AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339250 MtrunA17_Chr5g0425951 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr4g0030431 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr3g0100121 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr3g0113681 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr2g0327641 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr3g0103351 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr8g0352791 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr3g0103821 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr3g0104031 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr7g0225731 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr3g0103801 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr3g0103881 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr7g0262791 100.000 103 0 0 1 103 1 103 8.93e-68 207
Msa0339250 MtrunA17_Chr4g0072411 100.000 103 0 0 1 103 59 161 1.75e-67 208
Msa0339250 MtrunA17_Chr2g0327651 76.744 86 20 0 180 265 22 107 2.39e-40 137
Msa0339250 MtrunA17_Chr3g0115141 42.857 140 73 3 178 312 58 195 3.07e-30 114
Msa0339250 MtrunA17_Chr2g0286171 44.961 129 65 2 189 312 70 197 7.39e-30 112
Msa0339250 MtrunA17_Chr4g0003361 45.185 135 68 3 182 312 58 190 3.21e-29 110
Msa0339250 MtrunA17_Chr7g0217811 42.857 133 70 2 188 314 64 196 3.10e-28 108
Msa0339250 MtrunA17_Chr8g0343954 39.735 151 82 3 168 310 44 193 7.53e-28 107
Msa0339250 MtrunA17_Chr8g0343961 41.722 151 79 3 168 310 44 193 9.78e-28 107
Msa0339250 MtrunA17_Chr2g0302541 41.353 133 72 2 188 314 64 196 3.72e-27 105
Msa0339250 MtrunA17_Chr8g0343934 41.732 127 69 1 189 310 67 193 6.80e-27 105
Msa0339250 MtrunA17_Chr2g0301611 45.000 120 62 1 197 312 75 194 6.95e-27 105
Msa0339250 MtrunA17_Chr4g0012651 41.353 133 72 2 188 314 64 196 2.58e-26 103
Msa0339250 MtrunA17_Chr8g0344051 40.157 127 72 1 190 312 71 197 7.66e-26 102
Msa0339250 MtrunA17_Chr2g0297231 44.262 122 64 1 195 312 73 194 8.89e-26 102
Msa0339250 MtrunA17_Chr8g0344041 38.129 139 82 1 178 312 60 198 1.62e-25 101
Msa0339250 MtrunA17_Chr2g0302171 42.748 131 69 2 188 312 64 194 1.82e-25 101
Msa0339250 MtrunA17_Chr2g0297241 44.167 120 63 1 197 312 75 194 2.26e-25 100
Msa0339250 MtrunA17_Chr2g0313961 43.443 122 65 1 197 314 75 196 3.68e-25 100
Msa0339250 MtrunA17_Chr8g0344031 37.857 140 82 2 177 312 58 196 1.23e-24 99.0
Msa0339250 MtrunA17_Chr3g0084511 41.538 130 70 2 190 314 67 195 1.65e-24 98.6
Msa0339250 MtrunA17_Chr3g0084531 41.538 130 70 2 190 314 68 196 3.00e-24 97.8
Msa0339250 MtrunA17_Chr5g0411961 38.298 141 82 2 178 314 57 196 8.35e-24 96.7
Msa0339250 MtrunA17_Chr3g0084521 40.769 130 71 2 190 314 67 195 9.43e-24 96.7
Msa0339250 MtrunA17_Chr8g0343911 38.931 131 71 4 189 312 65 193 8.37e-23 94.0
Msa0339250 MtrunA17_Chr8g0344021 40.625 128 70 2 190 312 71 197 2.15e-22 93.2
Msa0339250 MtrunA17_Chr8g0343921 34.752 141 87 2 177 312 52 192 1.56e-21 90.5
Msa0339250 MtrunA17_Chr2g0300561 41.346 104 59 2 192 294 70 172 5.11e-20 86.7
Msa0339250 MtrunA17_Chr2g0300591 37.000 100 62 1 192 290 70 169 2.89e-19 84.3
Msa0339250 MtrunA17_Chr2g0300581 37.000 100 62 1 192 290 70 169 3.30e-19 84.3
Msa0339250 MtrunA17_Chr3g0130241 40.000 95 54 2 198 290 149 242 4.63e-16 77.0
Msa0339250 MtrunA17_Chr1g0210761 40.217 92 54 1 200 290 79 170 2.56e-15 73.6
Msa0339250 MtrunA17_Chr1g0193671 34.483 116 75 1 197 311 81 196 2.63e-15 73.6
Msa0339250 MtrunA17_Chr8g0335851 35.106 94 60 1 198 290 86 179 2.84e-15 73.6
Msa0339250 MtrunA17_Chr6g0449771 30.366 191 115 5 124 303 11 194 5.72e-15 72.8
Msa0339250 MtrunA17_Chr1g0189841 35.577 104 63 1 191 290 75 178 5.80e-15 72.8
Msa0339250 MtrunA17_Chr6g0449751 35.537 121 70 2 191 303 74 194 6.77e-15 72.4
Msa0339250 MtrunA17_Chr6g0449731 35.537 121 70 2 191 303 74 194 6.84e-15 72.4
Msa0339250 MtrunA17_Chr1g0156131 34.286 105 66 1 191 292 68 172 6.84e-15 72.4
Msa0339250 MtrunA17_Chr2g0292901 34.951 103 64 1 191 290 72 174 7.19e-15 72.4
Msa0339250 MtrunA17_Chr6g0449761 35.537 121 70 2 191 303 74 194 8.40e-15 72.8
Msa0339250 MtrunA17_Chr2g0292831 33.981 103 65 1 191 290 71 173 1.36e-14 71.6
Msa0339250 MtrunA17_Chr4g0007041 35.577 104 63 1 191 290 74 177 1.57e-14 71.6
Msa0339250 MtrunA17_Chr3g0084551 33.083 133 77 3 188 314 64 190 1.69e-14 71.6
Msa0339250 MtrunA17_Chr4g0007031 35.577 104 63 1 191 290 74 177 1.99e-14 71.2
Msa0339250 MtrunA17_Chr5g0419971 35.577 104 63 1 191 290 74 177 1.99e-14 71.2
Msa0339250 MtrunA17_Chr5g0419981 35.577 104 63 1 191 290 74 177 1.99e-14 71.2
Msa0339250 MtrunA17_Chr4g0007051 35.577 104 63 1 191 290 74 177 2.07e-14 71.2
Msa0339250 MtrunA17_Chr1g0178711 32.353 102 68 1 190 290 83 184 2.21e-14 71.2
Msa0339250 MtrunA17_Chr2g0285871 34.615 104 64 1 191 290 74 177 1.71e-13 68.6
Msa0339250 MtrunA17_Chr2g0321581 34.746 118 75 2 199 314 74 191 1.44e-12 65.9
Msa0339250 MtrunA17_Chr1g0193421 36.842 95 59 1 197 290 82 176 1.82e-12 65.9
Msa0339250 MtrunA17_Chr6g0449791 38.043 92 53 1 203 290 86 177 2.07e-12 65.5
Msa0339250 MtrunA17_Chr5g0414971 34.579 107 67 3 192 296 80 185 3.10e-12 65.1
Msa0339250 MtrunA17_Chr2g0321591 33.898 118 76 2 199 314 74 191 3.80e-12 64.7
Msa0339250 MtrunA17_Chr2g0292861 35.577 104 63 2 191 290 36 139 3.94e-12 63.9
Msa0339250 MtrunA17_Chr7g0271211 36.559 93 58 1 197 288 78 170 8.60e-12 63.5
Msa0339250 MtrunA17_Chr2g0321601 33.333 120 76 4 198 314 72 190 6.87e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339250 AT3G53730.1 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT1G07820.2 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT1G07820.1 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT5G59690.1 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT3G46320.1 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT2G28740.1 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT1G07660.1 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT3G45930.1 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT5G59970.1 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT5G59970.2 100.000 103 0 0 1 103 1 103 1.23e-67 207
Msa0339250 AT1G07660.2 83.495 103 0 1 1 103 1 86 3.56e-50 161
Msa0339250 AT1G72610.1 35.659 129 78 2 189 312 65 193 2.30e-20 87.8
Msa0339250 AT3G04200.1 34.615 182 105 6 123 296 14 189 8.86e-19 84.0
Msa0339250 AT5G38960.1 41.509 106 58 2 197 299 87 191 1.50e-18 83.2
Msa0339250 AT5G38910.1 41.237 97 54 1 197 290 84 180 4.16e-17 79.3
Msa0339250 AT5G20630.1 33.846 130 78 3 192 314 71 199 8.71e-17 78.2
Msa0339250 AT5G38940.1 42.857 91 49 1 203 290 92 182 1.40e-16 77.8
Msa0339250 AT3G05950.1 40.816 98 54 1 197 290 85 182 1.54e-16 77.8
Msa0339250 AT5G38940.2 42.857 91 49 1 203 290 116 206 2.02e-16 77.8
Msa0339250 AT5G38930.1 42.857 91 49 1 203 290 92 182 2.87e-16 77.0
Msa0339250 AT5G39150.1 40.206 97 54 1 197 289 83 179 3.56e-16 76.6
Msa0339250 AT5G39110.1 40.206 97 54 1 197 289 84 180 3.58e-16 76.6
Msa0339250 AT5G39180.1 40.206 97 54 1 197 289 83 179 3.63e-16 76.6
Msa0339250 AT5G39120.1 40.206 97 54 1 197 289 83 179 3.77e-16 76.6
Msa0339250 AT5G61750.1 36.170 94 59 1 199 291 81 174 2.38e-15 73.9
Msa0339250 AT5G39190.2 38.144 97 56 1 197 289 61 157 3.26e-15 73.6
Msa0339250 AT5G39160.2 38.144 97 56 1 197 289 61 157 3.39e-15 73.6
Msa0339250 AT5G39160.3 38.144 97 56 1 197 289 79 175 5.10e-15 73.2
Msa0339250 AT5G39190.1 38.144 97 56 1 197 289 83 179 5.24e-15 73.2
Msa0339250 AT5G39160.1 38.144 97 56 1 197 289 83 179 5.67e-15 73.2
Msa0339250 AT5G39130.1 36.082 97 58 1 197 289 83 179 2.66e-14 71.2
Msa0339250 AT4G14630.1 39.560 91 51 1 203 289 92 182 2.68e-14 71.2
Msa0339250 AT1G02335.1 38.947 95 57 1 197 290 82 176 5.89e-14 70.5
Msa0339250 AT3G04190.1 33.962 106 66 1 190 291 78 183 5.94e-13 67.4
Msa0339250 AT3G10080.1 35.354 99 63 1 194 291 85 183 6.51e-12 64.7
Msa0339250 AT3G10080.2 35.714 98 62 1 194 290 156 253 9.41e-12 65.1
Msa0339250 AT1G10460.1 33.010 103 67 2 190 290 74 176 1.45e-11 63.5
Msa0339250 AT3G62020.2 35.417 96 60 2 197 290 52 147 1.47e-11 62.8
Msa0339250 AT3G04180.1 29.518 166 104 5 133 291 24 183 1.66e-11 63.5
Msa0339250 AT3G62020.1 35.417 96 60 2 197 290 81 176 2.11e-11 63.2
Msa0339250 AT1G09560.1 36.264 91 57 1 201 290 86 176 4.36e-11 62.0

Find 74 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAAGGAAGGACTCTTTA+TGG 0.217305 2_4:+60320230 Msa0339250:CDS
TTGCGATGGTATTACTTATT+GGG 0.261353 2_4:+60321216 Msa0339250:CDS
GGAAGGACTCTTTATGGATT+TGG 0.266178 2_4:+60320236 Msa0339250:CDS
CCCGCTGGTTTCCAGTTTGC+TGG 0.285182 2_4:+60322205 Msa0339250:CDS
GTTGCGATGGTATTACTTAT+TGG 0.321655 2_4:+60321215 Msa0339250:CDS
GAAGGACTCTTTATGGATTT+GGG 0.322097 2_4:+60320237 Msa0339250:CDS
AGGAAATGCACGCATCCTTT+AGG 0.367709 2_4:-60322127 None:intergenic
CAACGGCATTGGTATCTCTA+TGG 0.371115 2_4:+60321946 Msa0339250:CDS
GAAGCCTGCGATTCGTCGTT+TGG 0.391757 2_4:+60320046 Msa0339250:CDS
TGGAAAAGGTGGAAAGGGAT+TGG 0.405096 2_4:+60319965 Msa0339250:CDS
TTGAGTAACAGTGGAGTGTT+TGG 0.418160 2_4:-60322233 None:intergenic
TTGTTGCGAATCAAGATGTC+TGG 0.418777 2_4:+60319939 None:intergenic
TTGTTCAGCTATAAATTTCA+CGG 0.423417 2_4:+60321519 Msa0339250:CDS
GGAAAAGGTGGAAAGGGATT+GGG 0.428595 2_4:+60319966 Msa0339250:CDS
TTTGCGAAGGTTGATCGAAT+AGG 0.428662 2_4:-60321583 None:intergenic
GACATTGTTGAATGATTCAA+TGG 0.433344 2_4:-60321885 None:intergenic
GGAAAGGGATTGGGAAAGGG+AGG 0.438545 2_4:+60319975 Msa0339250:CDS
GAAATTTACTCATCACTGTC+GGG 0.445530 2_4:-60321916 None:intergenic
GTTTGGTGTTGCCAGCAAAC+TGG 0.453009 2_4:-60322216 None:intergenic
TGGTATTACTTATTGGGGTA+TGG 0.468441 2_4:+60321222 Msa0339250:CDS
ATTAAAGACCAATGCAGTAG+TGG 0.472891 2_4:+60321247 Msa0339250:CDS
ATACCAATGCCGTTGAGAGC+TGG 0.477606 2_4:-60321938 None:intergenic
ATGCAGTAGTGGGGTACTCT+TGG 0.479601 2_4:+60321258 Msa0339250:CDS
TAGAGCAGAAGTGGGAGCGA+AGG 0.480120 2_4:+60321970 Msa0339250:CDS
AAGATGTCTGGACGTGGAAA+AGG 0.490201 2_4:+60319951 None:intergenic
TTTCCAGCTCTCAACGGCAT+TGG 0.491525 2_4:+60321935 Msa0339250:CDS
CTCTATGGTTAGAGCAGAAG+TGG 0.492584 2_4:+60321961 Msa0339250:CDS
GGTGGAAAGGGATTGGGAAA+GGG 0.496399 2_4:+60319972 Msa0339250:CDS
GTGCTTCGTGATAACATTCA+AGG 0.499787 2_4:+60320017 Msa0339250:CDS
AATTGAATGTACGATAAGAA+AGG 0.506331 2_4:-60321606 None:intergenic
AGGTGGAAAGGGATTGGGAA+AGG 0.506594 2_4:+60319971 Msa0339250:CDS
GATGTTATTGTGTTTCCTAA+AGG 0.508475 2_4:+60322112 Msa0339250:CDS
GAGAAAGACTGTTACTGCTA+TGG 0.515154 2_4:+60320187 Msa0339250:CDS
GTGCATTTCCTTGTCAACTC+TGG 0.516809 2_4:+60322139 Msa0339250:CDS
TGTTATCACGAAGCACCTTA+CGG 0.542642 2_4:-60320010 None:intergenic
CGAATCAAGATGTCTGGACG+TGG 0.544605 2_4:+60319945 None:intergenic
TGCGATGGTATTACTTATTG+GGG 0.547304 2_4:+60321217 Msa0339250:CDS
TTAAAGACCAATGCAGTAGT+GGG 0.551828 2_4:+60321248 Msa0339250:CDS
TTACTTACACAGAGCACGCT+AGG 0.553235 2_4:+60320165 Msa0339250:CDS
CGTCGTTTGGCACGTAGAGG+AGG 0.553789 2_4:+60320059 Msa0339250:CDS
GTGGCAGCTGAGCTTACAGA+TGG 0.555692 2_4:+60322043 Msa0339250:CDS
TCTCAACTTACAGAAAGAGT+AGG 0.556129 2_4:-60321310 None:intergenic
GGAAATTTACTCATCACTGT+CGG 0.559460 2_4:-60321917 None:intergenic
GGACGTGGAAAAGGTGGAAA+GGG 0.559725 2_4:+60319960 Msa0339250:CDS
TTCACCACGGAAAATCCCGC+TGG 0.562192 2_4:+60322190 Msa0339250:CDS
AGAGCAGAAGTGGGAGCGAA+GGG 0.564509 2_4:+60321971 Msa0339250:CDS
AGCTGAGCTTACAGATGGGT+TGG 0.566358 2_4:+60322048 Msa0339250:CDS
TTCTGGCACCAGAGTTGACA+AGG 0.570078 2_4:-60322147 None:intergenic
AGGAGCAAAACGACACCGTA+AGG 0.575994 2_4:+60319995 Msa0339250:CDS
AGAGTACCCCACTACTGCAT+TGG 0.576667 2_4:-60321255 None:intergenic
CGTGCCAAACGACGAATCGC+AGG 0.582056 2_4:-60320050 None:intergenic
GGAGAATGTTATTCGTGATG+CGG 0.582811 2_4:+60320142 Msa0339250:CDS
ATGTCTGGACGTGGAAAAGG+TGG 0.583297 2_4:+60319954 Msa0339250:CDS
CCAGCAAACTGGAAACCAGC+GGG 0.592210 2_4:-60322205 None:intergenic
TGGACGTGGAAAAGGTGGAA+AGG 0.597841 2_4:+60319959 Msa0339250:CDS
ACGATAAGAAAGGTTTGCGA+AGG 0.601081 2_4:-60321596 None:intergenic
AAGGACTCTTTATGGATTTG+GGG 0.603730 2_4:+60320238 Msa0339250:CDS
GCACACACATTATGTTGCCA+CGG 0.610699 2_4:+60322006 Msa0339250:CDS
AGTAAATTTCCAGCTCTCAA+CGG 0.614715 2_4:+60321929 Msa0339250:CDS
ATTCGTCGTTTGGCACGTAG+AGG 0.619364 2_4:+60320056 Msa0339250:CDS
GTGGATGCAGGATGTTGCGA+TGG 0.626932 2_4:+60321202 Msa0339250:intron
GTTTATGCATTGAAGAGACA+AGG 0.629886 2_4:+60320215 Msa0339250:CDS
GGAGGAGTGAAGCGTATAAG+CGG 0.630598 2_4:+60320077 Msa0339250:CDS
ATGCATTGAAGAGACAAGGA+AGG 0.634793 2_4:+60320219 Msa0339250:CDS
ACTCTTGGCTTGTGAAACAC+AGG 0.642689 2_4:+60321273 Msa0339250:CDS
AGGACTCTTTATGGATTTGG+GGG 0.645439 2_4:+60320239 Msa0339250:CDS
AAAATTGAATATGCTAACAG+AGG 0.648063 2_4:-60321542 None:intergenic
AAATTTACTCATCACTGTCG+GGG 0.668930 2_4:-60321915 None:intergenic
TCTATGGTTAGAGCAGAAGT+GGG 0.683139 2_4:+60321962 Msa0339250:CDS
GCCAGCAAACTGGAAACCAG+CGG 0.684986 2_4:-60322206 None:intergenic
TAAAGACCAATGCAGTAGTG+GGG 0.696035 2_4:+60321249 Msa0339250:CDS
CAACTCTGGTGCCAGAACAG+CGG 0.696690 2_4:+60322153 Msa0339250:CDS
TTGATCTACGAAGAGACACG+TGG 0.703849 2_4:+60320101 Msa0339250:CDS
TGGCAGCTGAGCTTACAGAT+GGG 0.738503 2_4:+60322044 Msa0339250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATTATAAGTGATTA+TGG + chr2_4:60320306-60320325 Msa0339250:intron 10.0%
!! TTATTATTATAAGTGATTAT+GGG + chr2_4:60320307-60320326 Msa0339250:intron 10.0%
!! TTTATTATTATAAGTGATTA+TGG + chr2_4:60320306-60320325 Msa0339250:intron 10.0%
!! TTATTATTATAAGTGATTAT+GGG + chr2_4:60320307-60320326 Msa0339250:intron 10.0%
!! AATTTAATATTGAATAATGC+TGG + chr2_4:60321108-60321127 Msa0339250:intron 15.0%
!! AATTTAATATTGAATAATGC+TGG + chr2_4:60321108-60321127 Msa0339250:intron 15.0%
!!! TTTTTTTAGGGTAAGAATTT+AGG + chr2_4:60320390-60320409 Msa0339250:intron 20.0%
!!! ATTCAATATCATTTTGTCTA+TGG + chr2_4:60320501-60320520 Msa0339250:intron 20.0%
!! AAATCTTAAAATTCAATTGC+AGG - chr2_4:60320563-60320582 None:intergenic 20.0%
!! AAAAATTGGAAATATTGCAT+TGG - chr2_4:60320839-60320858 None:intergenic 20.0%
!! TTTGAAAAAACTATTAAAGC+TGG + chr2_4:60322088-60322107 Msa0339250:CDS 20.0%
!!! TTTTTTTAGGGTAAGAATTT+AGG + chr2_4:60320390-60320409 Msa0339250:intron 20.0%
!!! ATTCAATATCATTTTGTCTA+TGG + chr2_4:60320501-60320520 Msa0339250:intron 20.0%
!! AAATCTTAAAATTCAATTGC+AGG - chr2_4:60320563-60320582 None:intergenic 20.0%
!! AAAAATTGGAAATATTGCAT+TGG - chr2_4:60320839-60320858 None:intergenic 20.0%
!! TTTGAAAAAACTATTAAAGC+TGG + chr2_4:60322088-60322107 Msa0339250:CDS 20.0%
! TATTATAAGTGATTATGGGT+TGG + chr2_4:60320311-60320330 Msa0339250:intron 25.0%
! ATTATAAGTGATTATGGGTT+GGG + chr2_4:60320312-60320331 Msa0339250:intron 25.0%
!!! AATTTAGGTGGTGTTTTTTT+AGG + chr2_4:60320377-60320396 Msa0339250:intron 25.0%
!!! ATTTAGGTGGTGTTTTTTTA+GGG + chr2_4:60320378-60320397 Msa0339250:intron 25.0%
!! GAGTAATTATCTTTTGTGAT+AGG + chr2_4:60320412-60320431 Msa0339250:intron 25.0%
!! ATTTTCAAAGTCGTTGTTAA+CGG + chr2_4:60320587-60320606 Msa0339250:intron 25.0%
! ACAATTTGATAGGCAATATT+AGG - chr2_4:60320649-60320668 None:intergenic 25.0%
! AATACTCACAACAATTTGAT+AGG - chr2_4:60320659-60320678 None:intergenic 25.0%
! AAACTAAAACCTAAAACATC+AGG - chr2_4:60320775-60320794 None:intergenic 25.0%
! TGCAGATTTCTTAGAAAAAT+TGG - chr2_4:60320853-60320872 None:intergenic 25.0%
! TTGTTCAGCTATAAATTTCA+CGG + chr2_4:60321519-60321538 Msa0339250:CDS 25.0%
! AAAATTGAATATGCTAACAG+AGG - chr2_4:60321545-60321564 None:intergenic 25.0%
! AATTGAATGTACGATAAGAA+AGG - chr2_4:60321609-60321628 None:intergenic 25.0%
! ATTTAACCATGCAACATTTA+TGG + chr2_4:60321638-60321657 Msa0339250:intron 25.0%
! TATTATAAGTGATTATGGGT+TGG + chr2_4:60320311-60320330 Msa0339250:intron 25.0%
! ATTATAAGTGATTATGGGTT+GGG + chr2_4:60320312-60320331 Msa0339250:intron 25.0%
!!! AATTTAGGTGGTGTTTTTTT+AGG + chr2_4:60320377-60320396 Msa0339250:intron 25.0%
!!! ATTTAGGTGGTGTTTTTTTA+GGG + chr2_4:60320378-60320397 Msa0339250:intron 25.0%
!! GAGTAATTATCTTTTGTGAT+AGG + chr2_4:60320412-60320431 Msa0339250:intron 25.0%
!! ATTTTCAAAGTCGTTGTTAA+CGG + chr2_4:60320587-60320606 Msa0339250:intron 25.0%
! ACAATTTGATAGGCAATATT+AGG - chr2_4:60320649-60320668 None:intergenic 25.0%
! AATACTCACAACAATTTGAT+AGG - chr2_4:60320659-60320678 None:intergenic 25.0%
! AAACTAAAACCTAAAACATC+AGG - chr2_4:60320775-60320794 None:intergenic 25.0%
! TGCAGATTTCTTAGAAAAAT+TGG - chr2_4:60320853-60320872 None:intergenic 25.0%
! TTGTTCAGCTATAAATTTCA+CGG + chr2_4:60321519-60321538 Msa0339250:CDS 25.0%
! AAAATTGAATATGCTAACAG+AGG - chr2_4:60321545-60321564 None:intergenic 25.0%
! AATTGAATGTACGATAAGAA+AGG - chr2_4:60321609-60321628 None:intergenic 25.0%
! ATTTAACCATGCAACATTTA+TGG + chr2_4:60321638-60321657 Msa0339250:intron 25.0%
ATAGGTAGTTAACTGTTTCA+TGG + chr2_4:60320430-60320449 Msa0339250:intron 30.0%
TTAAAATTCAATTGCAGGCT+TGG - chr2_4:60320558-60320577 None:intergenic 30.0%
TTCCATATATGACGAATTGA+GGG - chr2_4:60320706-60320725 None:intergenic 30.0%
ATTCCATATATGACGAATTG+AGG - chr2_4:60320707-60320726 None:intergenic 30.0%
CAGAGTTCAATACTAAAGAT+TGG - chr2_4:60320746-60320765 None:intergenic 30.0%
! ATTGGAAATATTGCATTGGT+TGG - chr2_4:60320835-60320854 None:intergenic 30.0%
CAAATACTATGTGATTGATG+AGG + chr2_4:60320889-60320908 Msa0339250:intron 30.0%
ATTGATGAGGATGTTATTGT+GGG + chr2_4:60320902-60320921 Msa0339250:intron 30.0%
TCACAACTGAAGATGTTTAA+AGG - chr2_4:60320930-60320949 None:intergenic 30.0%
! AGTTATGACCAACTAGATTT+TGG + chr2_4:60320955-60320974 Msa0339250:intron 30.0%
! GTTATGACCAACTAGATTTT+GGG + chr2_4:60320956-60320975 Msa0339250:intron 30.0%
AGATTTCTAAATTCTCCAGA+TGG - chr2_4:60321033-60321052 None:intergenic 30.0%
ATCTGGAGAATTTAGAAATC+TGG + chr2_4:60321032-60321051 Msa0339250:intron 30.0%
TCTGGAGAATTTAGAAATCT+GGG + chr2_4:60321033-60321052 Msa0339250:intron 30.0%
! TTAAGTTGTCTTCTTGAAGT+AGG + chr2_4:60321056-60321075 Msa0339250:intron 30.0%
! TGTTTGGAATTATGTCTTTG+TGG + chr2_4:60321183-60321202 Msa0339250:intron 30.0%
TTGCGATGGTATTACTTATT+GGG + chr2_4:60321216-60321235 Msa0339250:CDS 30.0%
! TTTCTGTAAGTTGAGAAAAG+TGG + chr2_4:60321317-60321336 Msa0339250:intron 30.0%
AAGTTGAGAAAAGTGGAATT+TGG + chr2_4:60321324-60321343 Msa0339250:intron 30.0%
! ACAAATTTTCTGTGTAAGAG+AGG - chr2_4:60321503-60321522 None:intergenic 30.0%
TGCATATCTTAATCTTCAAG+AGG - chr2_4:60321717-60321736 None:intergenic 30.0%
TTTACATGCATAACCAGAAA+GGG - chr2_4:60321803-60321822 None:intergenic 30.0%
AAGTGAAATCATTGACAATC+AGG - chr2_4:60321837-60321856 None:intergenic 30.0%
!!! GTCAATGATTTCACTTTTTC+TGG + chr2_4:60321841-60321860 Msa0339250:intron 30.0%
GACATTGTTGAATGATTCAA+TGG - chr2_4:60321888-60321907 None:intergenic 30.0%
GATGTTATTGTGTTTCCTAA+AGG + chr2_4:60322112-60322131 Msa0339250:CDS 30.0%
ATAGGTAGTTAACTGTTTCA+TGG + chr2_4:60320430-60320449 Msa0339250:intron 30.0%
TTAAAATTCAATTGCAGGCT+TGG - chr2_4:60320558-60320577 None:intergenic 30.0%
TTCCATATATGACGAATTGA+GGG - chr2_4:60320706-60320725 None:intergenic 30.0%
ATTCCATATATGACGAATTG+AGG - chr2_4:60320707-60320726 None:intergenic 30.0%
CAGAGTTCAATACTAAAGAT+TGG - chr2_4:60320746-60320765 None:intergenic 30.0%
! ATTGGAAATATTGCATTGGT+TGG - chr2_4:60320835-60320854 None:intergenic 30.0%
CAAATACTATGTGATTGATG+AGG + chr2_4:60320889-60320908 Msa0339250:intron 30.0%
ATTGATGAGGATGTTATTGT+GGG + chr2_4:60320902-60320921 Msa0339250:intron 30.0%
TCACAACTGAAGATGTTTAA+AGG - chr2_4:60320930-60320949 None:intergenic 30.0%
! AGTTATGACCAACTAGATTT+TGG + chr2_4:60320955-60320974 Msa0339250:intron 30.0%
! GTTATGACCAACTAGATTTT+GGG + chr2_4:60320956-60320975 Msa0339250:intron 30.0%
AGATTTCTAAATTCTCCAGA+TGG - chr2_4:60321033-60321052 None:intergenic 30.0%
ATCTGGAGAATTTAGAAATC+TGG + chr2_4:60321032-60321051 Msa0339250:intron 30.0%
TCTGGAGAATTTAGAAATCT+GGG + chr2_4:60321033-60321052 Msa0339250:intron 30.0%
! TTAAGTTGTCTTCTTGAAGT+AGG + chr2_4:60321056-60321075 Msa0339250:intron 30.0%
! TGTTTGGAATTATGTCTTTG+TGG + chr2_4:60321183-60321202 Msa0339250:intron 30.0%
TTGCGATGGTATTACTTATT+GGG + chr2_4:60321216-60321235 Msa0339250:CDS 30.0%
! TTTCTGTAAGTTGAGAAAAG+TGG + chr2_4:60321317-60321336 Msa0339250:intron 30.0%
AAGTTGAGAAAAGTGGAATT+TGG + chr2_4:60321324-60321343 Msa0339250:intron 30.0%
! ACAAATTTTCTGTGTAAGAG+AGG - chr2_4:60321503-60321522 None:intergenic 30.0%
TGCATATCTTAATCTTCAAG+AGG - chr2_4:60321717-60321736 None:intergenic 30.0%
TTTACATGCATAACCAGAAA+GGG - chr2_4:60321803-60321822 None:intergenic 30.0%
AAGTGAAATCATTGACAATC+AGG - chr2_4:60321837-60321856 None:intergenic 30.0%
!!! GTCAATGATTTCACTTTTTC+TGG + chr2_4:60321841-60321860 Msa0339250:intron 30.0%
GACATTGTTGAATGATTCAA+TGG - chr2_4:60321888-60321907 None:intergenic 30.0%
GATGTTATTGTGTTTCCTAA+AGG + chr2_4:60322112-60322131 Msa0339250:CDS 30.0%
GTTTATGCATTGAAGAGACA+AGG + chr2_4:60320215-60320234 Msa0339250:CDS 35.0%
GAAGGACTCTTTATGGATTT+GGG + chr2_4:60320237-60320256 Msa0339250:CDS 35.0%
AAGGACTCTTTATGGATTTG+GGG + chr2_4:60320238-60320257 Msa0339250:CDS 35.0%
!! GTCTTGCTGTCAAGAAATTT+TGG + chr2_4:60320339-60320358 Msa0339250:intron 35.0%
!! AGAAATTTTGGCAAGGTTTG+TGG + chr2_4:60320351-60320370 Msa0339250:intron 35.0%
CAAGGTTTGTGGTTGAATTT+AGG + chr2_4:60320362-60320381 Msa0339250:intron 35.0%
TTGATAGGCAATATTAGGCT+TGG - chr2_4:60320644-60320663 None:intergenic 35.0%
AACCCTCAATTCGTCATATA+TGG + chr2_4:60320701-60320720 Msa0339250:intron 35.0%
GATTGATGAGGATGTTATTG+TGG + chr2_4:60320901-60320920 Msa0339250:intron 35.0%
TCTCCAGATGGAAAAACATA+CGG - chr2_4:60321021-60321040 None:intergenic 35.0%
CTGCAGTAAATTGATCCAAT+GGG - chr2_4:60321142-60321161 None:intergenic 35.0%
ACATAATTCCAAACAGACAG+GGG - chr2_4:60321178-60321197 None:intergenic 35.0%
GACATAATTCCAAACAGACA+GGG - chr2_4:60321179-60321198 None:intergenic 35.0%
AGACATAATTCCAAACAGAC+AGG - chr2_4:60321180-60321199 None:intergenic 35.0%
AATTATGTCTTTGTGGATGC+AGG + chr2_4:60321190-60321209 Msa0339250:intron 35.0%
GTTGCGATGGTATTACTTAT+TGG + chr2_4:60321215-60321234 Msa0339250:CDS 35.0%
TGCGATGGTATTACTTATTG+GGG + chr2_4:60321217-60321236 Msa0339250:CDS 35.0%
TGGTATTACTTATTGGGGTA+TGG + chr2_4:60321222-60321241 Msa0339250:CDS 35.0%
ATTAAAGACCAATGCAGTAG+TGG + chr2_4:60321247-60321266 Msa0339250:CDS 35.0%
TTAAAGACCAATGCAGTAGT+GGG + chr2_4:60321248-60321267 Msa0339250:CDS 35.0%
TCTCAACTTACAGAAAGAGT+AGG - chr2_4:60321313-60321332 None:intergenic 35.0%
! AACGTGTGAGTTTTTCTACT+AGG + chr2_4:60321402-60321421 Msa0339250:intron 35.0%
AGAATATGATGAGGATACTG+AGG - chr2_4:60321475-60321494 None:intergenic 35.0%
AACCATGCAACATTTATGGA+AGG + chr2_4:60321642-60321661 Msa0339250:intron 35.0%
ATCCTTCCATAAATGTTGCA+TGG - chr2_4:60321647-60321666 None:intergenic 35.0%
GTTTACATGCATAACCAGAA+AGG - chr2_4:60321804-60321823 None:intergenic 35.0%
! TTGACAATCAGGTTTTCAGT+TGG - chr2_4:60321826-60321845 None:intergenic 35.0%
AAATTTACTCATCACTGTCG+GGG - chr2_4:60321918-60321937 None:intergenic 35.0%
GAAATTTACTCATCACTGTC+GGG - chr2_4:60321919-60321938 None:intergenic 35.0%
GGAAATTTACTCATCACTGT+CGG - chr2_4:60321920-60321939 None:intergenic 35.0%
AGTAAATTTCCAGCTCTCAA+CGG + chr2_4:60321929-60321948 Msa0339250:CDS 35.0%
GTTTATGCATTGAAGAGACA+AGG + chr2_4:60320215-60320234 Msa0339250:CDS 35.0%
GAAGGACTCTTTATGGATTT+GGG + chr2_4:60320237-60320256 Msa0339250:CDS 35.0%
AAGGACTCTTTATGGATTTG+GGG + chr2_4:60320238-60320257 Msa0339250:CDS 35.0%
!! GTCTTGCTGTCAAGAAATTT+TGG + chr2_4:60320339-60320358 Msa0339250:intron 35.0%
!! AGAAATTTTGGCAAGGTTTG+TGG + chr2_4:60320351-60320370 Msa0339250:intron 35.0%
CAAGGTTTGTGGTTGAATTT+AGG + chr2_4:60320362-60320381 Msa0339250:intron 35.0%
TTGATAGGCAATATTAGGCT+TGG - chr2_4:60320644-60320663 None:intergenic 35.0%
AACCCTCAATTCGTCATATA+TGG + chr2_4:60320701-60320720 Msa0339250:intron 35.0%
GATTGATGAGGATGTTATTG+TGG + chr2_4:60320901-60320920 Msa0339250:intron 35.0%
TCTCCAGATGGAAAAACATA+CGG - chr2_4:60321021-60321040 None:intergenic 35.0%
CTGCAGTAAATTGATCCAAT+GGG - chr2_4:60321142-60321161 None:intergenic 35.0%
ACATAATTCCAAACAGACAG+GGG - chr2_4:60321178-60321197 None:intergenic 35.0%
GACATAATTCCAAACAGACA+GGG - chr2_4:60321179-60321198 None:intergenic 35.0%
AGACATAATTCCAAACAGAC+AGG - chr2_4:60321180-60321199 None:intergenic 35.0%
AATTATGTCTTTGTGGATGC+AGG + chr2_4:60321190-60321209 Msa0339250:intron 35.0%
GTTGCGATGGTATTACTTAT+TGG + chr2_4:60321215-60321234 Msa0339250:CDS 35.0%
TGCGATGGTATTACTTATTG+GGG + chr2_4:60321217-60321236 Msa0339250:CDS 35.0%
TGGTATTACTTATTGGGGTA+TGG + chr2_4:60321222-60321241 Msa0339250:CDS 35.0%
ATTAAAGACCAATGCAGTAG+TGG + chr2_4:60321247-60321266 Msa0339250:CDS 35.0%
TTAAAGACCAATGCAGTAGT+GGG + chr2_4:60321248-60321267 Msa0339250:CDS 35.0%
TCTCAACTTACAGAAAGAGT+AGG - chr2_4:60321313-60321332 None:intergenic 35.0%
! AACGTGTGAGTTTTTCTACT+AGG + chr2_4:60321402-60321421 Msa0339250:intron 35.0%
AGAATATGATGAGGATACTG+AGG - chr2_4:60321475-60321494 None:intergenic 35.0%
AACCATGCAACATTTATGGA+AGG + chr2_4:60321642-60321661 Msa0339250:intron 35.0%
ATCCTTCCATAAATGTTGCA+TGG - chr2_4:60321647-60321666 None:intergenic 35.0%
GTTTACATGCATAACCAGAA+AGG - chr2_4:60321804-60321823 None:intergenic 35.0%
! TTGACAATCAGGTTTTCAGT+TGG - chr2_4:60321826-60321845 None:intergenic 35.0%
AAATTTACTCATCACTGTCG+GGG - chr2_4:60321918-60321937 None:intergenic 35.0%
GAAATTTACTCATCACTGTC+GGG - chr2_4:60321919-60321938 None:intergenic 35.0%
GGAAATTTACTCATCACTGT+CGG - chr2_4:60321920-60321939 None:intergenic 35.0%
AGTAAATTTCCAGCTCTCAA+CGG + chr2_4:60321929-60321948 Msa0339250:CDS 35.0%
! TGTTATCACGAAGCACCTTA+CGG - chr2_4:60320013-60320032 None:intergenic 40.0%
GTGCTTCGTGATAACATTCA+AGG + chr2_4:60320017-60320036 Msa0339250:CDS 40.0%
! TGGCGTGTTGAAGATCTTTT+TGG + chr2_4:60320121-60320140 Msa0339250:CDS 40.0%
GGAGAATGTTATTCGTGATG+CGG + chr2_4:60320142-60320161 Msa0339250:CDS 40.0%
GAGAAAGACTGTTACTGCTA+TGG + chr2_4:60320187-60320206 Msa0339250:CDS 40.0%
ATGCATTGAAGAGACAAGGA+AGG + chr2_4:60320219-60320238 Msa0339250:CDS 40.0%
AGACAAGGAAGGACTCTTTA+TGG + chr2_4:60320230-60320249 Msa0339250:CDS 40.0%
GGAAGGACTCTTTATGGATT+TGG + chr2_4:60320236-60320255 Msa0339250:CDS 40.0%
AGGACTCTTTATGGATTTGG+GGG + chr2_4:60320239-60320258 Msa0339250:CDS 40.0%
TCTTTATGGATTTGGGGGTT+AGG + chr2_4:60320244-60320263 Msa0339250:intron 40.0%
CTTTATGGATTTGGGGGTTA+GGG + chr2_4:60320245-60320264 Msa0339250:intron 40.0%
!! GCTGTCAAGAAATTTTGGCA+AGG + chr2_4:60320344-60320363 Msa0339250:intron 40.0%
GGTTTGTGGTTGAATTTAGG+TGG + chr2_4:60320365-60320384 Msa0339250:intron 40.0%
! CTGTCAACTCCTGATGTTTT+AGG + chr2_4:60320763-60320782 Msa0339250:intron 40.0%
!! AAGAGCACCCAAAATCTAGT+TGG - chr2_4:60320966-60320985 None:intergenic 40.0%
! ATCCCGTATGTTTTTCCATC+TGG + chr2_4:60321015-60321034 Msa0339250:intron 40.0%
CTCCAGATGGAAAAACATAC+GGG - chr2_4:60321020-60321039 None:intergenic 40.0%
AGTTGTCTTCTTGAAGTAGG+TGG + chr2_4:60321059-60321078 Msa0339250:intron 40.0%
ATGCTGGAAAACTATCCCAT+TGG + chr2_4:60321124-60321143 Msa0339250:intron 40.0%
GCTGCAGTAAATTGATCCAA+TGG - chr2_4:60321143-60321162 None:intergenic 40.0%
TAAAGACCAATGCAGTAGTG+GGG + chr2_4:60321249-60321268 Msa0339250:CDS 40.0%
! ATTTTCTGTGTAAGAGAGGC+AGG - chr2_4:60321499-60321518 None:intergenic 40.0%
! TTTGCGAAGGTTGATCGAAT+AGG - chr2_4:60321586-60321605 None:intergenic 40.0%
ACGATAAGAAAGGTTTGCGA+AGG - chr2_4:60321599-60321618 None:intergenic 40.0%
CATAACCAGAAAGGGATTCT+GGG - chr2_4:60321795-60321814 None:intergenic 40.0%
TCTATGGTTAGAGCAGAAGT+GGG + chr2_4:60321962-60321981 Msa0339250:CDS 40.0%
! TGCCACGGAATTTTTGATCA+TGG + chr2_4:60322021-60322040 Msa0339250:CDS 40.0%
CACCATGATCAAAAATTCCG+TGG - chr2_4:60322026-60322045 None:intergenic 40.0%
! CACGGAATTTTTGATCATGG+TGG + chr2_4:60322024-60322043 Msa0339250:CDS 40.0%
!!! TGCTTTTTCAGCTTTCACCA+CGG + chr2_4:60322177-60322196 Msa0339250:CDS 40.0%
! TTGAGTAACAGTGGAGTGTT+TGG - chr2_4:60322236-60322255 None:intergenic 40.0%
!! AGCTGTCTTTTGAGTAACAG+TGG - chr2_4:60322245-60322264 None:intergenic 40.0%
! TGTTATCACGAAGCACCTTA+CGG - chr2_4:60320013-60320032 None:intergenic 40.0%
GTGCTTCGTGATAACATTCA+AGG + chr2_4:60320017-60320036 Msa0339250:CDS 40.0%
! TGGCGTGTTGAAGATCTTTT+TGG + chr2_4:60320121-60320140 Msa0339250:CDS 40.0%
GGAGAATGTTATTCGTGATG+CGG + chr2_4:60320142-60320161 Msa0339250:CDS 40.0%
GAGAAAGACTGTTACTGCTA+TGG + chr2_4:60320187-60320206 Msa0339250:CDS 40.0%
ATGCATTGAAGAGACAAGGA+AGG + chr2_4:60320219-60320238 Msa0339250:CDS 40.0%
AGACAAGGAAGGACTCTTTA+TGG + chr2_4:60320230-60320249 Msa0339250:CDS 40.0%
GGAAGGACTCTTTATGGATT+TGG + chr2_4:60320236-60320255 Msa0339250:CDS 40.0%
AGGACTCTTTATGGATTTGG+GGG + chr2_4:60320239-60320258 Msa0339250:CDS 40.0%
TCTTTATGGATTTGGGGGTT+AGG + chr2_4:60320244-60320263 Msa0339250:intron 40.0%
CTTTATGGATTTGGGGGTTA+GGG + chr2_4:60320245-60320264 Msa0339250:intron 40.0%
!! GCTGTCAAGAAATTTTGGCA+AGG + chr2_4:60320344-60320363 Msa0339250:intron 40.0%
GGTTTGTGGTTGAATTTAGG+TGG + chr2_4:60320365-60320384 Msa0339250:intron 40.0%
! CTGTCAACTCCTGATGTTTT+AGG + chr2_4:60320763-60320782 Msa0339250:intron 40.0%
!! AAGAGCACCCAAAATCTAGT+TGG - chr2_4:60320966-60320985 None:intergenic 40.0%
! ATCCCGTATGTTTTTCCATC+TGG + chr2_4:60321015-60321034 Msa0339250:intron 40.0%
CTCCAGATGGAAAAACATAC+GGG - chr2_4:60321020-60321039 None:intergenic 40.0%
AGTTGTCTTCTTGAAGTAGG+TGG + chr2_4:60321059-60321078 Msa0339250:intron 40.0%
ATGCTGGAAAACTATCCCAT+TGG + chr2_4:60321124-60321143 Msa0339250:intron 40.0%
GCTGCAGTAAATTGATCCAA+TGG - chr2_4:60321143-60321162 None:intergenic 40.0%
TAAAGACCAATGCAGTAGTG+GGG + chr2_4:60321249-60321268 Msa0339250:CDS 40.0%
! ATTTTCTGTGTAAGAGAGGC+AGG - chr2_4:60321499-60321518 None:intergenic 40.0%
! TTTGCGAAGGTTGATCGAAT+AGG - chr2_4:60321586-60321605 None:intergenic 40.0%
ACGATAAGAAAGGTTTGCGA+AGG - chr2_4:60321599-60321618 None:intergenic 40.0%
CATAACCAGAAAGGGATTCT+GGG - chr2_4:60321795-60321814 None:intergenic 40.0%
TCTATGGTTAGAGCAGAAGT+GGG + chr2_4:60321962-60321981 Msa0339250:CDS 40.0%
! TGCCACGGAATTTTTGATCA+TGG + chr2_4:60322021-60322040 Msa0339250:CDS 40.0%
CACCATGATCAAAAATTCCG+TGG - chr2_4:60322026-60322045 None:intergenic 40.0%
! CACGGAATTTTTGATCATGG+TGG + chr2_4:60322024-60322043 Msa0339250:CDS 40.0%
!!! TGCTTTTTCAGCTTTCACCA+CGG + chr2_4:60322177-60322196 Msa0339250:CDS 40.0%
! TTGAGTAACAGTGGAGTGTT+TGG - chr2_4:60322236-60322255 None:intergenic 40.0%
!! AGCTGTCTTTTGAGTAACAG+TGG - chr2_4:60322245-60322264 None:intergenic 40.0%
TGGAAAAGGTGGAAAGGGAT+TGG + chr2_4:60319965-60319984 Msa0339250:CDS 45.0%
GGAAAAGGTGGAAAGGGATT+GGG + chr2_4:60319966-60319985 Msa0339250:CDS 45.0%
TTGATCTACGAAGAGACACG+TGG + chr2_4:60320101-60320120 Msa0339250:CDS 45.0%
TTACTTACACAGAGCACGCT+AGG + chr2_4:60320165-60320184 Msa0339250:CDS 45.0%
GTCGTTGTTAACGGTTTCTC+TGG + chr2_4:60320596-60320615 Msa0339250:intron 45.0%
!! ACTCTTGGCTTGTGAAACAC+AGG + chr2_4:60321273-60321292 Msa0339250:CDS 45.0%
GGAATTTGGAGAAATGCTGC+AGG + chr2_4:60321338-60321357 Msa0339250:intron 45.0%
!! TTCTGGGACTGTAACAGTGT+TGG - chr2_4:60321779-60321798 None:intergenic 45.0%
GCATAACCAGAAAGGGATTC+TGG - chr2_4:60321796-60321815 None:intergenic 45.0%
!! CAACGGCATTGGTATCTCTA+TGG + chr2_4:60321946-60321965 Msa0339250:CDS 45.0%
CTCTATGGTTAGAGCAGAAG+TGG + chr2_4:60321961-60321980 Msa0339250:CDS 45.0%
GCACACACATTATGTTGCCA+CGG + chr2_4:60322006-60322025 Msa0339250:CDS 45.0%
AGGAAATGCACGCATCCTTT+AGG - chr2_4:60322130-60322149 None:intergenic 45.0%
GTGCATTTCCTTGTCAACTC+TGG + chr2_4:60322139-60322158 Msa0339250:CDS 45.0%
TGAAAAAGCAACCGCTGTTC+TGG - chr2_4:60322167-60322186 None:intergenic 45.0%
TGGAAAAGGTGGAAAGGGAT+TGG + chr2_4:60319965-60319984 Msa0339250:CDS 45.0%
GGAAAAGGTGGAAAGGGATT+GGG + chr2_4:60319966-60319985 Msa0339250:CDS 45.0%
TTGATCTACGAAGAGACACG+TGG + chr2_4:60320101-60320120 Msa0339250:CDS 45.0%
TTACTTACACAGAGCACGCT+AGG + chr2_4:60320165-60320184 Msa0339250:CDS 45.0%
GTCGTTGTTAACGGTTTCTC+TGG + chr2_4:60320596-60320615 Msa0339250:intron 45.0%
!! ACTCTTGGCTTGTGAAACAC+AGG + chr2_4:60321273-60321292 Msa0339250:CDS 45.0%
GGAATTTGGAGAAATGCTGC+AGG + chr2_4:60321338-60321357 Msa0339250:intron 45.0%
!! TTCTGGGACTGTAACAGTGT+TGG - chr2_4:60321779-60321798 None:intergenic 45.0%
GCATAACCAGAAAGGGATTC+TGG - chr2_4:60321796-60321815 None:intergenic 45.0%
!! CAACGGCATTGGTATCTCTA+TGG + chr2_4:60321946-60321965 Msa0339250:CDS 45.0%
CTCTATGGTTAGAGCAGAAG+TGG + chr2_4:60321961-60321980 Msa0339250:CDS 45.0%
GCACACACATTATGTTGCCA+CGG + chr2_4:60322006-60322025 Msa0339250:CDS 45.0%
AGGAAATGCACGCATCCTTT+AGG - chr2_4:60322130-60322149 None:intergenic 45.0%
GTGCATTTCCTTGTCAACTC+TGG + chr2_4:60322139-60322158 Msa0339250:CDS 45.0%
TGAAAAAGCAACCGCTGTTC+TGG - chr2_4:60322167-60322186 None:intergenic 45.0%
ATGTCTGGACGTGGAAAAGG+TGG + chr2_4:60319954-60319973 Msa0339250:CDS 50.0%
TGGACGTGGAAAAGGTGGAA+AGG + chr2_4:60319959-60319978 Msa0339250:CDS 50.0%
GGACGTGGAAAAGGTGGAAA+GGG + chr2_4:60319960-60319979 Msa0339250:CDS 50.0%
AGGTGGAAAGGGATTGGGAA+AGG + chr2_4:60319971-60319990 Msa0339250:CDS 50.0%
GGTGGAAAGGGATTGGGAAA+GGG + chr2_4:60319972-60319991 Msa0339250:CDS 50.0%
AGGAGCAAAACGACACCGTA+AGG + chr2_4:60319995-60320014 Msa0339250:CDS 50.0%
ATTCGTCGTTTGGCACGTAG+AGG + chr2_4:60320056-60320075 Msa0339250:CDS 50.0%
GGAGGAGTGAAGCGTATAAG+CGG + chr2_4:60320077-60320096 Msa0339250:CDS 50.0%
TCCAGAAACCCCTGTCTGTT+TGG + chr2_4:60321167-60321186 Msa0339250:intron 50.0%
TCCAAACAGACAGGGGTTTC+TGG - chr2_4:60321171-60321190 None:intergenic 50.0%
! AGAGTACCCCACTACTGCAT+TGG - chr2_4:60321258-60321277 None:intergenic 50.0%
! ATGCAGTAGTGGGGTACTCT+TGG + chr2_4:60321258-60321277 Msa0339250:CDS 50.0%
GAGGCAGGCAGAATATGATG+AGG - chr2_4:60321484-60321503 None:intergenic 50.0%
ACAGTCCCAGAATCCCTTTC+TGG + chr2_4:60321787-60321806 Msa0339250:intron 50.0%
TTTCCAGCTCTCAACGGCAT+TGG + chr2_4:60321935-60321954 Msa0339250:CDS 50.0%
ATACCAATGCCGTTGAGAGC+TGG - chr2_4:60321941-60321960 None:intergenic 50.0%
TGGCAGCTGAGCTTACAGAT+GGG + chr2_4:60322044-60322063 Msa0339250:CDS 50.0%
AGCTGAGCTTACAGATGGGT+TGG + chr2_4:60322048-60322067 Msa0339250:CDS 50.0%
TTCTGGCACCAGAGTTGACA+AGG - chr2_4:60322150-60322169 None:intergenic 50.0%
!! GTTTGGTGTTGCCAGCAAAC+TGG - chr2_4:60322219-60322238 None:intergenic 50.0%
ATGTCTGGACGTGGAAAAGG+TGG + chr2_4:60319954-60319973 Msa0339250:CDS 50.0%
TGGACGTGGAAAAGGTGGAA+AGG + chr2_4:60319959-60319978 Msa0339250:CDS 50.0%
GGACGTGGAAAAGGTGGAAA+GGG + chr2_4:60319960-60319979 Msa0339250:CDS 50.0%
AGGTGGAAAGGGATTGGGAA+AGG + chr2_4:60319971-60319990 Msa0339250:CDS 50.0%
GGTGGAAAGGGATTGGGAAA+GGG + chr2_4:60319972-60319991 Msa0339250:CDS 50.0%
AGGAGCAAAACGACACCGTA+AGG + chr2_4:60319995-60320014 Msa0339250:CDS 50.0%
ATTCGTCGTTTGGCACGTAG+AGG + chr2_4:60320056-60320075 Msa0339250:CDS 50.0%
GGAGGAGTGAAGCGTATAAG+CGG + chr2_4:60320077-60320096 Msa0339250:CDS 50.0%
TCCAGAAACCCCTGTCTGTT+TGG + chr2_4:60321167-60321186 Msa0339250:intron 50.0%
TCCAAACAGACAGGGGTTTC+TGG - chr2_4:60321171-60321190 None:intergenic 50.0%
! AGAGTACCCCACTACTGCAT+TGG - chr2_4:60321258-60321277 None:intergenic 50.0%
! ATGCAGTAGTGGGGTACTCT+TGG + chr2_4:60321258-60321277 Msa0339250:CDS 50.0%
GAGGCAGGCAGAATATGATG+AGG - chr2_4:60321484-60321503 None:intergenic 50.0%
ACAGTCCCAGAATCCCTTTC+TGG + chr2_4:60321787-60321806 Msa0339250:intron 50.0%
TTTCCAGCTCTCAACGGCAT+TGG + chr2_4:60321935-60321954 Msa0339250:CDS 50.0%
ATACCAATGCCGTTGAGAGC+TGG - chr2_4:60321941-60321960 None:intergenic 50.0%
TGGCAGCTGAGCTTACAGAT+GGG + chr2_4:60322044-60322063 Msa0339250:CDS 50.0%
AGCTGAGCTTACAGATGGGT+TGG + chr2_4:60322048-60322067 Msa0339250:CDS 50.0%
TTCTGGCACCAGAGTTGACA+AGG - chr2_4:60322150-60322169 None:intergenic 50.0%
!! GTTTGGTGTTGCCAGCAAAC+TGG - chr2_4:60322219-60322238 None:intergenic 50.0%
GGAAAGGGATTGGGAAAGGG+AGG + chr2_4:60319975-60319994 Msa0339250:CDS 55.0%
GAAGCCTGCGATTCGTCGTT+TGG + chr2_4:60320046-60320065 Msa0339250:CDS 55.0%
GTGGATGCAGGATGTTGCGA+TGG + chr2_4:60321202-60321221 Msa0339250:intron 55.0%
TAGAGCAGAAGTGGGAGCGA+AGG + chr2_4:60321970-60321989 Msa0339250:CDS 55.0%
AGAGCAGAAGTGGGAGCGAA+GGG + chr2_4:60321971-60321990 Msa0339250:CDS 55.0%
GTGGCAGCTGAGCTTACAGA+TGG + chr2_4:60322043-60322062 Msa0339250:CDS 55.0%
! CAACTCTGGTGCCAGAACAG+CGG + chr2_4:60322153-60322172 Msa0339250:CDS 55.0%
TTCACCACGGAAAATCCCGC+TGG + chr2_4:60322190-60322209 Msa0339250:CDS 55.0%
! GAAACCAGCGGGATTTTCCG+TGG - chr2_4:60322197-60322216 None:intergenic 55.0%
CCAGCAAACTGGAAACCAGC+GGG - chr2_4:60322208-60322227 None:intergenic 55.0%
GCCAGCAAACTGGAAACCAG+CGG - chr2_4:60322209-60322228 None:intergenic 55.0%
GGAAAGGGATTGGGAAAGGG+AGG + chr2_4:60319975-60319994 Msa0339250:CDS 55.0%
GAAGCCTGCGATTCGTCGTT+TGG + chr2_4:60320046-60320065 Msa0339250:CDS 55.0%
GTGGATGCAGGATGTTGCGA+TGG + chr2_4:60321202-60321221 Msa0339250:intron 55.0%
TAGAGCAGAAGTGGGAGCGA+AGG + chr2_4:60321970-60321989 Msa0339250:CDS 55.0%
AGAGCAGAAGTGGGAGCGAA+GGG + chr2_4:60321971-60321990 Msa0339250:CDS 55.0%
GTGGCAGCTGAGCTTACAGA+TGG + chr2_4:60322043-60322062 Msa0339250:CDS 55.0%
! CAACTCTGGTGCCAGAACAG+CGG + chr2_4:60322153-60322172 Msa0339250:CDS 55.0%
TTCACCACGGAAAATCCCGC+TGG + chr2_4:60322190-60322209 Msa0339250:CDS 55.0%
! GAAACCAGCGGGATTTTCCG+TGG - chr2_4:60322197-60322216 None:intergenic 55.0%
CCAGCAAACTGGAAACCAGC+GGG - chr2_4:60322208-60322227 None:intergenic 55.0%
GCCAGCAAACTGGAAACCAG+CGG - chr2_4:60322209-60322228 None:intergenic 55.0%
CGTGCCAAACGACGAATCGC+AGG - chr2_4:60320053-60320072 None:intergenic 60.0%
CGTCGTTTGGCACGTAGAGG+AGG + chr2_4:60320059-60320078 Msa0339250:CDS 60.0%
!! CCCGCTGGTTTCCAGTTTGC+TGG + chr2_4:60322205-60322224 Msa0339250:CDS 60.0%
CGTGCCAAACGACGAATCGC+AGG - chr2_4:60320053-60320072 None:intergenic 60.0%
CGTCGTTTGGCACGTAGAGG+AGG + chr2_4:60320059-60320078 Msa0339250:CDS 60.0%
!! CCCGCTGGTTTCCAGTTTGC+TGG + chr2_4:60322205-60322224 Msa0339250:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 60319954 60322282 60319954 ID=Msa0339250;Name=Msa0339250
chr2_4 mRNA 60319954 60322282 60319954 ID=Msa0339250-mRNA-1;Parent=Msa0339250;Name=Msa0339250-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.5|1|1|4|0|314
chr2_4 exon 60319954 60320260 60319954 ID=Msa0339250-mRNA-1:exon:18749;Parent=Msa0339250-mRNA-1
chr2_4 exon 60321212 60321321 60321212 ID=Msa0339250-mRNA-1:exon:18750;Parent=Msa0339250-mRNA-1
chr2_4 exon 60321514 60321629 60321514 ID=Msa0339250-mRNA-1:exon:18751;Parent=Msa0339250-mRNA-1
chr2_4 exon 60321871 60322282 60321871 ID=Msa0339250-mRNA-1:exon:18752;Parent=Msa0339250-mRNA-1
chr2_4 CDS 60319954 60320260 60319954 ID=Msa0339250-mRNA-1:cds;Parent=Msa0339250-mRNA-1
chr2_4 CDS 60321212 60321321 60321212 ID=Msa0339250-mRNA-1:cds;Parent=Msa0339250-mRNA-1
chr2_4 CDS 60321514 60321629 60321514 ID=Msa0339250-mRNA-1:cds;Parent=Msa0339250-mRNA-1
chr2_4 CDS 60321871 60322282 60321871 ID=Msa0339250-mRNA-1:cds;Parent=Msa0339250-mRNA-1
Gene Sequence

>Msa0339250

ATGTCTGGACGTGGAAAAGGTGGAAAGGGATTGGGAAAGGGAGGAGCAAAACGACACCGTAAGGTGCTTCGTGATAACATTCAAGGAATAACGAAGCCTGCGATTCGTCGTTTGGCACGTAGAGGAGGAGTGAAGCGTATAAGCGGTTTGATCTACGAAGAGACACGTGGCGTGTTGAAGATCTTTTTGGAGAATGTTATTCGTGATGCGGTTACTTACACAGAGCACGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCATTGAAGAGACAAGGAAGGACTCTTTATGGATTTGGGGGATGTTGCGATGGTATTACTTATTGGGGTATGGTCATTAAAGACCAATGCAGTAGTGGGGTACTCTTGGCTTGTGAAACACAGGAAATTTGTGTTGATCCTACTCTTTCTAAAATTTGTTCAGCTATAAATTTCACGGCCTCTGTTAGCATATTCAATTTTGTCAATAACAAAAATATTCCTATTCGATCAACCTTCGCAAACCTTTCTTATCGTACATTCAATTTTCTAAGAAAGCAAACCATTGAATCATTCAACAATGTCAAGCTTACCCCGACAGTGATGAGTAAATTTCCAGCTCTCAACGGCATTGGTATCTCTATGGTTAGAGCAGAAGTGGGAGCGAAGGGAAGCTACTCTATGCACACACATTATGTTGCCACGGAATTTTTGATCATGGTGGCAGCTGAGCTTACAGATGGGTTGGTGATAGATGAAGAAGTGTTTGAAAAAACTATTAAAGCTGGAGATGTTATTGTGTTTCCTAAAGGATGCGTGCATTTCCTTGTCAACTCTGGTGCCAGAACAGCGGTTGCTTTTTCAGCTTTCACCACGGAAAATCCCGCTGGTTTCCAGTTTGCTGGCAACACCAAACACTCCACTGTTACTCAAAAGACAGCTCTTCTTGATTTTGAATAA

Protein sequence

>Msa0339250

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGCCDGITYWGMVIKDQCSSGVLLACETQEICVDPTLSKICSAINFTASVSIFNFVNNKNIPIRSTFANLSYRTFNFLRKQTIESFNNVKLTPTVMSKFPALNGIGISMVRAEVGAKGSYSMHTHYVATEFLIMVAAELTDGLVIDEEVFEKTIKAGDVIVFPKGCVHFLVNSGARTAVAFSAFTTENPAGFQFAGNTKHSTVTQKTALLDFE*