Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163420 | sp|P49636|RL40_NICSY | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.93e-90 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163420 | A0A022R0F0 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 5.29e-89 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024340 | Msa0163420 | 0.992174 | 9.915378e-192 | -8.615850e-47 |
| Msa0163420 | Msa0220720 | 0.804574 | 2.023900e-49 | -8.615850e-47 |
| Msa0163420 | Msa0299870 | 0.800882 | 1.170029e-48 | -8.615850e-47 |
| Msa0163420 | Msa0339250 | 0.813245 | 2.821398e-51 | -8.615850e-47 |
| Msa0163420 | Msa0395820 | 0.821955 | 3.066082e-53 | -8.615850e-47 |
| Msa0163420 | Msa0689260 | 0.800298 | 1.538812e-48 | -8.615850e-47 |
| Msa0163420 | Msa1006840 | 0.805728 | 1.160492e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163420 | MtrunA17_Chr7g0266661 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 1.02e-92 | 263 |
| Msa0163420 | MtrunA17_Chr1g0178381 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 1.02e-92 | 263 |
| Msa0163420 | MtrunA17_Chr3g0127481 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 1.02e-92 | 263 |
| Msa0163420 | MtrunA17_Chr6g0475951 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 7.56e-51 | 155 |
| Msa0163420 | MtrunA17_Chr4g0037241 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 7.41e-50 | 155 |
| Msa0163420 | MtrunA17_Chr4g0037241 | 62.162 | 74 | 28 | 0 | 3 | 76 | 79 | 152 | 1.45e-26 | 96.7 |
| Msa0163420 | MtrunA17_Chr5g0444101 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 7.41e-50 | 155 |
| Msa0163420 | MtrunA17_Chr5g0444101 | 62.162 | 74 | 28 | 0 | 3 | 76 | 79 | 152 | 1.45e-26 | 96.7 |
| Msa0163420 | MtrunA17_Chr6g0475961 | 98.701 | 77 | 1 | 0 | 1 | 77 | 4 | 80 | 8.42e-50 | 157 |
| Msa0163420 | MtrunA17_Chr6g0475961 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 8.42e-50 | 157 |
| Msa0163420 | MtrunA17_Chr6g0475961 | 100.000 | 37 | 0 | 0 | 1 | 37 | 156 | 192 | 5.25e-18 | 75.9 |
| Msa0163420 | MtrunA17_Chr8g0380181 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.14e-49 | 155 |
| Msa0163420 | MtrunA17_Chr5g0413361 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.22e-49 | 155 |
| Msa0163420 | MtrunA17_Chr7g0274921 | 98.701 | 77 | 1 | 0 | 1 | 77 | 3 | 79 | 2.98e-49 | 157 |
| Msa0163420 | MtrunA17_Chr7g0274921 | 98.701 | 77 | 1 | 0 | 1 | 77 | 79 | 155 | 2.98e-49 | 157 |
| Msa0163420 | MtrunA17_Chr7g0274921 | 98.701 | 77 | 1 | 0 | 1 | 77 | 155 | 231 | 4.05e-49 | 156 |
| Msa0163420 | MtrunA17_Chr1g0181441 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 4.38e-49 | 156 |
| Msa0163420 | MtrunA17_Chr1g0181441 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 4.38e-49 | 156 |
| Msa0163420 | MtrunA17_Chr1g0181441 | 100.000 | 76 | 0 | 0 | 1 | 76 | 153 | 228 | 6.69e-49 | 156 |
| Msa0163420 | MtrunA17_Chr4g0041751 | 97.403 | 77 | 2 | 0 | 1 | 77 | 77 | 153 | 1.10e-48 | 155 |
| Msa0163420 | MtrunA17_Chr4g0041751 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 2.02e-48 | 154 |
| Msa0163420 | MtrunA17_Chr4g0041751 | 69.737 | 76 | 23 | 0 | 1 | 76 | 153 | 228 | 4.53e-30 | 107 |
| Msa0163420 | MtrunA17_Chr8g0377821 | 98.701 | 77 | 1 | 0 | 1 | 77 | 9 | 85 | 2.18e-47 | 156 |
| Msa0163420 | MtrunA17_Chr8g0377821 | 98.701 | 77 | 1 | 0 | 1 | 77 | 85 | 161 | 2.18e-47 | 156 |
| Msa0163420 | MtrunA17_Chr8g0377821 | 98.701 | 77 | 1 | 0 | 1 | 77 | 161 | 237 | 2.18e-47 | 156 |
| Msa0163420 | MtrunA17_Chr8g0377821 | 98.701 | 77 | 1 | 0 | 1 | 77 | 237 | 313 | 2.18e-47 | 156 |
| Msa0163420 | MtrunA17_Chr8g0377821 | 100.000 | 76 | 0 | 0 | 1 | 76 | 313 | 388 | 3.31e-47 | 156 |
| Msa0163420 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 4 | 80 | 6.56e-47 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 6.56e-47 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 156 | 232 | 6.56e-47 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 232 | 308 | 6.56e-47 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 308 | 384 | 6.56e-47 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046801 | 98.701 | 77 | 1 | 0 | 1 | 77 | 384 | 460 | 8.81e-47 | 156 |
| Msa0163420 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 5 | 81 | 7.41e-47 | 156 |
| Msa0163420 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 81 | 157 | 7.41e-47 | 156 |
| Msa0163420 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 157 | 233 | 7.41e-47 | 156 |
| Msa0163420 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 233 | 309 | 7.41e-47 | 156 |
| Msa0163420 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 309 | 385 | 7.41e-47 | 156 |
| Msa0163420 | MtrunA17_Chr4g0041641 | 98.701 | 77 | 1 | 0 | 1 | 77 | 385 | 461 | 9.86e-47 | 156 |
| Msa0163420 | MtrunA17_Chr8g0374171 | 96.104 | 77 | 3 | 0 | 1 | 77 | 74 | 150 | 1.51e-46 | 148 |
| Msa0163420 | MtrunA17_Chr8g0374171 | 91.429 | 35 | 3 | 0 | 43 | 77 | 40 | 74 | 2.72e-15 | 68.2 |
| Msa0163420 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 1.93e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 1.93e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 1.93e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 1.93e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 1.93e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0041701 | 98.701 | 77 | 1 | 0 | 1 | 77 | 381 | 457 | 1.93e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0041701 | 100.000 | 76 | 0 | 0 | 1 | 76 | 457 | 532 | 2.86e-46 | 156 |
| Msa0163420 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 4 | 80 | 2.01e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 2.01e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 156 | 232 | 2.01e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 232 | 308 | 2.01e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 384 | 460 | 2.01e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0048591 | 98.701 | 77 | 1 | 0 | 1 | 77 | 460 | 536 | 2.69e-46 | 156 |
| Msa0163420 | MtrunA17_Chr4g0048591 | 96.104 | 77 | 3 | 0 | 1 | 77 | 308 | 384 | 7.64e-45 | 152 |
| Msa0163420 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 4 | 80 | 2.03e-46 | 157 |
| Msa0163420 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 2.03e-46 | 157 |
| Msa0163420 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 156 | 232 | 2.03e-46 | 157 |
| Msa0163420 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 232 | 308 | 2.03e-46 | 157 |
| Msa0163420 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 308 | 384 | 2.03e-46 | 157 |
| Msa0163420 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 384 | 460 | 2.03e-46 | 157 |
| Msa0163420 | MtrunA17_Chr8g0342711 | 98.701 | 77 | 1 | 0 | 1 | 77 | 460 | 536 | 2.75e-46 | 156 |
| Msa0163420 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 80 | 156 | 3.74e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 156 | 232 | 3.74e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 232 | 308 | 3.74e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 368 | 444 | 3.74e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 444 | 520 | 3.74e-46 | 157 |
| Msa0163420 | MtrunA17_Chr4g0046831 | 98.701 | 77 | 1 | 0 | 1 | 77 | 520 | 596 | 4.99e-46 | 156 |
| Msa0163420 | MtrunA17_Chr4g0046831 | 97.403 | 77 | 2 | 0 | 1 | 77 | 4 | 80 | 1.00e-44 | 153 |
| Msa0163420 | MtrunA17_Chr4g0046831 | 77.922 | 77 | 1 | 1 | 1 | 77 | 308 | 368 | 2.06e-30 | 114 |
| Msa0163420 | MtrunA17_Chr1g0169371 | 71.053 | 76 | 22 | 0 | 1 | 76 | 215 | 290 | 1.24e-28 | 105 |
| Msa0163420 | MtrunA17_Chr5g0433721 | 68.831 | 77 | 23 | 1 | 1 | 76 | 194 | 270 | 8.58e-28 | 103 |
| Msa0163420 | MtrunA17_Chr5g0433631 | 69.863 | 73 | 22 | 0 | 1 | 73 | 266 | 338 | 6.78e-27 | 102 |
| Msa0163420 | MtrunA17_Chr5g0428191 | 68.421 | 76 | 24 | 0 | 1 | 76 | 241 | 316 | 1.37e-25 | 98.2 |
| Msa0163420 | MtrunA17_Chr5g0424981 | 60.000 | 75 | 30 | 0 | 1 | 75 | 2 | 76 | 3.91e-25 | 90.9 |
| Msa0163420 | MtrunA17_Chr8g0374161 | 100.000 | 44 | 0 | 0 | 1 | 44 | 9 | 52 | 6.52e-25 | 89.7 |
| Msa0163420 | MtrunA17_Chr2g0298951 | 61.333 | 75 | 29 | 0 | 1 | 75 | 236 | 310 | 2.58e-23 | 92.0 |
| Msa0163420 | MtrunA17_Chr5g0433411 | 64.384 | 73 | 26 | 0 | 1 | 73 | 267 | 339 | 3.02e-23 | 92.4 |
| Msa0163420 | MtrunA17_Chr5g0433521 | 61.333 | 75 | 29 | 0 | 1 | 75 | 240 | 314 | 6.32e-23 | 90.9 |
| Msa0163420 | MtrunA17_Chr5g0433661 | 65.333 | 75 | 26 | 0 | 1 | 75 | 278 | 352 | 7.21e-23 | 91.3 |
| Msa0163420 | MtrunA17_Chr5g0433681 | 59.211 | 76 | 30 | 1 | 1 | 75 | 1 | 76 | 7.73e-23 | 85.1 |
| Msa0163420 | MtrunA17_Chr7g0259431 | 58.667 | 75 | 31 | 0 | 1 | 75 | 223 | 297 | 7.85e-22 | 87.8 |
| Msa0163420 | MtrunA17_Chr2g0298941 | 60.000 | 75 | 30 | 0 | 1 | 75 | 177 | 251 | 8.46e-22 | 87.0 |
| Msa0163420 | MtrunA17_Chr1g0169401 | 60.000 | 70 | 28 | 0 | 7 | 76 | 2 | 71 | 3.12e-21 | 80.9 |
| Msa0163420 | MtrunA17_Chr4g0003111 | 53.333 | 75 | 35 | 0 | 1 | 75 | 4 | 78 | 7.83e-21 | 80.1 |
| Msa0163420 | MtrunA17_Chr5g0433531 | 57.333 | 75 | 31 | 1 | 1 | 74 | 244 | 318 | 2.69e-19 | 81.3 |
| Msa0163420 | MtrunA17_Chr5g0433701 | 58.824 | 68 | 27 | 1 | 1 | 67 | 1 | 68 | 7.43e-19 | 75.5 |
| Msa0163420 | MtrunA17_Chr7g0223111 | 60.526 | 76 | 29 | 1 | 1 | 75 | 267 | 342 | 9.10e-19 | 80.1 |
| Msa0163420 | MtrunA17_Chr5g0424971 | 53.333 | 75 | 35 | 0 | 1 | 75 | 252 | 326 | 5.45e-18 | 77.8 |
| Msa0163420 | MtrunA17_Chr5g0433391 | 48.684 | 76 | 38 | 1 | 1 | 75 | 8 | 83 | 9.08e-16 | 67.4 |
| Msa0163420 | MtrunA17_Chr5g0433711 | 58.333 | 60 | 25 | 0 | 15 | 74 | 4 | 63 | 4.43e-15 | 65.1 |
| Msa0163420 | MtrunA17_Chr5g0433381 | 50.649 | 77 | 36 | 2 | 1 | 75 | 9 | 85 | 9.67e-15 | 64.7 |
| Msa0163420 | MtrunA17_Chr4g0041621 | 76.471 | 34 | 8 | 0 | 44 | 77 | 11 | 44 | 5.10e-12 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163420 | AT2G36170.1 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 4.98e-91 | 259 |
| Msa0163420 | AT3G52590.1 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 4.98e-91 | 259 |
| Msa0163420 | AT4G05320.7 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.79e-50 | 156 |
| Msa0163420 | AT4G05320.7 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 7.61e-50 | 156 |
| Msa0163420 | AT4G05050.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.79e-50 | 156 |
| Msa0163420 | AT4G05050.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 7.61e-50 | 156 |
| Msa0163420 | AT2G35635.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.02e-49 | 155 |
| Msa0163420 | AT2G35635.1 | 60.526 | 76 | 30 | 0 | 3 | 78 | 79 | 154 | 2.08e-26 | 96.7 |
| Msa0163420 | AT2G47110.2 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.54e-49 | 155 |
| Msa0163420 | AT2G47110.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.54e-49 | 155 |
| Msa0163420 | AT1G31340.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.58e-49 | 155 |
| Msa0163420 | AT1G31340.1 | 62.667 | 75 | 28 | 0 | 3 | 77 | 79 | 153 | 5.35e-27 | 98.6 |
| Msa0163420 | AT3G62250.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.77e-49 | 155 |
| Msa0163420 | AT1G23410.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.78e-49 | 155 |
| Msa0163420 | AT4G02890.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0163420 | AT4G02890.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0163420 | AT4G02890.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0163420 | AT4G02890.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0163420 | AT4G02890.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0163420 | AT4G02890.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0163420 | AT4G05050.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0163420 | AT4G05050.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0163420 | AT4G05050.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0163420 | AT4G05050.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0163420 | AT4G05050.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0163420 | AT4G05050.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0163420 | AT4G05050.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 5.16e-49 | 156 |
| Msa0163420 | AT4G05050.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 5.16e-49 | 156 |
| Msa0163420 | AT4G05050.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 6.92e-49 | 156 |
| Msa0163420 | AT1G55060.1 | 97.403 | 77 | 2 | 0 | 1 | 77 | 77 | 153 | 1.98e-48 | 155 |
| Msa0163420 | AT1G55060.1 | 97.368 | 76 | 2 | 0 | 1 | 76 | 153 | 228 | 2.56e-46 | 149 |
| Msa0163420 | AT1G55060.1 | 85.714 | 77 | 11 | 0 | 1 | 77 | 1 | 77 | 2.39e-42 | 139 |
| Msa0163420 | AT4G05320.5 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.48e-48 | 157 |
| Msa0163420 | AT4G05320.5 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.48e-48 | 157 |
| Msa0163420 | AT4G05320.5 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.48e-48 | 157 |
| Msa0163420 | AT4G05320.5 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 4.65e-48 | 156 |
| Msa0163420 | AT4G05320.8 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.48e-48 | 157 |
| Msa0163420 | AT4G05320.8 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.48e-48 | 157 |
| Msa0163420 | AT4G05320.8 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.48e-48 | 157 |
| Msa0163420 | AT4G05320.8 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 4.65e-48 | 156 |
| Msa0163420 | AT4G02890.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.48e-48 | 157 |
| Msa0163420 | AT4G02890.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.48e-48 | 157 |
| Msa0163420 | AT4G02890.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.48e-48 | 157 |
| Msa0163420 | AT4G02890.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 4.65e-48 | 156 |
| Msa0163420 | AT4G02890.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.48e-48 | 157 |
| Msa0163420 | AT4G02890.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.48e-48 | 157 |
| Msa0163420 | AT4G02890.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.48e-48 | 157 |
| Msa0163420 | AT4G02890.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 4.65e-48 | 156 |
| Msa0163420 | AT5G03240.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.3 | 100.000 | 76 | 0 | 0 | 1 | 76 | 229 | 304 | 5.49e-48 | 156 |
| Msa0163420 | AT5G03240.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.2 | 100.000 | 76 | 0 | 0 | 1 | 76 | 229 | 304 | 5.49e-48 | 156 |
| Msa0163420 | AT5G03240.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.64e-48 | 156 |
| Msa0163420 | AT5G03240.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 229 | 304 | 5.49e-48 | 156 |
| Msa0163420 | AT5G20620.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 3.64e-48 | 156 |
| Msa0163420 | AT5G20620.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 3.64e-48 | 156 |
| Msa0163420 | AT5G20620.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 3.64e-48 | 156 |
| Msa0163420 | AT5G20620.2 | 100.000 | 76 | 0 | 0 | 1 | 76 | 229 | 304 | 5.49e-48 | 156 |
| Msa0163420 | AT1G65350.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 6.38e-48 | 156 |
| Msa0163420 | AT1G65350.1 | 97.403 | 77 | 2 | 0 | 1 | 77 | 152 | 228 | 9.64e-47 | 153 |
| Msa0163420 | AT1G65350.1 | 97.403 | 77 | 1 | 1 | 1 | 77 | 77 | 152 | 7.14e-45 | 148 |
| Msa0163420 | AT1G65350.1 | 80.000 | 90 | 4 | 1 | 1 | 76 | 228 | 317 | 6.29e-39 | 133 |
| Msa0163420 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 2.68e-47 | 156 |
| Msa0163420 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.6 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 2.68e-47 | 156 |
| Msa0163420 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 1.99e-47 | 157 |
| Msa0163420 | AT4G05320.3 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 2.68e-47 | 156 |
| Msa0163420 | AT5G20620.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 2.05e-47 | 157 |
| Msa0163420 | AT5G20620.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 2.05e-47 | 157 |
| Msa0163420 | AT5G20620.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 2.05e-47 | 157 |
| Msa0163420 | AT5G20620.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 2.05e-47 | 157 |
| Msa0163420 | AT5G20620.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 305 | 380 | 3.08e-47 | 156 |
| Msa0163420 | AT5G37640.1 | 96.104 | 77 | 3 | 0 | 1 | 77 | 79 | 155 | 4.82e-47 | 154 |
| Msa0163420 | AT5G37640.1 | 92.208 | 77 | 6 | 0 | 1 | 77 | 155 | 231 | 7.21e-43 | 143 |
| Msa0163420 | AT5G37640.1 | 92.208 | 77 | 5 | 1 | 1 | 76 | 231 | 307 | 8.70e-41 | 138 |
| Msa0163420 | AT5G37640.1 | 77.922 | 77 | 17 | 0 | 1 | 77 | 3 | 79 | 5.19e-34 | 120 |
| Msa0163420 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.2 | 98.701 | 77 | 1 | 0 | 1 | 77 | 381 | 457 | 1.12e-46 | 156 |
| Msa0163420 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 1 | 77 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 77 | 153 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 153 | 229 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 229 | 305 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 305 | 381 | 8.32e-47 | 157 |
| Msa0163420 | AT4G05320.4 | 98.701 | 77 | 1 | 0 | 1 | 77 | 381 | 457 | 1.12e-46 | 156 |
| Msa0163420 | AT3G09790.2 | 92.208 | 77 | 6 | 0 | 1 | 77 | 79 | 155 | 3.53e-40 | 141 |
| Msa0163420 | AT3G09790.2 | 84.416 | 77 | 12 | 0 | 1 | 77 | 3 | 79 | 9.50e-37 | 132 |
| Msa0163420 | AT3G09790.2 | 79.730 | 74 | 15 | 0 | 1 | 74 | 552 | 625 | 2.29e-31 | 117 |
| Msa0163420 | AT3G09790.2 | 70.130 | 77 | 23 | 0 | 1 | 77 | 393 | 469 | 1.38e-28 | 109 |
| Msa0163420 | AT3G09790.2 | 73.684 | 76 | 18 | 1 | 1 | 74 | 319 | 394 | 3.40e-27 | 105 |
| Msa0163420 | AT3G09790.2 | 69.512 | 82 | 20 | 1 | 1 | 77 | 238 | 319 | 7.55e-27 | 104 |
| Msa0163420 | AT3G09790.2 | 67.073 | 82 | 20 | 2 | 1 | 75 | 155 | 236 | 3.77e-26 | 102 |
| Msa0163420 | AT3G09790.2 | 65.476 | 84 | 22 | 1 | 1 | 77 | 469 | 552 | 2.67e-25 | 100 |
| Msa0163420 | AT3G09790.1 | 92.208 | 77 | 6 | 0 | 1 | 77 | 79 | 155 | 3.53e-40 | 141 |
| Msa0163420 | AT3G09790.1 | 84.416 | 77 | 12 | 0 | 1 | 77 | 3 | 79 | 9.50e-37 | 132 |
| Msa0163420 | AT3G09790.1 | 79.730 | 74 | 15 | 0 | 1 | 74 | 552 | 625 | 2.29e-31 | 117 |
| Msa0163420 | AT3G09790.1 | 70.130 | 77 | 23 | 0 | 1 | 77 | 393 | 469 | 1.38e-28 | 109 |
| Msa0163420 | AT3G09790.1 | 73.684 | 76 | 18 | 1 | 1 | 74 | 319 | 394 | 3.40e-27 | 105 |
| Msa0163420 | AT3G09790.1 | 69.512 | 82 | 20 | 1 | 1 | 77 | 238 | 319 | 7.55e-27 | 104 |
| Msa0163420 | AT3G09790.1 | 67.073 | 82 | 20 | 2 | 1 | 75 | 155 | 236 | 3.77e-26 | 102 |
| Msa0163420 | AT3G09790.1 | 65.476 | 84 | 22 | 1 | 1 | 77 | 469 | 552 | 2.67e-25 | 100 |
| Msa0163420 | AT1G53930.1 | 75.342 | 73 | 18 | 0 | 1 | 73 | 86 | 158 | 6.64e-33 | 113 |
| Msa0163420 | AT1G53950.1 | 61.972 | 71 | 27 | 0 | 1 | 71 | 69 | 139 | 2.82e-25 | 93.6 |
| Msa0163420 | AT1G11980.1 | 55.263 | 76 | 34 | 0 | 1 | 76 | 1 | 76 | 2.91e-24 | 89.0 |
| Msa0163420 | AT1G53945.1 | 46.269 | 67 | 36 | 0 | 1 | 67 | 46 | 112 | 7.62e-13 | 61.2 |
| Msa0163420 | AT4G12570.1 | 38.667 | 75 | 45 | 1 | 1 | 74 | 95 | 169 | 4.34e-12 | 62.4 |
| Msa0163420 | AT5G42220.2 | 38.889 | 72 | 44 | 0 | 1 | 72 | 24 | 95 | 6.28e-12 | 61.6 |
| Msa0163420 | AT5G42220.1 | 38.889 | 72 | 44 | 0 | 1 | 72 | 24 | 95 | 6.28e-12 | 61.6 |
Find 43 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATAATAAATATTTAT+AGG | 0.223990 | 1_4:-41573658 | None:intergenic |
| ACCTTCTTTGTCTTGAATCT+TGG | 0.270573 | 1_4:-41572350 | None:intergenic |
| ATCTACTTAATCTTCTTCTT+TGG | 0.272953 | 1_4:-41573359 | None:intergenic |
| CGAGCCTTCTTTGATGGCTT+TGG | 0.276267 | 1_4:+41572660 | Msa0163420:CDS |
| GAGTAATCGTCTTCCCTGTT+AGG | 0.315119 | 1_4:-41572288 | None:intergenic |
| GAAGAAGATTAAGTAGATTA+TGG | 0.322685 | 1_4:+41573364 | Msa0163420:exon |
| TATTATCGAGCCTTCTTTGA+TGG | 0.326217 | 1_4:+41572654 | Msa0163420:CDS |
| ATGACTCATAGCAACAATTT+CGG | 0.375143 | 1_4:+41573578 | Msa0163420:three_prime_UTR |
| AAAATCAAACGCTGCTGATC+TGG | 0.375600 | 1_4:-41572449 | None:intergenic |
| TTCCTGCAGTTCACAGCCCT+TGG | 0.384485 | 1_4:-41573197 | None:intergenic |
| CTACATTGCATCTTGTGCTT+AGG | 0.389612 | 1_4:+41572620 | Msa0163420:CDS |
| AGAATTGAAACTTTATATGC+TGG | 0.399950 | 1_4:-41572177 | None:intergenic |
| AGTAATCGTCTTCCCTGTTA+GGG | 0.439791 | 1_4:-41572287 | None:intergenic |
| CTACGGTTTGATAAAATTTG+AGG | 0.444323 | 1_4:-41572147 | None:intergenic |
| GAAGTGTGGTCACAGTAATC+AGG | 0.450078 | 1_4:+41573223 | Msa0163420:CDS |
| TGATGTTGTTGTTCTCGTGT+GGG | 0.450921 | 1_4:+41573390 | Msa0163420:three_prime_UTR |
| GAATTGAAACTTTATATGCT+GGG | 0.455808 | 1_4:-41572176 | None:intergenic |
| CATCTTGTGCTTAGGCTTCG+TGG | 0.456490 | 1_4:+41572628 | Msa0163420:CDS |
| CAACTGTATTAATCAACAAT+TGG | 0.458901 | 1_4:-41573428 | None:intergenic |
| TTTGAATGTTGTAATCAGCT+AGG | 0.460200 | 1_4:-41572502 | None:intergenic |
| CTGATGTTGTTGTTCTCGTG+TGG | 0.465175 | 1_4:+41573389 | Msa0163420:three_prime_UTR |
| TCTCGTGTGGGGTGGTGAGC+TGG | 0.468134 | 1_4:+41573402 | Msa0163420:three_prime_UTR |
| AGCTGATTACAACATTCAAA+AGG | 0.468739 | 1_4:+41572505 | Msa0163420:CDS |
| ATCCAAGGGCTGTGAACTGC+AGG | 0.470105 | 1_4:+41573195 | Msa0163420:CDS |
| TGAGATCATGTGTTTAGTAT+TGG | 0.479006 | 1_4:+41573449 | Msa0163420:three_prime_UTR |
| GCTGGAAAACAGCTTGAAGA+TGG | 0.489439 | 1_4:+41572473 | Msa0163420:CDS |
| ATCAAACGCTGCTGATCTGG+TGG | 0.490239 | 1_4:-41572446 | None:intergenic |
| GCTATGCTCGTCTGCATCCA+AGG | 0.492282 | 1_4:+41573180 | Msa0163420:CDS |
| GAATTGCGAAACGTGAAGAA+AGG | 0.492884 | 1_4:-41572206 | None:intergenic |
| TTGAATGTTGTAATCAGCTA+GGG | 0.502461 | 1_4:-41572501 | None:intergenic |
| CTTCTTTGATGGCTTTGGCT+AGG | 0.506162 | 1_4:+41572665 | Msa0163420:CDS |
| AATTGCGAAACGTGAAGAAA+GGG | 0.507534 | 1_4:-41572205 | None:intergenic |
| CTAGCCAAAGCCATCAAAGA+AGG | 0.530966 | 1_4:-41572664 | None:intergenic |
| CTTGGCTTTGACATTGTCGA+TGG | 0.532900 | 1_4:-41572332 | None:intergenic |
| GCTGATTACAACATTCAAAA+GGG | 0.540486 | 1_4:+41572506 | Msa0163420:CDS |
| AGGAACATACTTGCGGCAGA+TGG | 0.561328 | 1_4:-41572707 | None:intergenic |
| GCCAAGATTCAAGACAAAGA+AGG | 0.569347 | 1_4:+41572349 | Msa0163420:CDS |
| CTATGCTCGTCTGCATCCAA+GGG | 0.587050 | 1_4:+41573181 | Msa0163420:CDS |
| GATGTTGTTGTTCTCGTGTG+GGG | 0.620497 | 1_4:+41573391 | Msa0163420:three_prime_UTR |
| GTTGTTGTTCTCGTGTGGGG+TGG | 0.633785 | 1_4:+41573394 | Msa0163420:three_prime_UTR |
| TCAAACGCTGCTGATCTGGT+GGG | 0.641805 | 1_4:-41572445 | None:intergenic |
| ATTGCGAAACGTGAAGAAAG+GGG | 0.650790 | 1_4:-41572204 | None:intergenic |
| CTTGTGCTTAGGCTTCGTGG+TGG | 0.730767 | 1_4:+41572631 | Msa0163420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAAATATTTAT+AGG | - | chr1_4:41573661-41573680 | None:intergenic | 0.0% |
| !! | TAATAATAATAAATATTTAT+AGG | - | chr1_4:41573661-41573680 | None:intergenic | 0.0% |
| !!! | TTTTTTTTCAACTGAAAAAT+TGG | - | chr1_4:41572231-41572250 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAAAAAGGTGA+AGG | - | chr1_4:41572739-41572758 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTTGCTTAATTC+AGG | + | chr1_4:41572753-41572772 | Msa0163420:intron | 15.0% |
| !!! | TTTTTTTTCAACTGAAAAAT+TGG | - | chr1_4:41572231-41572250 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAAAAAGGTGA+AGG | - | chr1_4:41572739-41572758 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTTGCTTAATTC+AGG | + | chr1_4:41572753-41572772 | Msa0163420:intron | 15.0% |
| !! | ATAAAAAATGCAAAATGATG+AGG | - | chr1_4:41572548-41572567 | None:intergenic | 20.0% |
| !! | TCTTAAATTATTATCTGTGT+TGG | - | chr1_4:41572915-41572934 | None:intergenic | 20.0% |
| !!! | GTGTAAAAACTATTTTACAT+TGG | + | chr1_4:41573117-41573136 | Msa0163420:intron | 20.0% |
| !! | ATAAAAAATGCAAAATGATG+AGG | - | chr1_4:41572548-41572567 | None:intergenic | 20.0% |
| !! | TCTTAAATTATTATCTGTGT+TGG | - | chr1_4:41572915-41572934 | None:intergenic | 20.0% |
| !!! | GTGTAAAAACTATTTTACAT+TGG | + | chr1_4:41573117-41573136 | Msa0163420:intron | 20.0% |
| ! | GAATTGAAACTTTATATGCT+GGG | - | chr1_4:41572179-41572198 | None:intergenic | 25.0% |
| ! | AGAATTGAAACTTTATATGC+TGG | - | chr1_4:41572180-41572199 | None:intergenic | 25.0% |
| !!! | CTTGAACACGTTTAATTTTT+AGG | + | chr1_4:41572796-41572815 | Msa0163420:intron | 25.0% |
| !!! | CGTTTAATTTTTAGGATTCA+TGG | + | chr1_4:41572804-41572823 | Msa0163420:intron | 25.0% |
| !! | ACATCACTACATTTTTACAT+TGG | + | chr1_4:41573038-41573057 | Msa0163420:intron | 25.0% |
| !! | ACATTGGCATTTAAGATTAA+TGG | + | chr1_4:41573054-41573073 | Msa0163420:intron | 25.0% |
| ! | TATAACATGTTGAAAGTTAG+AGG | + | chr1_4:41573077-41573096 | Msa0163420:intron | 25.0% |
| ! | ATAACATGTTGAAAGTTAGA+GGG | + | chr1_4:41573078-41573097 | Msa0163420:intron | 25.0% |
| ! | AATGACAGGGAAAAAAAAAT+TGG | - | chr1_4:41573149-41573168 | None:intergenic | 25.0% |
| ! | TATAAACTAAAAACCTAGAG+TGG | - | chr1_4:41573261-41573280 | None:intergenic | 25.0% |
| ! | ATCTACTTAATCTTCTTCTT+TGG | - | chr1_4:41573362-41573381 | None:intergenic | 25.0% |
| ! | GAAGAAGATTAAGTAGATTA+TGG | + | chr1_4:41573364-41573383 | Msa0163420:exon | 25.0% |
| ! | CAACTGTATTAATCAACAAT+TGG | - | chr1_4:41573431-41573450 | None:intergenic | 25.0% |
| ! | GAATTGAAACTTTATATGCT+GGG | - | chr1_4:41572179-41572198 | None:intergenic | 25.0% |
| ! | AGAATTGAAACTTTATATGC+TGG | - | chr1_4:41572180-41572199 | None:intergenic | 25.0% |
| !!! | CTTGAACACGTTTAATTTTT+AGG | + | chr1_4:41572796-41572815 | Msa0163420:intron | 25.0% |
| !!! | CGTTTAATTTTTAGGATTCA+TGG | + | chr1_4:41572804-41572823 | Msa0163420:intron | 25.0% |
| !! | ACATCACTACATTTTTACAT+TGG | + | chr1_4:41573038-41573057 | Msa0163420:intron | 25.0% |
| !! | ACATTGGCATTTAAGATTAA+TGG | + | chr1_4:41573054-41573073 | Msa0163420:intron | 25.0% |
| ! | TATAACATGTTGAAAGTTAG+AGG | + | chr1_4:41573077-41573096 | Msa0163420:intron | 25.0% |
| ! | ATAACATGTTGAAAGTTAGA+GGG | + | chr1_4:41573078-41573097 | Msa0163420:intron | 25.0% |
| ! | AATGACAGGGAAAAAAAAAT+TGG | - | chr1_4:41573149-41573168 | None:intergenic | 25.0% |
| ! | TATAAACTAAAAACCTAGAG+TGG | - | chr1_4:41573261-41573280 | None:intergenic | 25.0% |
| ! | ATCTACTTAATCTTCTTCTT+TGG | - | chr1_4:41573362-41573381 | None:intergenic | 25.0% |
| ! | GAAGAAGATTAAGTAGATTA+TGG | + | chr1_4:41573364-41573383 | Msa0163420:exon | 25.0% |
| ! | CAACTGTATTAATCAACAAT+TGG | - | chr1_4:41573431-41573450 | None:intergenic | 25.0% |
| CTACGGTTTGATAAAATTTG+AGG | - | chr1_4:41572150-41572169 | None:intergenic | 30.0% | |
| !!! | TATATGCTGGGTTTTTTCTA+CGG | - | chr1_4:41572167-41572186 | None:intergenic | 30.0% |
| !! | TCTGACATTTTTGATTATCC+AGG | + | chr1_4:41572419-41572438 | Msa0163420:intron | 30.0% |
| TTGAATGTTGTAATCAGCTA+GGG | - | chr1_4:41572504-41572523 | None:intergenic | 30.0% | |
| TTTGAATGTTGTAATCAGCT+AGG | - | chr1_4:41572505-41572524 | None:intergenic | 30.0% | |
| AGCTGATTACAACATTCAAA+AGG | + | chr1_4:41572505-41572524 | Msa0163420:CDS | 30.0% | |
| GCTGATTACAACATTCAAAA+GGG | + | chr1_4:41572506-41572525 | Msa0163420:CDS | 30.0% | |
| ACGTAATTCAGTGTAATCAT+AGG | + | chr1_4:41572940-41572959 | Msa0163420:intron | 30.0% | |
| GTAATCATAGGTGTTAATGT+TGG | + | chr1_4:41572952-41572971 | Msa0163420:intron | 30.0% | |
| GCATCTAACAAAAAATGACA+GGG | - | chr1_4:41573162-41573181 | None:intergenic | 30.0% | |
| AGCATCTAACAAAAAATGAC+AGG | - | chr1_4:41573163-41573182 | None:intergenic | 30.0% | |
| TGAGATCATGTGTTTAGTAT+TGG | + | chr1_4:41573449-41573468 | Msa0163420:three_prime_UTR | 30.0% | |
| ATCCTCAAAAACTAAAGACT+AGG | - | chr1_4:41573556-41573575 | None:intergenic | 30.0% | |
| ATGACTCATAGCAACAATTT+CGG | + | chr1_4:41573578-41573597 | Msa0163420:three_prime_UTR | 30.0% | |
| CTACGGTTTGATAAAATTTG+AGG | - | chr1_4:41572150-41572169 | None:intergenic | 30.0% | |
| !!! | TATATGCTGGGTTTTTTCTA+CGG | - | chr1_4:41572167-41572186 | None:intergenic | 30.0% |
| !! | TCTGACATTTTTGATTATCC+AGG | + | chr1_4:41572419-41572438 | Msa0163420:intron | 30.0% |
| TTGAATGTTGTAATCAGCTA+GGG | - | chr1_4:41572504-41572523 | None:intergenic | 30.0% | |
| TTTGAATGTTGTAATCAGCT+AGG | - | chr1_4:41572505-41572524 | None:intergenic | 30.0% | |
| AGCTGATTACAACATTCAAA+AGG | + | chr1_4:41572505-41572524 | Msa0163420:CDS | 30.0% | |
| GCTGATTACAACATTCAAAA+GGG | + | chr1_4:41572506-41572525 | Msa0163420:CDS | 30.0% | |
| ACGTAATTCAGTGTAATCAT+AGG | + | chr1_4:41572940-41572959 | Msa0163420:intron | 30.0% | |
| GTAATCATAGGTGTTAATGT+TGG | + | chr1_4:41572952-41572971 | Msa0163420:intron | 30.0% | |
| GCATCTAACAAAAAATGACA+GGG | - | chr1_4:41573162-41573181 | None:intergenic | 30.0% | |
| AGCATCTAACAAAAAATGAC+AGG | - | chr1_4:41573163-41573182 | None:intergenic | 30.0% | |
| TGAGATCATGTGTTTAGTAT+TGG | + | chr1_4:41573449-41573468 | Msa0163420:three_prime_UTR | 30.0% | |
| ATCCTCAAAAACTAAAGACT+AGG | - | chr1_4:41573556-41573575 | None:intergenic | 30.0% | |
| ATGACTCATAGCAACAATTT+CGG | + | chr1_4:41573578-41573597 | Msa0163420:three_prime_UTR | 30.0% | |
| AATTGCGAAACGTGAAGAAA+GGG | - | chr1_4:41572208-41572227 | None:intergenic | 35.0% | |
| ! | ATTTTCGTGAAAACCCTAAC+AGG | + | chr1_4:41572274-41572293 | Msa0163420:CDS | 35.0% |
| ! | TTTTCGTGAAAACCCTAACA+GGG | + | chr1_4:41572275-41572294 | Msa0163420:CDS | 35.0% |
| ACCTTCTTTGTCTTGAATCT+TGG | - | chr1_4:41572353-41572372 | None:intergenic | 35.0% | |
| TATTATCGAGCCTTCTTTGA+TGG | + | chr1_4:41572654-41572673 | Msa0163420:CDS | 35.0% | |
| !!! | GTCCTAGTCTTTAGTTTTTG+AGG | + | chr1_4:41573551-41573570 | Msa0163420:three_prime_UTR | 35.0% |
| AATTGCGAAACGTGAAGAAA+GGG | - | chr1_4:41572208-41572227 | None:intergenic | 35.0% | |
| ! | ATTTTCGTGAAAACCCTAAC+AGG | + | chr1_4:41572274-41572293 | Msa0163420:CDS | 35.0% |
| ! | TTTTCGTGAAAACCCTAACA+GGG | + | chr1_4:41572275-41572294 | Msa0163420:CDS | 35.0% |
| ACCTTCTTTGTCTTGAATCT+TGG | - | chr1_4:41572353-41572372 | None:intergenic | 35.0% | |
| TATTATCGAGCCTTCTTTGA+TGG | + | chr1_4:41572654-41572673 | Msa0163420:CDS | 35.0% | |
| !!! | GTCCTAGTCTTTAGTTTTTG+AGG | + | chr1_4:41573551-41573570 | Msa0163420:three_prime_UTR | 35.0% |
| ATTGCGAAACGTGAAGAAAG+GGG | - | chr1_4:41572207-41572226 | None:intergenic | 40.0% | |
| GAATTGCGAAACGTGAAGAA+AGG | - | chr1_4:41572209-41572228 | None:intergenic | 40.0% | |
| AGTAATCGTCTTCCCTGTTA+GGG | - | chr1_4:41572290-41572309 | None:intergenic | 40.0% | |
| GCCAAGATTCAAGACAAAGA+AGG | + | chr1_4:41572349-41572368 | Msa0163420:CDS | 40.0% | |
| AAAATCAAACGCTGCTGATC+TGG | - | chr1_4:41572452-41572471 | None:intergenic | 40.0% | |
| CTACATTGCATCTTGTGCTT+AGG | + | chr1_4:41572620-41572639 | Msa0163420:CDS | 40.0% | |
| AAAAAAGGTGAAGGTTGCAG+AGG | - | chr1_4:41572730-41572749 | None:intergenic | 40.0% | |
| GTATGTGTCTGTGCTTTCAT+AGG | - | chr1_4:41572870-41572889 | None:intergenic | 40.0% | |
| ATACAGACACCGACAATACA+CGG | + | chr1_4:41572886-41572905 | Msa0163420:intron | 40.0% | |
| TATGAAGCACAGACACTCTT+TGG | - | chr1_4:41573014-41573033 | None:intergenic | 40.0% | |
| !! | AAAGAGTGTCTGTGCTTCAT+AGG | + | chr1_4:41573013-41573032 | Msa0163420:intron | 40.0% |
| AACTGCAGGAAAAAGAAGTG+TGG | + | chr1_4:41573209-41573228 | Msa0163420:CDS | 40.0% | |
| CTCAACTGCAAGATGATGTA+TGG | - | chr1_4:41573338-41573357 | None:intergenic | 40.0% | |
| CATACATCATCTTGCAGTTG+AGG | + | chr1_4:41573336-41573355 | Msa0163420:intron | 40.0% | |
| ! | TGATGTTGTTGTTCTCGTGT+GGG | + | chr1_4:41573390-41573409 | Msa0163420:three_prime_UTR | 40.0% |
| ATTGCGAAACGTGAAGAAAG+GGG | - | chr1_4:41572207-41572226 | None:intergenic | 40.0% | |
| GAATTGCGAAACGTGAAGAA+AGG | - | chr1_4:41572209-41572228 | None:intergenic | 40.0% | |
| AGTAATCGTCTTCCCTGTTA+GGG | - | chr1_4:41572290-41572309 | None:intergenic | 40.0% | |
| GCCAAGATTCAAGACAAAGA+AGG | + | chr1_4:41572349-41572368 | Msa0163420:CDS | 40.0% | |
| AAAATCAAACGCTGCTGATC+TGG | - | chr1_4:41572452-41572471 | None:intergenic | 40.0% | |
| CTACATTGCATCTTGTGCTT+AGG | + | chr1_4:41572620-41572639 | Msa0163420:CDS | 40.0% | |
| AAAAAAGGTGAAGGTTGCAG+AGG | - | chr1_4:41572730-41572749 | None:intergenic | 40.0% | |
| GTATGTGTCTGTGCTTTCAT+AGG | - | chr1_4:41572870-41572889 | None:intergenic | 40.0% | |
| ATACAGACACCGACAATACA+CGG | + | chr1_4:41572886-41572905 | Msa0163420:intron | 40.0% | |
| TATGAAGCACAGACACTCTT+TGG | - | chr1_4:41573014-41573033 | None:intergenic | 40.0% | |
| !! | AAAGAGTGTCTGTGCTTCAT+AGG | + | chr1_4:41573013-41573032 | Msa0163420:intron | 40.0% |
| AACTGCAGGAAAAAGAAGTG+TGG | + | chr1_4:41573209-41573228 | Msa0163420:CDS | 40.0% | |
| CTCAACTGCAAGATGATGTA+TGG | - | chr1_4:41573338-41573357 | None:intergenic | 40.0% | |
| CATACATCATCTTGCAGTTG+AGG | + | chr1_4:41573336-41573355 | Msa0163420:intron | 40.0% | |
| ! | TGATGTTGTTGTTCTCGTGT+GGG | + | chr1_4:41573390-41573409 | Msa0163420:three_prime_UTR | 40.0% |
| GAGTAATCGTCTTCCCTGTT+AGG | - | chr1_4:41572291-41572310 | None:intergenic | 45.0% | |
| !! | CTTGGCTTTGACATTGTCGA+TGG | - | chr1_4:41572335-41572354 | None:intergenic | 45.0% |
| !! | CAGCAGCGTTTGATTTTTGC+TGG | + | chr1_4:41572455-41572474 | Msa0163420:CDS | 45.0% |
| GCTGGAAAACAGCTTGAAGA+TGG | + | chr1_4:41572473-41572492 | Msa0163420:CDS | 45.0% | |
| CTAGCCAAAGCCATCAAAGA+AGG | - | chr1_4:41572667-41572686 | None:intergenic | 45.0% | |
| !! | CTTCTTTGATGGCTTTGGCT+AGG | + | chr1_4:41572665-41572684 | Msa0163420:CDS | 45.0% |
| GTTGCAGAGGAACATACTTG+CGG | - | chr1_4:41572717-41572736 | None:intergenic | 45.0% | |
| ! | TGTTGGTGTCCGTGTATTGT+CGG | - | chr1_4:41572898-41572917 | None:intergenic | 45.0% |
| ! | TCTTTGGATTAGGTGTGTCC+CGG | - | chr1_4:41572998-41573017 | None:intergenic | 45.0% |
| GCACAGACACTCTTTGGATT+AGG | - | chr1_4:41573008-41573027 | None:intergenic | 45.0% | |
| GAAGTGTGGTCACAGTAATC+AGG | + | chr1_4:41573223-41573242 | Msa0163420:CDS | 45.0% | |
| ! | GTGTGACTGATTTCCACTCT+AGG | + | chr1_4:41573245-41573264 | Msa0163420:intron | 45.0% |
| ! | CTGATGTTGTTGTTCTCGTG+TGG | + | chr1_4:41573389-41573408 | Msa0163420:three_prime_UTR | 45.0% |
| ! | GATGTTGTTGTTCTCGTGTG+GGG | + | chr1_4:41573391-41573410 | Msa0163420:three_prime_UTR | 45.0% |
| GAGTAATCGTCTTCCCTGTT+AGG | - | chr1_4:41572291-41572310 | None:intergenic | 45.0% | |
| !! | CTTGGCTTTGACATTGTCGA+TGG | - | chr1_4:41572335-41572354 | None:intergenic | 45.0% |
| !! | CAGCAGCGTTTGATTTTTGC+TGG | + | chr1_4:41572455-41572474 | Msa0163420:CDS | 45.0% |
| GCTGGAAAACAGCTTGAAGA+TGG | + | chr1_4:41572473-41572492 | Msa0163420:CDS | 45.0% | |
| CTAGCCAAAGCCATCAAAGA+AGG | - | chr1_4:41572667-41572686 | None:intergenic | 45.0% | |
| !! | CTTCTTTGATGGCTTTGGCT+AGG | + | chr1_4:41572665-41572684 | Msa0163420:CDS | 45.0% |
| GTTGCAGAGGAACATACTTG+CGG | - | chr1_4:41572717-41572736 | None:intergenic | 45.0% | |
| ! | TGTTGGTGTCCGTGTATTGT+CGG | - | chr1_4:41572898-41572917 | None:intergenic | 45.0% |
| ! | TCTTTGGATTAGGTGTGTCC+CGG | - | chr1_4:41572998-41573017 | None:intergenic | 45.0% |
| GCACAGACACTCTTTGGATT+AGG | - | chr1_4:41573008-41573027 | None:intergenic | 45.0% | |
| GAAGTGTGGTCACAGTAATC+AGG | + | chr1_4:41573223-41573242 | Msa0163420:CDS | 45.0% | |
| ! | GTGTGACTGATTTCCACTCT+AGG | + | chr1_4:41573245-41573264 | Msa0163420:intron | 45.0% |
| ! | CTGATGTTGTTGTTCTCGTG+TGG | + | chr1_4:41573389-41573408 | Msa0163420:three_prime_UTR | 45.0% |
| ! | GATGTTGTTGTTCTCGTGTG+GGG | + | chr1_4:41573391-41573410 | Msa0163420:three_prime_UTR | 45.0% |
| !!! | AAATTTTAATTTTGATTTAT+TGG | + | chr1_4:41572577-41572596 | Msa0163420:intron | 5.0% |
| !! | CAAAAAATAAAAAATAAAAA+AGG | - | chr1_4:41572745-41572764 | None:intergenic | 5.0% |
| !!! | AAATTTTAATTTTGATTTAT+TGG | + | chr1_4:41572577-41572596 | Msa0163420:intron | 5.0% |
| !! | CAAAAAATAAAAAATAAAAA+AGG | - | chr1_4:41572745-41572764 | None:intergenic | 5.0% |
| TCAAACGCTGCTGATCTGGT+GGG | - | chr1_4:41572448-41572467 | None:intergenic | 50.0% | |
| ATCAAACGCTGCTGATCTGG+TGG | - | chr1_4:41572449-41572468 | None:intergenic | 50.0% | |
| CATCTTGTGCTTAGGCTTCG+TGG | + | chr1_4:41572628-41572647 | Msa0163420:CDS | 50.0% | |
| ! | CGAGCCTTCTTTGATGGCTT+TGG | + | chr1_4:41572660-41572679 | Msa0163420:CDS | 50.0% |
| AGGAACATACTTGCGGCAGA+TGG | - | chr1_4:41572710-41572729 | None:intergenic | 50.0% | |
| GAAAGTTAGAGGGTCGTCAG+TGG | + | chr1_4:41573088-41573107 | Msa0163420:intron | 50.0% | |
| CTATGCTCGTCTGCATCCAA+GGG | + | chr1_4:41573181-41573200 | Msa0163420:CDS | 50.0% | |
| TCAAACGCTGCTGATCTGGT+GGG | - | chr1_4:41572448-41572467 | None:intergenic | 50.0% | |
| ATCAAACGCTGCTGATCTGG+TGG | - | chr1_4:41572449-41572468 | None:intergenic | 50.0% | |
| CATCTTGTGCTTAGGCTTCG+TGG | + | chr1_4:41572628-41572647 | Msa0163420:CDS | 50.0% | |
| ! | CGAGCCTTCTTTGATGGCTT+TGG | + | chr1_4:41572660-41572679 | Msa0163420:CDS | 50.0% |
| AGGAACATACTTGCGGCAGA+TGG | - | chr1_4:41572710-41572729 | None:intergenic | 50.0% | |
| GAAAGTTAGAGGGTCGTCAG+TGG | + | chr1_4:41573088-41573107 | Msa0163420:intron | 50.0% | |
| CTATGCTCGTCTGCATCCAA+GGG | + | chr1_4:41573181-41573200 | Msa0163420:CDS | 50.0% | |
| TGCTGATCTGGTGGGATACC+TGG | - | chr1_4:41572440-41572459 | None:intergenic | 55.0% | |
| CTTGTGCTTAGGCTTCGTGG+TGG | + | chr1_4:41572631-41572650 | Msa0163420:CDS | 55.0% | |
| CACCGACGTGTATCCATCAC+CGG | + | chr1_4:41572976-41572995 | Msa0163420:intron | 55.0% | |
| ACCGACGTGTATCCATCACC+GGG | + | chr1_4:41572977-41572996 | Msa0163420:intron | 55.0% | |
| !! | TCCCGGTGATGGATACACGT+CGG | - | chr1_4:41572981-41573000 | None:intergenic | 55.0% |
| GATTAGGTGTGTCCCGGTGA+TGG | - | chr1_4:41572992-41573011 | None:intergenic | 55.0% | |
| GCTATGCTCGTCTGCATCCA+AGG | + | chr1_4:41573180-41573199 | Msa0163420:CDS | 55.0% | |
| ATCCAAGGGCTGTGAACTGC+AGG | + | chr1_4:41573195-41573214 | Msa0163420:CDS | 55.0% | |
| TTCCTGCAGTTCACAGCCCT+TGG | - | chr1_4:41573200-41573219 | None:intergenic | 55.0% | |
| ! | GTTGTTGTTCTCGTGTGGGG+TGG | + | chr1_4:41573394-41573413 | Msa0163420:three_prime_UTR | 55.0% |
| TGCTGATCTGGTGGGATACC+TGG | - | chr1_4:41572440-41572459 | None:intergenic | 55.0% | |
| CTTGTGCTTAGGCTTCGTGG+TGG | + | chr1_4:41572631-41572650 | Msa0163420:CDS | 55.0% | |
| CACCGACGTGTATCCATCAC+CGG | + | chr1_4:41572976-41572995 | Msa0163420:intron | 55.0% | |
| ACCGACGTGTATCCATCACC+GGG | + | chr1_4:41572977-41572996 | Msa0163420:intron | 55.0% | |
| !! | TCCCGGTGATGGATACACGT+CGG | - | chr1_4:41572981-41573000 | None:intergenic | 55.0% |
| GATTAGGTGTGTCCCGGTGA+TGG | - | chr1_4:41572992-41573011 | None:intergenic | 55.0% | |
| GCTATGCTCGTCTGCATCCA+AGG | + | chr1_4:41573180-41573199 | Msa0163420:CDS | 55.0% | |
| ATCCAAGGGCTGTGAACTGC+AGG | + | chr1_4:41573195-41573214 | Msa0163420:CDS | 55.0% | |
| TTCCTGCAGTTCACAGCCCT+TGG | - | chr1_4:41573200-41573219 | None:intergenic | 55.0% | |
| ! | GTTGTTGTTCTCGTGTGGGG+TGG | + | chr1_4:41573394-41573413 | Msa0163420:three_prime_UTR | 55.0% |
| TCTCGTGTGGGGTGGTGAGC+TGG | + | chr1_4:41573402-41573421 | Msa0163420:three_prime_UTR | 65.0% | |
| TCTCGTGTGGGGTGGTGAGC+TGG | + | chr1_4:41573402-41573421 | Msa0163420:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 41572142 | 41573685 | 41572142 | ID=Msa0163420;Name=Msa0163420 |
| chr1_4 | mRNA | 41572142 | 41573685 | 41572142 | ID=Msa0163420-mRNA-1;Parent=Msa0163420;Name=Msa0163420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=126|1|1|1|1|1|5|306|128 |
| chr1_4 | exon | 41572142 | 41572370 | 41572142 | ID=Msa0163420-mRNA-1:exon:11933;Parent=Msa0163420-mRNA-1 |
| chr1_4 | exon | 41572441 | 41572527 | 41572441 | ID=Msa0163420-mRNA-1:exon:11934;Parent=Msa0163420-mRNA-1 |
| chr1_4 | exon | 41572617 | 41572719 | 41572617 | ID=Msa0163420-mRNA-1:exon:11935;Parent=Msa0163420-mRNA-1 |
| chr1_4 | exon | 41573178 | 41573244 | 41573178 | ID=Msa0163420-mRNA-1:exon:11936;Parent=Msa0163420-mRNA-1 |
| chr1_4 | exon | 41573353 | 41573685 | 41573353 | ID=Msa0163420-mRNA-1:exon:11937;Parent=Msa0163420-mRNA-1 |
| chr1_4 | five_prime_UTR | 41572142 | 41572267 | 41572142 | ID=Msa0163420-mRNA-1:five_prime_utr;Parent=Msa0163420-mRNA-1 |
| chr1_4 | CDS | 41572268 | 41572370 | 41572268 | ID=Msa0163420-mRNA-1:cds;Parent=Msa0163420-mRNA-1 |
| chr1_4 | CDS | 41572441 | 41572527 | 41572441 | ID=Msa0163420-mRNA-1:cds;Parent=Msa0163420-mRNA-1 |
| chr1_4 | CDS | 41572617 | 41572719 | 41572617 | ID=Msa0163420-mRNA-1:cds;Parent=Msa0163420-mRNA-1 |
| chr1_4 | CDS | 41573178 | 41573244 | 41573178 | ID=Msa0163420-mRNA-1:cds;Parent=Msa0163420-mRNA-1 |
| chr1_4 | CDS | 41573353 | 41573379 | 41573353 | ID=Msa0163420-mRNA-1:cds;Parent=Msa0163420-mRNA-1 |
| chr1_4 | three_prime_UTR | 41573380 | 41573685 | 41573380 | ID=Msa0163420-mRNA-1:three_prime_utr;Parent=Msa0163420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
