AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0220720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220720 MtrunA17_Chr1g0198561 88.435 294 21 1 1 281 1 294 0.0 532
Msa0220720 MtrunA17_Chr6g0450631 87.755 294 23 1 1 281 1 294 0.0 531
Msa0220720 MtrunA17_Chr2g0324401 98.113 106 2 0 176 281 1 106 2.26e-72 217
Msa0220720 MtrunA17_Chr3g0145851 40.097 207 105 7 49 238 58 262 4.17e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220720 AT3G17465.1 62.037 324 80 5 1 281 1 324 1.59e-133 381
Msa0220720 AT2G43030.1 41.520 171 97 3 70 238 92 261 1.84e-32 120

Find 97 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTCTTAACTTATTA+TGG 0.156094 2_1:+69111771 None:intergenic
TGGGGATGTGGATCCATTTA+TGG 0.158517 2_1:-69112189 Msa0220720:CDS
TGACTGCACTTTGGGATAAA+TGG 0.171985 2_1:-69114395 Msa0220720:CDS
TGTAGTATCTTAACAAATTT+TGG 0.194392 2_1:-69111908 Msa0220720:intron
TAAAGAGATAGTTCAGAAAA+TGG 0.216730 2_1:-69112158 Msa0220720:three_prime_UTR
CTTTAATCAGTAACCATAAA+TGG 0.233502 2_1:+69112176 None:intergenic
CCTTCACTGGTTAACTTCTA+AGG 0.234383 2_1:-69112027 Msa0220720:three_prime_UTR
GAGTTCCAATTTCTATCCTT+TGG 0.251026 2_1:-69114365 Msa0220720:CDS
AGTTCCAATTTCTATCCTTT+GGG 0.317691 2_1:-69114364 Msa0220720:CDS
CATAGAACCATGGGTTCTTC+AGG 0.322897 2_1:-69113184 Msa0220720:CDS
CTCCTGAAGCTTCCTCTTCA+TGG 0.339965 2_1:+69114067 None:intergenic
TCAACCCAAAGGATAGAAAT+TGG 0.341302 2_1:+69114360 None:intergenic
ACCCACATCAAATTTCTTGC+TGG 0.343726 2_1:+69112900 None:intergenic
TCATCTGTATCTTCATCTTC+TGG 0.348247 2_1:+69112236 None:intergenic
AAACCTCTGGTTGCTGATCT+TGG 0.349915 2_1:-69112209 Msa0220720:CDS
ATATCACATATCTTAACCTT+TGG 0.359418 2_1:+69111827 None:intergenic
CATACTGTCCGGGAACAAAA+TGG 0.364379 2_1:+69113991 None:intergenic
AACCTCTGGTTGCTGATCTT+GGG 0.368580 2_1:-69112208 Msa0220720:CDS
ACACCAGTTCGTTGTGAATT+CGG 0.370596 2_1:+69114438 None:intergenic
GCCCTAAAATGACCCACTTC+AGG 0.379527 2_1:+69114101 None:intergenic
GATTGGTTGTGGACAGAAGA+AGG 0.380825 2_1:-69114141 Msa0220720:CDS
CTTCTGTTTACAGGGTGTAA+TGG 0.384171 2_1:-69113257 Msa0220720:intron
CAAATAAATTAGCTTCAAAA+AGG 0.385273 2_1:+69111946 None:intergenic
AAAGAGATAGTTCAGAAAAT+GGG 0.389407 2_1:-69112157 Msa0220720:three_prime_UTR
AGGAATGCTTGGTCCTTGTA+AGG 0.397571 2_1:-69113164 Msa0220720:intron
TCCCATGAAGAGGAAGCTTC+AGG 0.402123 2_1:-69114069 Msa0220720:CDS
ATGTGGAATGACTGCACTTT+GGG 0.405645 2_1:-69114403 Msa0220720:CDS
ATGCAGGTCCCAGGAGCTAC+AGG 0.423543 2_1:-69112335 Msa0220720:intron
GACTGCACTTTGGGATAAAT+GGG 0.426337 2_1:-69114394 Msa0220720:CDS
ACAAAGTTCCCTGTAGCTCC+TGG 0.431609 2_1:+69112326 None:intergenic
AACCGCGGCAGTGGCACCAC+AGG 0.433121 2_1:+69114519 None:intergenic
TCTTCTGGCACAAAGTAAGT+TGG 0.439664 2_1:+69112251 None:intergenic
GTTCGGAGGTGGAGACTATA+CGG 0.442293 2_1:-69114491 Msa0220720:CDS
GGTTGCTGATCTTGGGGATG+TGG 0.454818 2_1:-69112201 Msa0220720:CDS
AATGGACCGGTATGATTTCA+AGG 0.462175 2_1:-69113239 Msa0220720:CDS
TGATGACAACATTGTCTCTC+AGG 0.468175 2_1:-69114340 Msa0220720:intron
GTTACTTTGAGACTTGGAAT+TGG 0.474197 2_1:-69112002 Msa0220720:three_prime_UTR
AGAAATTTGATGTGGGTGAA+AGG 0.489286 2_1:-69112894 Msa0220720:CDS
CTTCTGGCACAAAGTAAGTT+GGG 0.491443 2_1:+69112252 None:intergenic
ACCTCTGGTTGCTGATCTTG+GGG 0.494514 2_1:-69112207 Msa0220720:CDS
ACACCGAATTCACAACGAAC+TGG 0.499424 2_1:-69114441 Msa0220720:CDS
ACAGGAATCACTAAAGGAAA+AGG 0.499985 2_1:-69113960 Msa0220720:CDS
AAGGTTGTTACTTTGAGACT+TGG 0.502193 2_1:-69112008 Msa0220720:three_prime_UTR
GGACTCCATCCAACCTTACA+AGG 0.504118 2_1:+69113151 None:intergenic
TTCTTAACTTATTATGGACA+TGG 0.506757 2_1:+69111777 None:intergenic
ATGGGTTCTTCAGGAATGCT+TGG 0.507345 2_1:-69113175 Msa0220720:CDS
ACATTAAGCGATGTACCAAC+AGG 0.508189 2_1:+69114017 None:intergenic
GAGGCGTGGTTTCTCGTCTA+CGG 0.509855 2_1:-69114548 Msa0220720:CDS
TGTGATGTCAACATACTGTC+CGG 0.509894 2_1:+69113980 None:intergenic
TATGTGCTTTCGAATTCCCA+TGG 0.513084 2_1:+69113203 None:intergenic
TCCTGAAGCTTCCTCTTCAT+GGG 0.524646 2_1:+69114068 None:intergenic
TGCTTCCCACCCATTCTCCC+CGG 0.526048 2_1:+69112960 None:intergenic
TTTGATGTGGGTGAAAGGCC+AGG 0.528326 2_1:-69112889 Msa0220720:intron
AAAATGCCGGGGAGAATGGG+TGG 0.532086 2_1:-69112966 Msa0220720:CDS
TCTTAACTTATTATGGACAT+GGG 0.538489 2_1:+69111778 None:intergenic
AATGTGGAATGACTGCACTT+TGG 0.543439 2_1:-69114404 Msa0220720:CDS
AAAGGAAGTATAGATGTCTC+AGG 0.543480 2_1:+69112275 None:intergenic
TACAGATGATATGAAACCTC+TGG 0.545460 2_1:-69112222 Msa0220720:CDS
GACATCACAGGAATCACTAA+AGG 0.546953 2_1:-69113966 Msa0220720:CDS
GAGGATGCACTTCTTCCTGT+TGG 0.552055 2_1:-69114032 Msa0220720:CDS
CTCAAGGAGTTCCCATGAAG+AGG 0.552464 2_1:-69114079 Msa0220720:CDS
GTTTACAGGGTGTAATGGAC+CGG 0.553779 2_1:-69113252 Msa0220720:intron
CAAAGTTCCCTGTAGCTCCT+GGG 0.553971 2_1:+69112327 None:intergenic
GAATTCGGTGTCATCACACT+AGG 0.557489 2_1:+69114453 None:intergenic
AAGGGAGGTTCAGCATCCCA+TGG 0.557581 2_1:-69113220 Msa0220720:CDS
ATGTGCACTATGCAGGTCCC+AGG 0.560952 2_1:-69112344 Msa0220720:intron
TCCCTGTGGTGCCACTGCCG+CGG 0.562920 2_1:-69114521 Msa0220720:CDS
TGAAGCTAATTTATTTGGCA+CGG 0.569690 2_1:-69111940 Msa0220720:three_prime_UTR
ATGTGCTTTCGAATTCCCAT+GGG 0.571228 2_1:+69113204 None:intergenic
ACACTCGACAAAGCCTGAAG+TGG 0.575978 2_1:-69114114 Msa0220720:CDS
CCTTAGAAGTTAACCAGTGA+AGG 0.578996 2_1:+69112027 None:intergenic
TGAGAGGAATAGATTTCCAA+AGG 0.582356 2_1:-69111843 Msa0220720:three_prime_UTR
CACTCGACAAAGCCTGAAGT+GGG 0.584112 2_1:-69114113 Msa0220720:CDS
AACCTCCCTTGAAATCATAC+CGG 0.585348 2_1:+69113233 None:intergenic
TCAGGAGTTTCGAGTGACAG+AGG 0.587986 2_1:-69114051 Msa0220720:CDS
GTGATGTCAACATACTGTCC+GGG 0.588163 2_1:+69113981 None:intergenic
TGTTAAGATACTACACTGCA+AGG 0.596592 2_1:+69111916 None:intergenic
GATGGGGAAAATGAGTATTG+AGG 0.597201 2_1:-69112084 Msa0220720:three_prime_UTR
GGCACAAAGTAAGTTGGGAA+AGG 0.599353 2_1:+69112257 None:intergenic
GACCGGTATGATTTCAAGGG+AGG 0.601360 2_1:-69113235 Msa0220720:CDS
TCGAAAGCACATAGAACCAT+GGG 0.605881 2_1:-69113193 Msa0220720:CDS
GGACAGTATGTTGACATCAC+AGG 0.614169 2_1:-69113978 Msa0220720:CDS
AAATGCCGGGGAGAATGGGT+GGG 0.614539 2_1:-69112965 Msa0220720:CDS
AGGGAGGTTCAGCATCCCAT+GGG 0.616692 2_1:-69113219 Msa0220720:CDS
ATCCAGCAAGAAATTTGATG+TGG 0.622717 2_1:-69112902 Msa0220720:CDS
TTCGAAAGCACATAGAACCA+TGG 0.623227 2_1:-69113194 Msa0220720:CDS
AAGCATTCCTGAAGAACCCA+TGG 0.626684 2_1:+69113177 None:intergenic
ACCGCGGCAGTGGCACCACA+GGG 0.627605 2_1:+69114520 None:intergenic
TGCAGGTCCCAGGAGCTACA+GGG 0.631734 2_1:-69112334 Msa0220720:intron
ATGGACCGGTATGATTTCAA+GGG 0.635642 2_1:-69113238 Msa0220720:CDS
GGTGTTATAGCTGTAAAATG+TGG 0.647527 2_1:-69114420 Msa0220720:CDS
CAATGTTGTCATCAACCCAA+AGG 0.648583 2_1:+69114349 None:intergenic
TCGTCTACGGCAATTCCCTG+TGG 0.657376 2_1:-69114535 Msa0220720:CDS
TCCAGCAAGAAATTTGATGT+GGG 0.677547 2_1:-69112901 Msa0220720:CDS
TCCCCAAGATCAGCAACCAG+AGG 0.694021 2_1:+69112206 None:intergenic
CGGAGGTGGAGACTATACGG+AGG 0.753244 2_1:-69114488 Msa0220720:CDS
ACTGCACTTTGGGATAAATG+GGG 0.757943 2_1:-69114393 Msa0220720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAATTTATATTTAT+AGG - chr2_1:69112559-69112578 Msa0220720:intron 0.0%
!! ATATTAAAATAGATACAAAA+TGG + chr2_1:69113878-69113897 None:intergenic 10.0%
!! GTTTATAATGAATTATTAAG+CGG - chr2_1:69112081-69112100 Msa0220720:three_prime_UTR 15.0%
!! AAGAAAAAATACTAATCTAA+AGG + chr2_1:69113197-69113216 None:intergenic 15.0%
!! AAATATATTATCACAACTAT+AGG + chr2_1:69113308-69113327 None:intergenic 15.0%
!!! TTCTTTTATTTGAATATAGA+TGG - chr2_1:69114222-69114241 Msa0220720:intron 15.0%
!!! TCTTTTATTTGAATATAGAT+GGG - chr2_1:69114223-69114242 Msa0220720:intron 15.0%
!!! ACATGTTTGATATTTTGTTT+TGG - chr2_1:69112157-69112176 Msa0220720:three_prime_UTR 20.0%
!!! ATATTTTGTTTTGGTTAGAT+TGG - chr2_1:69112166-69112185 Msa0220720:exon 20.0%
!! ACAATTGAACAAATAAATAG+TGG + chr2_1:69112716-69112735 None:intergenic 20.0%
!!! TTTCCGATTTATTTACTTTT+GGG - chr2_1:69112740-69112759 Msa0220720:intron 20.0%
!!! TTTTAAAGGTAAAAAAATGC+CGG - chr2_1:69113345-69113364 Msa0220720:intron 20.0%
!! AAAGAACAGTAAAAAATGTA+TGG - chr2_1:69113386-69113405 Msa0220720:intron 20.0%
!! AAGAACAGTAAAAAATGTAT+GGG - chr2_1:69113387-69113406 Msa0220720:intron 20.0%
!! AAATCGTATATAAAATTACC+TGG + chr2_1:69113456-69113475 None:intergenic 20.0%
!! ATTTATAAAATTGCAGCTAT+AGG - chr2_1:69113472-69113491 Msa0220720:intron 20.0%
!! AGGTAAATAAAATTTGAATG+AGG + chr2_1:69113630-69113649 None:intergenic 20.0%
!!! ATTCAAATTTTATTTACCTC+TGG - chr2_1:69113631-69113650 Msa0220720:intron 20.0%
!!! CTATCTTAGTTGATATTTTT+TGG + chr2_1:69113709-69113728 None:intergenic 20.0%
!! AAAATATCAACTAAGATAGT+TGG - chr2_1:69113710-69113729 Msa0220720:intron 20.0%
!!! CTTTTATTTGAATATAGATG+GGG - chr2_1:69114224-69114243 Msa0220720:intron 20.0%
!!! CAAATAAATTAGCTTCAAAA+AGG + chr2_1:69114381-69114400 None:intergenic 20.0%
!!! CTTTTTGAAGCTAATTTATT+TGG - chr2_1:69114379-69114398 Msa0220720:CDS 20.0%
!!! TGTAGTATCTTAACAAATTT+TGG - chr2_1:69114416-69114435 Msa0220720:CDS 20.0%
!! TTCAACTTCTTAACTTATTA+TGG + chr2_1:69114556-69114575 None:intergenic 20.0%
! GAACTTAAAAATATACACGA+GGG + chr2_1:69112118-69112137 None:intergenic 25.0%
! TGAACTTAAAAATATACACG+AGG + chr2_1:69112119-69112138 None:intergenic 25.0%
!! ATGAGAAGTATATAGTATGA+GGG + chr2_1:69112411-69112430 None:intergenic 25.0%
!! AATGAGAAGTATATAGTATG+AGG + chr2_1:69112412-69112431 None:intergenic 25.0%
!! GTTTCCGATTTATTTACTTT+TGG - chr2_1:69112739-69112758 Msa0220720:intron 25.0%
! TTATAATCCATGTATGACTT+CGG - chr2_1:69112930-69112949 Msa0220720:CDS 25.0%
! TCAAATTATCTTCTGTTTAC+AGG - chr2_1:69113058-69113077 Msa0220720:intron 25.0%
! CAAATTATCTTCTGTTTACA+GGG - chr2_1:69113059-69113078 Msa0220720:intron 25.0%
! TTTAAAGGTAAAAAAATGCC+GGG - chr2_1:69113346-69113365 Msa0220720:intron 25.0%
! GCCACTTATTTATTAATAAC+TGG - chr2_1:69113898-69113917 Msa0220720:intron 25.0%
! GCCAGTTATTAATAAATAAG+TGG + chr2_1:69113902-69113921 None:intergenic 25.0%
! TAATAACTGGCCAAAATATT+TGG - chr2_1:69113911-69113930 Msa0220720:intron 25.0%
! CTTTAATCAGTAACCATAAA+TGG + chr2_1:69114151-69114170 None:intergenic 25.0%
! TAAAGAGATAGTTCAGAAAA+TGG - chr2_1:69114166-69114185 Msa0220720:intron 25.0%
! AAAGAGATAGTTCAGAAAAT+GGG - chr2_1:69114167-69114186 Msa0220720:intron 25.0%
!!! TCAGATTGTGATAGTTTTAA+AGG - chr2_1:69114452-69114471 Msa0220720:CDS 25.0%
! ATATCACATATCTTAACCTT+TGG + chr2_1:69114500-69114519 None:intergenic 25.0%
! TCTTAACTTATTATGGACAT+GGG + chr2_1:69114549-69114568 None:intergenic 25.0%
! TTCTTAACTTATTATGGACA+TGG + chr2_1:69114550-69114569 None:intergenic 25.0%
AGTTCCAATTTCTATCCTTT+GGG - chr2_1:69111960-69111979 Msa0220720:three_prime_UTR 30.0%
ATCCCAATTATGTAATCAAC+TGG + chr2_1:69112628-69112647 None:intergenic 30.0%
TCGCCCAAAAGTAAATAAAT+CGG + chr2_1:69112746-69112765 None:intergenic 30.0%
! CATTTTGTCGTTCAAATTTC+AGG + chr2_1:69112850-69112869 None:intergenic 30.0%
!!! TGTTGATTTTCATGCTTTCT+AGG - chr2_1:69112868-69112887 Msa0220720:intron 30.0%
!! GTTGATTTTCATGCTTTCTA+GGG - chr2_1:69112869-69112888 Msa0220720:intron 30.0%
! TTGATTTTCATGCTTTCTAG+GGG - chr2_1:69112870-69112889 Msa0220720:intron 30.0%
AGGACATAGATCTGTAAAAA+TGG + chr2_1:69113017-69113036 None:intergenic 30.0%
TTAACAGTCATGTAACTGAA+AGG + chr2_1:69113037-69113056 None:intergenic 30.0%
! TATATTTTTCCTCACTGTTC+AGG - chr2_1:69113321-69113340 Msa0220720:intron 30.0%
TTAAAGGTAAAAAAATGCCG+GGG - chr2_1:69113347-69113366 Msa0220720:intron 30.0%
!!! AGTTTTTTTTTTTTCCCCGA+GGG + chr2_1:69113517-69113536 None:intergenic 30.0%
! AAGTATCCGAGTTTAAAACA+TGG - chr2_1:69113586-69113605 Msa0220720:intron 30.0%
!! TTTGAGCCATGTTTTAAACT+CGG + chr2_1:69113595-69113614 None:intergenic 30.0%
ATTTGAATGAGGATTGTTTC+AGG + chr2_1:69113619-69113638 None:intergenic 30.0%
!!! ATTTTTTGGTCTTAAACCTC+CGG + chr2_1:69113695-69113714 None:intergenic 30.0%
TACTGCAATGTGAATTAAGT+GGG + chr2_1:69113770-69113789 None:intergenic 30.0%
CGATATCATTAAGAAAACGA+TGG - chr2_1:69113841-69113860 Msa0220720:intron 30.0%
! AGCCAACATTCCAAATATTT+TGG + chr2_1:69113924-69113943 None:intergenic 30.0%
!!! AGAAAATGGGTTTTTTCGTT+AGG - chr2_1:69114180-69114199 Msa0220720:intron 30.0%
AAAAAATCATCCTTGGATTG+TGG + chr2_1:69114268-69114287 None:intergenic 30.0%
TCAAGTGAAAAAATCATCCT+TGG + chr2_1:69114275-69114294 None:intergenic 30.0%
TGAAGCTAATTTATTTGGCA+CGG - chr2_1:69114384-69114403 Msa0220720:CDS 30.0%
! GGTGTTATAGCTGTAAAATG+TGG - chr2_1:69111904-69111923 Msa0220720:intron 35.0%
GAGTTCCAATTTCTATCCTT+TGG - chr2_1:69111959-69111978 Msa0220720:three_prime_UTR 35.0%
TCAACCCAAAGGATAGAAAT+TGG + chr2_1:69111967-69111986 None:intergenic 35.0%
ATTTGATCGAGAGAACGAAA+TGG + chr2_1:69112055-69112074 None:intergenic 35.0%
!!! TGTTTTGGTTAGATTGGTTG+TGG - chr2_1:69112172-69112191 Msa0220720:exon 35.0%
ACAGGAATCACTAAAGGAAA+AGG - chr2_1:69112364-69112383 Msa0220720:intron 35.0%
! CACTAAAGGAAAAGGTTTTC+AGG - chr2_1:69112372-69112391 Msa0220720:intron 35.0%
TTAAAACGAATTACCCCAAG+AGG - chr2_1:69112583-69112602 Msa0220720:intron 35.0%
ACGAAAAAAGCTATCCTCTT+GGG + chr2_1:69112600-69112619 None:intergenic 35.0%
TACGAAAAAAGCTATCCTCT+TGG + chr2_1:69112601-69112620 None:intergenic 35.0%
!!! AGAGGATAGCTTTTTTCGTA+AGG - chr2_1:69112601-69112620 Msa0220720:intron 35.0%
!!! GAGGATAGCTTTTTTCGTAA+GGG - chr2_1:69112602-69112621 Msa0220720:intron 35.0%
GGCCAGTTGATTACATAATT+GGG - chr2_1:69112623-69112642 Msa0220720:intron 35.0%
TTCAGTAGTTTCAACTGATC+AGG - chr2_1:69112775-69112794 Msa0220720:intron 35.0%
GGGAGGAGATAAAAGAATAA+CGG + chr2_1:69112811-69112830 None:intergenic 35.0%
TTGTCGTTCAAATTTCAGGA+GGG + chr2_1:69112846-69112865 None:intergenic 35.0%
TTTGTCGTTCAAATTTCAGG+AGG + chr2_1:69112847-69112866 None:intergenic 35.0%
! TGATTTTCATGCTTTCTAGG+GGG - chr2_1:69112871-69112890 Msa0220720:intron 35.0%
ATTTACTCGATGGAAGGTTT+CGG + chr2_1:69112974-69112993 None:intergenic 35.0%
AAACCTTCCATCGAGTAAAT+CGG - chr2_1:69112974-69112993 Msa0220720:CDS 35.0%
! CTTTAAAAACCTGAACAGTG+AGG + chr2_1:69113333-69113352 None:intergenic 35.0%
!! CTCACTGTTCAGGTTTTTAA+AGG - chr2_1:69113331-69113350 Msa0220720:intron 35.0%
ATCCAGCAAGAAATTTGATG+TGG - chr2_1:69113422-69113441 Msa0220720:intron 35.0%
TCCAGCAAGAAATTTGATGT+GGG - chr2_1:69113423-69113442 Msa0220720:intron 35.0%
AGAAATTTGATGTGGGTGAA+AGG - chr2_1:69113430-69113449 Msa0220720:intron 35.0%
TAAAATTGCAGCTATAGGAC+AGG - chr2_1:69113477-69113496 Msa0220720:intron 35.0%
!!! GTTTTTTTTTTTTCCCCGAG+GGG + chr2_1:69113516-69113535 None:intergenic 35.0%
!!! CAGTTTTTTTTTTTTCCCCG+AGG + chr2_1:69113518-69113537 None:intergenic 35.0%
! AAAAACTGATTCAACTCGAG+TGG - chr2_1:69113530-69113549 Msa0220720:intron 35.0%
GTACTGCAATGTGAATTAAG+TGG + chr2_1:69113771-69113790 None:intergenic 35.0%
! GGCCAAAATATTTGGAATGT+TGG - chr2_1:69113919-69113938 Msa0220720:intron 35.0%
!! TTTGGAATGTTGGCTTTATG+CGG - chr2_1:69113929-69113948 Msa0220720:intron 35.0%
! AAAGGAAGTATAGATGTCTC+AGG + chr2_1:69114052-69114071 None:intergenic 35.0%
TCATCTGTATCTTCATCTTC+TGG + chr2_1:69114091-69114110 None:intergenic 35.0%
TACAGATGATATGAAACCTC+TGG - chr2_1:69114102-69114121 Msa0220720:CDS 35.0%
!! AAGGTTGTTACTTTGAGACT+TGG - chr2_1:69114316-69114335 Msa0220720:intron 35.0%
!! GTTACTTTGAGACTTGGAAT+TGG - chr2_1:69114322-69114341 Msa0220720:intron 35.0%
TGTTAAGATACTACACTGCA+AGG + chr2_1:69114411-69114430 None:intergenic 35.0%
!!! GTTTTAAAGGACTACTTGAG+AGG - chr2_1:69114465-69114484 Msa0220720:CDS 35.0%
TGAGAGGAATAGATTTCCAA+AGG - chr2_1:69114481-69114500 Msa0220720:CDS 35.0%
ACACCAGTTCGTTGTGAATT+CGG + chr2_1:69111889-69111908 None:intergenic 40.0%
AATGTGGAATGACTGCACTT+TGG - chr2_1:69111920-69111939 Msa0220720:three_prime_UTR 40.0%
ATGTGGAATGACTGCACTTT+GGG - chr2_1:69111921-69111940 Msa0220720:three_prime_UTR 40.0%
!! TGACTGCACTTTGGGATAAA+TGG - chr2_1:69111929-69111948 Msa0220720:three_prime_UTR 40.0%
!! GACTGCACTTTGGGATAAAT+GGG - chr2_1:69111930-69111949 Msa0220720:three_prime_UTR 40.0%
!! ACTGCACTTTGGGATAAATG+GGG - chr2_1:69111931-69111950 Msa0220720:three_prime_UTR 40.0%
CAATGTTGTCATCAACCCAA+AGG + chr2_1:69111978-69111997 None:intergenic 40.0%
TGATGACAACATTGTCTCTC+AGG - chr2_1:69111984-69112003 Msa0220720:three_prime_UTR 40.0%
ACATTAAGCGATGTACCAAC+AGG + chr2_1:69112310-69112329 None:intergenic 40.0%
!! AATGTTCGCCATTTTGTTCC+CGG - chr2_1:69112325-69112344 Msa0220720:CDS 40.0%
TGTGATGTCAACATACTGTC+CGG + chr2_1:69112347-69112366 None:intergenic 40.0%
GACATCACAGGAATCACTAA+AGG - chr2_1:69112358-69112377 Msa0220720:intron 40.0%
CGAAAAAAGCTATCCTCTTG+GGG + chr2_1:69112599-69112618 None:intergenic 40.0%
GGGCCAGTTGATTACATAAT+TGG - chr2_1:69112622-69112641 Msa0220720:intron 40.0%
TGTTTCGATCCACATCCAAT+TGG - chr2_1:69112654-69112673 Msa0220720:intron 40.0%
TATTACTGTTGCCGACCAAT+TGG + chr2_1:69112672-69112691 None:intergenic 40.0%
AATTGGTCGGCAACAGTAAT+AGG - chr2_1:69112671-69112690 Msa0220720:intron 40.0%
TCAGGAGGGGTCAAATAAAA+CGG + chr2_1:69112832-69112851 None:intergenic 40.0%
TGTCGTTCAAATTTCAGGAG+GGG + chr2_1:69112845-69112864 None:intergenic 40.0%
! GAAGTATCCGAAGTCATACA+TGG + chr2_1:69112940-69112959 None:intergenic 40.0%
AACCTTCCATCGAGTAAATC+GGG - chr2_1:69112975-69112994 Msa0220720:CDS 40.0%
TAATTGCCCGATTTACTCGA+TGG + chr2_1:69112984-69113003 None:intergenic 40.0%
CTTCTGTTTACAGGGTGTAA+TGG - chr2_1:69113067-69113086 Msa0220720:intron 40.0%
AATGGACCGGTATGATTTCA+AGG - chr2_1:69113085-69113104 Msa0220720:intron 40.0%
ATGGACCGGTATGATTTCAA+GGG - chr2_1:69113086-69113105 Msa0220720:intron 40.0%
AACCTCCCTTGAAATCATAC+CGG + chr2_1:69113094-69113113 None:intergenic 40.0%
ATGTGCTTTCGAATTCCCAT+GGG + chr2_1:69113123-69113142 None:intergenic 40.0%
TATGTGCTTTCGAATTCCCA+TGG + chr2_1:69113124-69113143 None:intergenic 40.0%
! TTCGAAAGCACATAGAACCA+TGG - chr2_1:69113130-69113149 Msa0220720:intron 40.0%
! TCGAAAGCACATAGAACCAT+GGG - chr2_1:69113131-69113150 Msa0220720:intron 40.0%
TAAAAAAATGCCGGGGAGAA+TGG - chr2_1:69113354-69113373 Msa0220720:intron 40.0%
AAAAAAATGCCGGGGAGAAT+GGG - chr2_1:69113355-69113374 Msa0220720:intron 40.0%
ACCCACATCAAATTTCTTGC+TGG + chr2_1:69113427-69113446 None:intergenic 40.0%
! GGAACTATTTTGTATCCCCT+CGG - chr2_1:69113498-69113517 Msa0220720:intron 40.0%
! GAACTATTTTGTATCCCCTC+GGG - chr2_1:69113499-69113518 Msa0220720:intron 40.0%
! AACTATTTTGTATCCCCTCG+GGG - chr2_1:69113500-69113519 Msa0220720:intron 40.0%
TGGCTGAACTGTAGATTACT+AGG - chr2_1:69113651-69113670 Msa0220720:intron 40.0%
GGCTGAACTGTAGATTACTA+GGG - chr2_1:69113652-69113671 Msa0220720:intron 40.0%
!! TTGGAATGTTGGCTTTATGC+GGG - chr2_1:69113930-69113949 Msa0220720:intron 40.0%
TTGTATGATGTGCACTATGC+AGG - chr2_1:69113973-69113992 Msa0220720:CDS 40.0%
CTTCTGGCACAAAGTAAGTT+GGG + chr2_1:69114075-69114094 None:intergenic 40.0%
TCTTCTGGCACAAAGTAAGT+TGG + chr2_1:69114076-69114095 None:intergenic 40.0%
! GATGGGGAAAATGAGTATTG+AGG - chr2_1:69114240-69114259 Msa0220720:intron 40.0%
! TATTGAGGTACCACAATCCA+AGG - chr2_1:69114255-69114274 Msa0220720:intron 40.0%
! TTTTCACTTGAGTCCTTCAC+TGG - chr2_1:69114284-69114303 Msa0220720:intron 40.0%
CCTTAGAAGTTAACCAGTGA+AGG + chr2_1:69114300-69114319 None:intergenic 40.0%
! CCTTCACTGGTTAACTTCTA+AGG - chr2_1:69114297-69114316 Msa0220720:intron 40.0%
!! GAATTCGGTGTCATCACACT+AGG + chr2_1:69111874-69111893 None:intergenic 45.0%
ACACCGAATTCACAACGAAC+TGG - chr2_1:69111883-69111902 Msa0220720:intron 45.0%
TCAGGTCAAAACTCCTGAGA+AGG - chr2_1:69112002-69112021 Msa0220720:three_prime_UTR 45.0%
GTCAAAACTCCTGAGAAGGA+AGG - chr2_1:69112006-69112025 Msa0220720:three_prime_UTR 45.0%
GAACAATAGCCTTCCTTCTC+AGG + chr2_1:69112018-69112037 None:intergenic 45.0%
! GATTGGTTGTGGACAGAAGA+AGG - chr2_1:69112183-69112202 Msa0220720:CDS 45.0%
!! AGCCTGAAGTGGGTCATTTT+AGG - chr2_1:69112221-69112240 Msa0220720:CDS 45.0%
!! GCCTGAAGTGGGTCATTTTA+GGG - chr2_1:69112222-69112241 Msa0220720:CDS 45.0%
TCCTGAAGCTTCCTCTTCAT+GGG + chr2_1:69112259-69112278 None:intergenic 45.0%
CATACTGTCCGGGAACAAAA+TGG + chr2_1:69112336-69112355 None:intergenic 45.0%
GTGATGTCAACATACTGTCC+GGG + chr2_1:69112346-69112365 None:intergenic 45.0%
GGACAGTATGTTGACATCAC+AGG - chr2_1:69112346-69112365 Msa0220720:intron 45.0%
TCGATCCACATCCAATTGGT+CGG - chr2_1:69112658-69112677 Msa0220720:intron 45.0%
CAGGAGGGGTCAAATAAAAC+GGG + chr2_1:69112831-69112850 None:intergenic 45.0%
!! GTTTACAGGGTGTAATGGAC+CGG - chr2_1:69113072-69113091 Msa0220720:intron 45.0%
CATAGAACCATGGGTTCTTC+AGG - chr2_1:69113140-69113159 Msa0220720:intron 45.0%
AAGCATTCCTGAAGAACCCA+TGG + chr2_1:69113150-69113169 None:intergenic 45.0%
ATGGGTTCTTCAGGAATGCT+TGG - chr2_1:69113149-69113168 Msa0220720:intron 45.0%
AGGAATGCTTGGTCCTTGTA+AGG - chr2_1:69113160-69113179 Msa0220720:intron 45.0%
ATGCTTGGTCCTTGTAAGGT+TGG - chr2_1:69113164-69113183 Msa0220720:intron 45.0%
TTGGTCCTTGTAAGGTTGGA+TGG - chr2_1:69113168-69113187 Msa0220720:CDS 45.0%
GTAATCTACAGTTCAGCCAG+AGG + chr2_1:69113650-69113669 None:intergenic 45.0%
! GGCACAAAGTAAGTTGGGAA+AGG + chr2_1:69114070-69114089 None:intergenic 45.0%
AAACCTCTGGTTGCTGATCT+TGG - chr2_1:69114115-69114134 Msa0220720:CDS 45.0%
AACCTCTGGTTGCTGATCTT+GGG - chr2_1:69114116-69114135 Msa0220720:CDS 45.0%
TGGGGATGTGGATCCATTTA+TGG - chr2_1:69114135-69114154 Msa0220720:CDS 45.0%
!! TATTATTTATAAAGAAAAAA+AGG + chr2_1:69112435-69112454 None:intergenic 5.0%
!! ATAAAAAATTAAAATCATTA+TGG + chr2_1:69113736-69113755 None:intergenic 5.0%
!!! ACTGCCGCGGTTTTTGAGTT+CGG - chr2_1:69111816-69111835 Msa0220720:three_prime_UTR 50.0%
ACCTCCGAACTCAAAAACCG+CGG + chr2_1:69111823-69111842 None:intergenic 50.0%
GTTCGGAGGTGGAGACTATA+CGG - chr2_1:69111833-69111852 Msa0220720:three_prime_UTR 50.0%
GGAAGGCTATTGTTCTCTCC+AGG - chr2_1:69112023-69112042 Msa0220720:three_prime_UTR 50.0%
AGAACGAAATGGAACGCACC+TGG + chr2_1:69112044-69112063 None:intergenic 50.0%
ACACTCGACAAAGCCTGAAG+TGG - chr2_1:69112210-69112229 Msa0220720:CDS 50.0%
CACTCGACAAAGCCTGAAGT+GGG - chr2_1:69112211-69112230 Msa0220720:CDS 50.0%
GCCCTAAAATGACCCACTTC+AGG + chr2_1:69112226-69112245 None:intergenic 50.0%
!!! GTGGGTCATTTTAGGGCTCA+AGG - chr2_1:69112229-69112248 Msa0220720:CDS 50.0%
CTCAAGGAGTTCCCATGAAG+AGG - chr2_1:69112245-69112264 Msa0220720:CDS 50.0%
TCCCATGAAGAGGAAGCTTC+AGG - chr2_1:69112255-69112274 Msa0220720:CDS 50.0%
CTCCTGAAGCTTCCTCTTCA+TGG + chr2_1:69112260-69112279 None:intergenic 50.0%
! TCAGGAGTTTCGAGTGACAG+AGG - chr2_1:69112273-69112292 Msa0220720:CDS 50.0%
GAGGATGCACTTCTTCCTGT+TGG - chr2_1:69112292-69112311 Msa0220720:CDS 50.0%
TGTTGCCGACCAATTGGATG+TGG + chr2_1:69112666-69112685 None:intergenic 50.0%
GAGGGGTCAAATAAAACGGG+AGG + chr2_1:69112828-69112847 None:intergenic 50.0%
TGCCCGATTTACTCGATGGA+AGG + chr2_1:69112980-69112999 None:intergenic 50.0%
GACCGGTATGATTTCAAGGG+AGG - chr2_1:69113089-69113108 Msa0220720:intron 50.0%
GGACTCCATCCAACCTTACA+AGG + chr2_1:69113176-69113195 None:intergenic 50.0%
TTTGATGTGGGTGAAAGGCC+AGG - chr2_1:69113435-69113454 Msa0220720:intron 50.0%
TACTAGGGTTCCTTCCCTCA+CGG - chr2_1:69113667-69113686 Msa0220720:intron 50.0%
TTAAACCTCCGGTTCCGTGA+GGG + chr2_1:69113684-69113703 None:intergenic 50.0%
CAAAGTTCCCTGTAGCTCCT+GGG + chr2_1:69114000-69114019 None:intergenic 50.0%
ACAAAGTTCCCTGTAGCTCC+TGG + chr2_1:69114001-69114020 None:intergenic 50.0%
ACCTCTGGTTGCTGATCTTG+GGG - chr2_1:69114117-69114136 Msa0220720:CDS 50.0%
GAGGCGTGGTTTCTCGTCTA+CGG - chr2_1:69111776-69111795 Msa0220720:three_prime_UTR 55.0%
TCGTCTACGGCAATTCCCTG+TGG - chr2_1:69111789-69111808 Msa0220720:three_prime_UTR 55.0%
GAACTCAAAAACCGCGGCAG+TGG + chr2_1:69111817-69111836 None:intergenic 55.0%
!!! GCGGTTTTTGAGTTCGGAGG+TGG - chr2_1:69111822-69111841 Msa0220720:three_prime_UTR 55.0%
AAGGGAGGTTCAGCATCCCA+TGG - chr2_1:69113104-69113123 Msa0220720:intron 55.0%
AGGGAGGTTCAGCATCCCAT+GGG - chr2_1:69113105-69113124 Msa0220720:intron 55.0%
AAAATGCCGGGGAGAATGGG+TGG - chr2_1:69113358-69113377 Msa0220720:intron 55.0%
AAATGCCGGGGAGAATGGGT+GGG - chr2_1:69113359-69113378 Msa0220720:intron 55.0%
CTTAAACCTCCGGTTCCGTG+AGG + chr2_1:69113685-69113704 None:intergenic 55.0%
ATGTGCACTATGCAGGTCCC+AGG - chr2_1:69113980-69113999 Msa0220720:CDS 55.0%
TCCCCAAGATCAGCAACCAG+AGG + chr2_1:69114121-69114140 None:intergenic 55.0%
GGTTGCTGATCTTGGGGATG+TGG - chr2_1:69114123-69114142 Msa0220720:CDS 55.0%
!! GCTAGCGTTTTCGAGAGGCG+TGG - chr2_1:69111762-69111781 Msa0220720:three_prime_UTR 60.0%
!!! GCCGCGGTTTTTGAGTTCGG+AGG - chr2_1:69111819-69111838 Msa0220720:three_prime_UTR 60.0%
CGGAGGTGGAGACTATACGG+AGG - chr2_1:69111836-69111855 Msa0220720:three_prime_UTR 60.0%
TGCTTCCCACCCATTCTCCC+CGG + chr2_1:69113367-69113386 None:intergenic 60.0%
GGTTCCTTCCCTCACGGAAC+CGG - chr2_1:69113673-69113692 Msa0220720:intron 60.0%
ATGCAGGTCCCAGGAGCTAC+AGG - chr2_1:69113989-69114008 Msa0220720:CDS 60.0%
TGCAGGTCCCAGGAGCTACA+GGG - chr2_1:69113990-69114009 Msa0220720:CDS 60.0%
TCCTTCCCTCACGGAACCGG+AGG - chr2_1:69113676-69113695 Msa0220720:intron 65.0%
ACCTCCGGTTCCGTGAGGGA+AGG + chr2_1:69113680-69113699 None:intergenic 65.0%
!! TCCCTGTGGTGCCACTGCCG+CGG - chr2_1:69111803-69111822 Msa0220720:three_prime_UTR 70.0%
ACCGCGGCAGTGGCACCACA+GGG + chr2_1:69111807-69111826 None:intergenic 70.0%
AACCGCGGCAGTGGCACCAC+AGG + chr2_1:69111808-69111827 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 69111760 69114586 69111760 ID=Msa0220720;Name=Msa0220720
chr2_1 mRNA 69111760 69114586 69111760 ID=Msa0220720-mRNA-1;Parent=Msa0220720;Name=Msa0220720-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.83|0.85|1|0.66|0.57|7|360|281
chr2_1 exon 69111760 69111872 69111760 ID=Msa0220720-mRNA-1:exon:19583;Parent=Msa0220720-mRNA-1
chr2_1 exon 69111909 69112052 69111909 ID=Msa0220720-mRNA-1:exon:19582;Parent=Msa0220720-mRNA-1
chr2_1 exon 69112075 69112351 69112075 ID=Msa0220720-mRNA-1:exon:19581;Parent=Msa0220720-mRNA-1
chr2_1 exon 69112890 69113003 69112890 ID=Msa0220720-mRNA-1:exon:19580;Parent=Msa0220720-mRNA-1
chr2_1 exon 69113165 69113266 69113165 ID=Msa0220720-mRNA-1:exon:19579;Parent=Msa0220720-mRNA-1
chr2_1 exon 69113953 69114162 69113953 ID=Msa0220720-mRNA-1:exon:19578;Parent=Msa0220720-mRNA-1
chr2_1 exon 69114341 69114586 69114341 ID=Msa0220720-mRNA-1:exon:19577;Parent=Msa0220720-mRNA-1
chr2_1 CDS 69114341 69114586 69114341 ID=Msa0220720-mRNA-1:cds;Parent=Msa0220720-mRNA-1
chr2_1 CDS 69113953 69114162 69113953 ID=Msa0220720-mRNA-1:cds;Parent=Msa0220720-mRNA-1
chr2_1 CDS 69113165 69113266 69113165 ID=Msa0220720-mRNA-1:cds;Parent=Msa0220720-mRNA-1
chr2_1 CDS 69112890 69113003 69112890 ID=Msa0220720-mRNA-1:cds;Parent=Msa0220720-mRNA-1
chr2_1 CDS 69112178 69112351 69112178 ID=Msa0220720-mRNA-1:cds;Parent=Msa0220720-mRNA-1
chr2_1 three_prime_UTR 69112075 69112177 69112075 ID=Msa0220720-mRNA-1:three_prime_utr;Parent=Msa0220720-mRNA-1
chr2_1 three_prime_UTR 69111909 69112052 69111909 ID=Msa0220720-mRNA-1:three_prime_utr;Parent=Msa0220720-mRNA-1
chr2_1 three_prime_UTR 69111760 69111872 69111760 ID=Msa0220720-mRNA-1:three_prime_utr;Parent=Msa0220720-mRNA-1
Gene Sequence

>Msa0220720

ATGCTAGCGTTTTCGAGAGGCGTGGTTTCTCGTCTACGGCAATTCCCTGTGGTGCCACTGCCGCGGTTTTTGAGTTCGGAGGTGGAGACTATACGGAGGATTGAAGCAAAACCTAGTGTGATGACACCGAATTCACAACGAACTGGTGTTATAGCTGTAAAATGTGGAATGACTGCACTTTGGGATAAATGGGGTGCTAGAGTTCCAATTTCTATCCTTTGGGTTGATGACAACATTGTCTCTCAGATTGGTTGTGGACAGAAGAAGGAGAAACACTCGACAAAGCCTGAAGTGGGTCATTTTAGGGCTCAAGGAGTTCCCATGAAGAGGAAGCTTCAGGAGTTTCGAGTGACAGAGGATGCACTTCTTCCTGTTGGTACATCGCTTAATGTTCGCCATTTTGTTCCCGGACAGTATGTTGACATCACAGGAATCACTAAAGGAAAAGGTTTTCAGGGTGTAATGGACCGGTATGATTTCAAGGGAGGTTCAGCATCCCATGGGAATTCGAAAGCACATAGAACCATGGGTTCTTCAGGAATGCTTGGTCCTTGTAAGGTTTTTAAAGGTAAAAAAATGCCGGGGAGAATGGGTGGGAAGCAAAGAACAGTAAAAAATGTATGGGTCTACAAAATTGATCCAGCAAGAAATTTGATGTGGGTGAAAGGCCAGGTCCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCAGTTTATGAAAAACCTGAGACATCTATACTTCCTTTCCCAACTTACTTTGTGCCAGAAGATGAAGATACAGATGATATGAAACCTCTGGTTGCTGATCTTGGGGATGTGGATCCATTTATGGTTACTGATTAA

Protein sequence

>Msa0220720

MLAFSRGVVSRLRQFPVVPLPRFLSSEVETIRRIEAKPSVMTPNSQRTGVIAVKCGMTALWDKWGARVPISILWVDDNIVSQIGCGQKKEKHSTKPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVMDRYDFKGGSASHGNSKAHRTMGSSGMLGPCKVFKGKKMPGRMGGKQRTVKNVWVYKIDPARNLMWVKGQVPGATGNFVFIKDAVYEKPETSILPFPTYFVPEDEDTDDMKPLVADLGDVDPFMVTD*