AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0673940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0673940 MtrunA17_Chr4g0003411 98.762 808 10 0 1 808 1 808 0.0 1665
Msa0673940 MtrunA17_Chr2g0333021 85.167 809 119 1 1 808 1 809 0.0 1452
Msa0673940 MtrunA17_Chr3g0137821 64.140 831 266 11 1 808 1 822 0.0 1082
Msa0673940 MtrunA17_Chr3g0137791 63.341 832 266 10 6 808 5 826 0.0 1070
Msa0673940 MtrunA17_Chr7g0246481 46.303 825 389 17 6 796 299 1103 0.0 726
Msa0673940 MtrunA17_Chr8g0350951 47.296 795 381 15 26 796 258 1038 0.0 721
Msa0673940 MtrunA17_Chr5g0398161 47.594 769 366 14 50 796 90 843 0.0 719
Msa0673940 MtrunA17_Chr5g0398171 45.421 819 400 17 6 796 38 837 0.0 711
Msa0673940 MtrunA17_Chr5g0406161 45.963 805 371 14 50 808 86 872 0.0 706
Msa0673940 MtrunA17_Chr8g0380631 47.177 797 364 17 50 808 72 849 0.0 699
Msa0673940 MtrunA17_Chr3g0143471 45.936 812 368 20 50 808 73 866 0.0 682
Msa0673940 MtrunA17_Chr2g0330431 42.222 810 403 19 6 808 5 756 0.0 613
Msa0673940 MtrunA17_Chr8g0341931 41.430 811 402 20 6 808 8 753 0.0 590
Msa0673940 MtrunA17_Chr5g0406151 54.930 71 29 1 320 390 12 79 2.24e-22 92.0
Msa0673940 MtrunA17_Chr1g0192401 32.636 239 124 10 497 725 733 944 4.70e-21 99.4
Msa0673940 MtrunA17_Chr1g0192401 29.825 228 118 10 211 426 362 559 7.85e-16 82.4
Msa0673940 MtrunA17_Chr2g0295411 30.924 249 132 9 456 692 736 956 2.37e-18 90.5
Msa0673940 MtrunA17_Chr2g0295411 27.039 233 119 8 211 426 388 586 7.77e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0673940 AT3G15730.1 81.728 810 146 2 1 808 1 810 0.0 1420
Msa0673940 AT1G52570.1 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0673940 AT1G52570.3 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0673940 AT1G52570.2 81.358 810 149 2 1 808 1 810 0.0 1412
Msa0673940 AT5G25370.1 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0673940 AT5G25370.3 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0673940 AT5G25370.2 61.576 825 290 10 3 808 4 820 0.0 1035
Msa0673940 AT5G25370.4 64.334 743 257 6 72 808 5 745 0.0 1000
Msa0673940 AT2G42010.1 45.510 824 394 17 6 796 271 1072 0.0 729
Msa0673940 AT2G42010.2 44.444 846 396 17 6 796 271 1097 0.0 723
Msa0673940 AT4G00240.3 46.545 767 377 13 50 796 11 764 0.0 715
Msa0673940 AT4G11840.1 45.157 826 404 15 6 796 44 855 0.0 714
Msa0673940 AT4G00240.1 45.512 791 393 14 26 796 144 916 0.0 714
Msa0673940 AT4G00240.2 46.545 767 377 13 50 796 128 881 0.0 714
Msa0673940 AT4G11830.2 44.928 828 403 15 6 796 34 845 0.0 714
Msa0673940 AT4G11830.1 46.323 775 372 13 50 796 55 813 0.0 712
Msa0673940 AT4G11850.1 45.200 823 404 16 6 796 40 847 0.0 703
Msa0673940 AT4G11840.2 44.606 825 380 15 6 796 44 825 0.0 693
Msa0673940 AT4G35790.2 46.491 798 368 17 50 808 80 857 0.0 677
Msa0673940 AT4G35790.1 46.106 809 366 18 50 808 80 868 0.0 670
Msa0673940 AT1G55180.2 40.678 767 402 17 50 808 19 740 0.0 586
Msa0673940 AT1G55180.1 39.286 812 427 18 5 808 9 762 0.0 585
Msa0673940 AT4G35790.3 46.242 612 282 12 50 626 80 679 1.09e-173 517
Msa0673940 AT4G11830.4 43.669 616 307 11 6 596 34 634 2.99e-169 503
Msa0673940 AT4G11830.3 43.907 599 296 11 6 579 34 617 9.30e-165 492
Msa0673940 AT3G05630.1 30.932 236 126 8 499 724 714 922 3.56e-20 96.7
Msa0673940 AT3G05630.1 27.329 322 155 14 131 426 304 572 3.07e-15 80.9
Msa0673940 AT3G16785.6 32.283 254 122 11 456 692 710 930 3.48e-19 93.6
Msa0673940 AT3G16785.6 30.942 223 104 9 220 426 389 577 1.26e-15 82.0
Msa0673940 AT3G16785.5 32.283 254 122 11 456 692 710 930 3.48e-19 93.6
Msa0673940 AT3G16785.5 30.942 223 104 9 220 426 389 577 1.26e-15 82.0
Msa0673940 AT3G16785.4 32.283 254 122 11 456 692 710 930 3.84e-19 93.6
Msa0673940 AT3G16785.4 30.942 223 104 9 220 426 389 577 1.24e-15 82.0
Msa0673940 AT3G16785.1 32.283 254 122 11 456 692 710 930 3.86e-19 93.6
Msa0673940 AT3G16785.1 30.942 223 104 9 220 426 389 577 1.30e-15 82.0
Msa0673940 AT3G16785.3 32.283 254 122 11 456 692 710 930 3.87e-19 93.6
Msa0673940 AT3G16785.3 30.942 223 104 9 220 426 389 577 1.18e-15 82.0
Msa0673940 AT3G16785.2 32.283 254 122 11 456 692 710 930 3.87e-19 93.6
Msa0673940 AT3G16785.2 30.942 223 104 9 220 426 389 577 1.18e-15 82.0

Find 242 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGGTGGGTGGAAATTT+TGG 0.132980 4_4:-20836474 Msa0673940:CDS
GCTTGAACCGATGCACTTTC+TGG 0.142366 4_4:+20835108 None:intergenic
ATTGATGGTGGGGCTGCTTT+TGG 0.174765 4_4:-20835435 Msa0673940:CDS
AGGAAGATGAAGAGAATAAA+AGG 0.186748 4_4:+20838258 None:intergenic
GCAGCATCTTCAGGAGTTTC+TGG 0.186898 4_4:+20835408 None:intergenic
ATCGGTTGGTTTGTTGAAAA+AGG 0.188851 4_4:-20836009 Msa0673940:CDS
CGTTCTTCTGCCTCGGTAAT+CGG 0.218124 4_4:-20834984 Msa0673940:CDS
TCCATCCCCGGTAACATTTC+CGG 0.219913 4_4:-20835496 Msa0673940:CDS
ATCCCTAAAATACCACTTTC+TGG 0.238358 4_4:-20836257 Msa0673940:CDS
TCGCTCCGTCCATTGATCTT+TGG 0.259842 4_4:+20834687 None:intergenic
TTTCCTTGGTGAGGGATTCT+AGG 0.266899 4_4:-20836130 Msa0673940:CDS
ACCAGATTGCTGACAAATAT+TGG 0.280067 4_4:-20834496 Msa0673940:CDS
AGGATTTACTTGTCTCTCTA+AGG 0.282625 4_4:-20835542 Msa0673940:CDS
CCTATCCTCACTACTTAGTT+TGG 0.297118 4_4:-20834311 Msa0673940:exon
CCAGCTCTCGCAGCATCTTC+AGG 0.308289 4_4:+20835399 None:intergenic
AAAAGTCTAGTGAAGGTGTT+AGG 0.315711 4_4:-20836061 Msa0673940:CDS
ACTCTATGCTACCATTGATT+TGG 0.326580 4_4:-20836693 Msa0673940:CDS
ACCGCCATCATCAGGATTGC+GGG 0.327108 4_4:+20835911 None:intergenic
CCTGTTGGAGCAACTTTAAT+CGG 0.329996 4_4:-20836542 Msa0673940:CDS
GTGAAAAGACTCATACCATT+TGG 0.341639 4_4:+20836619 None:intergenic
TCACTTGAGCACGACCTTCC+TGG 0.343592 4_4:-20834455 Msa0673940:CDS
CTTGAACCGATGCACTTTCT+GGG 0.343605 4_4:+20835109 None:intergenic
ATCTTAAGTGAAAGTTCCTT+TGG 0.350014 4_4:+20835201 None:intergenic
CCCAATATTTGTCAGCAATC+TGG 0.350230 4_4:+20834495 None:intergenic
ATCCCTCACCAAGGAAATTT+CGG 0.354270 4_4:+20836136 None:intergenic
TTTCATCAACCTAACTTTCC+AGG 0.354896 4_4:-20835687 Msa0673940:CDS
GACACCAAGGCTCGGATTCT+CGG 0.360309 4_4:-20834356 Msa0673940:CDS
TGCATCGGTTCAAGCAATAT+TGG 0.369787 4_4:-20835100 Msa0673940:CDS
CTCTGTGAGAAGAAAGTATA+CGG 0.369951 4_4:+20836332 None:intergenic
TCACATTTACTGTGCTCATA+TGG 0.370819 4_4:-20836600 Msa0673940:CDS
ATGCTTATATTAATGCTATT+CGG 0.380918 4_4:-20835332 Msa0673940:CDS
CCGATTAAAGTTGCTCCAAC+AGG 0.380987 4_4:+20836542 None:intergenic
TCGTAATCTGAATCAGGTTC+TGG 0.383287 4_4:+20834922 None:intergenic
TTCTAGGAGGCCAAAGGCTG+GGG 0.387473 4_4:-20836114 Msa0673940:CDS
GCCTTGAAGGACCGATCGCT+TGG 0.387667 4_4:-20835611 Msa0673940:CDS
CTGGCTGTCTTGCAGCTAAA+TGG 0.393197 4_4:+20834627 None:intergenic
ATTGAGGAAACTGTTGGTCT+TGG 0.395386 4_4:-20836731 Msa0673940:CDS
TGTCCACAACCACAATCTTC+TGG 0.398916 4_4:+20835844 None:intergenic
ATGTCACGAAAGACCGCAGC+TGG 0.399882 4_4:-20836391 Msa0673940:CDS
AGAATCCGAGCCTTGGTGTC+GGG 0.406985 4_4:+20834359 None:intergenic
TGAAAAGACTCATACCATTT+GGG 0.407876 4_4:+20836620 None:intergenic
GTTCTTCTGCCTCGGTAATC+GGG 0.408625 4_4:-20834983 Msa0673940:CDS
CAGCATCTTCAGGAGTTTCT+GGG 0.410189 4_4:+20835409 None:intergenic
TGCAAAGCACCAATGTCTTC+AGG 0.412451 4_4:+20835231 None:intergenic
ATTGCAGCACCTGGAAAGTT+AGG 0.413190 4_4:+20835678 None:intergenic
AAACTTACCTATCATCATCT+TGG 0.413744 4_4:+20834858 None:intergenic
TGATGGCGGTAGCATCATTC+AGG 0.414188 4_4:-20835898 Msa0673940:CDS
CCTGAAGATGCTGCGAGAGC+TGG 0.415758 4_4:-20835399 Msa0673940:CDS
ATTCAAAGCGCTAAATTTCC+TGG 0.415896 4_4:-20836359 Msa0673940:CDS
ATGGCACAAATTCATCTTCA+TGG 0.419518 4_4:-20837839 Msa0673940:CDS
CCAGATTGCTGACAAATATT+GGG 0.419715 4_4:-20834495 Msa0673940:CDS
TGATCATCCGGAAATGTTAC+CGG 0.420713 4_4:+20835489 None:intergenic
CAGCAATCTGGTTCACCTTA+CGG 0.421232 4_4:+20834507 None:intergenic
GGGACACCCTCTGGCCACAT+TGG 0.421738 4_4:+20835129 None:intergenic
GGACACCCTCTGGCCACATT+GGG 0.423065 4_4:+20835130 None:intergenic
TTCACATTCTCTTCAAAACT+TGG 0.423563 4_4:-20838234 Msa0673940:intron
TTCCATGTCTCGTGATCATC+CGG 0.424135 4_4:+20835477 None:intergenic
ATTGAAAATCAGTATTTCCT+TGG 0.426891 4_4:-20835288 Msa0673940:CDS
TTAACTGCTATGACTTTAGC+TGG 0.427079 4_4:-20834120 Msa0673940:three_prime_UTR
CATGAAACGTCGGGACTGTT+GGG 0.428061 4_4:+20834894 None:intergenic
CAGCTGTTTAGATCTATTGA+TGG 0.430877 4_4:-20835450 Msa0673940:CDS
GATGTACAAGGATATCGTTC+TGG 0.435578 4_4:-20835052 Msa0673940:CDS
GTTCATACCAAGATGATGAT+AGG 0.435880 4_4:-20834865 Msa0673940:intron
TCTTCGAACCCTCTTGTATC+GGG 0.436117 4_4:+20836438 None:intergenic
CGCTTATCCGACCTTCCACC+AGG 0.436478 4_4:+20835813 None:intergenic
GGAAGATGAAGAGAATAAAA+GGG 0.437664 4_4:+20838259 None:intergenic
TCCGGAAATGTTACCGGGGA+TGG 0.438701 4_4:+20835495 None:intergenic
AGCTAAATGGTAGGGCTGAT+AGG 0.439308 4_4:+20834640 None:intergenic
TCTTAAGTGAAAGTTCCTTT+GGG 0.441263 4_4:+20835202 None:intergenic
TGTTTAGATCTATTGATGGT+GGG 0.446034 4_4:-20835446 Msa0673940:CDS
TCATGAAACGTCGGGACTGT+TGG 0.446105 4_4:+20834893 None:intergenic
CTGTCTTGCAGCTAAATGGT+AGG 0.447434 4_4:+20834631 None:intergenic
GACATTCATTCCCGCCTTGA+AGG 0.449178 4_4:-20835624 Msa0673940:CDS
TTCAAAGTTCAAACCACAAA+TGG 0.450978 4_4:+20834223 None:intergenic
GTGACAAAACAATGGATCAT+AGG 0.451368 4_4:+20838314 None:intergenic
ATCTTCGAACCCTCTTGTAT+CGG 0.455754 4_4:+20836437 None:intergenic
AAACACATGATATACATTAC+CGG 0.460467 4_4:-20836173 Msa0673940:CDS
TGGTAATGAAAACAAAGATT+AGG 0.461452 4_4:+20834243 None:intergenic
GCACTTTCTGGGACACCCTC+TGG 0.462871 4_4:+20835120 None:intergenic
AAAGTCTAGTGAAGGTGTTA+GGG 0.463222 4_4:-20836060 Msa0673940:CDS
GAAACCGCACAGTTCTTTGA+AGG 0.467829 4_4:-20835960 Msa0673940:CDS
GATTCTAGGAGGCCAAAGGC+TGG 0.467985 4_4:-20836116 Msa0673940:CDS
GCCGCCGAGAATCCGAGCCT+TGG 0.470752 4_4:+20834352 None:intergenic
TGTTTATACCGAAATTTCCT+TGG 0.471207 4_4:-20836144 Msa0673940:CDS
TATCCGGCACATGAGAATCT+TGG 0.471426 4_4:+20836285 None:intergenic
ATGATGCTACCGCCATCATC+AGG 0.471464 4_4:+20835903 None:intergenic
GCGAGAGCTGGGCTTATTAG+TGG 0.471776 4_4:-20835387 Msa0673940:CDS
CACTTGCTTCGCTATCCGAT+TGG 0.472419 4_4:-20834431 Msa0673940:CDS
TCACCAGAAGATTGTGGTTG+TGG 0.472585 4_4:-20835847 Msa0673940:CDS
GCTCTCTCGTAATCTGAATC+AGG 0.473696 4_4:+20834916 None:intergenic
AAGCTTAATGCTGGTGGTGG+TGG 0.475675 4_4:-20837785 Msa0673940:CDS
TTCGGTATAAACAGACCAAC+CGG 0.477585 4_4:+20836154 None:intergenic
AACTAAGTAGTGAGGATAGG+AGG 0.480878 4_4:+20834314 None:intergenic
ATTCTAGGAGGCCAAAGGCT+GGG 0.483116 4_4:-20836115 Msa0673940:CDS
CTGAAGATGCTGCGAGAGCT+GGG 0.483144 4_4:-20835398 Msa0673940:CDS
TTATGAGCCTCATCGGTGTT+GGG 0.483969 4_4:-20836225 Msa0673940:CDS
CCTTGAAGGACCGATCGCTT+GGG 0.484290 4_4:-20835610 Msa0673940:CDS
CTCACAGAGGAAAGGATGTA+AGG 0.488198 4_4:-20836318 Msa0673940:CDS
CTTATGAGCCTCATCGGTGT+TGG 0.488671 4_4:-20836226 Msa0673940:CDS
CCCAAGCGATCGGTCCTTCA+AGG 0.490151 4_4:+20835610 None:intergenic
TTACCAAGATTCTCATGTGC+CGG 0.490601 4_4:-20836288 Msa0673940:CDS
TCAGGTTCTGGTTGTTCAGA+AGG 0.491713 4_4:+20834934 None:intergenic
GGAGATGTCACACAGCTGCC+TGG 0.492596 4_4:-20834395 Msa0673940:CDS
CCAGGTGCTGCAATCACAAA+AGG 0.496013 4_4:-20835669 Msa0673940:CDS
CCATTCAAGACCTCCTCGAC+AGG 0.496478 4_4:+20836506 None:intergenic
CATTGATCTTTGGTTGATGT+TGG 0.498653 4_4:+20834697 None:intergenic
AGGATATCGTTCTGGCACTC+AGG 0.498950 4_4:-20835044 Msa0673940:CDS
TACCGAAATTTCCTTGGTGA+GGG 0.498969 4_4:-20836138 Msa0673940:CDS
TTCTATTATTCCTCCATCCC+CGG 0.504693 4_4:-20835508 Msa0673940:CDS
CTGTTTAGATCTATTGATGG+TGG 0.506397 4_4:-20835447 Msa0673940:CDS
ATTATGAGTAAGATTGAAGC+CGG 0.506694 4_4:-20835180 Msa0673940:CDS
CAATCACAAAAGGCGGTCCA+AGG 0.512335 4_4:-20835659 Msa0673940:CDS
CGTTCTGGCACTCAGGGCAA+AGG 0.513948 4_4:-20835037 Msa0673940:CDS
CCTTCACTAGCAACTCCAAT+CGG 0.513962 4_4:+20834416 None:intergenic
GAAACTGTTGGTCTTGGAAA+GGG 0.514436 4_4:-20836725 Msa0673940:CDS
GATCATCCGGAAATGTTACC+GGG 0.516686 4_4:+20835490 None:intergenic
TGGTGAGGAAATTGATAGGT+GGG 0.528326 4_4:-20836486 Msa0673940:CDS
AAGCAATATTGGACTGGCAG+AGG 0.531832 4_4:-20835089 Msa0673940:CDS
AACATAGATCATGAAACGTC+GGG 0.533395 4_4:+20834885 None:intergenic
ATGTCATGCCAAGGTTCCCT+TGG 0.535392 4_4:+20835642 None:intergenic
AGCGATCGGTCCTTCAAGGC+GGG 0.535565 4_4:+20835614 None:intergenic
GAGAATCCGAGCCTTGGTGT+CGG 0.538506 4_4:+20834358 None:intergenic
TCCAAGCAAAAGAGCTTCCA+AGG 0.539099 4_4:+20835271 None:intergenic
TAAGTCTTGCCACCAGAAAG+TGG 0.539707 4_4:+20836245 None:intergenic
CCATGGACTTGACCACGTGC+TGG 0.539957 4_4:+20834608 None:intergenic
TATTTGACGTTCTTCTGCCT+CGG 0.540130 4_4:-20834991 Msa0673940:CDS
AAGAAAGTATACGGAACTCC+AGG 0.540377 4_4:+20836341 None:intergenic
GTTTAGATCTATTGATGGTG+GGG 0.540703 4_4:-20835445 Msa0673940:CDS
CAAAATATTGCAGCTTCACA+TGG 0.543780 4_4:+20836414 None:intergenic
ATGAGCATACTAATCCCAAA+TGG 0.546662 4_4:-20836634 Msa0673940:CDS
TCTTGCCTTCTCCAAATCAA+TGG 0.546831 4_4:+20836682 None:intergenic
TGATTTGGAGAAGGCAAGAG+TGG 0.552030 4_4:-20836678 Msa0673940:CDS
AAGGCGGTCCAAGGGAACCT+TGG 0.552221 4_4:-20835650 Msa0673940:CDS
GTGAAAGATGATAATCCTGT+TGG 0.552822 4_4:-20836557 Msa0673940:CDS
CCAGCACGTGGTCAAGTCCA+TGG 0.552842 4_4:-20834608 Msa0673940:CDS
GTTCTGGCACTCAGGGCAAA+GGG 0.553846 4_4:-20835036 Msa0673940:CDS
TGCTACCATTGATTTGGAGA+AGG 0.554396 4_4:-20836687 Msa0673940:CDS
CAAAACATTGAGGAAACTGT+TGG 0.557099 4_4:-20836737 Msa0673940:CDS
GGAAACTGTTGGTCTTGGAA+AGG 0.558000 4_4:-20836726 Msa0673940:CDS
CCAAACTAAGTAGTGAGGAT+AGG 0.559043 4_4:+20834311 None:intergenic
CAACATCAACCAAAGATCAA+TGG 0.560182 4_4:-20834696 Msa0673940:CDS
TGAATGGTGAGGAAATTGAT+AGG 0.560352 4_4:-20836490 Msa0673940:CDS
TTCCGGATGATCACGAGACA+TGG 0.561317 4_4:-20835479 Msa0673940:CDS
GATATTAAGCCTGAAGACAT+TGG 0.562253 4_4:-20835240 Msa0673940:CDS
TCTTCATGCTACTATCTATG+AGG 0.563357 4_4:-20837813 Msa0673940:CDS
GGATTTACTTGTCTCTCTAA+GGG 0.563588 4_4:-20835541 Msa0673940:CDS
GATGACGAATACATAATCGT+TGG 0.564804 4_4:-20834725 Msa0673940:CDS
ATACCGAAATTTCCTTGGTG+AGG 0.565309 4_4:-20836139 Msa0673940:CDS
AACGATGGAGGAAGCAAGGT+GGG 0.565356 4_4:-20835566 Msa0673940:CDS
AAAGACCGCAGCTGGGCTCG+AGG 0.565566 4_4:-20836383 Msa0673940:CDS
GGATATCGTTCTGGCACTCA+GGG 0.565745 4_4:-20835043 Msa0673940:CDS
CGGTTCAAGCAATATTGGAC+TGG 0.566255 4_4:-20835095 Msa0673940:CDS
TTATGAGTAAGATTGAAGCC+GGG 0.567721 4_4:-20835179 Msa0673940:CDS
AAGTAGTGAGGATAGGAGGG+AGG 0.571376 4_4:+20834318 None:intergenic
TGGGATGATAGAACATCGGT+TGG 0.573109 4_4:-20836023 Msa0673940:CDS
TGTCTTGCAGCTAAATGGTA+GGG 0.573776 4_4:+20834632 None:intergenic
CCGCCATCATCAGGATTGCG+GGG 0.573969 4_4:+20835912 None:intergenic
ACTTTCTTCTCACAGAGGAA+AGG 0.574250 4_4:-20836326 Msa0673940:CDS
TACTCATCACCAGAAGATTG+TGG 0.574698 4_4:-20835853 Msa0673940:CDS
GATAAGCTTAATGCTGGTGG+TGG 0.575966 4_4:-20837788 Msa0673940:CDS
GAATGCCTCGAGCCCAGCTG+CGG 0.576491 4_4:+20836378 None:intergenic
TACCGCCATCATCAGGATTG+CGG 0.579693 4_4:+20835910 None:intergenic
ACTAAGTAGTGAGGATAGGA+GGG 0.580152 4_4:+20834315 None:intergenic
GGATAGCGAAGCAAGTGTCC+AGG 0.581630 4_4:+20834437 None:intergenic
CCTGTCGAGGAGGTCTTGAA+TGG 0.582151 4_4:-20836506 Msa0673940:CDS
AGCTGGGCTTATTAGTGGAA+AGG 0.583055 4_4:-20835382 Msa0673940:CDS
TGCTTTGCATCTCATCCCAA+AGG 0.583132 4_4:-20835217 Msa0673940:CDS
GAATCCGAGCCTTGGTGTCG+GGG 0.583277 4_4:+20834360 None:intergenic
GCAAGACTTATGAGCCTCAT+CGG 0.583714 4_4:-20836232 Msa0673940:CDS
TAGGTTGATGAAAATCATCA+TGG 0.587769 4_4:+20835697 None:intergenic
ACAGATCAGGCAAAACATTG+AGG 0.589416 4_4:-20836747 Msa0673940:intron
AAAGATCAATGGACGGAGCG+AGG 0.593749 4_4:-20834685 Msa0673940:CDS
GAGGGACTCTGAGATAGCGA+TGG 0.594266 4_4:-20834666 Msa0673940:CDS
ATGGAGGAAGCAAGGTGGGA+AGG 0.595810 4_4:-20835562 Msa0673940:CDS
GGAAATGTTACCGGGGATGG+AGG 0.599535 4_4:+20835498 None:intergenic
AGGGACTCTGAGATAGCGAT+GGG 0.600455 4_4:-20834665 Msa0673940:CDS
GAGGTTGATAAGCTTAATGC+TGG 0.603431 4_4:-20837794 Msa0673940:CDS
AAATCAAGAATGTATCCGTA+AGG 0.604233 4_4:-20834522 Msa0673940:CDS
ACATGATATACATTACCGGT+TGG 0.606826 4_4:-20836169 Msa0673940:CDS
CCGATTGGAGTTGCTAGTGA+AGG 0.611060 4_4:-20834416 Msa0673940:CDS
TATGAGTAAGATTGAAGCCG+GGG 0.612358 4_4:-20835178 Msa0673940:CDS
CCTTGGTGAGGGATTCTAGG+AGG 0.613168 4_4:-20836127 Msa0673940:CDS
AAGATCAATGGACGGAGCGA+GGG 0.613208 4_4:-20834684 Msa0673940:CDS
TGTTTAACTTTGAGCAACGA+TGG 0.613445 4_4:-20835581 Msa0673940:CDS
CGGGAATGAATGTCATGCCA+AGG 0.614171 4_4:+20835633 None:intergenic
AACAACACATCCCAAGCGAT+CGG 0.615121 4_4:+20835600 None:intergenic
GATTTGGAGAAGGCAAGAGT+GGG 0.615789 4_4:-20836677 Msa0673940:CDS
AATCACAAAAGGCGGTCCAA+GGG 0.616469 4_4:-20835658 Msa0673940:CDS
TGGTGGAAATTTCCTCAGCA+TGG 0.616523 4_4:-20837768 Msa0673940:intron
GAGCAACGATGGAGGAAGCA+AGG 0.617826 4_4:-20835570 Msa0673940:CDS
TGAATTACCTGGTGGAAGGT+CGG 0.619368 4_4:-20835820 Msa0673940:CDS
CGCCATCATCAGGATTGCGG+GGG 0.619690 4_4:+20835913 None:intergenic
TGGAGAAGGCAAGAGTGGGA+AGG 0.621315 4_4:-20836673 Msa0673940:CDS
AGGGAATCGAGGAAGATCCT+CGG 0.622355 4_4:-20835017 Msa0673940:CDS
TCTAGGAGGCCAAAGGCTGG+GGG 0.624607 4_4:-20836113 Msa0673940:CDS
AGCATATGTGCCTGTCGAGG+AGG 0.627896 4_4:-20836516 Msa0673940:CDS
AACAATGGAGATGATGTACA+AGG 0.631124 4_4:-20835064 Msa0673940:CDS
GAACATAGATCATGAAACGT+CGG 0.633210 4_4:+20834884 None:intergenic
TGTTGTCCCAATGTGGCCAG+AGG 0.634138 4_4:-20835136 Msa0673940:CDS
AGTGCAGTGTGACAAAACAA+TGG 0.635050 4_4:+20838306 None:intergenic
GAGGGATTCTAGGAGGCCAA+AGG 0.637811 4_4:-20836120 Msa0673940:CDS
CTTCTGGTGATGAGTAAACA+TGG 0.641961 4_4:+20835860 None:intergenic
CGAGGAGGTCTTGAATGGTG+AGG 0.642464 4_4:-20836501 Msa0673940:CDS
TGAGGAAATTGATAGGTGGG+TGG 0.645001 4_4:-20836483 Msa0673940:CDS
GCATTATGGTATGAGCACCT+TGG 0.646788 4_4:-20834575 Msa0673940:CDS
TGAGCCTCATCGGTGTTGGG+AGG 0.651132 4_4:-20836222 Msa0673940:CDS
AGGAGTCATGAAGCATGCCA+AGG 0.651697 4_4:+20834558 None:intergenic
GTTGTCCCAATGTGGCCAGA+GGG 0.653005 4_4:-20835135 Msa0673940:CDS
AAGAGCATATGTGCCTGTCG+AGG 0.653021 4_4:-20836519 Msa0673940:CDS
AATCGGGAAGTAAAGAAACA+AGG 0.653307 4_4:-20834967 Msa0673940:CDS
TATCATATCTTCCATCACAA+AGG 0.653464 4_4:+20835760 None:intergenic
ATCAACCAAAGATCAATGGA+CGG 0.654662 4_4:-20834692 Msa0673940:CDS
CGTATACTTTCTTCTCACAG+AGG 0.655571 4_4:-20836331 Msa0673940:CDS
AGCGAAGCAAGTGTCCAGGA+AGG 0.657401 4_4:+20834441 None:intergenic
AATAAAACAGTACCATGCTG+AGG 0.661732 4_4:+20837756 None:intergenic
ACAGTGAATTACCTGGTGGA+AGG 0.662406 4_4:-20835824 Msa0673940:CDS
GGGTGTCCCAGAAAGTGCAT+CGG 0.663109 4_4:-20835115 Msa0673940:CDS
CAACGATGGAGGAAGCAAGG+TGG 0.668752 4_4:-20835567 Msa0673940:CDS
AAGAACGTCAAATAATTCCG+AGG 0.670151 4_4:+20835000 None:intergenic
AAGCGATCGGTCCTTCAAGG+CGG 0.671322 4_4:+20835613 None:intergenic
GGTGCTGCAATCACAAAAGG+CGG 0.672665 4_4:-20835666 Msa0673940:CDS
ACTCAGGGCAAAGGGAATCG+AGG 0.672681 4_4:-20835028 Msa0673940:CDS
ATGGTGAGGAAATTGATAGG+TGG 0.675988 4_4:-20836487 Msa0673940:CDS
CCCCGCAATCCTGATGATGG+CGG 0.678364 4_4:-20835912 Msa0673940:CDS
TCTTTACTTCCCGATTACCG+AGG 0.680953 4_4:+20834974 None:intergenic
ATATCCTCCCAACACCGATG+AGG 0.682280 4_4:+20836218 None:intergenic
TGTTTGGGATGATAGAACAT+CGG 0.683265 4_4:-20836027 Msa0673940:CDS
TGTACGTTGTTGTCCCAATG+TGG 0.686098 4_4:-20835143 Msa0673940:CDS
GCTGCAAGACAGCCAGCACG+TGG 0.687862 4_4:-20834620 Msa0673940:CDS
TGTCACGAAAGACCGCAGCT+GGG 0.688731 4_4:-20836390 Msa0673940:CDS
GTTGATAAGCTTAATGCTGG+TGG 0.689428 4_4:-20837791 Msa0673940:CDS
ACCAAGGCTCGGATTCTCGG+CGG 0.691037 4_4:-20834353 Msa0673940:CDS
ATAATGCCATGCGAAAACCA+TGG 0.691651 4_4:+20834591 None:intergenic
CCTAAAATACCACTTTCTGG+TGG 0.698637 4_4:-20836254 Msa0673940:CDS
GTTGTGGACAGTGAATTACC+TGG 0.700680 4_4:-20835831 Msa0673940:CDS
ATCATCCGGAAATGTTACCG+GGG 0.705073 4_4:+20835491 None:intergenic
TTAACTTTGAGCAACGATGG+AGG 0.710551 4_4:-20835578 Msa0673940:CDS
CCTCCTAGAATCCCTCACCA+AGG 0.715713 4_4:+20836127 None:intergenic
GGACTGGCAGAGGAGAACAA+TGG 0.727822 4_4:-20835079 Msa0673940:CDS
AGTACCTTCAAAGAACTGTG+CGG 0.748352 4_4:+20835956 None:intergenic
CTGGTGATGAGTAAACATGG+TGG 0.787330 4_4:+20835863 None:intergenic
GTGGACAGTGAATTACCTGG+TGG 0.811877 4_4:-20835828 Msa0673940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTATTTTTTTAAAATT+CGG + chr4_4:20834518-20834537 None:intergenic 0.0%
!!! ATCAAAAAGTTTTTTTTTTA+TGG - chr4_4:20834554-20834573 Msa0673940:CDS 10.0%
!!! ACTGTTTTATTTAATTATTT+TGG - chr4_4:20834720-20834739 Msa0673940:CDS 10.0%
!!! ATTTTTAGATTTCATGTTTT+TGG - chr4_4:20834769-20834788 Msa0673940:intron 15.0%
!!! AAAAAAAAAGAATATTTTGG+TGG - chr4_4:20834848-20834867 Msa0673940:intron 15.0%
!! TAAGTATAAGCAAATAAATA+GGG + chr4_4:20835696-20835715 None:intergenic 15.0%
!! ATAAGTATAAGCAAATAAAT+AGG + chr4_4:20835697-20835716 None:intergenic 15.0%
!!! TTTTTAAACAGAGGAAAATA+AGG + chr4_4:20834113-20834132 None:intergenic 20.0%
!! TTGAATCATTAGATCTAAAT+AGG + chr4_4:20834746-20834765 None:intergenic 20.0%
!! TAATATTGACAATTAACCAA+CGG + chr4_4:20835091-20835110 None:intergenic 20.0%
!! ATGCTTATATTAATGCTATT+CGG - chr4_4:20837132-20837151 Msa0673940:intron 20.0%
!! AAATTACTGTCATAAATTAC+AGG - chr4_4:20837631-20837650 Msa0673940:intron 20.0%
!! AAATCACAAAAATCTGTATT+TGG + chr4_4:20838317-20838336 None:intergenic 20.0%
! AAAGAGTTAAATCAGATCAA+TGG + chr4_4:20834340-20834359 None:intergenic 25.0%
!!! AAAAAAGAATATTTTGGTGG+TGG - chr4_4:20834851-20834870 Msa0673940:intron 25.0%
!!! AAAAAGAATATTTTGGTGGT+GGG - chr4_4:20834852-20834871 Msa0673940:intron 25.0%
! AATATTGACAATTAACCAAC+GGG + chr4_4:20835090-20835109 None:intergenic 25.0%
! GATAAAGTTAATGGTTATTC+AGG + chr4_4:20835405-20835424 None:intergenic 25.0%
! GATGCATAAGATAAAGTTAA+TGG + chr4_4:20835414-20835433 None:intergenic 25.0%
!!! TAATTTGCTTGATTTAGCTT+TGG + chr4_4:20835573-20835592 None:intergenic 25.0%
! TGTTTATACATACATTGACA+TGG - chr4_4:20835607-20835626 Msa0673940:CDS 25.0%
! AATAGGGTCATTAATAATGA+AGG + chr4_4:20835680-20835699 None:intergenic 25.0%
!!! ATTTTAGGGATGAAATTATC+CGG + chr4_4:20836198-20836217 None:intergenic 25.0%
! AAACACATGATATACATTAC+CGG - chr4_4:20836291-20836310 Msa0673940:CDS 25.0%
! ATTGAAAATCAGTATTTCCT+TGG - chr4_4:20837176-20837195 Msa0673940:intron 25.0%
!! TGGTAATGAAAACAAAGATT+AGG + chr4_4:20838224-20838243 None:intergenic 25.0%
!!! TTTGTTTTCATTACCATTTG+TGG - chr4_4:20838228-20838247 Msa0673940:intron 25.0%
!!! AAGTCTCTGTTTTTAAACAG+AGG + chr4_4:20834122-20834141 None:intergenic 30.0%
GGAAGATGAAGAGAATAAAA+GGG + chr4_4:20834208-20834227 None:intergenic 30.0%
AGGAAGATGAAGAGAATAAA+AGG + chr4_4:20834209-20834228 None:intergenic 30.0%
TTCACATTCTCTTCAAAACT+TGG - chr4_4:20834230-20834249 Msa0673940:three_prime_UTR 30.0%
AGTTAAATCAGATCAATGGT+TGG + chr4_4:20834336-20834355 None:intergenic 30.0%
!! GTTTTGTTCTGACTTTAAGT+AGG - chr4_4:20834454-20834473 Msa0673940:CDS 30.0%
! TGTGATTTGTAGGTGAAAAA+TGG - chr4_4:20834606-20834625 Msa0673940:CDS 30.0%
!!! AAAAGAATATTTTGGTGGTG+GGG - chr4_4:20834853-20834872 Msa0673940:intron 30.0%
AAAGCAAAATCCAATGAGTA+AGG + chr4_4:20835489-20835508 None:intergenic 30.0%
! TTGGATTTTGCTTTCGTTAT+TGG - chr4_4:20835495-20835514 Msa0673940:CDS 30.0%
TACATTGCACATACATACAT+AGG - chr4_4:20835524-20835543 Msa0673940:CDS 30.0%
!! TGATTTAGCTTTGGTTATTC+AGG + chr4_4:20835564-20835583 None:intergenic 30.0%
AAACGCAAAACTAAAGAAAC+TGG + chr4_4:20835647-20835666 None:intergenic 30.0%
TGCTTATACTTATACAGATC+AGG - chr4_4:20835704-20835723 Msa0673940:CDS 30.0%
TGAAAAGACTCATACCATTT+GGG + chr4_4:20835847-20835866 None:intergenic 30.0%
! GTATATCATGTGTTTTGCAT+TGG + chr4_4:20836286-20836305 None:intergenic 30.0%
TGTTTATACCGAAATTTCCT+TGG - chr4_4:20836320-20836339 Msa0673940:CDS 30.0%
CTAAAGAAAAAGTCTAGTGA+AGG - chr4_4:20836396-20836415 Msa0673940:CDS 30.0%
!!! GAAGAATTGTGAGTTTTGTT+GGG - chr4_4:20836673-20836692 Msa0673940:CDS 30.0%
!!! AAGAATTGTGAGTTTTGTTG+GGG - chr4_4:20836674-20836693 Msa0673940:CDS 30.0%
TATCATATCTTCCATCACAA+AGG + chr4_4:20836707-20836726 None:intergenic 30.0%
!! TAGGTTGATGAAAATCATCA+TGG + chr4_4:20836770-20836789 None:intergenic 30.0%
! TGTTTAGATCTATTGATGGT+GGG - chr4_4:20837018-20837037 Msa0673940:intron 30.0%
TCTTAAGTGAAAGTTCCTTT+GGG + chr4_4:20837265-20837284 None:intergenic 30.0%
ATCTTAAGTGAAAGTTCCTT+TGG + chr4_4:20837266-20837285 None:intergenic 30.0%
ATTATGAGTAAGATTGAAGC+CGG - chr4_4:20837284-20837303 Msa0673940:intron 30.0%
AAACTTACCTATCATCATCT+TGG + chr4_4:20837609-20837628 None:intergenic 30.0%
! ATTCTTGATTTTCTGGATGA+AGG + chr4_4:20837933-20837952 None:intergenic 30.0%
AAATCAAGAATGTATCCGTA+AGG - chr4_4:20837942-20837961 Msa0673940:intron 30.0%
AAAAACCAAACTAAGTAGTG+AGG + chr4_4:20838161-20838180 None:intergenic 30.0%
TTCAAAGTTCAAACCACAAA+TGG + chr4_4:20838244-20838263 None:intergenic 30.0%
GTGACAAAACAATGGATCAT+AGG + chr4_4:20834153-20834172 None:intergenic 35.0%
!!! GTTTTGAAGAGAATGTGAAG+AGG + chr4_4:20834229-20834248 None:intergenic 35.0%
TTGTGTGATCTGATGAGAAA+TGG - chr4_4:20834578-20834597 Msa0673940:CDS 35.0%
TGTGTGATCTGATGAGAAAT+GGG - chr4_4:20834579-20834598 Msa0673940:CDS 35.0%
ATGGCACAAATTCATCTTCA+TGG - chr4_4:20834625-20834644 Msa0673940:CDS 35.0%
TCTTCATGCTACTATCTATG+AGG - chr4_4:20834651-20834670 Msa0673940:CDS 35.0%
AATAAAACAGTACCATGCTG+AGG + chr4_4:20834711-20834730 None:intergenic 35.0%
CATCTGTTACAAATTAGGCA+TGG + chr4_4:20835188-20835207 None:intergenic 35.0%
! CATGCCTAATTTGTAACAGA+TGG - chr4_4:20835186-20835205 Msa0673940:CDS 35.0%
! CCTAATTTGTAACAGATGGT+GGG - chr4_4:20835190-20835209 Msa0673940:CDS 35.0%
! CTAATTTGTAACAGATGGTG+GGG - chr4_4:20835191-20835210 Msa0673940:CDS 35.0%
! TTTAAGGTGGCTCAAAATGA+CGG - chr4_4:20835223-20835242 Msa0673940:CDS 35.0%
CACAAAGTAGTTTCAATCGA+AGG + chr4_4:20835362-20835381 None:intergenic 35.0%
CAAAACATTGAGGAAACTGT+TGG - chr4_4:20835727-20835746 Msa0673940:CDS 35.0%
! ACTCTATGCTACCATTGATT+TGG - chr4_4:20835771-20835790 Msa0673940:CDS 35.0%
ATGAGCATACTAATCCCAAA+TGG - chr4_4:20835830-20835849 Msa0673940:CDS 35.0%
GTGAAAAGACTCATACCATT+TGG + chr4_4:20835848-20835867 None:intergenic 35.0%
TCACATTTACTGTGCTCATA+TGG - chr4_4:20835864-20835883 Msa0673940:CDS 35.0%
GTGAAAGATGATAATCCTGT+TGG - chr4_4:20835907-20835926 Msa0673940:CDS 35.0%
TGAATGGTGAGGAAATTGAT+AGG - chr4_4:20835974-20835993 Msa0673940:CDS 35.0%
TGAAAAAAACCCGATACAAG+AGG - chr4_4:20836017-20836036 Msa0673940:CDS 35.0%
GAAAAAAACCCGATACAAGA+GGG - chr4_4:20836018-20836037 Msa0673940:CDS 35.0%
CAAAATATTGCAGCTTCACA+TGG + chr4_4:20836053-20836072 None:intergenic 35.0%
! ATTCAAAGCGCTAAATTTCC+TGG - chr4_4:20836105-20836124 Msa0673940:CDS 35.0%
! CTCTGTGAGAAGAAAGTATA+CGG + chr4_4:20836135-20836154 None:intergenic 35.0%
ATCCCTAAAATACCACTTTC+TGG - chr4_4:20836207-20836226 Msa0673940:CDS 35.0%
! CACCAGAAAGTGGTATTTTA+GGG + chr4_4:20836212-20836231 None:intergenic 35.0%
ACATGATATACATTACCGGT+TGG - chr4_4:20836295-20836314 Msa0673940:CDS 35.0%
!! AAAAGTCTAGTGAAGGTGTT+AGG - chr4_4:20836403-20836422 Msa0673940:CDS 35.0%
!! AAAGTCTAGTGAAGGTGTTA+GGG - chr4_4:20836404-20836423 Msa0673940:CDS 35.0%
!! TTAGGGTTTTGATGCTTGTT+TGG - chr4_4:20836421-20836440 Msa0673940:CDS 35.0%
!! TAGGGTTTTGATGCTTGTTT+GGG - chr4_4:20836422-20836441 Msa0673940:CDS 35.0%
! TGTTTGGGATGATAGAACAT+CGG - chr4_4:20836437-20836456 Msa0673940:CDS 35.0%
!! ATCGGTTGGTTTGTTGAAAA+AGG - chr4_4:20836455-20836474 Msa0673940:CDS 35.0%
!! GTTGGTTTGTTGAAAAAGGA+TGG - chr4_4:20836459-20836478 Msa0673940:CDS 35.0%
!! GTTGAAAAAGGATGGATTGA+TGG - chr4_4:20836467-20836486 Msa0673940:CDS 35.0%
!! CGAAGAATTGTGAGTTTTGT+TGG - chr4_4:20836672-20836691 Msa0673940:CDS 35.0%
!!! AGAATTGTGAGTTTTGTTGG+GGG - chr4_4:20836675-20836694 Msa0673940:CDS 35.0%
!! GTTCTAAAAAGTGAGTGGAA+TGG + chr4_4:20836732-20836751 None:intergenic 35.0%
!! CAAGAGTTCTAAAAAGTGAG+TGG + chr4_4:20836737-20836756 None:intergenic 35.0%
TTTCATCAACCTAACTTTCC+AGG - chr4_4:20836777-20836796 Msa0673940:intron 35.0%
! TGTTTAACTTTGAGCAACGA+TGG - chr4_4:20836883-20836902 Msa0673940:intron 35.0%
AGGATTTACTTGTCTCTCTA+AGG - chr4_4:20836922-20836941 Msa0673940:intron 35.0%
GGATTTACTTGTCTCTCTAA+GGG - chr4_4:20836923-20836942 Msa0673940:intron 35.0%
CAGCTGTTTAGATCTATTGA+TGG - chr4_4:20837014-20837033 Msa0673940:intron 35.0%
CTGTTTAGATCTATTGATGG+TGG - chr4_4:20837017-20837036 Msa0673940:intron 35.0%
!! GTTTAGATCTATTGATGGTG+GGG - chr4_4:20837019-20837038 Msa0673940:intron 35.0%
GATATTAAGCCTGAAGACAT+TGG - chr4_4:20837224-20837243 Msa0673940:intron 35.0%
TTATGAGTAAGATTGAAGCC+GGG - chr4_4:20837285-20837304 Msa0673940:intron 35.0%
AACAATGGAGATGATGTACA+AGG - chr4_4:20837400-20837419 Msa0673940:intron 35.0%
AAGAACGTCAAATAATTCCG+AGG + chr4_4:20837467-20837486 None:intergenic 35.0%
AATCGGGAAGTAAAGAAACA+AGG - chr4_4:20837497-20837516 Msa0673940:intron 35.0%
AACATAGATCATGAAACGTC+GGG + chr4_4:20837582-20837601 None:intergenic 35.0%
GAACATAGATCATGAAACGT+CGG + chr4_4:20837583-20837602 None:intergenic 35.0%
GTTCATACCAAGATGATGAT+AGG - chr4_4:20837599-20837618 Msa0673940:intron 35.0%
GATGACGAATACATAATCGT+TGG - chr4_4:20837739-20837758 Msa0673940:intron 35.0%
! CATTGATCTTTGGTTGATGT+TGG + chr4_4:20837770-20837789 None:intergenic 35.0%
CAACATCAACCAAAGATCAA+TGG - chr4_4:20837768-20837787 Msa0673940:intron 35.0%
ATCAACCAAAGATCAATGGA+CGG - chr4_4:20837772-20837791 Msa0673940:CDS 35.0%
! TTGATTTTCTGGATGAAGGA+AGG + chr4_4:20837929-20837948 None:intergenic 35.0%
! CGGATACATTCTTGATTTTC+TGG + chr4_4:20837940-20837959 None:intergenic 35.0%
ACCAGATTGCTGACAAATAT+TGG - chr4_4:20837968-20837987 Msa0673940:intron 35.0%
CCAGATTGCTGACAAATATT+GGG - chr4_4:20837969-20837988 Msa0673940:intron 35.0%
TTAACTGCTATGACTTTAGC+TGG - chr4_4:20838344-20838363 Msa0673940:five_prime_UTR 35.0%
AGTGCAGTGTGACAAAACAA+TGG + chr4_4:20834161-20834180 None:intergenic 40.0%
! TTGTCACACTGCACTTTTCT+CGG - chr4_4:20834166-20834185 Msa0673940:three_prime_UTR 40.0%
GTGTGATCTGATGAGAAATG+GGG - chr4_4:20834580-20834599 Msa0673940:CDS 40.0%
! AATGGGGTTGTGTGATTTGT+AGG - chr4_4:20834596-20834615 Msa0673940:CDS 40.0%
!! GAGGTTGATAAGCTTAATGC+TGG - chr4_4:20834670-20834689 Msa0673940:CDS 40.0%
! GTTGATAAGCTTAATGCTGG+TGG - chr4_4:20834673-20834692 Msa0673940:CDS 40.0%
ACAGATCCTAAAAGCAAGCA+GGG + chr4_4:20834901-20834920 None:intergenic 40.0%
TTACAAATTAGGCATGGCAG+TGG + chr4_4:20835182-20835201 None:intergenic 40.0%
! GCCTAATTTGTAACAGATGG+TGG - chr4_4:20835189-20835208 Msa0673940:CDS 40.0%
CCCACCATCTGTTACAAATT+AGG + chr4_4:20835193-20835212 None:intergenic 40.0%
! TCAGTGTTATCGATTGCAGA+TGG + chr4_4:20835274-20835293 None:intergenic 40.0%
ACAGATCAGGCAAAACATTG+AGG - chr4_4:20835717-20835736 Msa0673940:CDS 40.0%
! ATTGAGGAAACTGTTGGTCT+TGG - chr4_4:20835733-20835752 Msa0673940:CDS 40.0%
!! GAAACTGTTGGTCTTGGAAA+GGG - chr4_4:20835739-20835758 Msa0673940:CDS 40.0%
!! TGCTACCATTGATTTGGAGA+AGG - chr4_4:20835777-20835796 Msa0673940:CDS 40.0%
TCTTGCCTTCTCCAAATCAA+TGG + chr4_4:20835785-20835804 None:intergenic 40.0%
CCTGTTGGAGCAACTTTAAT+CGG - chr4_4:20835922-20835941 Msa0673940:CDS 40.0%
ATGGTGAGGAAATTGATAGG+TGG - chr4_4:20835977-20835996 Msa0673940:CDS 40.0%
TGGTGAGGAAATTGATAGGT+GGG - chr4_4:20835978-20835997 Msa0673940:CDS 40.0%
! TGATAGGTGGGTGGAAATTT+TGG - chr4_4:20835990-20836009 Msa0673940:CDS 40.0%
ATCTTCGAACCCTCTTGTAT+CGG + chr4_4:20836030-20836049 None:intergenic 40.0%
! AAGAAAGTATACGGAACTCC+AGG + chr4_4:20836126-20836145 None:intergenic 40.0%
CGTATACTTTCTTCTCACAG+AGG - chr4_4:20836133-20836152 Msa0673940:CDS 40.0%
ACTTTCTTCTCACAGAGGAA+AGG - chr4_4:20836138-20836157 Msa0673940:CDS 40.0%
TTACCAAGATTCTCATGTGC+CGG - chr4_4:20836176-20836195 Msa0673940:CDS 40.0%
! CCACCAGAAAGTGGTATTTT+AGG + chr4_4:20836213-20836232 None:intergenic 40.0%
CCTAAAATACCACTTTCTGG+TGG - chr4_4:20836210-20836229 Msa0673940:CDS 40.0%
!! CATGTGTTTTGCATTGGTGA+TGG + chr4_4:20836280-20836299 None:intergenic 40.0%
TTCGGTATAAACAGACCAAC+CGG + chr4_4:20836313-20836332 None:intergenic 40.0%
ATACCGAAATTTCCTTGGTG+AGG - chr4_4:20836325-20836344 Msa0673940:CDS 40.0%
TACCGAAATTTCCTTGGTGA+GGG - chr4_4:20836326-20836345 Msa0673940:CDS 40.0%
ATCCCTCACCAAGGAAATTT+CGG + chr4_4:20836331-20836350 None:intergenic 40.0%
AGTACCTTCAAAGAACTGTG+CGG + chr4_4:20836511-20836530 None:intergenic 40.0%
! CTTCTGGTGATGAGTAAACA+TGG + chr4_4:20836607-20836626 None:intergenic 40.0%
TACTCATCACCAGAAGATTG+TGG - chr4_4:20836611-20836630 Msa0673940:CDS 40.0%
TTAACTTTGAGCAACGATGG+AGG - chr4_4:20836886-20836905 Msa0673940:intron 40.0%
TTCTATTATTCCTCCATCCC+CGG - chr4_4:20836956-20836975 Msa0673940:intron 40.0%
TGATCATCCGGAAATGTTAC+CGG + chr4_4:20836978-20836997 None:intergenic 40.0%
TATGAGTAAGATTGAAGCCG+GGG - chr4_4:20837286-20837305 Msa0673940:intron 40.0%
!! TGCATCGGTTCAAGCAATAT+TGG - chr4_4:20837364-20837383 Msa0673940:intron 40.0%
GATGTACAAGGATATCGTTC+TGG - chr4_4:20837412-20837431 Msa0673940:intron 40.0%
TATTTGACGTTCTTCTGCCT+CGG - chr4_4:20837473-20837492 Msa0673940:intron 40.0%
TCGTAATCTGAATCAGGTTC+TGG + chr4_4:20837545-20837564 None:intergenic 40.0%
TGTCTTGCAGCTAAATGGTA+GGG + chr4_4:20837835-20837854 None:intergenic 40.0%
ATAATGCCATGCGAAAACCA+TGG + chr4_4:20837876-20837895 None:intergenic 40.0%
! ATGGTTTTCGCATGGCATTA+TGG - chr4_4:20837875-20837894 Msa0673940:intron 40.0%
CCCAATATTTGTCAGCAATC+TGG + chr4_4:20837972-20837991 None:intergenic 40.0%
TCGGGGAAAAATTCAAATCC+AGG + chr4_4:20838090-20838109 None:intergenic 40.0%
ACTAAGTAGTGAGGATAGGA+GGG + chr4_4:20838152-20838171 None:intergenic 40.0%
AACTAAGTAGTGAGGATAGG+AGG + chr4_4:20838153-20838172 None:intergenic 40.0%
CCAAACTAAGTAGTGAGGAT+AGG + chr4_4:20838156-20838175 None:intergenic 40.0%
CCTATCCTCACTACTTAGTT+TGG - chr4_4:20838153-20838172 Msa0673940:intron 40.0%
GATAAGCTTAATGCTGGTGG+TGG - chr4_4:20834676-20834695 Msa0673940:CDS 45.0%
TGGTGGAAATTTCCTCAGCA+TGG - chr4_4:20834696-20834715 Msa0673940:CDS 45.0%
GGATCACTGATGCATCAAAG+TGG - chr4_4:20834874-20834893 Msa0673940:CDS 45.0%
CACAGATCCTAAAAGCAAGC+AGG + chr4_4:20834902-20834921 None:intergenic 45.0%
AAGTCTCATCACAGATTCGC+TGG + chr4_4:20834996-20835015 None:intergenic 45.0%
! CCAACGGGTTTGCAAATGAT+CGG + chr4_4:20835075-20835094 None:intergenic 45.0%
TGAGCCACCTTAAAACTCCA+TGG + chr4_4:20835217-20835236 None:intergenic 45.0%
!!! GGCTCAAAATGACGGACTTT+TGG - chr4_4:20835231-20835250 Msa0673940:CDS 45.0%
! GTGTTATCGATTGCAGATGG+CGG + chr4_4:20835271-20835290 None:intergenic 45.0%
TGCTTCAGCACCTTACTCAT+TGG - chr4_4:20835476-20835495 Msa0673940:CDS 45.0%
!! GGAAACTGTTGGTCTTGGAA+AGG - chr4_4:20835738-20835757 Msa0673940:CDS 45.0%
! TGATTTGGAGAAGGCAAGAG+TGG - chr4_4:20835786-20835805 Msa0673940:CDS 45.0%
GATTTGGAGAAGGCAAGAGT+GGG - chr4_4:20835787-20835806 Msa0673940:CDS 45.0%
CCGATTAAAGTTGCTCCAAC+AGG + chr4_4:20835925-20835944 None:intergenic 45.0%
TGAGGAAATTGATAGGTGGG+TGG - chr4_4:20835981-20836000 Msa0673940:CDS 45.0%
TCTTCGAACCCTCTTGTATC+GGG + chr4_4:20836029-20836048 None:intergenic 45.0%
CTCACAGAGGAAAGGATGTA+AGG - chr4_4:20836146-20836165 Msa0673940:CDS 45.0%
TATCCGGCACATGAGAATCT+TGG + chr4_4:20836182-20836201 None:intergenic 45.0%
TAAGTCTTGCCACCAGAAAG+TGG + chr4_4:20836222-20836241 None:intergenic 45.0%
GCAAGACTTATGAGCCTCAT+CGG - chr4_4:20836232-20836251 Msa0673940:CDS 45.0%
! TTATGAGCCTCATCGGTGTT+GGG - chr4_4:20836239-20836258 Msa0673940:CDS 45.0%
TTTCCTTGGTGAGGGATTCT+AGG - chr4_4:20836334-20836353 Msa0673940:CDS 45.0%
TGGGATGATAGAACATCGGT+TGG - chr4_4:20836441-20836460 Msa0673940:CDS 45.0%
GAAACCGCACAGTTCTTTGA+AGG - chr4_4:20836504-20836523 Msa0673940:CDS 45.0%
! CTGGTGATGAGTAAACATGG+TGG + chr4_4:20836604-20836623 None:intergenic 45.0%
TCACCAGAAGATTGTGGTTG+TGG - chr4_4:20836617-20836636 Msa0673940:CDS 45.0%
TGTCCACAACCACAATCTTC+TGG + chr4_4:20836623-20836642 None:intergenic 45.0%
GTTGTGGACAGTGAATTACC+TGG - chr4_4:20836633-20836652 Msa0673940:CDS 45.0%
ACAGTGAATTACCTGGTGGA+AGG - chr4_4:20836640-20836659 Msa0673940:CDS 45.0%
TGAATTACCTGGTGGAAGGT+CGG - chr4_4:20836644-20836663 Msa0673940:CDS 45.0%
ATTGCAGCACCTGGAAAGTT+AGG + chr4_4:20836789-20836808 None:intergenic 45.0%
AATCACAAAAGGCGGTCCAA+GGG - chr4_4:20836806-20836825 Msa0673940:intron 45.0%
AACAACACATCCCAAGCGAT+CGG + chr4_4:20836867-20836886 None:intergenic 45.0%
ATCATCCGGAAATGTTACCG+GGG + chr4_4:20836976-20836995 None:intergenic 45.0%
GATCATCCGGAAATGTTACC+GGG + chr4_4:20836977-20836996 None:intergenic 45.0%
TTCCATGTCTCGTGATCATC+CGG + chr4_4:20836990-20837009 None:intergenic 45.0%
CAGCATCTTCAGGAGTTTCT+GGG + chr4_4:20837058-20837077 None:intergenic 45.0%
AGCTGGGCTTATTAGTGGAA+AGG - chr4_4:20837082-20837101 Msa0673940:intron 45.0%
! TCCTTGGAAGCTCTTTTGCT+TGG - chr4_4:20837192-20837211 Msa0673940:intron 45.0%
TCCAAGCAAAAGAGCTTCCA+AGG + chr4_4:20837196-20837215 None:intergenic 45.0%
! TGCAAAGCACCAATGTCTTC+AGG + chr4_4:20837236-20837255 None:intergenic 45.0%
TGCTTTGCATCTCATCCCAA+AGG - chr4_4:20837247-20837266 Msa0673940:intron 45.0%
! GTACACAGTGAACTTTTCCC+CGG + chr4_4:20837306-20837325 None:intergenic 45.0%
TGTACGTTGTTGTCCCAATG+TGG - chr4_4:20837321-20837340 Msa0673940:intron 45.0%
CTTGAACCGATGCACTTTCT+GGG + chr4_4:20837358-20837377 None:intergenic 45.0%
CGGTTCAAGCAATATTGGAC+TGG - chr4_4:20837369-20837388 Msa0673940:intron 45.0%
!! AAGCAATATTGGACTGGCAG+AGG - chr4_4:20837375-20837394 Msa0673940:intron 45.0%
TCTTTACTTCCCGATTACCG+AGG + chr4_4:20837493-20837512 None:intergenic 45.0%
! TCAGGTTCTGGTTGTTCAGA+AGG + chr4_4:20837533-20837552 None:intergenic 45.0%
GCTCTCTCGTAATCTGAATC+AGG + chr4_4:20837551-20837570 None:intergenic 45.0%
AGCTAAATGGTAGGGCTGAT+AGG + chr4_4:20837827-20837846 None:intergenic 45.0%
CTGTCTTGCAGCTAAATGGT+AGG + chr4_4:20837836-20837855 None:intergenic 45.0%
! TCAAGTCCATGGTTTTCGCA+TGG - chr4_4:20837867-20837886 Msa0673940:intron 45.0%
GCATTATGGTATGAGCACCT+TGG - chr4_4:20837889-20837908 Msa0673940:intron 45.0%
! CAGCAATCTGGTTCACCTTA+CGG + chr4_4:20837960-20837979 None:intergenic 45.0%
CCTTCACTAGCAACTCCAAT+CGG + chr4_4:20838051-20838070 None:intergenic 45.0%
! TGAATTTTTCCCCGACACCA+AGG - chr4_4:20838095-20838114 Msa0673940:intron 45.0%
!!! TAAAAAAAAAAAGAATATTT+TGG - chr4_4:20834845-20834864 Msa0673940:intron 5.0%
CTTTAAGTAGGCCCCGTTAG+TGG - chr4_4:20834466-20834485 Msa0673940:CDS 50.0%
!! AAGCTTAATGCTGGTGGTGG+TGG - chr4_4:20834679-20834698 Msa0673940:CDS 50.0%
!! AGTGGACCCTGCTTGCTTTT+AGG - chr4_4:20834892-20834911 Msa0673940:CDS 50.0%
CCGATCATTTGCAAACCCGT+TGG - chr4_4:20835072-20835091 Msa0673940:CDS 50.0%
AGTGGCCAAAATATCCGCCA+TGG + chr4_4:20835164-20835183 None:intergenic 50.0%
!!! GGACTTTTGGCTTTCCACCA+TGG - chr4_4:20835244-20835263 Msa0673940:CDS 50.0%
! AAGAGCATATGTGCCTGTCG+AGG - chr4_4:20835945-20835964 Msa0673940:CDS 50.0%
CTTATGAGCCTCATCGGTGT+TGG - chr4_4:20836238-20836257 Msa0673940:CDS 50.0%
ATATCCTCCCAACACCGATG+AGG + chr4_4:20836249-20836268 None:intergenic 50.0%
! ATTCTAGGAGGCCAAAGGCT+GGG - chr4_4:20836349-20836368 Msa0673940:CDS 50.0%
TACCGCCATCATCAGGATTG+CGG + chr4_4:20836557-20836576 None:intergenic 50.0%
ATGATGCTACCGCCATCATC+AGG + chr4_4:20836564-20836583 None:intergenic 50.0%
!! TGATGGCGGTAGCATCATTC+AGG - chr4_4:20836566-20836585 Msa0673940:CDS 50.0%
GTGGACAGTGAATTACCTGG+TGG - chr4_4:20836636-20836655 Msa0673940:CDS 50.0%
! CCTTTTGTGATTGCAGCACC+TGG + chr4_4:20836798-20836817 None:intergenic 50.0%
! CCAGGTGCTGCAATCACAAA+AGG - chr4_4:20836795-20836814 Msa0673940:intron 50.0%
! GGTGCTGCAATCACAAAAGG+CGG - chr4_4:20836798-20836817 Msa0673940:intron 50.0%
CAATCACAAAAGGCGGTCCA+AGG - chr4_4:20836805-20836824 Msa0673940:intron 50.0%
ATGTCATGCCAAGGTTCCCT+TGG + chr4_4:20836825-20836844 None:intergenic 50.0%
CGGGAATGAATGTCATGCCA+AGG + chr4_4:20836834-20836853 None:intergenic 50.0%
GACATTCATTCCCGCCTTGA+AGG - chr4_4:20836840-20836859 Msa0673940:intron 50.0%
AACGATGGAGGAAGCAAGGT+GGG - chr4_4:20836898-20836917 Msa0673940:intron 50.0%
TCCATCCCCGGTAACATTTC+CGG - chr4_4:20836968-20836987 Msa0673940:intron 50.0%
TTCCGGATGATCACGAGACA+TGG - chr4_4:20836985-20837004 Msa0673940:intron 50.0%
!!! ATTGATGGTGGGGCTGCTTT+TGG - chr4_4:20837029-20837048 Msa0673940:intron 50.0%
!!! TTGATGGTGGGGCTGCTTTT+GGG - chr4_4:20837030-20837049 Msa0673940:intron 50.0%
GCAGCATCTTCAGGAGTTTC+TGG + chr4_4:20837059-20837078 None:intergenic 50.0%
! GGAAGCTCTTTTGCTTGGAG+TGG - chr4_4:20837197-20837216 Msa0673940:intron 50.0%
! CTCTTTTGCTTGGAGTGGTG+AGG - chr4_4:20837202-20837221 Msa0673940:intron 50.0%
GCTTGAACCGATGCACTTTC+TGG + chr4_4:20837359-20837378 None:intergenic 50.0%
AGGATATCGTTCTGGCACTC+AGG - chr4_4:20837420-20837439 Msa0673940:intron 50.0%
GGATATCGTTCTGGCACTCA+GGG - chr4_4:20837421-20837440 Msa0673940:intron 50.0%
AGGGAATCGAGGAAGATCCT+CGG - chr4_4:20837447-20837466 Msa0673940:intron 50.0%
CGTTCTTCTGCCTCGGTAAT+CGG - chr4_4:20837480-20837499 Msa0673940:intron 50.0%
GTTCTTCTGCCTCGGTAATC+GGG - chr4_4:20837481-20837500 Msa0673940:intron 50.0%
CATGAAACGTCGGGACTGTT+GGG + chr4_4:20837573-20837592 None:intergenic 50.0%
TCATGAAACGTCGGGACTGT+TGG + chr4_4:20837574-20837593 None:intergenic 50.0%
TCGCTCCGTCCATTGATCTT+TGG + chr4_4:20837780-20837799 None:intergenic 50.0%
AAAGATCAATGGACGGAGCG+AGG - chr4_4:20837779-20837798 Msa0673940:CDS 50.0%
AAGATCAATGGACGGAGCGA+GGG - chr4_4:20837780-20837799 Msa0673940:CDS 50.0%
!! AGGGACTCTGAGATAGCGAT+GGG - chr4_4:20837799-20837818 Msa0673940:CDS 50.0%
CTGGCTGTCTTGCAGCTAAA+TGG + chr4_4:20837840-20837859 None:intergenic 50.0%
AGGAGTCATGAAGCATGCCA+AGG + chr4_4:20837909-20837928 None:intergenic 50.0%
CACTTGCTTCGCTATCCGAT+TGG - chr4_4:20838033-20838052 Msa0673940:intron 50.0%
CCGATTGGAGTTGCTAGTGA+AGG - chr4_4:20838048-20838067 Msa0673940:intron 50.0%
AAGTAGTGAGGATAGGAGGG+AGG + chr4_4:20838149-20838168 None:intergenic 50.0%
AAGTAGGCCCCGTTAGTGGA+CGG - chr4_4:20834470-20834489 Msa0673940:CDS 55.0%
!!! CAGCGCCATGGCGGATATTT+TGG - chr4_4:20835156-20835175 Msa0673940:CDS 55.0%
!! TGTAACAGATGGTGGGGCCA+TGG - chr4_4:20835197-20835216 Msa0673940:CDS 55.0%
! GGTGGGGCCATGGAGTTTTA+AGG - chr4_4:20835207-20835226 Msa0673940:CDS 55.0%
!!! GGGGCCATGGAGTTTTAAGG+TGG - chr4_4:20835210-20835229 Msa0673940:CDS 55.0%
TGGAGAAGGCAAGAGTGGGA+AGG - chr4_4:20835791-20835810 Msa0673940:CDS 55.0%
AGCATATGTGCCTGTCGAGG+AGG - chr4_4:20835948-20835967 Msa0673940:CDS 55.0%
CCATTCAAGACCTCCTCGAC+AGG + chr4_4:20835961-20835980 None:intergenic 55.0%
CCTGTCGAGGAGGTCTTGAA+TGG - chr4_4:20835958-20835977 Msa0673940:CDS 55.0%
CGAGGAGGTCTTGAATGGTG+AGG - chr4_4:20835963-20835982 Msa0673940:CDS 55.0%
ATGTCACGAAAGACCGCAGC+TGG - chr4_4:20836073-20836092 Msa0673940:CDS 55.0%
TGTCACGAAAGACCGCAGCT+GGG - chr4_4:20836074-20836093 Msa0673940:CDS 55.0%
CCTCCTAGAATCCCTCACCA+AGG + chr4_4:20836340-20836359 None:intergenic 55.0%
CCTTGGTGAGGGATTCTAGG+AGG - chr4_4:20836337-20836356 Msa0673940:CDS 55.0%
! GAGGGATTCTAGGAGGCCAA+AGG - chr4_4:20836344-20836363 Msa0673940:CDS 55.0%
! GATTCTAGGAGGCCAAAGGC+TGG - chr4_4:20836348-20836367 Msa0673940:CDS 55.0%
! TTCTAGGAGGCCAAAGGCTG+GGG - chr4_4:20836350-20836369 Msa0673940:CDS 55.0%
GCTGGGGGAGACACAACAAT+TGG - chr4_4:20836366-20836385 Msa0673940:CDS 55.0%
ACCGCCATCATCAGGATTGC+GGG + chr4_4:20836556-20836575 None:intergenic 55.0%
AAGCGATCGGTCCTTCAAGG+CGG + chr4_4:20836854-20836873 None:intergenic 55.0%
CCTTGAAGGACCGATCGCTT+GGG - chr4_4:20836854-20836873 Msa0673940:intron 55.0%
GAGCAACGATGGAGGAAGCA+AGG - chr4_4:20836894-20836913 Msa0673940:intron 55.0%
CAACGATGGAGGAAGCAAGG+TGG - chr4_4:20836897-20836916 Msa0673940:intron 55.0%
ATGGAGGAAGCAAGGTGGGA+AGG - chr4_4:20836902-20836921 Msa0673940:intron 55.0%
GGAAATGTTACCGGGGATGG+AGG + chr4_4:20836969-20836988 None:intergenic 55.0%
TCCGGAAATGTTACCGGGGA+TGG + chr4_4:20836972-20836991 None:intergenic 55.0%
CTGAAGATGCTGCGAGAGCT+GGG - chr4_4:20837066-20837085 Msa0673940:intron 55.0%
GCGAGAGCTGGGCTTATTAG+TGG - chr4_4:20837077-20837096 Msa0673940:intron 55.0%
TGTTGTCCCAATGTGGCCAG+AGG - chr4_4:20837328-20837347 Msa0673940:intron 55.0%
GTTGTCCCAATGTGGCCAGA+GGG - chr4_4:20837329-20837348 Msa0673940:intron 55.0%
! GGGTGTCCCAGAAAGTGCAT+CGG - chr4_4:20837349-20837368 Msa0673940:intron 55.0%
! GGACTGGCAGAGGAGAACAA+TGG - chr4_4:20837385-20837404 Msa0673940:intron 55.0%
GTTCTGGCACTCAGGGCAAA+GGG - chr4_4:20837428-20837447 Msa0673940:intron 55.0%
ACTCAGGGCAAAGGGAATCG+AGG - chr4_4:20837436-20837455 Msa0673940:intron 55.0%
!! GAGGGACTCTGAGATAGCGA+TGG - chr4_4:20837798-20837817 Msa0673940:CDS 55.0%
TCACTTGAGCACGACCTTCC+TGG - chr4_4:20838009-20838028 Msa0673940:intron 55.0%
AGCGAAGCAAGTGTCCAGGA+AGG + chr4_4:20838026-20838045 None:intergenic 55.0%
GGATAGCGAAGCAAGTGTCC+AGG + chr4_4:20838030-20838049 None:intergenic 55.0%
! TTTTCCCCGACACCAAGGCT+CGG - chr4_4:20838100-20838119 Msa0673940:intron 55.0%
!! AGAATCCGAGCCTTGGTGTC+GGG + chr4_4:20838108-20838127 None:intergenic 55.0%
! GAGAATCCGAGCCTTGGTGT+CGG + chr4_4:20838109-20838128 None:intergenic 55.0%
GACACCAAGGCTCGGATTCT+CGG - chr4_4:20838108-20838127 Msa0673940:intron 55.0%
TCAACCCCGCCGTCCACTAA+CGG + chr4_4:20834482-20834501 None:intergenic 60.0%
TGTCTGCCATAGCAGCGCCA+TGG - chr4_4:20835144-20835163 Msa0673940:CDS 60.0%
TATCCGCCATGGCGCTGCTA+TGG + chr4_4:20835153-20835172 None:intergenic 60.0%
!! TTGCAGATGGCGGACCATGG+TGG + chr4_4:20835261-20835280 None:intergenic 60.0%
!! CGATTGCAGATGGCGGACCA+TGG + chr4_4:20835264-20835283 None:intergenic 60.0%
!! TGAGCCTCATCGGTGTTGGG+AGG - chr4_4:20836242-20836261 Msa0673940:CDS 60.0%
TCTAGGAGGCCAAAGGCTGG+GGG - chr4_4:20836351-20836370 Msa0673940:CDS 60.0%
GTTGTGTCTCCCCCAGCCTT+TGG + chr4_4:20836363-20836382 None:intergenic 60.0%
TGCCCCCGCAATCCTGATGA+TGG - chr4_4:20836549-20836568 Msa0673940:CDS 60.0%
CGCCATCATCAGGATTGCGG+GGG + chr4_4:20836554-20836573 None:intergenic 60.0%
CCGCCATCATCAGGATTGCG+GGG + chr4_4:20836555-20836574 None:intergenic 60.0%
!! CCCCGCAATCCTGATGATGG+CGG - chr4_4:20836552-20836571 Msa0673940:CDS 60.0%
CGCTTATCCGACCTTCCACC+AGG + chr4_4:20836654-20836673 None:intergenic 60.0%
GGGGGTCTCGACCTTTGTGA+TGG - chr4_4:20836693-20836712 Msa0673940:CDS 60.0%
AAGGCGGTCCAAGGGAACCT+TGG - chr4_4:20836814-20836833 Msa0673940:intron 60.0%
AGCGATCGGTCCTTCAAGGC+GGG + chr4_4:20836853-20836872 None:intergenic 60.0%
GCCTTGAAGGACCGATCGCT+TGG - chr4_4:20836853-20836872 Msa0673940:intron 60.0%
CCCAAGCGATCGGTCCTTCA+AGG + chr4_4:20836857-20836876 None:intergenic 60.0%
CCAGCTCTCGCAGCATCTTC+AGG + chr4_4:20837068-20837087 None:intergenic 60.0%
CCTGAAGATGCTGCGAGAGC+TGG - chr4_4:20837065-20837084 Msa0673940:intron 60.0%
GGACACCCTCTGGCCACATT+GGG + chr4_4:20837337-20837356 None:intergenic 60.0%
!! GCACTTTCTGGGACACCCTC+TGG + chr4_4:20837347-20837366 None:intergenic 60.0%
CGTTCTGGCACTCAGGGCAA+AGG - chr4_4:20837427-20837446 Msa0673940:intron 60.0%
CCATGGACTTGACCACGTGC+TGG + chr4_4:20837859-20837878 None:intergenic 60.0%
CCAGCACGTGGTCAAGTCCA+TGG - chr4_4:20837856-20837875 Msa0673940:intron 60.0%
GGAGATGTCACACAGCTGCC+TGG - chr4_4:20838069-20838088 Msa0673940:intron 60.0%
!! GAATCCGAGCCTTGGTGTCG+GGG + chr4_4:20838107-20838126 None:intergenic 60.0%
ACCAAGGCTCGGATTCTCGG+CGG - chr4_4:20838111-20838130 Msa0673940:intron 60.0%
! TAGGCCCCGTTAGTGGACGG+CGG - chr4_4:20834473-20834492 Msa0673940:CDS 65.0%
AACCCCGCCGTCCACTAACG+GGG + chr4_4:20834480-20834499 None:intergenic 65.0%
CAACCCCGCCGTCCACTAAC+GGG + chr4_4:20834481-20834500 None:intergenic 65.0%
! AGTGGACGGCGGGGTTGATC+AGG - chr4_4:20834484-20834503 Msa0673940:CDS 65.0%
! GTGGACGGCGGGGTTGATCA+GGG - chr4_4:20834485-20834504 Msa0673940:CDS 65.0%
! ACGGCGGGGTTGATCAGGGT+TGG - chr4_4:20834489-20834508 Msa0673940:CDS 65.0%
CTGCCATAGCAGCGCCATGG+CGG - chr4_4:20835147-20835166 Msa0673940:CDS 65.0%
AAAGACCGCAGCTGGGCTCG+AGG - chr4_4:20836081-20836100 Msa0673940:CDS 65.0%
GAATGCCTCGAGCCCAGCTG+CGG + chr4_4:20836089-20836108 None:intergenic 65.0%
GGGACACCCTCTGGCCACAT+TGG + chr4_4:20837338-20837357 None:intergenic 65.0%
GCTGCAAGACAGCCAGCACG+TGG - chr4_4:20837844-20837863 Msa0673940:exon 65.0%
! AGGCCCCGTTAGTGGACGGC+GGG - chr4_4:20834474-20834493 Msa0673940:CDS 70.0%
GCCGCCGAGAATCCGAGCCT+TGG + chr4_4:20838115-20838134 None:intergenic 70.0%
! GGCCCCGTTAGTGGACGGCG+GGG - chr4_4:20834475-20834494 Msa0673940:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 20834097 20838389 20834097 ID=Msa0673940;Name=Msa0673940
chr4_4 mRNA 20834097 20838389 20834097 ID=Msa0673940-mRNA-1;Parent=Msa0673940;Name=Msa0673940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=162|1|0.75|1|0.66|0.5|4|219|808
chr4_4 exon 20834097 20834749 20834097 ID=Msa0673940-mRNA-1:exon:5946;Parent=Msa0673940-mRNA-1
chr4_4 exon 20834866 20836765 20834866 ID=Msa0673940-mRNA-1:exon:5945;Parent=Msa0673940-mRNA-1
chr4_4 exon 20837769 20837868 20837769 ID=Msa0673940-mRNA-1:exon:5944;Parent=Msa0673940-mRNA-1
chr4_4 exon 20838235 20838389 20838235 ID=Msa0673940-mRNA-1:exon:5943;Parent=Msa0673940-mRNA-1
chr4_4 five_prime_UTR 20838235 20838389 20838235 ID=Msa0673940-mRNA-1:five_prime_utr;Parent=Msa0673940-mRNA-1
chr4_4 five_prime_UTR 20837862 20837868 20837862 ID=Msa0673940-mRNA-1:five_prime_utr;Parent=Msa0673940-mRNA-1
chr4_4 CDS 20837769 20837861 20837769 ID=Msa0673940-mRNA-1:cds;Parent=Msa0673940-mRNA-1
chr4_4 CDS 20834866 20836765 20834866 ID=Msa0673940-mRNA-1:cds;Parent=Msa0673940-mRNA-1
chr4_4 CDS 20834316 20834749 20834316 ID=Msa0673940-mRNA-1:cds;Parent=Msa0673940-mRNA-1
chr4_4 three_prime_UTR 20834097 20834315 20834097 ID=Msa0673940-mRNA-1:three_prime_utr;Parent=Msa0673940-mRNA-1
Gene Sequence

>Msa0673940

ATGGCACAAATTCATCTTCATGGTACTCTTCATGCTACTATCTATGAGGTTGATAAGCTTAATGCTGGTGGTGGTGGAAATTTCCTCAGCATGATCAGGCAAAACATTGAGGAAACTGTTGGTCTTGGAAAGGGAGTTACTAAACTCTATGCTACCATTGATTTGGAGAAGGCAAGAGTGGGAAGGACAAGAATTATTGAAAATGAGCATACTAATCCCAAATGGTATGAGTCTTTTCACATTTACTGTGCTCATATGGCTTCAGATATCATATTCACTGTGAAAGATGATAATCCTGTTGGAGCAACTTTAATCGGAAGAGCATATGTGCCTGTCGAGGAGGTCTTGAATGGTGAGGAAATTGATAGGTGGGTGGAAATTTTGGACACTGAAAAAAACCCGATACAAGAGGGTTCGAAGATCCATGTGAAGCTGCAATATTTTGATGTCACGAAAGACCGCAGCTGGGCTCGAGGCATTCAAAGCGCTAAATTTCCTGGAGTTCCGTATACTTTCTTCTCACAGAGGAAAGGATGTAAGGTATCTCTTTACCAAGATTCTCATGTGCCGGATAATTTCATCCCTAAAATACCACTTTCTGGTGGCAAGACTTATGAGCCTCATCGGTGTTGGGAGGATATTTATGATGCCATCACCAATGCAAAACACATGATATACATTACCGGTTGGTCTGTTTATACCGAAATTTCCTTGGTGAGGGATTCTAGGAGGCCAAAGGCTGGGGGAGACACAACAATTGGTGAGCTTCTAAAGAAAAAGTCTAGTGAAGGTGTTAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCGGTTGGTTTGTTGAAAAAGGATGGATTGATGGCTACTCATGACGAAGAAACCGCACAGTTCTTTGAAGGTACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGATGATGGCGGTAGCATCATTCAGGATTTACAAGTTTCCACCATGTTTACTCATCACCAGAAGATTGTGGTTGTGGACAGTGAATTACCTGGTGGAAGGTCGGATAAGCGAAGAATTGTGAGTTTTGTTGGGGGTCTCGACCTTTGTGATGGAAGATATGATACTCCATTCCACTCACTTTTTAGAACTCTTGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCAGGTGCTGCAATCACAAAAGGCGGTCCAAGGGAACCTTGGCATGACATTCATTCCCGCCTTGAAGGACCGATCGCTTGGGATGTGTTGTTTAACTTTGAGCAACGATGGAGGAAGCAAGGTGGGAAGGATTTACTTGTCTCTCTAAGGGAACTTGAAGATTCTATTATTCCTCCATCCCCGGTAACATTTCCGGATGATCACGAGACATGGAATGTTCAGCTGTTTAGATCTATTGATGGTGGGGCTGCTTTTGGGTTCCCAGAAACTCCTGAAGATGCTGCGAGAGCTGGGCTTATTAGTGGAAAGGATAATATCATCGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGGCGTGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCTTGGAGTGGTGAGGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTCATCCCAAAGGAACTTTCACTTAAGATTATGAGTAAGATTGAAGCCGGGGAAAAGTTCACTGTGTACGTTGTTGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCGGTTCAAGCAATATTGGACTGGCAGAGGAGAACAATGGAGATGATGTACAAGGATATCGTTCTGGCACTCAGGGCAAAGGGAATCGAGGAAGATCCTCGGAATTATTTGACGTTCTTCTGCCTCGGTAATCGGGAAGTAAAGAAACAAGGAGAGTACGAGCCTTCTGAACAACCAGAACCTGATTCAGATTACGAGAGAGCCCAACAGTCCCGACGTTTCATGATCTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCGTTGGATCTGCCAACATCAACCAAAGATCAATGGACGGAGCGAGGGACTCTGAGATAGCGATGGGAGCCTATCAGCCCTACCATTTAGCTGCAAGACAGCCAGCACGTGGTCAAGTCCATGGTTTTCGCATGGCATTATGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTTCATCCAGAAAATCAAGAATGTATCCGTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTCTATTCAAATGATTCACTTGAGCACGACCTTCCTGGACACTTGCTTCGCTATCCGATTGGAGTTGCTAGTGAAGGAGATGTCACACAGCTGCCTGGATTTGAATTTTTCCCCGACACCAAGGCTCGGATTCTCGGCGGCAAAGCTGATTACCTCCCTCCTATCCTCACTACTTAG
Protein sequence

>Msa0673940

MAQIHLHGTLHATIYEVDKLNAGGGGNFLSMIRQNIEETVGLGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWYESFHIYCAHMASDIIFTVKDDNPVGATLIGRAYVPVEEVLNGEEIDRWVEILDTEKNPIQEGSKIHVKLQYFDVTKDRSWARGIQSAKFPGVPYTFFSQRKGCKVSLYQDSHVPDNFIPKIPLSGGKTYEPHRCWEDIYDAITNAKHMIYITGWSVYTEISLVRDSRRPKAGGDTTIGELLKKKSSEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTDVHCVLCPRNPDDGGSIIQDLQVSTMFTHHQKIVVVDSELPGGRSDKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDSIIPPSPVTFPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSGEDIKPEDIGALHLIPKELSLKIMSKIEAGEKFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIVLALRAKGIEEDPRNYLTFFCLGNREVKKQGEYEPSEQPEPDSDYERAQQSRRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLAARQPARGQVHGFRMALWYEHLGMLHDSFLHPENQECIRKVNQIADKYWDLYSNDSLEHDLPGHLLRYPIGVASEGDVTQLPGFEFFPDTKARILGGKADYLPPILTT*