AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0260980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260980 MtrunA17_Chr2g0322861 96.319 326 12 0 1 326 62 387 0.0 663
Msa0260980 MtrunA17_Chr4g0024121 70.732 328 91 4 1 325 1 326 2.31e-176 491
Msa0260980 MtrunA17_Chr7g0268501 53.495 329 140 6 1 325 1 320 4.20e-119 345
Msa0260980 MtrunA17_Chr7g0268521 53.495 329 140 6 1 325 1 320 4.20e-119 345
Msa0260980 MtrunA17_Chr3g0128061 48.428 318 159 5 12 326 12 327 8.01e-97 289
Msa0260980 MtrunA17_Chr5g0402581 45.912 318 166 5 12 325 11 326 5.21e-96 287
Msa0260980 MtrunA17_Chr5g0402571 44.937 316 170 4 12 325 13 326 1.88e-94 283
Msa0260980 MtrunA17_Chr5g0404721 45.946 333 169 6 3 326 1 331 5.76e-92 277
Msa0260980 MtrunA17_Chr2g0279041 45.312 320 167 5 10 325 10 325 7.94e-92 276
Msa0260980 MtrunA17_Chr2g0292241 45.455 319 168 5 12 326 15 331 2.37e-91 276
Msa0260980 MtrunA17_Chr2g0292261 46.226 318 165 5 12 325 15 330 4.67e-91 275
Msa0260980 MtrunA17_Chr4g0070951 44.037 327 175 5 4 325 6 329 1.00e-90 274
Msa0260980 MtrunA17_Chr5g0405991 47.634 317 152 8 13 325 10 316 3.70e-90 272
Msa0260980 MtrunA17_Chr2g0292181 45.283 318 168 5 12 325 24 339 6.42e-90 273
Msa0260980 MtrunA17_Chr8g0371381 46.078 306 157 6 21 325 21 319 7.24e-89 269
Msa0260980 MtrunA17_Chr1g0157051 44.620 316 166 7 12 324 8 317 1.36e-88 268
Msa0260980 MtrunA17_Chr2g0292211 44.062 320 173 5 10 325 24 341 1.39e-88 270
Msa0260980 MtrunA17_Chr8g0372601 44.728 313 170 3 15 325 19 330 2.26e-88 268
Msa0260980 MtrunA17_Chr2g0291751 44.688 320 166 6 10 325 18 330 3.37e-88 268
Msa0260980 MtrunA17_Chr2g0299691 44.615 325 171 5 7 325 37 358 4.92e-87 265
Msa0260980 MtrunA17_Chr2g0292251 44.337 309 166 5 21 325 23 329 1.71e-86 264
Msa0260980 MtrunA17_Chr7g0258811 43.614 321 173 6 10 325 54 371 2.98e-86 264
Msa0260980 MtrunA17_Chr1g0175561 42.038 314 175 5 17 325 15 326 4.63e-86 262
Msa0260980 MtrunA17_Chr2g0292101 43.574 319 173 6 12 325 10 326 1.52e-85 261
Msa0260980 MtrunA17_Chr1g0204011 43.750 320 173 6 8 325 8 322 1.54e-85 260
Msa0260980 MtrunA17_Chr4g0063671 43.849 317 170 5 13 325 8 320 2.63e-85 259
Msa0260980 MtrunA17_Chr3g0106921 43.034 323 170 7 8 325 7 320 5.61e-85 259
Msa0260980 MtrunA17_Chr3g0129051 43.354 316 166 6 10 321 12 318 5.12e-84 256
Msa0260980 MtrunA17_Chr2g0292091 42.415 323 179 6 8 325 5 325 5.15e-84 257
Msa0260980 MtrunA17_Chr6g0460711 42.587 317 170 6 12 325 7 314 1.75e-83 255
Msa0260980 MtrunA17_Chr1g0164891 46.732 306 153 7 27 325 90 392 5.20e-83 256
Msa0260980 MtrunA17_Chr2g0292271 44.481 308 165 5 22 325 25 330 1.12e-82 254
Msa0260980 MtrunA17_Chr2g0320071 43.631 314 166 5 14 325 13 317 1.16e-82 253
Msa0260980 MtrunA17_Chr4g0013171 42.368 321 172 7 9 325 10 321 1.70e-82 252
Msa0260980 MtrunA17_Chr5g0432441 43.750 320 165 7 12 325 16 326 5.16e-82 251
Msa0260980 MtrunA17_Chr2g0320061 42.812 320 171 6 9 325 8 318 5.67e-81 248
Msa0260980 MtrunA17_Chr1g0188431 39.809 314 176 6 13 325 26 327 6.16e-81 249
Msa0260980 MtrunA17_Chr2g0292111 42.767 318 176 5 12 325 15 330 7.68e-81 249
Msa0260980 MtrunA17_Chr2g0320051 42.633 319 173 4 9 325 8 318 1.13e-80 248
Msa0260980 MtrunA17_Chr2g0320101 42.006 319 174 5 9 325 8 317 1.20e-80 248
Msa0260980 MtrunA17_Chr7g0254201 41.639 305 165 6 24 325 18 312 1.58e-80 247
Msa0260980 MtrunA17_Chr1g0194271 42.121 330 172 7 13 325 13 340 2.14e-80 248
Msa0260980 MtrunA17_Chr1g0194151 43.210 324 170 8 13 325 13 333 1.15e-79 246
Msa0260980 MtrunA17_Chr2g0292151 42.320 319 176 6 12 325 15 330 1.28e-79 246
Msa0260980 MtrunA17_Chr7g0225221 39.812 319 184 4 9 325 8 320 2.02e-79 244
Msa0260980 MtrunA17_Chr4g0013181 43.667 300 156 7 30 325 63 353 4.51e-79 245
Msa0260980 MtrunA17_Chr5g0401431 41.956 317 177 5 13 324 14 328 7.62e-79 243
Msa0260980 MtrunA17_Chr2g0292291 42.320 319 177 6 12 325 16 332 9.20e-79 244
Msa0260980 MtrunA17_Chr2g0296621 43.522 301 160 6 26 325 50 341 1.16e-78 243
Msa0260980 MtrunA17_Chr4g0043391 40.379 317 181 6 12 325 13 324 1.45e-78 243
Msa0260980 MtrunA17_Chr7g0254231 41.447 304 166 6 24 326 20 312 2.20e-78 241
Msa0260980 MtrunA17_Chr3g0114451 41.796 323 173 6 9 325 5 318 2.20e-78 242
Msa0260980 MtrunA17_Chr2g0320091 41.875 320 174 6 9 325 8 318 9.17e-78 240
Msa0260980 MtrunA17_Chr2g0278671 43.408 311 162 6 22 325 20 323 9.91e-78 240
Msa0260980 MtrunA17_Chr1g0213061 41.509 318 173 6 12 325 13 321 4.44e-77 239
Msa0260980 MtrunA17_Chr4g0038171 40.063 317 182 6 12 325 10 321 5.62e-77 238
Msa0260980 MtrunA17_Chr4g0013201 40.952 315 175 5 13 325 33 338 6.15e-77 239
Msa0260980 MtrunA17_Chr1g0155611 44.667 300 160 5 30 325 50 347 9.26e-77 239
Msa0260980 MtrunA17_Chr7g0244461 40.000 315 177 6 13 325 8 312 1.90e-76 236
Msa0260980 MtrunA17_Chr4g0076211 43.478 299 160 6 28 325 43 333 2.73e-76 237
Msa0260980 MtrunA17_Chr4g0068621 42.532 308 168 7 22 325 34 336 6.39e-76 236
Msa0260980 MtrunA17_Chr7g0244451 40.952 315 175 5 13 325 11 316 1.16e-75 235
Msa0260980 MtrunA17_Chr3g0129061 42.089 316 170 6 10 321 12 318 1.32e-75 235
Msa0260980 MtrunA17_Chr6g0477071 39.697 330 181 10 1 325 26 342 1.40e-75 235
Msa0260980 MtrunA17_Chr4g0038151 39.623 318 185 5 10 325 9 321 1.17e-74 232
Msa0260980 MtrunA17_Chr4g0038161 39.185 319 181 6 12 325 10 320 2.14e-74 232
Msa0260980 MtrunA17_Chr4g0046131 40.523 306 173 6 25 323 41 344 2.58e-74 232
Msa0260980 MtrunA17_Chr5g0432351 43.373 332 170 11 1 325 1 321 2.81e-74 231
Msa0260980 MtrunA17_Chr5g0432341 43.373 332 170 11 1 325 1 321 3.98e-74 231
Msa0260980 MtrunA17_Chr5g0400331 41.694 307 163 6 30 325 30 331 1.52e-73 230
Msa0260980 MtrunA17_Chr1g0148021 39.937 318 184 5 13 325 13 328 1.88e-72 227
Msa0260980 MtrunA17_Chr4g0013721 40.323 310 178 6 19 326 93 397 2.17e-72 229
Msa0260980 MtrunA17_Chr3g0129041 42.767 318 168 7 13 325 14 322 4.69e-72 226
Msa0260980 MtrunA17_Chr2g0320031 38.750 320 185 5 9 325 8 319 1.50e-71 224
Msa0260980 MtrunA17_Chr5g0438021 40.373 322 174 8 10 325 16 325 1.63e-71 224
Msa0260980 MtrunA17_Chr8g0364291 37.421 318 192 6 14 326 10 325 6.00e-71 223
Msa0260980 MtrunA17_Chr4g0072091 40.328 305 174 5 25 325 23 323 7.18e-71 223
Msa0260980 MtrunA17_Chr4g0013191 39.103 312 178 6 18 325 37 340 8.07e-71 223
Msa0260980 MtrunA17_Chr5g0432331 40.181 331 182 10 1 325 32 352 8.89e-70 221
Msa0260980 MtrunA17_Chr4g0053871 39.432 317 180 6 13 324 14 323 1.19e-69 219
Msa0260980 MtrunA17_Chr4g0013821 38.562 306 181 6 22 325 24 324 1.91e-69 220
Msa0260980 MtrunA17_Chr2g0329641 37.538 325 190 6 10 325 15 335 2.13e-69 219
Msa0260980 MtrunA17_Chr1g0197411 35.494 324 199 6 10 325 9 330 2.66e-69 219
Msa0260980 MtrunA17_Chr2g0279061 45.560 259 134 4 70 325 12 266 7.89e-69 216
Msa0260980 MtrunA17_Chr3g0107881 39.815 324 180 9 9 325 9 324 1.67e-68 217
Msa0260980 MtrunA17_Chr7g0224371 40.940 298 164 6 30 325 35 322 1.99e-68 216
Msa0260980 MtrunA17_Chr6g0467161 38.462 312 176 7 20 325 35 336 1.18e-67 215
Msa0260980 MtrunA17_Chr3g0106901 40.125 319 179 6 9 325 15 323 1.34e-67 214
Msa0260980 MtrunA17_Chr5g0421411 40.000 280 157 9 54 325 9 285 7.92e-67 211
Msa0260980 MtrunA17_Chr3g0136751 40.125 319 185 4 9 325 8 322 8.35e-67 212
Msa0260980 MtrunA17_Chr2g0316481 36.858 331 176 5 24 322 74 403 3.61e-64 208
Msa0260980 MtrunA17_Chr2g0316791 36.858 331 176 5 24 322 74 403 1.47e-63 206
Msa0260980 MtrunA17_Chr6g0467121 39.803 304 165 8 26 325 74 363 2.09e-62 203
Msa0260980 MtrunA17_Chr2g0311251 36.336 333 178 4 24 324 9 339 3.24e-62 201
Msa0260980 MtrunA17_Chr2g0316831 36.254 331 178 5 24 322 110 439 8.63e-62 203
Msa0260980 MtrunA17_Chr2g0316191 36.145 332 178 5 24 322 74 404 1.34e-61 201
Msa0260980 MtrunA17_Chr2g0311241 32.976 373 177 4 24 324 58 429 2.16e-59 196
Msa0260980 MtrunA17_Chr6g0467251 35.526 304 183 7 26 326 36 329 2.82e-58 191
Msa0260980 MtrunA17_Chr6g0451571 35.484 310 189 8 22 325 30 334 9.77e-57 187
Msa0260980 MtrunA17_Chr1g0181511 36.928 306 182 5 24 325 25 323 1.08e-56 186
Msa0260980 MtrunA17_Chr4g0074851 35.220 318 193 6 13 325 19 328 2.52e-54 181
Msa0260980 MtrunA17_Chr1g0181431 34.967 306 188 5 24 325 25 323 2.69e-53 177
Msa0260980 MtrunA17_Chr5g0413051 34.628 309 193 6 24 325 71 377 5.62e-53 178
Msa0260980 MtrunA17_Chr4g0075241 32.248 307 195 5 25 325 28 327 3.10e-50 169
Msa0260980 MtrunA17_Chr1g0181481 34.967 306 188 5 24 325 25 323 3.52e-50 169
Msa0260980 MtrunA17_Chr4g0004591 31.034 319 160 5 26 324 77 355 9.17e-48 164
Msa0260980 MtrunA17_Chr2g0316811 38.750 240 123 4 24 240 48 286 3.10e-46 159
Msa0260980 MtrunA17_Chr5g0432401 34.328 335 159 10 1 324 1 285 9.51e-46 157
Msa0260980 MtrunA17_Chr2g0292281 43.396 212 106 5 116 325 17 216 1.06e-44 152
Msa0260980 MtrunA17_Chr2g0316141 35.069 288 136 7 72 326 11 280 3.66e-41 144
Msa0260980 MtrunA17_Chr2g0316181 35.069 288 136 7 72 326 11 280 3.66e-41 144
Msa0260980 MtrunA17_Chr3g0114461 38.579 197 111 4 130 325 5 192 8.13e-37 130
Msa0260980 MtrunA17_Chr3g0114491 47.009 117 60 2 17 131 9 125 6.92e-27 103
Msa0260980 MtrunA17_Chr1g0181491 47.273 110 56 2 24 132 10 118 1.30e-25 100
Msa0260980 MtrunA17_Chr5g0432321 41.600 125 64 3 145 269 17 132 3.70e-23 93.2
Msa0260980 MtrunA17_Chr7g0254181 44.231 104 55 1 87 190 22 122 1.56e-22 92.0
Msa0260980 MtrunA17_Chr6g0468731 58.209 67 26 1 65 131 22 86 3.14e-21 86.7
Msa0260980 MtrunA17_Chr1g0196191 56.164 73 31 1 61 132 20 92 1.46e-18 81.3
Msa0260980 MtrunA17_Chr7g0268491 43.373 83 45 1 243 325 17 97 2.18e-17 76.3
Msa0260980 MtrunA17_Chr7g0254171 39.252 107 60 2 71 176 3 105 1.24e-16 75.5
Msa0260980 MtrunA17_Chr4g0013811 47.297 74 39 0 134 207 5 78 2.54e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260980 AT1G05260.1 68.608 309 97 0 18 326 18 326 5.79e-164 460
Msa0260980 AT4G11290.1 67.722 316 100 1 12 325 11 326 1.15e-162 457
Msa0260980 AT3G21770.1 67.657 303 98 0 21 323 24 326 1.58e-157 444
Msa0260980 AT5G15180.1 54.573 328 144 4 1 325 4 329 3.17e-125 362
Msa0260980 AT3G01190.1 55.414 314 135 4 13 325 12 321 1.55e-118 345
Msa0260980 AT1G05240.1 50.993 302 144 4 26 325 26 325 3.70e-105 311
Msa0260980 AT1G05250.1 50.993 302 144 4 26 325 26 325 3.70e-105 311
Msa0260980 AT2G18150.1 46.844 301 155 5 29 326 39 337 1.36e-93 281
Msa0260980 AT4G36430.1 44.444 315 170 5 15 326 19 331 1.28e-91 276
Msa0260980 AT5G64120.1 45.485 299 157 5 27 325 36 328 1.58e-90 273
Msa0260980 AT5G17820.1 43.034 323 174 4 3 325 1 313 7.99e-90 271
Msa0260980 AT2G39040.1 48.553 311 149 8 23 325 43 350 2.62e-89 271
Msa0260980 AT5G17820.2 43.210 324 174 4 2 325 53 366 2.75e-89 271
Msa0260980 AT5G14130.1 43.887 319 174 4 9 325 15 330 3.16e-89 270
Msa0260980 AT3G03670.1 42.857 315 177 3 12 325 9 321 6.90e-89 269
Msa0260980 AT5G14130.2 43.887 319 174 4 9 325 56 371 9.36e-89 270
Msa0260980 AT5G66390.1 45.000 320 171 5 10 326 17 334 6.56e-88 267
Msa0260980 AT2G18140.1 44.333 300 162 5 30 326 39 336 1.56e-87 266
Msa0260980 AT2G41480.1 42.593 324 177 6 7 325 9 328 3.84e-87 265
Msa0260980 AT5G06730.1 40.979 327 183 6 7 325 10 334 2.08e-86 264
Msa0260980 AT5G39580.1 43.175 315 171 7 12 325 12 319 5.73e-86 261
Msa0260980 AT3G50990.1 42.857 329 180 4 5 326 15 342 1.78e-85 261
Msa0260980 AT2G38390.1 43.119 327 176 8 7 325 9 333 2.47e-85 261
Msa0260980 AT1G49570.1 44.262 305 163 6 24 323 46 348 1.34e-84 259
Msa0260980 AT5G06720.1 41.824 318 179 5 12 325 18 333 3.57e-84 258
Msa0260980 AT2G38380.1 42.508 327 178 8 7 325 9 333 5.46e-83 255
Msa0260980 AT5G42180.1 42.500 320 166 8 12 324 8 316 2.44e-82 252
Msa0260980 AT5G51890.1 45.455 319 161 9 13 325 11 322 2.48e-82 252
Msa0260980 AT1G77100.1 43.506 308 162 5 22 325 20 319 6.57e-81 249
Msa0260980 AT1G44970.1 43.910 312 169 5 18 325 37 346 3.88e-80 248
Msa0260980 AT3G32980.1 40.439 319 180 7 16 326 19 335 1.76e-79 246
Msa0260980 AT5G19890.1 41.615 322 176 7 10 326 14 328 5.80e-79 244
Msa0260980 AT4G08770.1 41.456 316 177 6 17 326 15 328 7.86e-79 244
Msa0260980 AT2G24800.1 41.639 305 171 4 24 325 29 329 2.36e-78 243
Msa0260980 AT3G49110.1 41.250 320 178 7 13 326 22 337 3.69e-78 243
Msa0260980 AT2G18980.1 41.159 328 183 6 3 325 1 323 4.29e-78 241
Msa0260980 AT3G49120.1 40.881 318 180 6 15 326 21 336 7.89e-78 242
Msa0260980 AT4G33420.1 41.456 316 171 7 12 325 22 325 1.26e-77 240
Msa0260980 AT4G26010.1 40.823 316 171 7 13 326 9 310 1.94e-77 239
Msa0260980 AT4G26010.2 40.367 327 177 8 2 326 28 338 3.11e-77 240
Msa0260980 AT4G33420.2 41.456 316 171 7 12 325 69 372 8.10e-77 240
Msa0260980 AT4G25980.1 41.368 307 171 5 24 325 24 326 8.65e-77 238
Msa0260980 AT5G58390.1 41.250 320 172 7 12 325 7 316 9.02e-77 238
Msa0260980 AT4G08780.1 41.158 311 175 6 22 326 20 328 2.62e-76 238
Msa0260980 AT5G64110.1 38.415 328 190 5 5 325 8 330 1.01e-75 236
Msa0260980 AT5G05340.1 40.850 306 170 5 23 325 27 324 9.50e-75 233
Msa0260980 AT5G64100.1 38.973 331 179 7 10 325 9 331 3.27e-74 232
Msa0260980 AT4G16270.1 40.924 303 172 6 26 325 50 348 1.21e-73 231
Msa0260980 AT1G71695.1 43.421 304 160 7 26 325 44 339 1.81e-73 231
Msa0260980 AT1G14550.1 40.373 322 178 8 10 325 8 321 4.64e-73 229
Msa0260980 AT1G14540.1 39.062 320 183 7 10 325 4 315 2.31e-72 227
Msa0260980 AT5G19880.1 40.187 321 183 6 12 325 11 329 4.30e-72 226
Msa0260980 AT2G35380.1 36.873 339 196 6 1 325 1 335 4.35e-72 226
Msa0260980 AT4G31760.1 40.323 310 173 6 21 325 24 326 4.68e-72 226
Msa0260980 AT5G58400.1 39.009 323 183 7 4 321 8 321 9.46e-72 225
Msa0260980 AT4G37530.1 40.645 310 175 6 22 325 23 329 6.46e-71 223
Msa0260980 AT5G22410.1 38.415 328 186 8 3 321 1 321 7.39e-71 223
Msa0260980 AT4G33870.1 35.632 348 186 5 11 322 53 398 2.45e-69 222
Msa0260980 AT1G34510.1 37.730 326 185 8 3 326 1 310 6.36e-69 218
Msa0260980 AT5G67400.1 38.050 318 190 5 13 325 14 329 6.69e-69 218
Msa0260980 AT3G49960.1 37.736 318 191 5 13 325 14 329 1.25e-68 218
Msa0260980 AT4G37520.1 39.610 308 177 6 24 325 25 329 2.31e-68 217
Msa0260980 AT2G34060.1 37.864 309 185 4 19 321 35 342 2.73e-68 217
Msa0260980 AT4G30170.1 38.562 306 179 5 24 325 25 325 3.98e-68 216
Msa0260980 AT1G68850.1 36.156 307 188 6 26 325 30 335 6.10e-67 213
Msa0260980 AT4G37520.2 39.610 308 174 7 24 325 25 326 1.10e-66 213
Msa0260980 AT2G22420.1 37.224 317 191 7 12 325 8 319 1.74e-66 212
Msa0260980 AT1G30870.1 39.274 303 175 5 26 326 51 346 6.32e-66 211
Msa0260980 AT5G24070.1 35.207 338 192 8 8 325 5 335 4.90e-64 206
Msa0260980 AT4G17690.1 37.705 305 177 7 26 325 26 322 3.23e-63 203
Msa0260980 AT5G47000.1 36.585 328 185 9 12 326 14 331 5.34e-62 201
Msa0260980 AT2G43480.1 35.556 315 192 5 17 325 26 335 7.99e-62 200
Msa0260980 AT4G37530.2 40.000 260 150 4 22 276 23 281 1.16e-60 196
Msa0260980 AT5G40150.1 36.334 311 189 4 18 325 24 328 7.91e-60 195
Msa0260980 AT1G24110.1 34.743 331 203 6 1 326 1 323 2.49e-59 193
Msa0260980 AT3G28200.1 35.922 309 186 6 21 325 16 316 1.60e-57 188
Msa0260980 AT4G21960.1 34.356 326 195 7 12 325 9 327 2.82e-55 183
Msa0260980 AT3G17070.1 33.882 304 195 5 26 325 38 339 2.09e-52 176
Msa0260980 AT2G35380.2 37.751 249 142 4 86 325 3 247 3.24e-51 170
Msa0260980 AT4G25980.2 49.405 168 83 2 24 191 69 234 2.27e-50 169
Msa0260980 AT5G39580.2 46.961 181 92 3 12 192 12 188 4.71e-50 167
Msa0260980 AT2G37130.1 33.876 307 191 6 24 325 28 327 1.88e-49 168
Msa0260980 AT2G37130.2 33.993 303 188 6 28 325 1 296 1.43e-48 165
Msa0260980 AT2G24800.2 45.181 166 89 1 24 189 29 192 1.85e-44 152
Msa0260980 AT3G17070.2 32.246 276 180 6 54 325 4 276 1.39e-39 140
Msa0260980 AT3G42570.1 37.168 113 69 2 81 191 37 149 8.21e-16 73.9

Find 67 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAATCAATGGAGAAAA+TGG 0.079582 2_2:+59099388 Msa0260980:CDS
AAAGGTTGGTTACATTAATT+AGG 0.185639 2_2:+59099708 Msa0260980:three_prime_UTR
TTGAAATAAGGATCCATTTA+AGG 0.193537 2_2:-59099812 None:intergenic
CCTCCAAATCTTACTGTTAG+AGG 0.255087 2_2:+59098456 Msa0260980:CDS
TAATATATGTGTTGTGTAAA+AGG 0.256979 2_2:+59099690 Msa0260980:three_prime_UTR
CTTGATTGGCAAAGAGAGTT+TGG 0.269943 2_2:-59098842 None:intergenic
ACTTTCATGATTGCTTTGTT+AGG 0.271511 2_2:+59098278 Msa0260980:CDS
TCTTACACTTGAATGTCTTT+AGG 0.278429 2_2:-59099172 None:intergenic
AAGCAAGGTGTATCCTTAAA+TGG 0.294160 2_2:+59099799 Msa0260980:three_prime_UTR
GCAATGATTAGTTCAGCTTT+TGG 0.305474 2_2:-59098193 None:intergenic
AGTTTGGAGGGTGGAGAAGT+TGG 0.319139 2_2:-59098826 None:intergenic
TCAAATGTGTTTCGACTTCC+CGG 0.338461 2_2:-59099230 None:intergenic
GAAACTAATGTATTGAAATA+AGG 0.348083 2_2:-59099824 None:intergenic
TTCCAGTAAAATTGTATAAA+CGG 0.349083 2_2:-59099106 None:intergenic
CTTTCATGATTGCTTTGTTA+GGG 0.352765 2_2:+59098279 Msa0260980:CDS
GGAAAGTTCCAACAGGTAGA+AGG 0.373285 2_2:+59098748 Msa0260980:CDS
GATTTCAGGGTGGTCCATAT+TGG 0.381350 2_2:+59098727 Msa0260980:intron
ATATATTATTGACTCTGCTT+TGG 0.382069 2_2:-59099675 None:intergenic
CCTGTTGGAACTTTCCAATA+TGG 0.384950 2_2:-59098741 None:intergenic
AAGCCTCTAACAGTAAGATT+TGG 0.388544 2_2:-59098459 None:intergenic
CAGGGTCACAAGGTGTGATT+AGG 0.404815 2_2:+59099429 Msa0260980:CDS
CAATACTACAATAGTCGAAA+TGG 0.408185 2_2:+59099205 Msa0260980:CDS
AGTCGAAACACATTTGATCT+TGG 0.416537 2_2:+59099236 Msa0260980:CDS
CTTGTGACTCAATTCCTTCA+AGG 0.417393 2_2:+59099338 Msa0260980:CDS
GAGGGTGGAGAAGTTGGAAA+AGG 0.426836 2_2:-59098820 None:intergenic
AAGGTTGGTTACATTAATTA+GGG 0.429714 2_2:+59099709 Msa0260980:three_prime_UTR
AAATCAGTGTAATTACTTCA+AGG 0.442898 2_2:+59098099 Msa0260980:CDS
CAAACTCTCTTTGCCAATCA+AGG 0.450028 2_2:+59098843 Msa0260980:CDS
TGCTGAATTTGCAAAATCAA+TGG 0.452311 2_2:+59099379 Msa0260980:CDS
AGGGTGGAGAAGTTGGAAAA+GGG 0.456129 2_2:-59098819 None:intergenic
TGTGGCTGCAATAGAGTCTC+TGG 0.459357 2_2:-59098565 None:intergenic
GCAAAATCAATGGAGAAAAT+GGG 0.466453 2_2:+59099389 Msa0260980:CDS
TGGAGTCGTATCGAATTTGC+TGG 0.467430 2_2:+59098773 Msa0260980:CDS
GTTGGTTTGTTGAGTTCAGA+AGG 0.478806 2_2:-59098416 None:intergenic
GGACAAGTTAAAGTTAAGAC+AGG 0.485701 2_2:+59099410 Msa0260980:CDS
GAGAAGTTGGAAAAGGGAGC+AGG 0.486453 2_2:-59098813 None:intergenic
CCTCTAACAGTAAGATTTGG+AGG 0.486565 2_2:-59098456 None:intergenic
AAAGACTTAGTCCTCCTCTC+TGG 0.492430 2_2:+59098876 Msa0260980:CDS
CCATATTGGAAAGTTCCAAC+AGG 0.513974 2_2:+59098741 Msa0260980:CDS
ATATGTGTTGTGTAAAAGGT+TGG 0.517566 2_2:+59099694 Msa0260980:three_prime_UTR
GGCAAAGAGAGTTTGGAGGG+TGG 0.528494 2_2:-59098835 None:intergenic
CTTGTTGAAGCTGAATGCCC+TGG 0.535811 2_2:+59098507 Msa0260980:CDS
AGTCAAGTTGTCAAGAGAAG+AGG 0.538282 2_2:+59099266 Msa0260980:CDS
GTTTGAAAATGATGTGCAAA+GGG 0.541770 2_2:-59099084 None:intergenic
ACTCCATCCCTTCTACCTGT+TGG 0.553125 2_2:-59098756 None:intergenic
ACATAATGTACCACCAAACC+AGG 0.555806 2_2:-59099607 None:intergenic
GAAAGTTCCAACAGGTAGAA+GGG 0.557568 2_2:+59098749 Msa0260980:CDS
GTTCCAACAGGTAGAAGGGA+TGG 0.566917 2_2:+59098753 Msa0260980:CDS
GATTGGCAAAGAGAGTTTGG+AGG 0.571052 2_2:-59098839 None:intergenic
ATTAATGCAGCAGCAAGTGA+TGG 0.574993 2_2:-59098247 None:intergenic
ATTGGCAAAGAGAGTTTGGA+GGG 0.582534 2_2:-59098838 None:intergenic
TACAATAGTCGAAATGGACC+CGG 0.583521 2_2:+59099211 Msa0260980:CDS
ATGAGAAATTATCTAAAGCA+AGG 0.585404 2_2:+59099784 Msa0260980:three_prime_UTR
CAAATGTGTTTCGACTTCCC+GGG 0.601945 2_2:-59099229 None:intergenic
GCATATTCACTATCAAGTGA+TGG 0.604475 2_2:-59099143 None:intergenic
TCAGCACAAGAAACAACACC+AGG 0.606055 2_2:-59098525 None:intergenic
ACAATAGTCGAAATGGACCC+GGG 0.607266 2_2:+59099212 Msa0260980:CDS
TATTGAGACACAACATGACA+TGG 0.608234 2_2:-59099528 None:intergenic
ACTCATGCTCAATTGCAGCT+AGG 0.609605 2_2:+59098151 Msa0260980:CDS
GGTTTGAAAATGATGTGCAA+AGG 0.614722 2_2:-59099085 None:intergenic
CAGGGCATTCAGCTTCAACA+AGG 0.628010 2_2:-59098506 None:intergenic
CAGCAAGTGATGGAGCATTG+TGG 0.631408 2_2:-59098237 None:intergenic
AAAGTTAAGACAGGGTCACA+AGG 0.639191 2_2:+59099419 Msa0260980:CDS
ATGTAGTATTACCAGAGAGG+AGG 0.667777 2_2:-59098887 None:intergenic
TGAATGTAGTATTACCAGAG+AGG 0.695454 2_2:-59098890 None:intergenic
GACAAGTTAAAGTTAAGACA+GGG 0.715537 2_2:+59099411 Msa0260980:CDS
CAGCACAAGAAACAACACCA+GGG 0.760815 2_2:-59098524 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATACTTTCATTTCATTTT+TGG + chr2_2:59098328-59098347 Msa0260980:intron 15.0%
!! CTGAAAAATAATTTAAATCA+TGG - chr2_2:59099043-59099062 None:intergenic 15.0%
!!! CATGATTTAAATTATTTTTC+AGG + chr2_2:59099041-59099060 Msa0260980:intron 15.0%
!!! TAATAATTTTAAGAACAAGT+GGG + chr2_2:59099560-59099579 Msa0260980:three_prime_UTR 15.0%
!!! TTATACTTTCATTTCATTTT+TGG + chr2_2:59098328-59098347 Msa0260980:intron 15.0%
!! CTGAAAAATAATTTAAATCA+TGG - chr2_2:59099043-59099062 None:intergenic 15.0%
!!! CATGATTTAAATTATTTTTC+AGG + chr2_2:59099041-59099060 Msa0260980:intron 15.0%
!!! TAATAATTTTAAGAACAAGT+GGG + chr2_2:59099560-59099579 Msa0260980:three_prime_UTR 15.0%
!!! AACATTAAGCATTTTGATTT+AGG + chr2_2:59098377-59098396 Msa0260980:intron 20.0%
!!! ACATTAAGCATTTTGATTTA+GGG + chr2_2:59098378-59098397 Msa0260980:intron 20.0%
!! TTCCAGTAAAATTGTATAAA+CGG - chr2_2:59099109-59099128 None:intergenic 20.0%
!!! TTTATACAATTTTACTGGAA+AGG + chr2_2:59099109-59099128 Msa0260980:CDS 20.0%
!!! TTATACAATTTTACTGGAAA+GGG + chr2_2:59099110-59099129 Msa0260980:CDS 20.0%
!!! GTAATAATTTTAAGAACAAG+TGG + chr2_2:59099559-59099578 Msa0260980:three_prime_UTR 20.0%
!!! CAATTGTAATTTTTATTTCC+TGG + chr2_2:59099589-59099608 Msa0260980:three_prime_UTR 20.0%
!! TAATATATGTGTTGTGTAAA+AGG + chr2_2:59099690-59099709 Msa0260980:three_prime_UTR 20.0%
!! GAAACTAATGTATTGAAATA+AGG - chr2_2:59099827-59099846 None:intergenic 20.0%
!!! AACATTAAGCATTTTGATTT+AGG + chr2_2:59098377-59098396 Msa0260980:intron 20.0%
!!! ACATTAAGCATTTTGATTTA+GGG + chr2_2:59098378-59098397 Msa0260980:intron 20.0%
!! TTCCAGTAAAATTGTATAAA+CGG - chr2_2:59099109-59099128 None:intergenic 20.0%
!!! TTTATACAATTTTACTGGAA+AGG + chr2_2:59099109-59099128 Msa0260980:CDS 20.0%
!!! TTATACAATTTTACTGGAAA+GGG + chr2_2:59099110-59099129 Msa0260980:CDS 20.0%
!!! GTAATAATTTTAAGAACAAG+TGG + chr2_2:59099559-59099578 Msa0260980:three_prime_UTR 20.0%
!!! CAATTGTAATTTTTATTTCC+TGG + chr2_2:59099589-59099608 Msa0260980:three_prime_UTR 20.0%
!! TAATATATGTGTTGTGTAAA+AGG + chr2_2:59099690-59099709 Msa0260980:three_prime_UTR 20.0%
!! GAAACTAATGTATTGAAATA+AGG - chr2_2:59099827-59099846 None:intergenic 20.0%
! AAATCAGTGTAATTACTTCA+AGG + chr2_2:59098099-59098118 Msa0260980:CDS 25.0%
! ATTCTATCTTTAACAGACTA+AGG + chr2_2:59098599-59098618 Msa0260980:intron 25.0%
!! TTTTAAATCAAGTCCTTGAT+TGG - chr2_2:59098859-59098878 None:intergenic 25.0%
!! TTTTCCATCTCTAATTATGT+CGG - chr2_2:59098977-59098996 None:intergenic 25.0%
!! AACCGTTTATACAATTTTAC+TGG + chr2_2:59099104-59099123 Msa0260980:CDS 25.0%
!!! TTTCTGTTGATTTGTGTTTT+TGG + chr2_2:59099486-59099505 Msa0260980:three_prime_UTR 25.0%
!!! TTCTGTTGATTTGTGTTTTT+GGG + chr2_2:59099487-59099506 Msa0260980:three_prime_UTR 25.0%
!!! GTAATTTTTATTTCCTGGTT+TGG + chr2_2:59099594-59099613 Msa0260980:three_prime_UTR 25.0%
!!! ATATATTATTGACTCTGCTT+TGG - chr2_2:59099678-59099697 None:intergenic 25.0%
!! AAAGGTTGGTTACATTAATT+AGG + chr2_2:59099708-59099727 Msa0260980:three_prime_UTR 25.0%
!! AAGGTTGGTTACATTAATTA+GGG + chr2_2:59099709-59099728 Msa0260980:three_prime_UTR 25.0%
!! ATGAGAAATTATCTAAAGCA+AGG + chr2_2:59099784-59099803 Msa0260980:three_prime_UTR 25.0%
! TTGAAATAAGGATCCATTTA+AGG - chr2_2:59099815-59099834 None:intergenic 25.0%
! AAATCAGTGTAATTACTTCA+AGG + chr2_2:59098099-59098118 Msa0260980:CDS 25.0%
! ATTCTATCTTTAACAGACTA+AGG + chr2_2:59098599-59098618 Msa0260980:intron 25.0%
!! TTTTAAATCAAGTCCTTGAT+TGG - chr2_2:59098859-59098878 None:intergenic 25.0%
!! TTTTCCATCTCTAATTATGT+CGG - chr2_2:59098977-59098996 None:intergenic 25.0%
!! AACCGTTTATACAATTTTAC+TGG + chr2_2:59099104-59099123 Msa0260980:CDS 25.0%
!!! TTTCTGTTGATTTGTGTTTT+TGG + chr2_2:59099486-59099505 Msa0260980:three_prime_UTR 25.0%
!!! TTCTGTTGATTTGTGTTTTT+GGG + chr2_2:59099487-59099506 Msa0260980:three_prime_UTR 25.0%
!!! GTAATTTTTATTTCCTGGTT+TGG + chr2_2:59099594-59099613 Msa0260980:three_prime_UTR 25.0%
!!! ATATATTATTGACTCTGCTT+TGG - chr2_2:59099678-59099697 None:intergenic 25.0%
!! AAAGGTTGGTTACATTAATT+AGG + chr2_2:59099708-59099727 Msa0260980:three_prime_UTR 25.0%
!! AAGGTTGGTTACATTAATTA+GGG + chr2_2:59099709-59099728 Msa0260980:three_prime_UTR 25.0%
!! ATGAGAAATTATCTAAAGCA+AGG + chr2_2:59099784-59099803 Msa0260980:three_prime_UTR 25.0%
! TTGAAATAAGGATCCATTTA+AGG - chr2_2:59099815-59099834 None:intergenic 25.0%
! ACTTTCATGATTGCTTTGTT+AGG + chr2_2:59098278-59098297 Msa0260980:CDS 30.0%
! CTTTCATGATTGCTTTGTTA+GGG + chr2_2:59098279-59098298 Msa0260980:CDS 30.0%
!!! ATTTTGATTTAGGGATGTGA+TGG + chr2_2:59098387-59098406 Msa0260980:intron 30.0%
ATAGAATTGAGTACTTACTG+TGG - chr2_2:59098586-59098605 None:intergenic 30.0%
TTAAATAAGCCAATCCAAAC+AGG - chr2_2:59098625-59098644 None:intergenic 30.0%
! ATTTGGTGATTTGTGATTTC+AGG + chr2_2:59098713-59098732 Msa0260980:intron 30.0%
! TTTGGTGATTTGTGATTTCA+GGG + chr2_2:59098714-59098733 Msa0260980:intron 30.0%
GTTTGAAAATGATGTGCAAA+GGG - chr2_2:59099087-59099106 None:intergenic 30.0%
TCTTACACTTGAATGTCTTT+AGG - chr2_2:59099175-59099194 None:intergenic 30.0%
CAATACTACAATAGTCGAAA+TGG + chr2_2:59099205-59099224 Msa0260980:CDS 30.0%
TGCTGAATTTGCAAAATCAA+TGG + chr2_2:59099379-59099398 Msa0260980:CDS 30.0%
TGCAAAATCAATGGAGAAAA+TGG + chr2_2:59099388-59099407 Msa0260980:CDS 30.0%
GCAAAATCAATGGAGAAAAT+GGG + chr2_2:59099389-59099408 Msa0260980:CDS 30.0%
GACAAGTTAAAGTTAAGACA+GGG + chr2_2:59099411-59099430 Msa0260980:CDS 30.0%
!!! ATTTTTATTTCCTGGTTTGG+TGG + chr2_2:59099597-59099616 Msa0260980:three_prime_UTR 30.0%
ATATGTGTTGTGTAAAAGGT+TGG + chr2_2:59099694-59099713 Msa0260980:three_prime_UTR 30.0%
! ACTTTCATGATTGCTTTGTT+AGG + chr2_2:59098278-59098297 Msa0260980:CDS 30.0%
! CTTTCATGATTGCTTTGTTA+GGG + chr2_2:59098279-59098298 Msa0260980:CDS 30.0%
!!! ATTTTGATTTAGGGATGTGA+TGG + chr2_2:59098387-59098406 Msa0260980:intron 30.0%
ATAGAATTGAGTACTTACTG+TGG - chr2_2:59098586-59098605 None:intergenic 30.0%
TTAAATAAGCCAATCCAAAC+AGG - chr2_2:59098625-59098644 None:intergenic 30.0%
! ATTTGGTGATTTGTGATTTC+AGG + chr2_2:59098713-59098732 Msa0260980:intron 30.0%
! TTTGGTGATTTGTGATTTCA+GGG + chr2_2:59098714-59098733 Msa0260980:intron 30.0%
GTTTGAAAATGATGTGCAAA+GGG - chr2_2:59099087-59099106 None:intergenic 30.0%
TCTTACACTTGAATGTCTTT+AGG - chr2_2:59099175-59099194 None:intergenic 30.0%
CAATACTACAATAGTCGAAA+TGG + chr2_2:59099205-59099224 Msa0260980:CDS 30.0%
TGCTGAATTTGCAAAATCAA+TGG + chr2_2:59099379-59099398 Msa0260980:CDS 30.0%
TGCAAAATCAATGGAGAAAA+TGG + chr2_2:59099388-59099407 Msa0260980:CDS 30.0%
GCAAAATCAATGGAGAAAAT+GGG + chr2_2:59099389-59099408 Msa0260980:CDS 30.0%
GACAAGTTAAAGTTAAGACA+GGG + chr2_2:59099411-59099430 Msa0260980:CDS 30.0%
!!! ATTTTTATTTCCTGGTTTGG+TGG + chr2_2:59099597-59099616 Msa0260980:three_prime_UTR 30.0%
ATATGTGTTGTGTAAAAGGT+TGG + chr2_2:59099694-59099713 Msa0260980:three_prime_UTR 30.0%
!! GCAATGATTAGTTCAGCTTT+TGG - chr2_2:59098196-59098215 None:intergenic 35.0%
!!! GAGCATTTTTTTCAGCTTGT+TGG - chr2_2:59098437-59098456 None:intergenic 35.0%
AAGCCTCTAACAGTAAGATT+TGG - chr2_2:59098462-59098481 None:intergenic 35.0%
! CTACTGACTACTGATACATT+TGG + chr2_2:59098696-59098715 Msa0260980:intron 35.0%
TGAATGTAGTATTACCAGAG+AGG - chr2_2:59098893-59098912 None:intergenic 35.0%
GTTACCGACATAATTAGAGA+TGG + chr2_2:59098970-59098989 Msa0260980:intron 35.0%
GGTTTGAAAATGATGTGCAA+AGG - chr2_2:59099088-59099107 None:intergenic 35.0%
GCATATTCACTATCAAGTGA+TGG - chr2_2:59099146-59099165 None:intergenic 35.0%
AGTCGAAACACATTTGATCT+TGG + chr2_2:59099236-59099255 Msa0260980:CDS 35.0%
!!! AATTTTCAAGTGAGCCTTGA+AGG - chr2_2:59099355-59099374 None:intergenic 35.0%
GGACAAGTTAAAGTTAAGAC+AGG + chr2_2:59099410-59099429 Msa0260980:CDS 35.0%
!!! TTGATTTGTGTTTTTGGGTC+TGG + chr2_2:59099492-59099511 Msa0260980:three_prime_UTR 35.0%
TATTGAGACACAACATGACA+TGG - chr2_2:59099531-59099550 None:intergenic 35.0%
AAGCAAGGTGTATCCTTAAA+TGG + chr2_2:59099799-59099818 Msa0260980:three_prime_UTR 35.0%
!! GCAATGATTAGTTCAGCTTT+TGG - chr2_2:59098196-59098215 None:intergenic 35.0%
!!! GAGCATTTTTTTCAGCTTGT+TGG - chr2_2:59098437-59098456 None:intergenic 35.0%
AAGCCTCTAACAGTAAGATT+TGG - chr2_2:59098462-59098481 None:intergenic 35.0%
! CTACTGACTACTGATACATT+TGG + chr2_2:59098696-59098715 Msa0260980:intron 35.0%
TGAATGTAGTATTACCAGAG+AGG - chr2_2:59098893-59098912 None:intergenic 35.0%
GTTACCGACATAATTAGAGA+TGG + chr2_2:59098970-59098989 Msa0260980:intron 35.0%
GGTTTGAAAATGATGTGCAA+AGG - chr2_2:59099088-59099107 None:intergenic 35.0%
GCATATTCACTATCAAGTGA+TGG - chr2_2:59099146-59099165 None:intergenic 35.0%
AGTCGAAACACATTTGATCT+TGG + chr2_2:59099236-59099255 Msa0260980:CDS 35.0%
!!! AATTTTCAAGTGAGCCTTGA+AGG - chr2_2:59099355-59099374 None:intergenic 35.0%
GGACAAGTTAAAGTTAAGAC+AGG + chr2_2:59099410-59099429 Msa0260980:CDS 35.0%
!!! TTGATTTGTGTTTTTGGGTC+TGG + chr2_2:59099492-59099511 Msa0260980:three_prime_UTR 35.0%
TATTGAGACACAACATGACA+TGG - chr2_2:59099531-59099550 None:intergenic 35.0%
AAGCAAGGTGTATCCTTAAA+TGG + chr2_2:59099799-59099818 Msa0260980:three_prime_UTR 35.0%
! TTCAGCTTTTGGACAACTCT+TGG - chr2_2:59098185-59098204 None:intergenic 40.0%
ATTAATGCAGCAGCAAGTGA+TGG - chr2_2:59098250-59098269 None:intergenic 40.0%
!! GTTGGTTTGTTGAGTTCAGA+AGG - chr2_2:59098419-59098438 None:intergenic 40.0%
CCTCTAACAGTAAGATTTGG+AGG - chr2_2:59098459-59098478 None:intergenic 40.0%
CCTCCAAATCTTACTGTTAG+AGG + chr2_2:59098456-59098475 Msa0260980:CDS 40.0%
TTAACAGACTAAGGCCTGTT+TGG + chr2_2:59098608-59098627 Msa0260980:intron 40.0%
CCTGTTGGAACTTTCCAATA+TGG - chr2_2:59098744-59098763 None:intergenic 40.0%
CCATATTGGAAAGTTCCAAC+AGG + chr2_2:59098741-59098760 Msa0260980:CDS 40.0%
GAAAGTTCCAACAGGTAGAA+GGG + chr2_2:59098749-59098768 Msa0260980:CDS 40.0%
ATTGGCAAAGAGAGTTTGGA+GGG - chr2_2:59098841-59098860 None:intergenic 40.0%
CTTGATTGGCAAAGAGAGTT+TGG - chr2_2:59098845-59098864 None:intergenic 40.0%
CAAACTCTCTTTGCCAATCA+AGG + chr2_2:59098843-59098862 Msa0260980:CDS 40.0%
ATGTAGTATTACCAGAGAGG+AGG - chr2_2:59098890-59098909 None:intergenic 40.0%
! GACGACGGTGCATAATTTTA+AGG - chr2_2:59098923-59098942 None:intergenic 40.0%
!!! TTTTCAGGTGCTCACACAAT+TGG + chr2_2:59099056-59099075 Msa0260980:intron 40.0%
TACAATAGTCGAAATGGACC+CGG + chr2_2:59099211-59099230 Msa0260980:CDS 40.0%
TCAAATGTGTTTCGACTTCC+CGG - chr2_2:59099233-59099252 None:intergenic 40.0%
! AGTCAAGTTGTCAAGAGAAG+AGG + chr2_2:59099266-59099285 Msa0260980:CDS 40.0%
CTTGTGACTCAATTCCTTCA+AGG + chr2_2:59099338-59099357 Msa0260980:CDS 40.0%
AAAGTTAAGACAGGGTCACA+AGG + chr2_2:59099419-59099438 Msa0260980:CDS 40.0%
ACATAATGTACCACCAAACC+AGG - chr2_2:59099610-59099629 None:intergenic 40.0%
! TTCAGCTTTTGGACAACTCT+TGG - chr2_2:59098185-59098204 None:intergenic 40.0%
ATTAATGCAGCAGCAAGTGA+TGG - chr2_2:59098250-59098269 None:intergenic 40.0%
!! GTTGGTTTGTTGAGTTCAGA+AGG - chr2_2:59098419-59098438 None:intergenic 40.0%
CCTCTAACAGTAAGATTTGG+AGG - chr2_2:59098459-59098478 None:intergenic 40.0%
CCTCCAAATCTTACTGTTAG+AGG + chr2_2:59098456-59098475 Msa0260980:CDS 40.0%
TTAACAGACTAAGGCCTGTT+TGG + chr2_2:59098608-59098627 Msa0260980:intron 40.0%
CCTGTTGGAACTTTCCAATA+TGG - chr2_2:59098744-59098763 None:intergenic 40.0%
CCATATTGGAAAGTTCCAAC+AGG + chr2_2:59098741-59098760 Msa0260980:CDS 40.0%
GAAAGTTCCAACAGGTAGAA+GGG + chr2_2:59098749-59098768 Msa0260980:CDS 40.0%
ATTGGCAAAGAGAGTTTGGA+GGG - chr2_2:59098841-59098860 None:intergenic 40.0%
CTTGATTGGCAAAGAGAGTT+TGG - chr2_2:59098845-59098864 None:intergenic 40.0%
CAAACTCTCTTTGCCAATCA+AGG + chr2_2:59098843-59098862 Msa0260980:CDS 40.0%
ATGTAGTATTACCAGAGAGG+AGG - chr2_2:59098890-59098909 None:intergenic 40.0%
! GACGACGGTGCATAATTTTA+AGG - chr2_2:59098923-59098942 None:intergenic 40.0%
!!! TTTTCAGGTGCTCACACAAT+TGG + chr2_2:59099056-59099075 Msa0260980:intron 40.0%
TACAATAGTCGAAATGGACC+CGG + chr2_2:59099211-59099230 Msa0260980:CDS 40.0%
TCAAATGTGTTTCGACTTCC+CGG - chr2_2:59099233-59099252 None:intergenic 40.0%
! AGTCAAGTTGTCAAGAGAAG+AGG + chr2_2:59099266-59099285 Msa0260980:CDS 40.0%
CTTGTGACTCAATTCCTTCA+AGG + chr2_2:59099338-59099357 Msa0260980:CDS 40.0%
AAAGTTAAGACAGGGTCACA+AGG + chr2_2:59099419-59099438 Msa0260980:CDS 40.0%
ACATAATGTACCACCAAACC+AGG - chr2_2:59099610-59099629 None:intergenic 40.0%
ACTCATGCTCAATTGCAGCT+AGG + chr2_2:59098151-59098170 Msa0260980:CDS 45.0%
CAGCACAAGAAACAACACCA+GGG - chr2_2:59098527-59098546 None:intergenic 45.0%
TCAGCACAAGAAACAACACC+AGG - chr2_2:59098528-59098547 None:intergenic 45.0%
AGACTAAGGCCTGTTTGGAT+TGG + chr2_2:59098613-59098632 Msa0260980:intron 45.0%
! GGTGATTTGTGATTTCAGGG+TGG + chr2_2:59098717-59098736 Msa0260980:intron 45.0%
GATTTCAGGGTGGTCCATAT+TGG + chr2_2:59098727-59098746 Msa0260980:intron 45.0%
GGAAAGTTCCAACAGGTAGA+AGG + chr2_2:59098748-59098767 Msa0260980:CDS 45.0%
TGGAGTCGTATCGAATTTGC+TGG + chr2_2:59098773-59098792 Msa0260980:CDS 45.0%
AGGGTGGAGAAGTTGGAAAA+GGG - chr2_2:59098822-59098841 None:intergenic 45.0%
GATTGGCAAAGAGAGTTTGG+AGG - chr2_2:59098842-59098861 None:intergenic 45.0%
AAAGACTTAGTCCTCCTCTC+TGG + chr2_2:59098876-59098895 Msa0260980:CDS 45.0%
ACAATAGTCGAAATGGACCC+GGG + chr2_2:59099212-59099231 Msa0260980:CDS 45.0%
CAAATGTGTTTCGACTTCCC+GGG - chr2_2:59099232-59099251 None:intergenic 45.0%
ACTCATGCTCAATTGCAGCT+AGG + chr2_2:59098151-59098170 Msa0260980:CDS 45.0%
CAGCACAAGAAACAACACCA+GGG - chr2_2:59098527-59098546 None:intergenic 45.0%
TCAGCACAAGAAACAACACC+AGG - chr2_2:59098528-59098547 None:intergenic 45.0%
AGACTAAGGCCTGTTTGGAT+TGG + chr2_2:59098613-59098632 Msa0260980:intron 45.0%
! GGTGATTTGTGATTTCAGGG+TGG + chr2_2:59098717-59098736 Msa0260980:intron 45.0%
GATTTCAGGGTGGTCCATAT+TGG + chr2_2:59098727-59098746 Msa0260980:intron 45.0%
GGAAAGTTCCAACAGGTAGA+AGG + chr2_2:59098748-59098767 Msa0260980:CDS 45.0%
TGGAGTCGTATCGAATTTGC+TGG + chr2_2:59098773-59098792 Msa0260980:CDS 45.0%
AGGGTGGAGAAGTTGGAAAA+GGG - chr2_2:59098822-59098841 None:intergenic 45.0%
GATTGGCAAAGAGAGTTTGG+AGG - chr2_2:59098842-59098861 None:intergenic 45.0%
AAAGACTTAGTCCTCCTCTC+TGG + chr2_2:59098876-59098895 Msa0260980:CDS 45.0%
ACAATAGTCGAAATGGACCC+GGG + chr2_2:59099212-59099231 Msa0260980:CDS 45.0%
CAAATGTGTTTCGACTTCCC+GGG - chr2_2:59099232-59099251 None:intergenic 45.0%
!! CAGCAAGTGATGGAGCATTG+TGG - chr2_2:59098240-59098259 None:intergenic 50.0%
! CAGGGCATTCAGCTTCAACA+AGG - chr2_2:59098509-59098528 None:intergenic 50.0%
CTTGTTGAAGCTGAATGCCC+TGG + chr2_2:59098507-59098526 Msa0260980:CDS 50.0%
TGTGGCTGCAATAGAGTCTC+TGG - chr2_2:59098568-59098587 None:intergenic 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr2_2:59098753-59098772 Msa0260980:CDS 50.0%
ACTCCATCCCTTCTACCTGT+TGG - chr2_2:59098759-59098778 None:intergenic 50.0%
GAGAAGTTGGAAAAGGGAGC+AGG - chr2_2:59098816-59098835 None:intergenic 50.0%
GAGGGTGGAGAAGTTGGAAA+AGG - chr2_2:59098823-59098842 None:intergenic 50.0%
AGTTTGGAGGGTGGAGAAGT+TGG - chr2_2:59098829-59098848 None:intergenic 50.0%
TGAATTAGCGTGCACGACGA+CGG - chr2_2:59098938-59098957 None:intergenic 50.0%
CAGGGTCACAAGGTGTGATT+AGG + chr2_2:59099429-59099448 Msa0260980:CDS 50.0%
!! CAGCAAGTGATGGAGCATTG+TGG - chr2_2:59098240-59098259 None:intergenic 50.0%
! CAGGGCATTCAGCTTCAACA+AGG - chr2_2:59098509-59098528 None:intergenic 50.0%
CTTGTTGAAGCTGAATGCCC+TGG + chr2_2:59098507-59098526 Msa0260980:CDS 50.0%
TGTGGCTGCAATAGAGTCTC+TGG - chr2_2:59098568-59098587 None:intergenic 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr2_2:59098753-59098772 Msa0260980:CDS 50.0%
ACTCCATCCCTTCTACCTGT+TGG - chr2_2:59098759-59098778 None:intergenic 50.0%
GAGAAGTTGGAAAAGGGAGC+AGG - chr2_2:59098816-59098835 None:intergenic 50.0%
GAGGGTGGAGAAGTTGGAAA+AGG - chr2_2:59098823-59098842 None:intergenic 50.0%
AGTTTGGAGGGTGGAGAAGT+TGG - chr2_2:59098829-59098848 None:intergenic 50.0%
TGAATTAGCGTGCACGACGA+CGG - chr2_2:59098938-59098957 None:intergenic 50.0%
CAGGGTCACAAGGTGTGATT+AGG + chr2_2:59099429-59099448 Msa0260980:CDS 50.0%
GGCAAAGAGAGTTTGGAGGG+TGG - chr2_2:59098838-59098857 None:intergenic 55.0%
GGCAAAGAGAGTTTGGAGGG+TGG - chr2_2:59098838-59098857 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 59098022 59099852 59098022 ID=Msa0260980;Name=Msa0260980
chr2_2 mRNA 59098022 59099852 59098022 ID=Msa0260980-mRNA-1;Parent=Msa0260980;Name=Msa0260980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=66|1|1|1|1|1|4|374|326
chr2_2 exon 59098022 59098300 59098022 ID=Msa0260980-mRNA-1:exon:18214;Parent=Msa0260980-mRNA-1
chr2_2 exon 59098399 59098587 59098399 ID=Msa0260980-mRNA-1:exon:18215;Parent=Msa0260980-mRNA-1
chr2_2 exon 59098735 59098897 59098735 ID=Msa0260980-mRNA-1:exon:18216;Parent=Msa0260980-mRNA-1
chr2_2 exon 59099063 59099852 59099063 ID=Msa0260980-mRNA-1:exon:18217;Parent=Msa0260980-mRNA-1
chr2_2 five_prime_UTR 59098022 59098087 59098022 ID=Msa0260980-mRNA-1:five_prime_utr;Parent=Msa0260980-mRNA-1
chr2_2 CDS 59098088 59098300 59098088 ID=Msa0260980-mRNA-1:cds;Parent=Msa0260980-mRNA-1
chr2_2 CDS 59098399 59098587 59098399 ID=Msa0260980-mRNA-1:cds;Parent=Msa0260980-mRNA-1
chr2_2 CDS 59098735 59098897 59098735 ID=Msa0260980-mRNA-1:cds;Parent=Msa0260980-mRNA-1
chr2_2 CDS 59099063 59099478 59099063 ID=Msa0260980-mRNA-1:cds;Parent=Msa0260980-mRNA-1
chr2_2 three_prime_UTR 59099479 59099852 59099479 ID=Msa0260980-mRNA-1:three_prime_utr;Parent=Msa0260980-mRNA-1
Gene Sequence

>Msa0260980

ATGAAAATGAGAAATCAGTGTAATTACTTCAAGGTTTTGATTCTTTGTATTTTAGCAGCATCAACTCATGCTCAATTGCAGCTAGGATTTTATACCAAGAGTTGTCCAAAAGCTGAACTAATCATTGCAAACTTTGTTCATGAACATATCCACAATGCTCCATCACTTGCTGCTGCATTAATAAGAATGCACTTTCATGATTGCTTTGTTAGGGGATGTGATGGATCAGTCCTTCTGAACTCAACAAACCAACAAGCTGAAAAAAATGCTCCTCCAAATCTTACTGTTAGAGGCTTTGACTTCATTGACAGAATAAAGAGCCTTGTTGAAGCTGAATGCCCTGGTGTTGTTTCTTGTGCTGATATCATAGCTTTATCTGCCAGAGACTCTATTGCAGCCACAGGTGGTCCATATTGGAAAGTTCCAACAGGTAGAAGGGATGGAGTCGTATCGAATTTGCTGGAAGCAAATCAAAACATTCCTGCTCCCTTTTCCAACTTCTCCACCCTCCAAACTCTCTTTGCCAATCAAGGACTTGATTTAAAAGACTTAGTCCTCCTCTCTGGTGCTCACACAATTGGTATCTCCCTTTGCACATCATTTTCAAACCGTTTATACAATTTTACTGGAAAGGGTGATCAAGATCCATCACTTGATAGTGAATATGCACAAAACCTAAAGACATTCAAGTGTAAGAACATCAATGACAATACTACAATAGTCGAAATGGACCCGGGAAGTCGAAACACATTTGATCTTGGTTACTATAGTCAAGTTGTCAAGAGAAGAGGTTTGTTTCAGTCTGATTCTGCATTGTTGACAAATTCAGTTACAAAAGCTCTTGTGACTCAATTCCTTCAAGGCTCACTTGAAAATTTCTATGCTGAATTTGCAAAATCAATGGAGAAAATGGGACAAGTTAAAGTTAAGACAGGGTCACAAGGTGTGATTAGGAAGCATTGTGCACTTGTAAATAACTAA

Protein sequence

>Msa0260980

MKMRNQCNYFKVLILCILAASTHAQLQLGFYTKSCPKAELIIANFVHEHIHNAPSLAAALIRMHFHDCFVRGCDGSVLLNSTNQQAEKNAPPNLTVRGFDFIDRIKSLVEAECPGVVSCADIIALSARDSIAATGGPYWKVPTGRRDGVVSNLLEANQNIPAPFSNFSTLQTLFANQGLDLKDLVLLSGAHTIGISLCTSFSNRLYNFTGKGDQDPSLDSEYAQNLKTFKCKNINDNTTIVEMDPGSRNTFDLGYYSQVVKRRGLFQSDSALLTNSVTKALVTQFLQGSLENFYAEFAKSMEKMGQVKVKTGSQGVIRKHCALVNN*