGCTACCATTGATT+TGG - chr4_1:4716842-4716861 Msa0530660:CDS 35.0%
ATGAGCATACTAATCCCAAA+TGG - chr4_1:4716901-4716920 Msa0530660:CDS 35.0%
TGAAAAGACTCGTACCATTT+GGG + chr4_1:4716918-4716937 None:intergenic 35.0%
TCACATTTACTGTGCTCATA+TGG - chr4_1:4716935-4716954 Msa0530660:CDS 35.0%
GTGAAAGATGATAATCCTGT+TGG - chr4_1:4716978-4716997 Msa0530660:CDS 35.0%
TGAATGGTGAGGAAATTGAT+AGG - chr4_1:4717045-4717064 Msa0530660:CDS 35.0%
TGAAAAAAACCCGATACAAG+AGG - chr4_1:4717088-4717107 Msa0530660:CDS 35.0%
GAAAAAAACCCGATACAAGA+GGG - chr4_1:4717089-4717108 Msa0530660:CDS 35.0%
CAAAATATTGCAGCTTCACA+TGG + chr4_1:4717124-4717143 None:intergenic 35.0%
! ATTCAAAGCGCTAAATTTCC+TGG - chr4_1:4717176-4717195 Msa0530660:CDS 35.0%
! CTCTGTGAGAAGAAAGTATA+CGG + chr4_1:4717206-4717225 None:intergenic 35.0%
ATCCCTAAAATACCACTTTC+TGG - chr4_1:4717278-4717297 Msa0530660:CDS 35.0%
! CACCAGAAAGTGGTATTTTA+GGG + chr4_1:4717283-4717302 None:intergenic 35.0%
ACATGATATACATTACCGGT+TGG - chr4_1:4717366-4717385 Msa0530660:CDS 35.0%
!! AAAAGTCTAGTGAAGGTGTT+AGG - chr4_1:4717474-4717493 Msa0530660:CDS 35.0%
!! AAAGTCTAGTGAAGGTGTTA+GGG - chr4_1:4717475-4717494 Msa0530660:CDS 35.0%
!! TTAGGGTTTTGATGCTTGTT+TGG - chr4_1:4717492-4717511 Msa0530660:CDS 35.0%
!! TAGGGTTTTGATGCTTGTTT+GGG - chr4_1:4717493-4717512 Msa0530660:CDS 35.0%
! TGTTTGGGATGATAGAACAT+CGG - chr4_1:4717508-4717527 Msa0530660:CDS 35.0%
!! ATCGGTTGGTTTGTTGAAAA+AGG - chr4_1:4717526-4717545 Msa0530660:CDS 35.0%
!! GTTGGTTTGTTGAAAAAGGA+TGG - chr4_1:4717530-4717549 Msa0530660:CDS 35.0%
!! GTTGAAAAAGGATGGATTGA+TGG - chr4_1:4717538-4717557 Msa0530660:CDS 35.0%
!! CGAAGAATTGTGAGTTTTGT+TGG - chr4_1:4717743-4717762 Msa0530660:CDS 35.0%
!!! AGAATTGTGAGTTTTGTTGG+GGG - chr4_1:4717746-4717765 Msa0530660:CDS 35.0%
!! GTTCTAAAAAGTGAGTGGAA+TGG + chr4_1:4717803-4717822 None:intergenic 35.0%
!! CAAGAGTTCTAAAAAGTGAG+TGG + chr4_1:4717808-4717827 None:intergenic 35.0%
TTTCATCAACCTAACTTTCC+AGG - chr4_1:4717848-4717867 Msa0530660:intron 35.0%
! TGTTTAACTTTGAGCAACGA+TGG - chr4_1:4717954-4717973 Msa0530660:intron 35.0%
CAGCTGTTTAGATCTATTGA+TGG - chr4_1:4718085-4718104 Msa0530660:intron 35.0%
CTGTTTAGATCTATTGATGG+TGG - chr4_1:4718088-4718107 Msa0530660:intron 35.0%
!! GTTTAGATCTATTGATGGTG+GGG - chr4_1:4718090-4718109 Msa0530660:intron 35.0%
GATATTAAGCCTGAAGACAT+TGG - chr4_1:4718295-4718314 Msa0530660:intron 35.0%
TTATGAGTAAGATTGAAGCC+GGG - chr4_1:4718356-4718375 Msa0530660:intron 35.0%
GATGTATAAGGATATCGTTC+TGG - chr4_1:4718483-4718502 Msa0530660:intron 35.0%
AAGAACGTCAAATAATTCCG+AGG + chr4_1:4718538-4718557 None:intergenic 35.0%
AATCGGGAAGTAAAGAAACA+AGG - chr4_1:4718568-4718587 Msa0530660:intron 35.0%
AACATAGATCATGAAACGTC+GGG + chr4_1:4718653-4718672 None:intergenic 35.0%
GAACATAGATCATGAAACGT+CGG + chr4_1:4718654-4718673 None:intergenic 35.0%
GTTCATACCAAGATGATGAT+AGG - chr4_1:4718670-4718689 Msa0530660:intron 35.0%
GATGACGAATACATAATCGT+TGG - chr4_1:4718810-4718829 Msa0530660:intron 35.0%
! CATTGATCTTTGGTTGATGT+TGG + chr4_1:4718841-4718860 None:intergenic 35.0%
CAACATCAACCAAAGATCAA+TGG - chr4_1:4718839-4718858 Msa0530660:CDS 35.0%
ATCAACCAAAGATCAATGGA+CGG - chr4_1:4718843-4718862 Msa0530660:CDS 35.0%
! TTGATTTTCTGGATGAAGGA+AGG + chr4_1:4719000-4719019 None:intergenic 35.0%
! CGGATACATTCTTGATTTTC+TGG + chr4_1:4719011-4719030 None:intergenic 35.0%
ACCAGATTGCTGACAAATAT+TGG - chr4_1:4719039-4719058 Msa0530660:intron 35.0%
CCAGATTGCTGACAAATATT+GGG - chr4_1:4719040-4719059 Msa0530660:intron 35.0%
TTAACTGCTATGACTTTAGC+TGG - chr4_1:4719414-4719433 Msa0530660:five_prime_UTR 35.0%
AGTGCAGTGTGACAAAACAA+TGG + chr4_1:4715226-4715245 None:intergenic 40.0%
GTGTGATCTGATGAGAAATG+GGG - chr4_1:4715650-4715669 Msa0530660:CDS 40.0%
! AATGGGGTTGTGTGATTTGT+AGG - chr4_1:4715666-4715685 Msa0530660:CDS 40.0%
!! GAGGTTGATAAGCTTAATGC+TGG - chr4_1:4715740-4715759 Msa0530660:CDS 40.0%
! GTTGATAAGCTTAATGCTGG+TGG - chr4_1:4715743-4715762 Msa0530660:CDS 40.0%
ACAGATCCTAAAAGCAAGCA+GGG + chr4_1:4715974-4715993 None:intergenic 40.0%
TTACAAATTAGGCATGGCAG+TGG + chr4_1:4716255-4716274 None:intergenic 40.0%
! GCCTAATTTGTAACAGATGG+TGG - chr4_1:4716262-4716281 Msa0530660:CDS 40.0%
CCCACCATCTGTTACAAATT+AGG + chr4_1:4716266-4716285 None:intergenic 40.0%
! TCAGTGTTATCGATTGCAGA+TGG + chr4_1:4716347-4716366 None:intergenic 40.0%
ACAGATCAGGCAAAACATTG+AGG - chr4_1:4716788-4716807 Msa0530660:CDS 40.0%
! ATTGAGGAAACTGTTGGTCT+TGG - chr4_1:4716804-4716823 Msa0530660:CDS 40.0%
!! GAAACTGTTGGTCTTGGAAA+GGG - chr4_1:4716810-4716829 Msa0530660:CDS 40.0%
!! TGCTACCATTGATTTGGAGA+AGG - chr4_1:4716848-4716867 Msa0530660:CDS 40.0%
TCTTGCCTTCTCCAAATCAA+TGG + chr4_1:4716856-4716875 None:intergenic 40.0%
GTGAAAAGACTCGTACCATT+TGG + chr4_1:4716919-4716938 None:intergenic 40.0%
CCTGTTGGAGCAACTTTAAT+CGG - chr4_1:4716993-4717012 Msa0530660:CDS 40.0%
ATGGTGAGGAAATTGATAGG+TGG - chr4_1:4717048-4717067 Msa0530660:CDS 40.0%
TGGTGAGGAAATTGATAGGT+GGG - chr4_1:4717049-4717068 Msa0530660:CDS 40.0%
! TGATAGGTGGGTGGAAATTT+TGG - chr4_1:4717061-4717080 Msa0530660:CDS 40.0%
ATCTTCGAACCCTCTTGTAT+CGG + chr4_1:4717101-4717120 None:intergenic 40.0%
! AAGAAAGTATACGGAACTCC+AGG + chr4_1:4717197-4717216 None:intergenic 40.0%
CGTATACTTTCTTCTCACAG+AGG - chr4_1:4717204-4717223 Msa0530660:CDS 40.0%
ACTTTCTTCTCACAGAGGAA+AGG - chr4_1:4717209-4717228 Msa0530660:CDS 40.0%
TTACCAAGATTCTCATGTGC+CGG - chr4_1:4717247-4717266 Msa0530660:CDS 40.0%
! CCACCAGAAAGTGGTATTTT+AGG + chr4_1:4717284-4717303 None:intergenic 40.0%
CCTAAAATACCACTTTCTGG+TGG - chr4_1:4717281-4717300 Msa0530660:CDS 40.0%
!! CATGTGTTTTGCATTGGTGA+TGG + chr4_1:4717351-4717370 None:intergenic 40.0%
TTCGGTATAAACAGACCAAC+CGG + chr4_1:4717384-4717403 None:intergenic 40.0%
ATACCGAAATTTCCTTGGTG+AGG - chr4_1:4717396-4717415 Msa0530660:CDS 40.0%
TACCGAAATTTCCTTGGTGA+GGG - chr4_1:4717397-4717416 Msa0530660:CDS 40.0%
ATCCCTCACCAAGGAAATTT+CGG + chr4_1:4717402-4717421 None:intergenic 40.0%
AGTACCTTCAAAGAACTGTG+CGG + chr4_1:4717582-4717601 None:intergenic 40.0%
! CTTCTGGTGATGAGTAAACA+TGG + chr4_1:4717678-4717697 None:intergenic 40.0%
TACTCATCACCAGAAGATTG+TGG - chr4_1:4717682-4717701 Msa0530660:CDS 40.0%
TTAACTTTGAGCAACGATGG+AGG - chr4_1:4717957-4717976 Msa0530660:intron 40.0%
AGGATTTACTTGTCTCTCTG+AGG - chr4_1:4717993-4718012 Msa0530660:intron 40.0%
GGATTTACTTGTCTCTCTGA+GGG - chr4_1:4717994-4718013 Msa0530660:intron 40.0%
TTCTATTATTCCTCCATCCC+CGG - chr4_1:4718027-4718046 Msa0530660:intron 40.0%
TGATCATCCGGAAATGTTAC+CGG + chr4_1:4718049-4718068 None:intergenic 40.0%
TATGAGTAAGATTGAAGCCG+GGG - chr4_1:4718357-4718376 Msa0530660:intron 40.0%
!! TGCATCGGTTCAAGCAATAT+TGG - chr4_1:4718435-4718454 Msa0530660:intron 40.0%
TATTTGACGTTCTTCTGCCT+CGG - chr4_1:4718544-4718563 Msa0530660:intron 40.0%
TCGTAATCTGAATCAGGTTC+TGG + chr4_1:4718616-4718635 None:intergenic 40.0%
TGTCTTGCAGCTAAATGGTA+GGG + chr4_1:4718906-4718925 None:intergenic 40.0%
ATAATGCCATGCGAAAACCA+TGG + chr4_1:4718947-4718966 None:intergenic 40.0%
! ATGGTTTTCGCATGGCATTA+TGG - chr4_1:4718946-4718965 Msa0530660:intron 40.0%
CCCAATATTTGTCAGCAATC+TGG + chr4_1:4719043-4719062 None:intergenic 40.0%
TCGGGGAAAAATTCAAATCC+AGG + chr4_1:4719161-4719180 None:intergenic 40.0%
ACTAAGTAGTGAGGATAGGA+GGG + chr4_1:4719223-4719242 None:intergenic 40.0%
AACTAAGTAGTGAGGATAGG+AGG + chr4_1:4719224-4719243 None:intergenic 40.0%
CCAAACTAAGTAGTGAGGAT+AGG + chr4_1:4719227-4719246 None:intergenic 40.0%
CCTATCCTCACTACTTAGTT+TGG - chr4_1:4719224-4719243 Msa0530660:intron 40.0%
TTGTCACACTGCACTCTTCT+CGG - chr4_1:4715231-4715250 Msa0530660:three_prime_UTR 45.0%
GATAAGCTTAATGCTGGTGG+TGG - chr4_1:4715746-4715765 Msa0530660:CDS 45.0%
TGGTGGAAATTTCCTCAGCA+TGG - chr4_1:4715766-4715785 Msa0530660:CDS 45.0%
GGATCACTGATGCATCAAAG+TGG - chr4_1:4715947-4715966 Msa0530660:CDS 45.0%
CACAGATCCTAAAAGCAAGC+AGG + chr4_1:4715975-4715994 None:intergenic 45.0%
AAGTCTCATCACAGATTCGC+TGG + chr4_1:4716069-4716088 None:intergenic 45.0%
! CCAACGGGTTTGCAAATGAT+CGG + chr4_1:4716148-4716167 None:intergenic 45.0%
TGAGCCACCTTAAAACTCCA+TGG + chr4_1:4716290-4716309 None:intergenic 45.0%
!!! GGCTCAAAATGACGGACTTT+TGG - chr4_1:4716304-4716323 Msa0530660:CDS 45.0%
! GTGTTATCGATTGCAGATGG+CGG + chr4_1:4716344-4716363 None:intergenic 45.0%
TGCTTCAGCACCTTACTCAT+TGG - chr4_1:4716548-4716567 Msa0530660:CDS 45.0%
!! GGAAACTGTTGGTCTTGGAA+AGG - chr4_1:4716809-4716828 Msa0530660:CDS 45.0%
! TGATTTGGAGAAGGCAAGAG+TGG - chr4_1:4716857-4716876 Msa0530660:CDS 45.0%
GATTTGGAGAAGGCAAGAGT+GGG - chr4_1:4716858-4716877 Msa0530660:CDS 45.0%
CCGATTAAAGTTGCTCCAAC+AGG + chr4_1:4716996-4717015 None:intergenic 45.0%
TGAGGAAATTGATAGGTGGG+TGG - chr4_1:4717052-4717071 Msa0530660:CDS 45.0%
TCTTCGAACCCTCTTGTATC+GGG + chr4_1:4717100-4717119 None:intergenic 45.0%
CTCACAGAGGAAAGGATGTA+AGG - chr4_1:4717217-4717236 Msa0530660:CDS 45.0%
TATCCGGCACATGAGAATCT+TGG + chr4_1:4717253-4717272 None:intergenic 45.0%
TAAGTCTTGCCACCAGAAAG+TGG + chr4_1:4717293-4717312 None:intergenic 45.0%
GCAAGACTTATGAGCCTCAT+CGG - chr4_1:4717303-4717322 Msa0530660:CDS 45.0%
! TTATGAGCCTCATCGGTGTT+GGG - chr4_1:4717310-4717329 Msa0530660:CDS 45.0%
TTTCCTTGGTGAGGGATTCT+AGG - chr4_1:4717405-4717424 Msa0530660:CDS 45.0%
TGGGATGATAGAACATCGGT+TGG - chr4_1:4717512-4717531 Msa0530660:CDS 45.0%
GAAACCGCACAGTTCTTTGA+AGG - chr4_1:4717575-4717594 Msa0530660:CDS 45.0%
! CTGGTGATGAGTAAACATGG+TGG + chr4_1:4717675-4717694 None:intergenic 45.0%
TCACCAGAAGATTGTGGTTG+TGG - chr4_1:4717688-4717707 Msa0530660:CDS 45.0%
TGTCCACAACCACAATCTTC+TGG + chr4_1:4717694-4717713 None:intergenic 45.0%
GTTGTGGACAGTGAATTACC+TGG - chr4_1:4717704-4717723 Msa0530660:CDS 45.0%
ACAGTGAATTACCTGGTGGA+AGG - chr4_1:4717711-4717730 Msa0530660:CDS 45.0%
TGAATTACCTGGTGGAAGGT+CGG - chr4_1:4717715-4717734 Msa0530660:CDS 45.0%
ATTGCAGCACCTGGAAAGTT+AGG + chr4_1:4717860-4717879 None:intergenic 45.0%
AATCACAAAAGGCGGTCCAA+GGG - chr4_1:4717877-4717896 Msa0530660:intron 45.0%
AACAACACATCCCAAGCGAT+CGG + chr4_1:4717938-4717957 None:intergenic 45.0%
ATCATCCGGAAATGTTACCG+GGG + chr4_1:4718047-4718066 None:intergenic 45.0%
GATCATCCGGAAATGTTACC+GGG + chr4_1:4718048-4718067 None:intergenic 45.0%
TTCCATGTCTCGTGATCATC+CGG + chr4_1:4718061-4718080 None:intergenic 45.0%
CAGCATCTTCAGGAGTTTCT+GGG + chr4_1:4718129-4718148 None:intergenic 45.0%
AGCTGGGCTTATTAGTGGAA+AGG - chr4_1:4718153-4718172 Msa0530660:intron 45.0%
! TCCTTGGAAGCTCTTTTGCT+TGG - chr4_1:4718263-4718282 Msa0530660:intron 45.0%
TCCAAGCAAAAGAGCTTCCA+AGG + chr4_1:4718267-4718286 None:intergenic 45.0%
! TGCAAAGCACCAATGTCTTC+AGG + chr4_1:4718307-4718326 None:intergenic 45.0%
TGCTTTGCATCTCATCCCAA+AGG - chr4_1:4718318-4718337 Msa0530660:intron 45.0%
! GTACACAGTGAACTTTTCCC+CGG + chr4_1:4718377-4718396 None:intergenic 45.0%
TGTACGTTGTTGTCCCAATG+TGG - chr4_1:4718392-4718411 Msa0530660:intron 45.0%
CGGTTCAAGCAATATTGGAC+TGG - chr4_1:4718440-4718459 Msa0530660:intron 45.0%
!! AAGCAATATTGGACTGGCAG+AGG - chr4_1:4718446-4718465 Msa0530660:intron 45.0%
TCTTTACTTCCCGATTACCG+AGG + chr4_1:4718564-4718583 None:intergenic 45.0%
! TCAGGTTCTGGTTGTTCAGA+AGG + chr4_1:4718604-4718623 None:intergenic 45.0%
GCTCTCTCGTAATCTGAATC+AGG + chr4_1:4718622-4718641 None:intergenic 45.0%
AGCTAAATGGTAGGGCTGAT+AGG + chr4_1:4718898-4718917 None:intergenic 45.0%
CTGTCTTGCAGCTAAATGGT+AGG + chr4_1:4718907-4718926 None:intergenic 45.0%
! TCAAGTCCATGGTTTTCGCA+TGG - chr4_1:4718938-4718957 Msa0530660:intron 45.0%
GCATTATGGTATGAGCACCT+TGG - chr4_1:4718960-4718979 Msa0530660:intron 45.0%
! CAGCAATCTGGTTCACCTTA+CGG + chr4_1:4719031-4719050 None:intergenic 45.0%
CCTTCACTAGCAACTCCAAT+CGG + chr4_1:4719122-4719141 None:intergenic 45.0%
! TGAATTTTTCCCCGACACCA+AGG - chr4_1:4719166-4719185 Msa0530660:intron 45.0%
CTTTAAGTAGGCCCCGTTAG+TGG - chr4_1:4715535-4715554 Msa0530660:CDS 50.0%
!! AAGCTTAATGCTGGTGGTGG+TGG - chr4_1:4715749-4715768 Msa0530660:CDS 50.0%
!! AGTGGACCCTGCTTGCTTTT+AGG - chr4_1:4715965-4715984 Msa0530660:CDS 50.0%
CCGATCATTTGCAAACCCGT+TGG - chr4_1:4716145-4716164 Msa0530660:CDS 50.0%
AGTGGCCAAAATATCCGCCA+TGG + chr4_1:4716237-4716256 None:intergenic 50.0%
!!! GGACTTTTGGCTTTCCACCA+TGG - chr4_1:4716317-4716336 Msa0530660:CDS 50.0%
! AAGAGCATATGTGCCTGTCG+AGG - chr4_1:4717016-4717035 Msa0530660:CDS 50.0%
CTTATGAGCCTCATCGGTGT+TGG - chr4_1:4717309-4717328 Msa0530660:CDS 50.0%
ATATCCTCCCAACACCGATG+AGG + chr4_1:4717320-4717339 None:intergenic 50.0%
! ATTCTAGGAGGCCAAAGGCT+GGG - chr4_1:4717420-4717439 Msa0530660:CDS 50.0%
TACCGCCATCATCAGGATTG+CGG + chr4_1:4717628-4717647 None:intergenic 50.0%
ATGATGCTACCGCCATCATC+AGG + chr4_1:4717635-4717654 None:intergenic 50.0%
!! TGATGGCGGTAGCATCATTC+AGG - chr4_1:4717637-4717656 Msa0530660:CDS 50.0%
GTGGACAGTGAATTACCTGG+TGG - chr4_1:4717707-4717726 Msa0530660:CDS 50.0%
! CCTTTTGTGATTGCAGCACC+TGG + chr4_1:4717869-4717888 None:intergenic 50.0%
! CCAGGTGCTGCAATCACAAA+AGG - chr4_1:4717866-4717885 Msa0530660:intron 50.0%
! GGTGCTGCAATCACAAAAGG+CGG - chr4_1:4717869-4717888 Msa0530660:intron 50.0%
CAATCACAAAAGGCGGTCCA+AGG - chr4_1:4717876-4717895 Msa0530660:intron 50.0%
ATGTCATGCCAAGGTTCCCT+TGG + chr4_1:4717896-4717915 None:intergenic 50.0%
CGGGAATGAATGTCATGCCA+AGG + chr4_1:4717905-4717924 None:intergenic 50.0%
GACATTCATTCCCGCCTTGA+AGG - chr4_1:4717911-4717930 Msa0530660:intron 50.0%
AACGATGGAGGAAGCAAGGT+GGG - chr4_1:4717969-4717988 Msa0530660:intron 50.0%
TCCATCCCCGGTAACATTTC+CGG - chr4_1:4718039-4718058 Msa0530660:intron 50.0%
TTCCGGATGATCACGAGACA+TGG - chr4_1:4718056-4718075 Msa0530660:intron 50.0%
!!! ATTGATGGTGGGGCTGCTTT+TGG - chr4_1:4718100-4718119 Msa0530660:intron 50.0%
!!! TTGATGGTGGGGCTGCTTTT+GGG - chr4_1:4718101-4718120 Msa0530660:intron 50.0%
GCAGCATCTTCAGGAGTTTC+TGG + chr4_1:4718130-4718149 None:intergenic 50.0%
! GGAAGCTCTTTTGCTTGGAG+TGG - chr4_1:4718268-4718287 Msa0530660:intron 50.0%
! CTCTTTTGCTTGGAGTGGTG+AGG - chr4_1:4718273-4718292 Msa0530660:intron 50.0%
GCTTGAACCGATGCACTTTC+TGG + chr4_1:4718430-4718449 None:intergenic 50.0%
AGGATATCGTTCTGGCACTC+AGG - chr4_1:4718491-4718510 Msa0530660:intron 50.0%
GGATATCGTTCTGGCACTCA+GGG - chr4_1:4718492-4718511 Msa0530660:intron 50.0%
AGGGAATCGAGGAAGATCCT+CGG - chr4_1:4718518-4718537 Msa0530660:intron 50.0%
CGTTCTTCTGCCTCGGTAAT+CGG - chr4_1:4718551-4718570 Msa0530660:intron 50.0%
GTTCTTCTGCCTCGGTAATC+GGG - chr4_1:4718552-4718571 Msa0530660:intron 50.0%
CATGAAACGTCGGGACTGTT+GGG + chr4_1:4718644-4718663 None:intergenic 50.0%
TCATGAAACGTCGGGACTGT+TGG + chr4_1:4718645-4718664 None:intergenic 50.0%
TCGCTCCGTCCATTGATCTT+TGG + chr4_1:4718851-4718870 None:intergenic 50.0%
AAAGATCAATGGACGGAGCG+AGG - chr4_1:4718850-4718869 Msa0530660:CDS 50.0%
AAGATCAATGGACGGAGCGA+GGG - chr4_1:4718851-4718870 Msa0530660:CDS 50.0%
!! AGGGACTCTGAGATAGCGAT+GGG - chr4_1:4718870-4718889 Msa0530660:CDS 50.0%
CTGGCTGTCTTGCAGCTAAA+TGG + chr4_1:4718911-4718930 None:intergenic 50.0%
AGGAGTCATGAAGCATGCCA+AGG + chr4_1:4718980-4718999 None:intergenic 50.0%
CACTTGCTTCGCTATCCGAT+TGG - chr4_1:4719104-4719123 Msa0530660:intron 50.0%
CCGATTGGAGTTGCTAGTGA+AGG - chr4_1:4719119-4719138 Msa0530660:intron 50.0%
AAGTAGTGAGGATAGGAGGG+AGG + chr4_1:4719220-4719239 None:intergenic 50.0%
AAGTAGGCCCCGTTAGTGGA+CGG - chr4_1:4715539-4715558 Msa0530660:CDS 55.0%
!!! CAGCGCCATGGCGGATATTT+TGG - chr4_1:4716229-4716248 Msa0530660:CDS 55.0%
!! TGTAACAGATGGTGGGGCCA+TGG - chr4_1:4716270-4716289 Msa0530660:CDS 55.0%
! GGTGGGGCCATGGAGTTTTA+AGG - chr4_1:4716280-4716299 Msa0530660:CDS 55.0%
!!! GGGGCCATGGAGTTTTAAGG+TGG - chr4_1:4716283-4716302 Msa0530660:CDS 55.0%
TGGAGAAGGCAAGAGTGGGA+AGG - chr4_1:4716862-4716881 Msa0530660:CDS 55.0%
AGCATATGTGCCTGTCGAGG+AGG - chr4_1:4717019-4717038 Msa0530660:CDS 55.0%
CCATTCAAGACCTCCTCGAC+AGG + chr4_1:4717032-4717051 None:intergenic 55.0%
CCTGTCGAGGAGGTCTTGAA+TGG - chr4_1:4717029-4717048 Msa0530660:CDS 55.0%
CGAGGAGGTCTTGAATGGTG+AGG - chr4_1:4717034-4717053 Msa0530660:CDS 55.0%
ATGTCACGAAAGACCGCAGC+TGG - chr4_1:4717144-4717163 Msa0530660:CDS 55.0%
TGTCACGAAAGACCGCAGCT+GGG - chr4_1:4717145-4717164 Msa0530660:CDS 55.0%
CCTCCTAGAATCCCTCACCA+AGG + chr4_1:4717411-4717430 None:intergenic 55.0%
CCTTGGTGAGGGATTCTAGG+AGG - chr4_1:4717408-4717427 Msa0530660:CDS 55.0%
! GAGGGATTCTAGGAGGCCAA+AGG - chr4_1:4717415-4717434 Msa0530660:CDS 55.0%
! GATTCTAGGAGGCCAAAGGC+TGG - chr4_1:4717419-4717438 Msa0530660:CDS 55.0%
! TTCTAGGAGGCCAAAGGCTG+GGG - chr4_1:4717421-4717440 Msa0530660:CDS 55.0%
GCTGGGGGAGACACAACAAT+TGG - chr4_1:4717437-4717456 Msa0530660:CDS 55.0%
ACCGCCATCATCAGGATTGC+GGG + chr4_1:4717627-4717646 None:intergenic 55.0%
AAGCGATCGGTCCTTCAAGG+CGG + chr4_1:4717925-4717944 None:intergenic 55.0%
CCTTGAAGGACCGATCGCTT+GGG - chr4_1:4717925-4717944 Msa0530660:intron 55.0%
GAGCAACGATGGAGGAAGCA+AGG - chr4_1:4717965-4717984 Msa0530660:intron 55.0%
CAACGATGGAGGAAGCAAGG+TGG - chr4_1:4717968-4717987 Msa0530660:intron 55.0%
ATGGAGGAAGCAAGGTGGGA+AGG - chr4_1:4717973-4717992 Msa0530660:intron 55.0%
GGAAATGTTACCGGGGATGG+AGG + chr4_1:4718040-4718059 None:intergenic 55.0%
TCCGGAAATGTTACCGGGGA+TGG + chr4_1:4718043-4718062 None:intergenic 55.0%
CTGAAGATGCTGCGAGAGCT+GGG - chr4_1:4718137-4718156 Msa0530660:intron 55.0%
GCGAGAGCTGGGCTTATTAG+TGG - chr4_1:4718148-4718167 Msa0530660:intron 55.0%
TGTTGTCCCAATGTGGCCAG+AGG - chr4_1:4718399-4718418 Msa0530660:intron 55.0%
GTTGTCCCAATGTGGCCAGA+GGG - chr4_1:4718400-4718419 Msa0530660:intron 55.0%
! GGGTGTGCCAGAAAGTGCAT+CGG - chr4_1:4718420-4718439 Msa0530660:intron 55.0%
! GGACTGGCAGAGGAGAACAA+TGG - chr4_1:4718456-4718475 Msa0530660:intron 55.0%
GTTCTGGCACTCAGGGCAAA+GGG - chr4_1:4718499-4718518 Msa0530660:intron 55.0%
ACTCAGGGCAAAGGGAATCG+AGG - chr4_1:4718507-4718526 Msa0530660:intron 55.0%
!! GAGGGACTCTGAGATAGCGA+TGG - chr4_1:4718869-4718888 Msa0530660:CDS 55.0%
TCACTTGAGCACGACCTTCC+TGG - chr4_1:4719080-4719099 Msa0530660:intron 55.0%
AGCGAAGCAAGTGTCCAGGA+AGG + chr4_1:4719097-4719116 None:intergenic 55.0%
GGATAGCGAAGCAAGTGTCC+AGG + chr4_1:4719101-4719120 None:intergenic 55.0%
! TTTTCCCCGACACCAAGGCT+CGG - chr4_1:4719171-4719190 Msa0530660:intron 55.0%
!! AGAATCCGAGCCTTGGTGTC+GGG + chr4_1:4719179-4719198 None:intergenic 55.0%
! GAGAATCCGAGCCTTGGTGT+CGG + chr4_1:4719180-4719199 None:intergenic 55.0%
GACACCAAGGCTCGGATTCT+CGG - chr4_1:4719179-4719198 Msa0530660:intron 55.0%
TCAACCCCGCCGTCCACTAA+CGG + chr4_1:4715551-4715570 None:intergenic 60.0%
TATCCGCCATGGCGCTGCTA+TGG + chr4_1:4716226-4716245 None:intergenic 60.0%
!! TTGCAGATGGCGGACCATGG+TGG + chr4_1:4716334-4716353 None:intergenic 60.0%
!! CGATTGCAGATGGCGGACCA+TGG + chr4_1:4716337-4716356 None:intergenic 60.0%
!! TGAGCCTCATCGGTGTTGGG+AGG - chr4_1:4717313-4717332 Msa0530660:CDS 60.0%
TCTAGGAGGCCAAAGGCTGG+GGG - chr4_1:4717422-4717441 Msa0530660:CDS 60.0%
GTTGTGTCTCCCCCAGCCTT+TGG + chr4_1:4717434-4717453 None:intergenic 60.0%
TGCCCCCGCAATCCTGATGA+TGG - chr4_1:4717620-4717639 Msa0530660:CDS 60.0%
CGCCATCATCAGGATTGCGG+GGG + chr4_1:4717625-4717644 None:intergenic 60.0%
CCGCCATCATCAGGATTGCG+GGG + chr4_1:4717626-4717645 None:intergenic 60.0%
!! CCCCGCAATCCTGATGATGG+CGG - chr4_1:4717623-4717642 Msa0530660:CDS 60.0%
CGCTTATCCGACCTTCCACC+AGG + chr4_1:4717725-4717744 None:intergenic 60.0%
GGGGGTCTCGACCTTTGTGA+TGG - chr4_1:4717764-4717783 Msa0530660:CDS 60.0%
AAGGCGGTCCAAGGGAACCT+TGG - chr4_1:4717885-4717904 Msa0530660:intron 60.0%
AGCGATCGGTCCTTCAAGGC+GGG + chr4_1:4717924-4717943 None:intergenic 60.0%
GCCTTGAAGGACCGATCGCT+TGG - chr4_1:4717924-4717943 Msa0530660:intron 60.0%
CCCAAGCGATCGGTCCTTCA+AGG + chr4_1:4717928-4717947 None:intergenic 60.0%
CCAGCTCTCGCAGCATCTTC+AGG + chr4_1:4718139-4718158 None:intergenic 60.0%
CCTGAAGATGCTGCGAGAGC+TGG - chr4_1:4718136-4718155 Msa0530660:intron 60.0%
GCACACCCTCTGGCCACATT+GGG + chr4_1:4718408-4718427 None:intergenic 60.0%
! GCACTTTCTGGCACACCCTC+TGG + chr4_1:4718418-4718437 None:intergenic 60.0%
CGTTCTGGCACTCAGGGCAA+AGG - chr4_1:4718498-4718517 Msa0530660:intron 60.0%
CCATGGACTTGACCACGTGC+TGG + chr4_1:4718930-4718949 None:intergenic 60.0%
CCAGCACGTGGTCAAGTCCA+TGG - chr4_1:4718927-4718946 Msa0530660:intron 60.0%
GGAGATGTCACACAGCTGCC+TGG - chr4_1:4719140-4719159 Msa0530660:intron 60.0%
!! GAATCCGAGCCTTGGTGTCG+GGG + chr4_1:4719178-4719197 None:intergenic 60.0%
ACCAAGGCTCGGATTCTCGG+CGG - chr4_1:4719182-4719201 Msa0530660:intron 60.0%
! TAGGCCCCGTTAGTGGACGG+CGG - chr4_1:4715542-4715561 Msa0530660:CDS 65.0%
AACCCCGCCGTCCACTAACG+GGG + chr4_1:4715549-4715568 None:intergenic 65.0%
CAACCCCGCCGTCCACTAAC+GGG + chr4_1:4715550-4715569 None:intergenic 65.0%
! AGTGGACGGCGGGGTTGATC+AGG - chr4_1:4715553-4715572 Msa0530660:CDS 65.0%
! GTGGACGGCGGGGTTGATCA+GGG - chr4_1:4715554-4715573 Msa0530660:CDS 65.0%
! ACGGCGGGGTTGATCAGGGT+TGG - chr4_1:4715558-4715577 Msa0530660:CDS 65.0%
TGTCGGCCATAGCAGCGCCA+TGG - chr4_1:4716217-4716236 Msa0530660:CDS 65.0%
AAAGACCGCAGCTGGGCTCG+AGG - chr4_1:4717152-4717171 Msa0530660:CDS 65.0%
GAATGCCTCGAGCCCAGCTG+CGG + chr4_1:4717160-4717179 None:intergenic 65.0%
GGCACACCCTCTGGCCACAT+TGG + chr4_1:4718409-4718428 None:intergenic 65.0%
GCTGCAAGACAGCCAGCACG+TGG - chr4_1:4718915-4718934 Msa0530660:intron 65.0%
! AGGCCCCGTTAGTGGACGGC+GGG - chr4_1:4715543-4715562 Msa0530660:CDS 70.0%
CGGCCATAGCAGCGCCATGG+CGG - chr4_1:4716220-4716239 Msa0530660:CDS 70.0%
GCCGCCGAGAATCCGAGCCT+TGG + chr4_1:4719186-4719205 None:intergenic 70.0%
! GGCCCCGTTAGTGGACGGCG+GGG - chr4_1:4715544-4715563 Msa0530660:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 4715162 4719459 4715162 ID=Msa0530660;Name=Msa0530660
chr4_1 mRNA 4715162 4719459 4715162 ID=Msa0530660-mRNA-1;Parent=Msa0530660;Name=Msa0530660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=167|1|0.75|1|0.66|0.5|4|218|808
chr4_1 exon 4715162 4715813 4715162 ID=Msa0530660-mRNA-1:exon:1440;Parent=Msa0530660-mRNA-1
chr4_1 exon 4715930 4717829 4715930 ID=Msa0530660-mRNA-1:exon:1439;Parent=Msa0530660-mRNA-1
chr4_1 exon 4718834 4718933 4718834 ID=Msa0530660-mRNA-1:exon:1438;Parent=Msa0530660-mRNA-1
chr4_1 exon 4719300 4719459 4719300 ID=Msa0530660-mRNA-1:exon:1437;Parent=Msa0530660-mRNA-1
chr4_1 five_prime_UTR 4719300 4719459 4719300 ID=Msa0530660-mRNA-1:five_prime_utr;Parent=Msa0530660-mRNA-1
chr4_1 five_prime_UTR 4718927 4718933 4718927 ID=Msa0530660-mRNA-1:five_prime_utr;Parent=Msa0530660-mRNA-1
chr4_1 CDS 4718834 4718926 4718834 ID=Msa0530660-mRNA-1:cds;Parent=Msa0530660-mRNA-1
chr4_1 CDS 4715930 4717829 4715930 ID=Msa0530660-mRNA-1:cds;Parent=Msa0530660-mRNA-1
chr4_1 CDS 4715380 4715813 4715380 ID=Msa0530660-mRNA-1:cds;Parent=Msa0530660-mRNA-1
chr4_1 three_prime_UTR 4715162 4715379 4715162 ID=Msa0530660-mRNA-1:three_prime_utr;Parent=Msa0530660-mRNA-1
Gene Sequence

>Msa0530660

ATGGCACAAATTCATCTTCATGGTACTCTTCATGCTACTATCTATGAGGTTGATAAGCTTAATGCTGGTGGTGGTGGAAATTTCCTCAGCATGATCAGGCAAAACATTGAGGAAACTGTTGGTCTTGGAAAGGGAGTTACTAAACTCTATGCTACCATTGATTTGGAGAAGGCAAGAGTGGGAAGGACAAGAATTATTGAAAATGAGCATACTAATCCCAAATGGTACGAGTCTTTTCACATTTACTGTGCTCATATGGCTTCAGATATCATATTCACTGTGAAAGATGATAATCCTGTTGGAGCAACTTTAATCGGAAGAGCATATGTGCCTGTCGAGGAGGTCTTGAATGGTGAGGAAATTGATAGGTGGGTGGAAATTTTGGACACTGAAAAAAACCCGATACAAGAGGGTTCGAAGATCCATGTGAAGCTGCAATATTTTGATGTCACGAAAGACCGCAGCTGGGCTCGAGGCATTCAAAGCGCTAAATTTCCTGGAGTTCCGTATACTTTCTTCTCACAGAGGAAAGGATGTAAGGTATCTCTTTACCAAGATTCTCATGTGCCGGATAATTTCATCCCTAAAATACCACTTTCTGGTGGCAAGACTTATGAGCCTCATCGGTGTTGGGAGGATATTTATGATGCCATCACCAATGCAAAACACATGATATACATTACCGGTTGGTCTGTTTATACCGAAATTTCCTTGGTGAGGGATTCTAGGAGGCCAAAGGCTGGGGGAGACACAACAATTGGTGAGCTTCTAAAGAAAAAGTCTAGTGAAGGTGTTAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCGGTTGGTTTGTTGAAAAAGGATGGATTGATGGCTACTCATGACGAAGAAACCGCACAGTTCTTTGAAGGTACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGATGATGGCGGTAGCATCATTCAGGATTTACAAGTTTCCACCATGTTTACTCATCACCAGAAGATTGTGGTTGTGGACAGTGAATTACCTGGTGGAAGGTCGGATAAGCGAAGAATTGTGAGTTTTGTTGGGGGTCTCGACCTTTGTGATGGAAGATATGATACTCCATTCCACTCACTTTTTAGAACTCTTGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCAGGTGCTGCAATCACAAAAGGCGGTCCAAGGGAACCTTGGCATGACATTCATTCCCGCCTTGAAGGACCGATCGCTTGGGATGTGTTGTTTAACTTTGAGCAACGATGGAGGAAGCAAGGTGGGAAGGATTTACTTGTCTCTCTGAGGGAGCTTGAAGATTCTATTATTCCTCCATCCCCGGTAACATTTCCGGATGATCACGAGACATGGAATGTTCAGCTGTTTAGATCTATTGATGGTGGGGCTGCTTTTGGGTTCCCAGAAACTCCTGAAGATGCTGCGAGAGCTGGGCTTATTAGTGGAAAGGATAATATCATCGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGGCGTGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCTTGGAGTGGTGAGGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTCATCCCAAAGGAACTTTCACTTAAGATTATGAGTAAGATTGAAGCCGGGGAAAAGTTCACTGTGTACGTTGTTGTCCCAATGTGGCCAGAGGGTGTGCCAGAAAGTGCATCGGTTCAAGCAATATTGGACTGGCAGAGGAGAACAATGGAGATGATGTATAAGGATATCGTTCTGGCACTCAGGGCAAAGGGAATCGAGGAAGATCCTCGGAATTATTTGACGTTCTTCTGCCTCGGTAATCGGGAAGTAAAGAAACAAGGAGAGTACGAGCCTTCTGAACAACCAGAACCTGATTCAGATTACGAGAGAGCCCAACAGTCCCGACGTTTCATGATCTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCGTTGGATCTGCCAACATCAACCAAAGATCAATGGACGGAGCGAGGGACTCTGAGATAGCGATGGGAGCCTATCAGCCCTACCATTTAGCTGCAAGACAGCCAGCACGTGGTCAAGTCCATGGTTTTCGCATGGCATTATGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTTCATCCAGAAAATCAAGAATGTATCCGTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTCTATTCAAATGATTCACTTGAGCACGACCTTCCTGGACACTTGCTTCGCTATCCGATTGGAGTTGCTAGTGAAGGAGATGTCACACAGCTGCCTGGATTTGAATTTTTCCCCGACACCAAGGCTCGGATTCTCGGCGGCAAAGCTGATTACCTCCCTCCTATCCTCACTACTTAG
Protein sequence

>Msa0530660

MAQIHLHGTLHATIYEVDKLNAGGGGNFLSMIRQNIEETVGLGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWYESFHIYCAHMASDIIFTVKDDNPVGATLIGRAYVPVEEVLNGEEIDRWVEILDTEKNPIQEGSKIHVKLQYFDVTKDRSWARGIQSAKFPGVPYTFFSQRKGCKVSLYQDSHVPDNFIPKIPLSGGKTYEPHRCWEDIYDAITNAKHMIYITGWSVYTEISLVRDSRRPKAGGDTTIGELLKKKSSEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTDVHCVLCPRNPDDGGSIIQDLQVSTMFTHHQKIVVVDSELPGGRSDKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDSIIPPSPVTFPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSGEDIKPEDIGALHLIPKELSLKIMSKIEAGEKFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIVLALRAKGIEEDPRNYLTFFCLGNREVKKQGEYEPSEQPEPDSDYERAQQSRRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLAARQPARGQVHGFRMALWYEHLGMLHDSFLHPENQECIRKVNQIADKYWDLYSNDSLEHDLPGHLLRYPIGVASEGDVTQLPGFEFFPDTKARILGGKADYLPPILTT*