Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024340 | XP_019433617.1 | 100.000 | 128 | 0 | 0 | 1 | 128 | 6 | 133 | 7.74e-89 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024340 | sp|P49636|RL40_NICSY | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.93e-90 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024340 | A0A022R0F0 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 5.29e-89 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024340 | Msa0163420 | 0.992174 | 9.915378e-192 | -8.615850e-47 |
| Msa0024340 | Msa0220720 | 0.813956 | 1.968196e-51 | -8.615850e-47 |
| Msa0024340 | Msa0299870 | 0.807122 | 5.897452e-50 | -8.615850e-47 |
| Msa0024340 | Msa0339250 | 0.818399 | 2.000261e-52 | -8.615850e-47 |
| Msa0024340 | Msa0395820 | 0.819877 | 9.219609e-53 | -8.615850e-47 |
| Msa0024340 | Msa1006840 | 0.814455 | 1.527698e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024340 | MtrunA17_Chr7g0266661 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 1.02e-92 | 263 |
| Msa0024340 | MtrunA17_Chr1g0178381 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 1.02e-92 | 263 |
| Msa0024340 | MtrunA17_Chr3g0127481 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 1.02e-92 | 263 |
| Msa0024340 | MtrunA17_Chr6g0475951 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 7.56e-51 | 155 |
| Msa0024340 | MtrunA17_Chr4g0037241 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 7.41e-50 | 155 |
| Msa0024340 | MtrunA17_Chr4g0037241 | 62.162 | 74 | 28 | 0 | 3 | 76 | 79 | 152 | 1.45e-26 | 96.7 |
| Msa0024340 | MtrunA17_Chr5g0444101 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 7.41e-50 | 155 |
| Msa0024340 | MtrunA17_Chr5g0444101 | 62.162 | 74 | 28 | 0 | 3 | 76 | 79 | 152 | 1.45e-26 | 96.7 |
| Msa0024340 | MtrunA17_Chr6g0475961 | 98.701 | 77 | 1 | 0 | 1 | 77 | 4 | 80 | 8.42e-50 | 157 |
| Msa0024340 | MtrunA17_Chr6g0475961 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 8.42e-50 | 157 |
| Msa0024340 | MtrunA17_Chr6g0475961 | 100.000 | 37 | 0 | 0 | 1 | 37 | 156 | 192 | 5.25e-18 | 75.9 |
| Msa0024340 | MtrunA17_Chr8g0380181 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.14e-49 | 155 |
| Msa0024340 | MtrunA17_Chr5g0413361 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.22e-49 | 155 |
| Msa0024340 | MtrunA17_Chr7g0274921 | 98.701 | 77 | 1 | 0 | 1 | 77 | 3 | 79 | 2.98e-49 | 157 |
| Msa0024340 | MtrunA17_Chr7g0274921 | 98.701 | 77 | 1 | 0 | 1 | 77 | 79 | 155 | 2.98e-49 | 157 |
| Msa0024340 | MtrunA17_Chr7g0274921 | 98.701 | 77 | 1 | 0 | 1 | 77 | 155 | 231 | 4.05e-49 | 156 |
| Msa0024340 | MtrunA17_Chr1g0181441 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 4.38e-49 | 156 |
| Msa0024340 | MtrunA17_Chr1g0181441 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 4.38e-49 | 156 |
| Msa0024340 | MtrunA17_Chr1g0181441 | 100.000 | 76 | 0 | 0 | 1 | 76 | 153 | 228 | 6.69e-49 | 156 |
| Msa0024340 | MtrunA17_Chr4g0041751 | 97.403 | 77 | 2 | 0 | 1 | 77 | 77 | 153 | 1.10e-48 | 155 |
| Msa0024340 | MtrunA17_Chr4g0041751 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 2.02e-48 | 154 |
| Msa0024340 | MtrunA17_Chr4g0041751 | 69.737 | 76 | 23 | 0 | 1 | 76 | 153 | 228 | 4.53e-30 | 107 |
| Msa0024340 | MtrunA17_Chr8g0377821 | 98.701 | 77 | 1 | 0 | 1 | 77 | 9 | 85 | 2.18e-47 | 156 |
| Msa0024340 | MtrunA17_Chr8g0377821 | 98.701 | 77 | 1 | 0 | 1 | 77 | 85 | 161 | 2.18e-47 | 156 |
| Msa0024340 | MtrunA17_Chr8g0377821 | 98.701 | 77 | 1 | 0 | 1 | 77 | 161 | 237 | 2.18e-47 | 156 |
| Msa0024340 | MtrunA17_Chr8g0377821 | 98.701 | 77 | 1 | 0 | 1 | 77 | 237 | 313 | 2.18e-47 | 156 |
| Msa0024340 | MtrunA17_Chr8g0377821 | 100.000 | 76 | 0 | 0 | 1 | 76 | 313 | 388 | 3.31e-47 | 156 |
| Msa0024340 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 4 | 80 | 6.56e-47 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 6.56e-47 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 156 | 232 | 6.56e-47 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 232 | 308 | 6.56e-47 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 308 | 384 | 6.56e-47 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 384 | 460 | 8.81e-47 | 156 |
| Msa0024340 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 5 | 81 | 7.41e-47 | 156 |
| Msa0024340 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 81 | 157 | 7.41e-47 | 156 |
| Msa0024340 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 157 | 233 | 7.41e-47 | 156 |
| Msa0024340 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 233 | 309 | 7.41e-47 | 156 |
| Msa0024340 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 309 | 385 | 7.41e-47 | 156 |
| Msa0024340 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 385 | 461 | 9.86e-47 | 156 |
| Msa0024340 | MtrunA17_Chr8g0374171 | 96.104 | 77 | 3 | 0 | 1 | 77 | 74 | 150 | 1.51e-46 | 148 |
| Msa0024340 | MtrunA17_Chr8g0374171 | 91.429 | 35 | 3 | 0 | 43 | 77 | 40 | 74 | 2.72e-15 | 68.2 |
| Msa0024340 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 1.93e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 1.93e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 1.93e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 1.93e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 1.93e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 381 | 457 | 1.93e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0041701 | 100.000 | 76 | 0 | 0 | 1 | 76 | 457 | 532 | 2.86e-46 | 156 |
| Msa0024340 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 4 | 80 | 2.01e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 2.01e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 156 | 232 | 2.01e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 232 | 308 | 2.01e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 384 | 460 | 2.01e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 460 | 536 | 2.69e-46 | 156 |
| Msa0024340 | MtrunA17_Chr4g0048591 | 96.104 | 77 | 3 | 0 | 1 | 77 | 308 | 384 | 7.64e-45 | 152 |
| Msa0024340 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 4 | 80 | 2.03e-46 | 157 |
| Msa0024340 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 2.03e-46 | 157 |
| Msa0024340 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 156 | 232 | 2.03e-46 | 157 |
| Msa0024340 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 232 | 308 | 2.03e-46 | 157 |
| Msa0024340 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 308 | 384 | 2.03e-46 | 157 |
| Msa0024340 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 384 | 460 | 2.03e-46 | 157 |
| Msa0024340 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 460 | 536 | 2.75e-46 | 156 |
| Msa0024340 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 3.74e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 156 | 232 | 3.74e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 232 | 308 | 3.74e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 368 | 444 | 3.74e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 444 | 520 | 3.74e-46 | 157 |
| Msa0024340 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 520 | 596 | 4.99e-46 | 156 |
| Msa0024340 | MtrunA17_Chr4g0046831 | 97.403 | 77 | 2 | 0 | 1 | 77 | 4 | 80 | 1.00e-44 | 153 |
| Msa0024340 | MtrunA17_Chr4g0046831 | 77.922 | 77 | 1 | 1 | 1 | 77 | 308 | 368 | 2.06e-30 | 114 |
| Msa0024340 | MtrunA17_Chr1g0169371 | 71.053 | 76 | 22 | 0 | 1 | 76 | 215 | 290 | 1.24e-28 | 105 |
| Msa0024340 | MtrunA17_Chr5g0433721 | 68.831 | 77 | 23 | 1 | 1 | 76 | 194 | 270 | 8.58e-28 | 103 |
| Msa0024340 | MtrunA17_Chr5g0433631 | 69.863 | 73 | 22 | 0 | 1 | 73 | 266 | 338 | 6.78e-27 | 102 |
| Msa0024340 | MtrunA17_Chr5g0428191 | 68.421 | 76 | 24 | 0 | 1 | 76 | 241 | 316 | 1.37e-25 | 98.2 |
| Msa0024340 | MtrunA17_Chr5g0424981 | 60.000 | 75 | 30 | 0 | 1 | 75 | 2 | 76 | 3.91e-25 | 90.9 |
| Msa0024340 | MtrunA17_Chr8g0374161 | 100.000 | 44 | 0 | 0 | 1 | 44 | 9 | 52 | 6.52e-25 | 89.7 |
| Msa0024340 | MtrunA17_Chr2g0298951 | 61.333 | 75 | 29 | 0 | 1 | 75 | 236 | 310 | 2.58e-23 | 92.0 |
| Msa0024340 | MtrunA17_Chr5g0433411 | 64.384 | 73 | 26 | 0 | 1 | 73 | 267 | 339 | 3.02e-23 | 92.4 |
| Msa0024340 | MtrunA17_Chr5g0433521 | 61.333 | 75 | 29 | 0 | 1 | 75 | 240 | 314 | 6.32e-23 | 90.9 |
| Msa0024340 | MtrunA17_Chr5g0433661 | 65.333 | 75 | 26 | 0 | 1 | 75 | 278 | 352 | 7.21e-23 | 91.3 |
| Msa0024340 | MtrunA17_Chr5g0433681 | 59.211 | 76 | 30 | 1 | 1 | 75 | 1 | 76 | 7.73e-23 | 85.1 |
| Msa0024340 | MtrunA17_Chr7g0259431 | 58.667 | 75 | 31 | 0 | 1 | 75 | 223 | 297 | 7.85e-22 | 87.8 |
| Msa0024340 | MtrunA17_Chr2g0298941 | 60.000 | 75 | 30 | 0 | 1 | 75 | 177 | 251 | 8.46e-22 | 87.0 |
| Msa0024340 | MtrunA17_Chr1g0169401 | 60.000 | 70 | 28 | 0 | 7 | 76 | 2 | 71 | 3.12e-21 | 80.9 |
| Msa0024340 | MtrunA17_Chr4g0003111 | 53.333 | 75 | 35 | 0 | 1 | 75 | 4 | 78 | 7.83e-21 | 80.1 |
| Msa0024340 | MtrunA17_Chr5g0433531 | 57.333 | 75 | 31 | 1 | 1 | 74 | 244 | 318 | 2.69e-19 | 81.3 |
| Msa0024340 | MtrunA17_Chr5g0433701 | 58.824 | 68 | 27 | 1 | 1 | 67 | 1 | 68 | 7.43e-19 | 75.5 |
| Msa0024340 | MtrunA17_Chr7g0223111 | 60.526 | 76 | 29 | 1 | 1 | 75 | 267 | 342 | 9.10e-19 | 80.1 |
| Msa0024340 | MtrunA17_Chr5g0424971 | 53.333 | 75 | 35 | 0 | 1 | 75 | 252 | 326 | 5.45e-18 | 77.8 |
| Msa0024340 | MtrunA17_Chr5g0433391 | 48.684 | 76 | 38 | 1 | 1 | 75 | 8 | 83 | 9.08e-16 | 67.4 |
| Msa0024340 | MtrunA17_Chr5g0433711 | 58.333 | 60 | 25 | 0 | 15 | 74 | 4 | 63 | 4.43e-15 | 65.1 |
| Msa0024340 | MtrunA17_Chr5g0433381 | 50.649 | 77 | 36 | 2 | 1 | 75 | 9 | 85 | 9.67e-15 | 64.7 |
| Msa0024340 | MtrunA17_Chr4g0041621 | 76.471 | 34 | 8 | 0 | 44 | 77 | 11 | 44 | 5.10e-12 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024340 | AT2G36170.1 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 4.98e-91 | 259 |
| Msa0024340 | AT3G52590.1 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 4.98e-91 | 259 |
| Msa0024340 | AT4G05320.7 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.79e-50 | 156 |
| Msa0024340 | AT4G05320.7 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 7.61e-50 | 156 |
| Msa0024340 | AT4G05050.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.79e-50 | 156 |
| Msa0024340 | AT4G05050.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 7.61e-50 | 156 |
| Msa0024340 | AT2G35635.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.02e-49 | 155 |
| Msa0024340 | AT2G35635.1 | 60.526 | 76 | 30 | 0 | 3 | 78 | 79 | 154 | 2.08e-26 | 96.7 |
| Msa0024340 | AT2G47110.2 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.54e-49 | 155 |
| Msa0024340 | AT2G47110.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.54e-49 | 155 |
| Msa0024340 | AT1G31340.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.58e-49 | 155 |
| Msa0024340 | AT1G31340.1 | 62.667 | 75 | 28 | 0 | 3 | 77 | 79 | 153 | 5.35e-27 | 98.6 |
| Msa0024340 | AT3G62250.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.77e-49 | 155 |
| Msa0024340 | AT1G23410.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.78e-49 | 155 |
| Msa0024340 | AT4G02890.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0024340 | AT4G02890.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0024340 | AT4G02890.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0024340 | AT4G02890.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0024340 | AT4G02890.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0024340 | AT4G02890.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0024340 | AT4G05050.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0024340 | AT4G05050.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0024340 | AT4G05050.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0024340 | AT4G05050.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0024340 | AT4G05050.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0024340 | AT4G05050.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0024340 | AT4G05050.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0024340 | AT4G05050.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0024340 | AT4G05050.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0024340 | AT1G55060.1 | 97.403 | 77 | 2 | 0 | 1 | 77 | 77 | 153 | 1.98e-48 | 155 |
| Msa0024340 | AT1G55060.1 | 97.368 | 76 | 2 | 0 | 1 | 76 | 153 | 228 | 2.56e-46 | 149 |
| Msa0024340 | AT1G55060.1 | 85.714 | 77 | 11 | 0 | 1 | 77 | 1 | 77 | 2.39e-42 | 139 |
| Msa0024340 | AT4G05320.5 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.48e-48 | 157 |
| Msa0024340 | AT4G05320.5 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.48e-48 | 157 |
| Msa0024340 | AT4G05320.5 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.48e-48 | 157 |
| Msa0024340 | AT4G05320.5 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 4.65e-48 | 156 |
| Msa0024340 | AT4G05320.8 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.48e-48 | 157 |
| Msa0024340 | AT4G05320.8 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.48e-48 | 157 |
| Msa0024340 | AT4G05320.8 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.48e-48 | 157 |
| Msa0024340 | AT4G05320.8 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 4.65e-48 | 156 |
| Msa0024340 | AT4G02890.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.48e-48 | 157 |
| Msa0024340 | AT4G02890.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.48e-48 | 157 |
| Msa0024340 | AT4G02890.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.48e-48 | 157 |
| Msa0024340 | AT4G02890.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 4.65e-48 | 156 |
| Msa0024340 | AT4G02890.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.48e-48 | 157 |
| Msa0024340 | AT4G02890.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.48e-48 | 157 |
| Msa0024340 | AT4G02890.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.48e-48 | 157 |
| Msa0024340 | AT4G02890.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 4.65e-48 | 156 |
| Msa0024340 | AT5G03240.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.3 | 100.000 | 76 | 0 | 0 | 1 | 76 | 229 | 304 | 5.49e-48 | 156 |
| Msa0024340 | AT5G03240.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.2 | 100.000 | 76 | 0 | 0 | 1 | 76 | 229 | 304 | 5.49e-48 | 156 |
| Msa0024340 | AT5G03240.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.64e-48 | 156 |
| Msa0024340 | AT5G03240.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 229 | 304 | 5.49e-48 | 156 |
| Msa0024340 | AT5G20620.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.64e-48 | 156 |
| Msa0024340 | AT5G20620.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.64e-48 | 156 |
| Msa0024340 | AT5G20620.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.64e-48 | 156 |
| Msa0024340 | AT5G20620.2 | 100.000 | 76 | 0 | 0 | 1 | 76 | 229 | 304 | 5.49e-48 | 156 |
| Msa0024340 | AT1G65350.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 6.38e-48 | 156 |
| Msa0024340 | AT1G65350.1 | 97.403 | 77 | 2 | 0 | 1 | 77 | 152 | 228 | 9.64e-47 | 153 |
| Msa0024340 | AT1G65350.1 | 97.403 | 77 | 1 | 1 | 1 | 77 | 77 | 152 | 7.14e-45 | 148 |
| Msa0024340 | AT1G65350.1 | 80.000 | 90 | 4 | 1 | 1 | 76 | 228 | 317 | 6.29e-39 | 133 |
| Msa0024340 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 2.68e-47 | 156 |
| Msa0024340 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 2.68e-47 | 156 |
| Msa0024340 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 1.99e-47 | 157 |
| Msa0024340 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 2.68e-47 | 156 |
| Msa0024340 | AT5G20620.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 2.05e-47 | 157 |
| Msa0024340 | AT5G20620.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 2.05e-47 | 157 |
| Msa0024340 | AT5G20620.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 2.05e-47 | 157 |
| Msa0024340 | AT5G20620.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 2.05e-47 | 157 |
| Msa0024340 | AT5G20620.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 305 | 380 | 3.08e-47 | 156 |
| Msa0024340 | AT5G37640.1 | 96.104 | 77 | 3 | 0 | 1 | 77 | 79 | 155 | 4.82e-47 | 154 |
| Msa0024340 | AT5G37640.1 | 92.208 | 77 | 6 | 0 | 1 | 77 | 155 | 231 | 7.21e-43 | 143 |
| Msa0024340 | AT5G37640.1 | 92.208 | 77 | 5 | 1 | 1 | 76 | 231 | 307 | 8.70e-41 | 138 |
| Msa0024340 | AT5G37640.1 | 77.922 | 77 | 17 | 0 | 1 | 77 | 3 | 79 | 5.19e-34 | 120 |
| Msa0024340 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 381 | 457 | 1.12e-46 | 156 |
| Msa0024340 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 8.32e-47 | 157 |
| Msa0024340 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 381 | 457 | 1.12e-46 | 156 |
| Msa0024340 | AT3G09790.2 | 92.208 | 77 | 6 | 0 | 1 | 77 | 79 | 155 | 3.53e-40 | 141 |
| Msa0024340 | AT3G09790.2 | 84.416 | 77 | 12 | 0 | 1 | 77 | 3 | 79 | 9.50e-37 | 132 |
| Msa0024340 | AT3G09790.2 | 79.730 | 74 | 15 | 0 | 1 | 74 | 552 | 625 | 2.29e-31 | 117 |
| Msa0024340 | AT3G09790.2 | 70.130 | 77 | 23 | 0 | 1 | 77 | 393 | 469 | 1.38e-28 | 109 |
| Msa0024340 | AT3G09790.2 | 73.684 | 76 | 18 | 1 | 1 | 74 | 319 | 394 | 3.40e-27 | 105 |
| Msa0024340 | AT3G09790.2 | 69.512 | 82 | 20 | 1 | 1 | 77 | 238 | 319 | 7.55e-27 | 104 |
| Msa0024340 | AT3G09790.2 | 67.073 | 82 | 20 | 2 | 1 | 75 | 155 | 236 | 3.77e-26 | 102 |
| Msa0024340 | AT3G09790.2 | 65.476 | 84 | 22 | 1 | 1 | 77 | 469 | 552 | 2.67e-25 | 100 |
| Msa0024340 | AT3G09790.1 | 92.208 | 77 | 6 | 0 | 1 | 77 | 79 | 155 | 3.53e-40 | 141 |
| Msa0024340 | AT3G09790.1 | 84.416 | 77 | 12 | 0 | 1 | 77 | 3 | 79 | 9.50e-37 | 132 |
| Msa0024340 | AT3G09790.1 | 79.730 | 74 | 15 | 0 | 1 | 74 | 552 | 625 | 2.29e-31 | 117 |
| Msa0024340 | AT3G09790.1 | 70.130 | 77 | 23 | 0 | 1 | 77 | 393 | 469 | 1.38e-28 | 109 |
| Msa0024340 | AT3G09790.1 | 73.684 | 76 | 18 | 1 | 1 | 74 | 319 | 394 | 3.40e-27 | 105 |
| Msa0024340 | AT3G09790.1 | 69.512 | 82 | 20 | 1 | 1 | 77 | 238 | 319 | 7.55e-27 | 104 |
| Msa0024340 | AT3G09790.1 | 67.073 | 82 | 20 | 2 | 1 | 75 | 155 | 236 | 3.77e-26 | 102 |
| Msa0024340 | AT3G09790.1 | 65.476 | 84 | 22 | 1 | 1 | 77 | 469 | 552 | 2.67e-25 | 100 |
| Msa0024340 | AT1G53930.1 | 75.342 | 73 | 18 | 0 | 1 | 73 | 86 | 158 | 6.64e-33 | 113 |
| Msa0024340 | AT1G53950.1 | 61.972 | 71 | 27 | 0 | 1 | 71 | 69 | 139 | 2.82e-25 | 93.6 |
| Msa0024340 | AT1G11980.1 | 55.263 | 76 | 34 | 0 | 1 | 76 | 1 | 76 | 2.91e-24 | 89.0 |
| Msa0024340 | AT1G53945.1 | 46.269 | 67 | 36 | 0 | 1 | 67 | 46 | 112 | 7.62e-13 | 61.2 |
| Msa0024340 | AT4G12570.1 | 38.667 | 75 | 45 | 1 | 1 | 74 | 95 | 169 | 4.34e-12 | 62.4 |
| Msa0024340 | AT5G42220.2 | 38.889 | 72 | 44 | 0 | 1 | 72 | 24 | 95 | 6.28e-12 | 61.6 |
| Msa0024340 | AT5G42220.1 | 38.889 | 72 | 44 | 0 | 1 | 72 | 24 | 95 | 6.28e-12 | 61.6 |
Find 43 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATAATAAATATTTAT+AGG | 0.223990 | 1_1:-46783488 | None:intergenic |
| ACCTTCTTTGTCTTGAATCT+TGG | 0.270573 | 1_1:-46782180 | None:intergenic |
| ATCTACTTAATCTTCTTCTT+TGG | 0.272953 | 1_1:-46783189 | None:intergenic |
| CGAGCCTTCTTTGATGGCTT+TGG | 0.276267 | 1_1:+46782490 | Msa0024340:CDS |
| GAGTAATCGTCTTCCCTGTT+AGG | 0.315119 | 1_1:-46782118 | None:intergenic |
| GAAGAAGATTAAGTAGATTA+TGG | 0.322685 | 1_1:+46783194 | Msa0024340:exon |
| TATTATCGAGCCTTCTTTGA+TGG | 0.326217 | 1_1:+46782484 | Msa0024340:CDS |
| ATGACTCATAGCAACAATTT+CGG | 0.375143 | 1_1:+46783408 | Msa0024340:three_prime_UTR |
| AAAATCAAACGCTGCTGATC+TGG | 0.375600 | 1_1:-46782279 | None:intergenic |
| TTCCTGCAGTTCACAGCCCT+TGG | 0.384485 | 1_1:-46783027 | None:intergenic |
| CTACATTGCATCTTGTGCTT+AGG | 0.389612 | 1_1:+46782450 | Msa0024340:CDS |
| AGAATTGAAACTTTATATGC+TGG | 0.399950 | 1_1:-46782007 | None:intergenic |
| AGTAATCGTCTTCCCTGTTA+GGG | 0.439791 | 1_1:-46782117 | None:intergenic |
| CTACGGTTTGATAAAATTTG+AGG | 0.444323 | 1_1:-46781977 | None:intergenic |
| GAAGTGTGGTCACAGTAATC+AGG | 0.450078 | 1_1:+46783053 | Msa0024340:CDS |
| TGATGTTGTTGTTCTCGTGT+GGG | 0.450921 | 1_1:+46783220 | Msa0024340:three_prime_UTR |
| GAATTGAAACTTTATATGCT+GGG | 0.455808 | 1_1:-46782006 | None:intergenic |
| CATCTTGTGCTTAGGCTTCG+TGG | 0.456490 | 1_1:+46782458 | Msa0024340:CDS |
| CAACTGTATTAATCAACAAT+TGG | 0.458901 | 1_1:-46783258 | None:intergenic |
| TTTGAATGTTGTAATCAGCT+AGG | 0.460200 | 1_1:-46782332 | None:intergenic |
| CTGATGTTGTTGTTCTCGTG+TGG | 0.465175 | 1_1:+46783219 | Msa0024340:three_prime_UTR |
| TCTCGTGTGGGGTGGTGAGC+TGG | 0.468134 | 1_1:+46783232 | Msa0024340:three_prime_UTR |
| AGCTGATTACAACATTCAAA+AGG | 0.468739 | 1_1:+46782335 | Msa0024340:CDS |
| ATCCAAGGGCTGTGAACTGC+AGG | 0.470105 | 1_1:+46783025 | Msa0024340:CDS |
| TGAGATCATGTGTTTAGTAT+TGG | 0.479006 | 1_1:+46783279 | Msa0024340:three_prime_UTR |
| GCTGGAAAACAGCTTGAAGA+TGG | 0.489439 | 1_1:+46782303 | Msa0024340:CDS |
| ATCAAACGCTGCTGATCTGG+TGG | 0.490239 | 1_1:-46782276 | None:intergenic |
| GCTATGCTCGTCTGCATCCA+AGG | 0.492282 | 1_1:+46783010 | Msa0024340:CDS |
| GAATTGCGAAACGTGAAGAA+AGG | 0.492884 | 1_1:-46782036 | None:intergenic |
| TTGAATGTTGTAATCAGCTA+GGG | 0.502461 | 1_1:-46782331 | None:intergenic |
| CTTCTTTGATGGCTTTGGCT+AGG | 0.506162 | 1_1:+46782495 | Msa0024340:CDS |
| AATTGCGAAACGTGAAGAAA+GGG | 0.507534 | 1_1:-46782035 | None:intergenic |
| CTAGCCAAAGCCATCAAAGA+AGG | 0.530966 | 1_1:-46782494 | None:intergenic |
| CTTGGCTTTGACATTGTCGA+TGG | 0.532900 | 1_1:-46782162 | None:intergenic |
| GCTGATTACAACATTCAAAA+GGG | 0.540486 | 1_1:+46782336 | Msa0024340:CDS |
| AGGAACATACTTGCGGCAGA+TGG | 0.561328 | 1_1:-46782537 | None:intergenic |
| GCCAAGATTCAAGACAAAGA+AGG | 0.569347 | 1_1:+46782179 | Msa0024340:CDS |
| CTATGCTCGTCTGCATCCAA+GGG | 0.587050 | 1_1:+46783011 | Msa0024340:CDS |
| GATGTTGTTGTTCTCGTGTG+GGG | 0.620497 | 1_1:+46783221 | Msa0024340:three_prime_UTR |
| GTTGTTGTTCTCGTGTGGGG+TGG | 0.633785 | 1_1:+46783224 | Msa0024340:three_prime_UTR |
| TCAAACGCTGCTGATCTGGT+GGG | 0.641805 | 1_1:-46782275 | None:intergenic |
| ATTGCGAAACGTGAAGAAAG+GGG | 0.650790 | 1_1:-46782034 | None:intergenic |
| CTTGTGCTTAGGCTTCGTGG+TGG | 0.730767 | 1_1:+46782461 | Msa0024340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAAATATTTAT+AGG | - | chr1_1:46783491-46783510 | None:intergenic | 0.0% |
| !! | TAATAATAATAAATATTTAT+AGG | - | chr1_1:46783491-46783510 | None:intergenic | 0.0% |
| !!! | TTTTTTTTCAACTGAAAAAT+TGG | - | chr1_1:46782061-46782080 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAAAAAGGTGA+AGG | - | chr1_1:46782569-46782588 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTTGCTTAATTC+AGG | + | chr1_1:46782583-46782602 | Msa0024340:intron | 15.0% |
| !!! | TTTTTTTTCAACTGAAAAAT+TGG | - | chr1_1:46782061-46782080 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAAAAAGGTGA+AGG | - | chr1_1:46782569-46782588 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTTGCTTAATTC+AGG | + | chr1_1:46782583-46782602 | Msa0024340:intron | 15.0% |
| !! | ATAAAAAATGCAAAATGATG+AGG | - | chr1_1:46782378-46782397 | None:intergenic | 20.0% |
| !! | TCTTAAATTATTATCTGTGT+TGG | - | chr1_1:46782745-46782764 | None:intergenic | 20.0% |
| !!! | GTGTAAAAACTATTTTACAT+TGG | + | chr1_1:46782947-46782966 | Msa0024340:intron | 20.0% |
| !! | ATAAAAAATGCAAAATGATG+AGG | - | chr1_1:46782378-46782397 | None:intergenic | 20.0% |
| !! | TCTTAAATTATTATCTGTGT+TGG | - | chr1_1:46782745-46782764 | None:intergenic | 20.0% |
| !!! | GTGTAAAAACTATTTTACAT+TGG | + | chr1_1:46782947-46782966 | Msa0024340:intron | 20.0% |
| ! | GAATTGAAACTTTATATGCT+GGG | - | chr1_1:46782009-46782028 | None:intergenic | 25.0% |
| ! | AGAATTGAAACTTTATATGC+TGG | - | chr1_1:46782010-46782029 | None:intergenic | 25.0% |
| !!! | CTTGAACACGTTTAATTTTT+AGG | + | chr1_1:46782626-46782645 | Msa0024340:intron | 25.0% |
| !!! | CGTTTAATTTTTAGGATTCA+TGG | + | chr1_1:46782634-46782653 | Msa0024340:intron | 25.0% |
| !! | ACATCACTACATTTTTACAT+TGG | + | chr1_1:46782868-46782887 | Msa0024340:intron | 25.0% |
| !! | ACATTGGCATTTAAGATTAA+TGG | + | chr1_1:46782884-46782903 | Msa0024340:intron | 25.0% |
| ! | TATAACATGTTGAAAGTTAG+AGG | + | chr1_1:46782907-46782926 | Msa0024340:intron | 25.0% |
| ! | ATAACATGTTGAAAGTTAGA+GGG | + | chr1_1:46782908-46782927 | Msa0024340:intron | 25.0% |
| ! | AATGACAGGGAAAAAAAAAT+TGG | - | chr1_1:46782979-46782998 | None:intergenic | 25.0% |
| ! | TATAAACTAAAAACCTAGAG+TGG | - | chr1_1:46783091-46783110 | None:intergenic | 25.0% |
| ! | ATCTACTTAATCTTCTTCTT+TGG | - | chr1_1:46783192-46783211 | None:intergenic | 25.0% |
| ! | GAAGAAGATTAAGTAGATTA+TGG | + | chr1_1:46783194-46783213 | Msa0024340:exon | 25.0% |
| ! | CAACTGTATTAATCAACAAT+TGG | - | chr1_1:46783261-46783280 | None:intergenic | 25.0% |
| ! | GAATTGAAACTTTATATGCT+GGG | - | chr1_1:46782009-46782028 | None:intergenic | 25.0% |
| ! | AGAATTGAAACTTTATATGC+TGG | - | chr1_1:46782010-46782029 | None:intergenic | 25.0% |
| !!! | CTTGAACACGTTTAATTTTT+AGG | + | chr1_1:46782626-46782645 | Msa0024340:intron | 25.0% |
| !!! | CGTTTAATTTTTAGGATTCA+TGG | + | chr1_1:46782634-46782653 | Msa0024340:intron | 25.0% |
| !! | ACATCACTACATTTTTACAT+TGG | + | chr1_1:46782868-46782887 | Msa0024340:intron | 25.0% |
| !! | ACATTGGCATTTAAGATTAA+TGG | + | chr1_1:46782884-46782903 | Msa0024340:intron | 25.0% |
| ! | TATAACATGTTGAAAGTTAG+AGG | + | chr1_1:46782907-46782926 | Msa0024340:intron | 25.0% |
| ! | ATAACATGTTGAAAGTTAGA+GGG | + | chr1_1:46782908-46782927 | Msa0024340:intron | 25.0% |
| ! | AATGACAGGGAAAAAAAAAT+TGG | - | chr1_1:46782979-46782998 | None:intergenic | 25.0% |
| ! | TATAAACTAAAAACCTAGAG+TGG | - | chr1_1:46783091-46783110 | None:intergenic | 25.0% |
| ! | ATCTACTTAATCTTCTTCTT+TGG | - | chr1_1:46783192-46783211 | None:intergenic | 25.0% |
| ! | GAAGAAGATTAAGTAGATTA+TGG | + | chr1_1:46783194-46783213 | Msa0024340:exon | 25.0% |
| ! | CAACTGTATTAATCAACAAT+TGG | - | chr1_1:46783261-46783280 | None:intergenic | 25.0% |
| CTACGGTTTGATAAAATTTG+AGG | - | chr1_1:46781980-46781999 | None:intergenic | 30.0% | |
| !!! | TATATGCTGGGTTTTTTCTA+CGG | - | chr1_1:46781997-46782016 | None:intergenic | 30.0% |
| !! | TCTGACATTTTTGATTATCC+AGG | + | chr1_1:46782249-46782268 | Msa0024340:intron | 30.0% |
| TTGAATGTTGTAATCAGCTA+GGG | - | chr1_1:46782334-46782353 | None:intergenic | 30.0% | |
| TTTGAATGTTGTAATCAGCT+AGG | - | chr1_1:46782335-46782354 | None:intergenic | 30.0% | |
| AGCTGATTACAACATTCAAA+AGG | + | chr1_1:46782335-46782354 | Msa0024340:CDS | 30.0% | |
| GCTGATTACAACATTCAAAA+GGG | + | chr1_1:46782336-46782355 | Msa0024340:CDS | 30.0% | |
| ACGTAATTCAGTGTAATCAT+AGG | + | chr1_1:46782770-46782789 | Msa0024340:intron | 30.0% | |
| GTAATCATAGGTGTTAATGT+TGG | + | chr1_1:46782782-46782801 | Msa0024340:intron | 30.0% | |
| GCATCTAACAAAAAATGACA+GGG | - | chr1_1:46782992-46783011 | None:intergenic | 30.0% | |
| AGCATCTAACAAAAAATGAC+AGG | - | chr1_1:46782993-46783012 | None:intergenic | 30.0% | |
| TGAGATCATGTGTTTAGTAT+TGG | + | chr1_1:46783279-46783298 | Msa0024340:three_prime_UTR | 30.0% | |
| ATCCTCAAAAACTAAAGACT+AGG | - | chr1_1:46783386-46783405 | None:intergenic | 30.0% | |
| ATGACTCATAGCAACAATTT+CGG | + | chr1_1:46783408-46783427 | Msa0024340:three_prime_UTR | 30.0% | |
| CTACGGTTTGATAAAATTTG+AGG | - | chr1_1:46781980-46781999 | None:intergenic | 30.0% | |
| !!! | TATATGCTGGGTTTTTTCTA+CGG | - | chr1_1:46781997-46782016 | None:intergenic | 30.0% |
| !! | TCTGACATTTTTGATTATCC+AGG | + | chr1_1:46782249-46782268 | Msa0024340:intron | 30.0% |
| TTGAATGTTGTAATCAGCTA+GGG | - | chr1_1:46782334-46782353 | None:intergenic | 30.0% | |
| TTTGAATGTTGTAATCAGCT+AGG | - | chr1_1:46782335-46782354 | None:intergenic | 30.0% | |
| AGCTGATTACAACATTCAAA+AGG | + | chr1_1:46782335-46782354 | Msa0024340:CDS | 30.0% | |
| GCTGATTACAACATTCAAAA+GGG | + | chr1_1:46782336-46782355 | Msa0024340:CDS | 30.0% | |
| ACGTAATTCAGTGTAATCAT+AGG | + | chr1_1:46782770-46782789 | Msa0024340:intron | 30.0% | |
| GTAATCATAGGTGTTAATGT+TGG | + | chr1_1:46782782-46782801 | Msa0024340:intron | 30.0% | |
| GCATCTAACAAAAAATGACA+GGG | - | chr1_1:46782992-46783011 | None:intergenic | 30.0% | |
| AGCATCTAACAAAAAATGAC+AGG | - | chr1_1:46782993-46783012 | None:intergenic | 30.0% | |
| TGAGATCATGTGTTTAGTAT+TGG | + | chr1_1:46783279-46783298 | Msa0024340:three_prime_UTR | 30.0% | |
| ATCCTCAAAAACTAAAGACT+AGG | - | chr1_1:46783386-46783405 | None:intergenic | 30.0% | |
| ATGACTCATAGCAACAATTT+CGG | + | chr1_1:46783408-46783427 | Msa0024340:three_prime_UTR | 30.0% | |
| AATTGCGAAACGTGAAGAAA+GGG | - | chr1_1:46782038-46782057 | None:intergenic | 35.0% | |
| ! | ATTTTCGTGAAAACCCTAAC+AGG | + | chr1_1:46782104-46782123 | Msa0024340:CDS | 35.0% |
| ! | TTTTCGTGAAAACCCTAACA+GGG | + | chr1_1:46782105-46782124 | Msa0024340:CDS | 35.0% |
| ACCTTCTTTGTCTTGAATCT+TGG | - | chr1_1:46782183-46782202 | None:intergenic | 35.0% | |
| TATTATCGAGCCTTCTTTGA+TGG | + | chr1_1:46782484-46782503 | Msa0024340:CDS | 35.0% | |
| !!! | GTCCTAGTCTTTAGTTTTTG+AGG | + | chr1_1:46783381-46783400 | Msa0024340:three_prime_UTR | 35.0% |
| AATTGCGAAACGTGAAGAAA+GGG | - | chr1_1:46782038-46782057 | None:intergenic | 35.0% | |
| ! | ATTTTCGTGAAAACCCTAAC+AGG | + | chr1_1:46782104-46782123 | Msa0024340:CDS | 35.0% |
| ! | TTTTCGTGAAAACCCTAACA+GGG | + | chr1_1:46782105-46782124 | Msa0024340:CDS | 35.0% |
| ACCTTCTTTGTCTTGAATCT+TGG | - | chr1_1:46782183-46782202 | None:intergenic | 35.0% | |
| TATTATCGAGCCTTCTTTGA+TGG | + | chr1_1:46782484-46782503 | Msa0024340:CDS | 35.0% | |
| !!! | GTCCTAGTCTTTAGTTTTTG+AGG | + | chr1_1:46783381-46783400 | Msa0024340:three_prime_UTR | 35.0% |
| ATTGCGAAACGTGAAGAAAG+GGG | - | chr1_1:46782037-46782056 | None:intergenic | 40.0% | |
| GAATTGCGAAACGTGAAGAA+AGG | - | chr1_1:46782039-46782058 | None:intergenic | 40.0% | |
| AGTAATCGTCTTCCCTGTTA+GGG | - | chr1_1:46782120-46782139 | None:intergenic | 40.0% | |
| GCCAAGATTCAAGACAAAGA+AGG | + | chr1_1:46782179-46782198 | Msa0024340:CDS | 40.0% | |
| AAAATCAAACGCTGCTGATC+TGG | - | chr1_1:46782282-46782301 | None:intergenic | 40.0% | |
| CTACATTGCATCTTGTGCTT+AGG | + | chr1_1:46782450-46782469 | Msa0024340:CDS | 40.0% | |
| AAAAAAGGTGAAGGTTGCAG+AGG | - | chr1_1:46782560-46782579 | None:intergenic | 40.0% | |
| GTATGTGTCTGTGCTTTCAT+AGG | - | chr1_1:46782700-46782719 | None:intergenic | 40.0% | |
| ATACAGACACCGACAATACA+CGG | + | chr1_1:46782716-46782735 | Msa0024340:intron | 40.0% | |
| TATGAAGCACAGACACTCTT+TGG | - | chr1_1:46782844-46782863 | None:intergenic | 40.0% | |
| !! | AAAGAGTGTCTGTGCTTCAT+AGG | + | chr1_1:46782843-46782862 | Msa0024340:intron | 40.0% |
| AACTGCAGGAAAAAGAAGTG+TGG | + | chr1_1:46783039-46783058 | Msa0024340:CDS | 40.0% | |
| CTCAACTGCAAGATGATGTA+TGG | - | chr1_1:46783168-46783187 | None:intergenic | 40.0% | |
| CATACATCATCTTGCAGTTG+AGG | + | chr1_1:46783166-46783185 | Msa0024340:intron | 40.0% | |
| ! | TGATGTTGTTGTTCTCGTGT+GGG | + | chr1_1:46783220-46783239 | Msa0024340:three_prime_UTR | 40.0% |
| ATTGCGAAACGTGAAGAAAG+GGG | - | chr1_1:46782037-46782056 | None:intergenic | 40.0% | |
| GAATTGCGAAACGTGAAGAA+AGG | - | chr1_1:46782039-46782058 | None:intergenic | 40.0% | |
| AGTAATCGTCTTCCCTGTTA+GGG | - | chr1_1:46782120-46782139 | None:intergenic | 40.0% | |
| GCCAAGATTCAAGACAAAGA+AGG | + | chr1_1:46782179-46782198 | Msa0024340:CDS | 40.0% | |
| AAAATCAAACGCTGCTGATC+TGG | - | chr1_1:46782282-46782301 | None:intergenic | 40.0% | |
| CTACATTGCATCTTGTGCTT+AGG | + | chr1_1:46782450-46782469 | Msa0024340:CDS | 40.0% | |
| AAAAAAGGTGAAGGTTGCAG+AGG | - | chr1_1:46782560-46782579 | None:intergenic | 40.0% | |
| GTATGTGTCTGTGCTTTCAT+AGG | - | chr1_1:46782700-46782719 | None:intergenic | 40.0% | |
| ATACAGACACCGACAATACA+CGG | + | chr1_1:46782716-46782735 | Msa0024340:intron | 40.0% | |
| TATGAAGCACAGACACTCTT+TGG | - | chr1_1:46782844-46782863 | None:intergenic | 40.0% | |
| !! | AAAGAGTGTCTGTGCTTCAT+AGG | + | chr1_1:46782843-46782862 | Msa0024340:intron | 40.0% |
| AACTGCAGGAAAAAGAAGTG+TGG | + | chr1_1:46783039-46783058 | Msa0024340:CDS | 40.0% | |
| CTCAACTGCAAGATGATGTA+TGG | - | chr1_1:46783168-46783187 | None:intergenic | 40.0% | |
| CATACATCATCTTGCAGTTG+AGG | + | chr1_1:46783166-46783185 | Msa0024340:intron | 40.0% | |
| ! | TGATGTTGTTGTTCTCGTGT+GGG | + | chr1_1:46783220-46783239 | Msa0024340:three_prime_UTR | 40.0% |
| GAGTAATCGTCTTCCCTGTT+AGG | - | chr1_1:46782121-46782140 | None:intergenic | 45.0% | |
| !! | CTTGGCTTTGACATTGTCGA+TGG | - | chr1_1:46782165-46782184 | None:intergenic | 45.0% |
| !! | CAGCAGCGTTTGATTTTTGC+TGG | + | chr1_1:46782285-46782304 | Msa0024340:CDS | 45.0% |
| GCTGGAAAACAGCTTGAAGA+TGG | + | chr1_1:46782303-46782322 | Msa0024340:CDS | 45.0% | |
| CTAGCCAAAGCCATCAAAGA+AGG | - | chr1_1:46782497-46782516 | None:intergenic | 45.0% | |
| !! | CTTCTTTGATGGCTTTGGCT+AGG | + | chr1_1:46782495-46782514 | Msa0024340:CDS | 45.0% |
| GTTGCAGAGGAACATACTTG+CGG | - | chr1_1:46782547-46782566 | None:intergenic | 45.0% | |
| ! | TGTTGGTGTCCGTGTATTGT+CGG | - | chr1_1:46782728-46782747 | None:intergenic | 45.0% |
| ! | TCTTTGGATTAGGTGTGTCC+CGG | - | chr1_1:46782828-46782847 | None:intergenic | 45.0% |
| GCACAGACACTCTTTGGATT+AGG | - | chr1_1:46782838-46782857 | None:intergenic | 45.0% | |
| GAAGTGTGGTCACAGTAATC+AGG | + | chr1_1:46783053-46783072 | Msa0024340:CDS | 45.0% | |
| ! | GTGTGACTGATTTCCACTCT+AGG | + | chr1_1:46783075-46783094 | Msa0024340:intron | 45.0% |
| ! | CTGATGTTGTTGTTCTCGTG+TGG | + | chr1_1:46783219-46783238 | Msa0024340:three_prime_UTR | 45.0% |
| ! | GATGTTGTTGTTCTCGTGTG+GGG | + | chr1_1:46783221-46783240 | Msa0024340:three_prime_UTR | 45.0% |
| GAGTAATCGTCTTCCCTGTT+AGG | - | chr1_1:46782121-46782140 | None:intergenic | 45.0% | |
| !! | CTTGGCTTTGACATTGTCGA+TGG | - | chr1_1:46782165-46782184 | None:intergenic | 45.0% |
| !! | CAGCAGCGTTTGATTTTTGC+TGG | + | chr1_1:46782285-46782304 | Msa0024340:CDS | 45.0% |
| GCTGGAAAACAGCTTGAAGA+TGG | + | chr1_1:46782303-46782322 | Msa0024340:CDS | 45.0% | |
| CTAGCCAAAGCCATCAAAGA+AGG | - | chr1_1:46782497-46782516 | None:intergenic | 45.0% | |
| !! | CTTCTTTGATGGCTTTGGCT+AGG | + | chr1_1:46782495-46782514 | Msa0024340:CDS | 45.0% |
| GTTGCAGAGGAACATACTTG+CGG | - | chr1_1:46782547-46782566 | None:intergenic | 45.0% | |
| ! | TGTTGGTGTCCGTGTATTGT+CGG | - | chr1_1:46782728-46782747 | None:intergenic | 45.0% |
| ! | TCTTTGGATTAGGTGTGTCC+CGG | - | chr1_1:46782828-46782847 | None:intergenic | 45.0% |
| GCACAGACACTCTTTGGATT+AGG | - | chr1_1:46782838-46782857 | None:intergenic | 45.0% | |
| GAAGTGTGGTCACAGTAATC+AGG | + | chr1_1:46783053-46783072 | Msa0024340:CDS | 45.0% | |
| ! | GTGTGACTGATTTCCACTCT+AGG | + | chr1_1:46783075-46783094 | Msa0024340:intron | 45.0% |
| ! | CTGATGTTGTTGTTCTCGTG+TGG | + | chr1_1:46783219-46783238 | Msa0024340:three_prime_UTR | 45.0% |
| ! | GATGTTGTTGTTCTCGTGTG+GGG | + | chr1_1:46783221-46783240 | Msa0024340:three_prime_UTR | 45.0% |
| !!! | AAATTTTAATTTTGATTTAT+TGG | + | chr1_1:46782407-46782426 | Msa0024340:intron | 5.0% |
| !! | CAAAAAATAAAAAATAAAAA+AGG | - | chr1_1:46782575-46782594 | None:intergenic | 5.0% |
| !!! | AAATTTTAATTTTGATTTAT+TGG | + | chr1_1:46782407-46782426 | Msa0024340:intron | 5.0% |
| !! | CAAAAAATAAAAAATAAAAA+AGG | - | chr1_1:46782575-46782594 | None:intergenic | 5.0% |
| TCAAACGCTGCTGATCTGGT+GGG | - | chr1_1:46782278-46782297 | None:intergenic | 50.0% | |
| ATCAAACGCTGCTGATCTGG+TGG | - | chr1_1:46782279-46782298 | None:intergenic | 50.0% | |
| CATCTTGTGCTTAGGCTTCG+TGG | + | chr1_1:46782458-46782477 | Msa0024340:CDS | 50.0% | |
| ! | CGAGCCTTCTTTGATGGCTT+TGG | + | chr1_1:46782490-46782509 | Msa0024340:CDS | 50.0% |
| AGGAACATACTTGCGGCAGA+TGG | - | chr1_1:46782540-46782559 | None:intergenic | 50.0% | |
| GAAAGTTAGAGGGTCGTCAG+TGG | + | chr1_1:46782918-46782937 | Msa0024340:intron | 50.0% | |
| CTATGCTCGTCTGCATCCAA+GGG | + | chr1_1:46783011-46783030 | Msa0024340:CDS | 50.0% | |
| TCAAACGCTGCTGATCTGGT+GGG | - | chr1_1:46782278-46782297 | None:intergenic | 50.0% | |
| ATCAAACGCTGCTGATCTGG+TGG | - | chr1_1:46782279-46782298 | None:intergenic | 50.0% | |
| CATCTTGTGCTTAGGCTTCG+TGG | + | chr1_1:46782458-46782477 | Msa0024340:CDS | 50.0% | |
| ! | CGAGCCTTCTTTGATGGCTT+TGG | + | chr1_1:46782490-46782509 | Msa0024340:CDS | 50.0% |
| AGGAACATACTTGCGGCAGA+TGG | - | chr1_1:46782540-46782559 | None:intergenic | 50.0% | |
| GAAAGTTAGAGGGTCGTCAG+TGG | + | chr1_1:46782918-46782937 | Msa0024340:intron | 50.0% | |
| CTATGCTCGTCTGCATCCAA+GGG | + | chr1_1:46783011-46783030 | Msa0024340:CDS | 50.0% | |
| TGCTGATCTGGTGGGATACC+TGG | - | chr1_1:46782270-46782289 | None:intergenic | 55.0% | |
| CTTGTGCTTAGGCTTCGTGG+TGG | + | chr1_1:46782461-46782480 | Msa0024340:CDS | 55.0% | |
| CACCGACGTGTATCCATCAC+CGG | + | chr1_1:46782806-46782825 | Msa0024340:intron | 55.0% | |
| ACCGACGTGTATCCATCACC+GGG | + | chr1_1:46782807-46782826 | Msa0024340:intron | 55.0% | |
| !! | TCCCGGTGATGGATACACGT+CGG | - | chr1_1:46782811-46782830 | None:intergenic | 55.0% |
| GATTAGGTGTGTCCCGGTGA+TGG | - | chr1_1:46782822-46782841 | None:intergenic | 55.0% | |
| GCTATGCTCGTCTGCATCCA+AGG | + | chr1_1:46783010-46783029 | Msa0024340:CDS | 55.0% | |
| ATCCAAGGGCTGTGAACTGC+AGG | + | chr1_1:46783025-46783044 | Msa0024340:CDS | 55.0% | |
| TTCCTGCAGTTCACAGCCCT+TGG | - | chr1_1:46783030-46783049 | None:intergenic | 55.0% | |
| ! | GTTGTTGTTCTCGTGTGGGG+TGG | + | chr1_1:46783224-46783243 | Msa0024340:three_prime_UTR | 55.0% |
| TGCTGATCTGGTGGGATACC+TGG | - | chr1_1:46782270-46782289 | None:intergenic | 55.0% | |
| CTTGTGCTTAGGCTTCGTGG+TGG | + | chr1_1:46782461-46782480 | Msa0024340:CDS | 55.0% | |
| CACCGACGTGTATCCATCAC+CGG | + | chr1_1:46782806-46782825 | Msa0024340:intron | 55.0% | |
| ACCGACGTGTATCCATCACC+GGG | + | chr1_1:46782807-46782826 | Msa0024340:intron | 55.0% | |
| !! | TCCCGGTGATGGATACACGT+CGG | - | chr1_1:46782811-46782830 | None:intergenic | 55.0% |
| GATTAGGTGTGTCCCGGTGA+TGG | - | chr1_1:46782822-46782841 | None:intergenic | 55.0% | |
| GCTATGCTCGTCTGCATCCA+AGG | + | chr1_1:46783010-46783029 | Msa0024340:CDS | 55.0% | |
| ATCCAAGGGCTGTGAACTGC+AGG | + | chr1_1:46783025-46783044 | Msa0024340:CDS | 55.0% | |
| TTCCTGCAGTTCACAGCCCT+TGG | - | chr1_1:46783030-46783049 | None:intergenic | 55.0% | |
| ! | GTTGTTGTTCTCGTGTGGGG+TGG | + | chr1_1:46783224-46783243 | Msa0024340:three_prime_UTR | 55.0% |
| TCTCGTGTGGGGTGGTGAGC+TGG | + | chr1_1:46783232-46783251 | Msa0024340:three_prime_UTR | 65.0% | |
| TCTCGTGTGGGGTGGTGAGC+TGG | + | chr1_1:46783232-46783251 | Msa0024340:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 46781972 | 46783515 | 46781972 | ID=Msa0024340;Name=Msa0024340 |
| chr1_1 | mRNA | 46781972 | 46783515 | 46781972 | ID=Msa0024340-mRNA-1;Parent=Msa0024340;Name=Msa0024340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=126|1|1|1|1|1|5|306|128 |
| chr1_1 | exon | 46781972 | 46782200 | 46781972 | ID=Msa0024340-mRNA-1:exon:13260;Parent=Msa0024340-mRNA-1 |
| chr1_1 | exon | 46782271 | 46782357 | 46782271 | ID=Msa0024340-mRNA-1:exon:13261;Parent=Msa0024340-mRNA-1 |
| chr1_1 | exon | 46782447 | 46782549 | 46782447 | ID=Msa0024340-mRNA-1:exon:13262;Parent=Msa0024340-mRNA-1 |
| chr1_1 | exon | 46783008 | 46783074 | 46783008 | ID=Msa0024340-mRNA-1:exon:13263;Parent=Msa0024340-mRNA-1 |
| chr1_1 | exon | 46783183 | 46783515 | 46783183 | ID=Msa0024340-mRNA-1:exon:13264;Parent=Msa0024340-mRNA-1 |
| chr1_1 | five_prime_UTR | 46781972 | 46782097 | 46781972 | ID=Msa0024340-mRNA-1:five_prime_utr;Parent=Msa0024340-mRNA-1 |
| chr1_1 | CDS | 46782098 | 46782200 | 46782098 | ID=Msa0024340-mRNA-1:cds;Parent=Msa0024340-mRNA-1 |
| chr1_1 | CDS | 46782271 | 46782357 | 46782271 | ID=Msa0024340-mRNA-1:cds;Parent=Msa0024340-mRNA-1 |
| chr1_1 | CDS | 46782447 | 46782549 | 46782447 | ID=Msa0024340-mRNA-1:cds;Parent=Msa0024340-mRNA-1 |
| chr1_1 | CDS | 46783008 | 46783074 | 46783008 | ID=Msa0024340-mRNA-1:cds;Parent=Msa0024340-mRNA-1 |
| chr1_1 | CDS | 46783183 | 46783209 | 46783183 | ID=Msa0024340-mRNA-1:cds;Parent=Msa0024340-mRNA-1 |
| chr1_1 | three_prime_UTR | 46783210 | 46783515 | 46783210 | ID=Msa0024340-mRNA-1:three_prime_utr;Parent=Msa0024340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
