AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0395820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0395820 MtrunA17_Chr3g0081741 99.301 143 1 0 1 143 1 143 1.52e-105 297
Msa0395820 MtrunA17_Chr8g0353881 88.811 143 16 0 1 143 1 143 1.29e-97 277
Msa0395820 MtrunA17_Chr3g0081771 83.333 84 12 1 60 143 10 91 5.74e-44 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0395820 AT5G61170.1 83.099 142 24 0 1 142 1 142 1.35e-90 259
Msa0395820 AT3G02080.1 81.119 143 27 0 1 143 1 143 1.41e-90 259
Msa0395820 AT5G15520.1 83.453 139 23 0 1 139 1 139 9.55e-89 254

Find 66 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAAAGCACAACTGAATT+AGG 0.152804 3_2:-12955624 None:intergenic
TGTGAAGACTGCAAGGTTTA+AGG 0.181111 3_2:+12956701 Msa0395820:CDS
GATCCAGATCCAATAGAAAT+TGG 0.232226 3_2:+12955547 None:intergenic
GGTGCATTCCAGAGGATTTA+TGG 0.279212 3_2:+12956929 Msa0395820:CDS
AAGCAAATGCTAGTTGTAAC+TGG 0.290090 3_2:-12957682 None:intergenic
TTCCAGTGGCAGGAGGGATT+TGG 0.312675 3_2:+12957371 Msa0395820:CDS
CACAAAGCACAACTGAATTA+GGG 0.332745 3_2:-12955623 None:intergenic
TTCACAATATCTGTCCATTC+TGG 0.341460 3_2:-12956684 None:intergenic
AGGGATTTGGACCAAGTTGC+TGG 0.349640 3_2:+12957384 Msa0395820:CDS
CCTTGGTGTCCATCTCAATA+AGG 0.385015 3_2:-12957045 None:intergenic
GACTGCAAGGTTTAAGGAGT+TGG 0.416477 3_2:+12956707 Msa0395820:CDS
GTCCAAATCCCTCCTGCCAC+TGG 0.442468 3_2:-12957373 None:intergenic
GGCTTCCACCATAAATCCTC+TGG 0.445267 3_2:-12956937 None:intergenic
ATCCAATAGAAATTGGGTTC+GGG 0.448247 3_2:+12955554 None:intergenic
GATCCAATAGAAATTGGGTT+CGG 0.451204 3_2:+12955553 None:intergenic
ATCTACTTGAGGGGAGGACT+CGG 0.467280 3_2:+12956902 Msa0395820:CDS
GTGGGCGACTGCCATTCCTC+TGG 0.472369 3_2:-12956958 None:intergenic
TCCGCTCATCTCAAAAGATC+TGG 0.478500 3_2:+12955744 Msa0395820:CDS
AACAATGCAAGACGGTTGAT+AGG 0.483949 3_2:-12957640 None:intergenic
ATCCAGATCCAATAGAAATT+GGG 0.485904 3_2:+12955548 None:intergenic
TAGTACCAGTCAGGATCATA+AGG 0.495779 3_2:-12956732 None:intergenic
ACAAAACTCAACACAGATCA+AGG 0.498569 3_2:-12957423 None:intergenic
GGCAAGGAAGATCTACTTGA+GGG 0.515831 3_2:+12956892 Msa0395820:CDS
GGAAGATCACTTCCAGTGGC+AGG 0.522712 3_2:+12957361 Msa0395820:CDS
AACAGTCCTTGCGGTAGCCA+TGG 0.523894 3_2:-12955685 None:intergenic
AGCTCGAGCAAGCAAAGCAG+CGG 0.528430 3_2:+12955657 Msa0395820:five_prime_UTR
GTGGCATTATCAAGCATGAA+TGG 0.528918 3_2:+12957718 Msa0395820:three_prime_UTR
TAACAATACGTCCAGCAACT+TGG 0.533492 3_2:-12957395 None:intergenic
TGGCTCCTTATGATCCTGAC+TGG 0.535240 3_2:+12956727 Msa0395820:CDS
TCTGAAATGTGATGCTGTGA+GGG 0.536205 3_2:-12955598 None:intergenic
AACAGATGGAGCTTCCAGAA+TGG 0.539990 3_2:+12956670 Msa0395820:intron
CAAGTAGATCTTCCTTGCCA+TGG 0.547859 3_2:-12956888 None:intergenic
TGCTCTTGCAGAAATGTGGT+GGG 0.558681 3_2:-12956976 None:intergenic
GAACATGAACCTTATTGAGA+TGG 0.561257 3_2:+12957036 Msa0395820:CDS
GACTGGTACTATGTCAGAGC+TGG 0.561645 3_2:+12956744 Msa0395820:CDS
TTGAGGGGAGGACTCGGTGT+TGG 0.561727 3_2:+12956908 Msa0395820:CDS
GCTCTGACATAGTACCAGTC+AGG 0.562653 3_2:-12956741 None:intergenic
CTGCTCTTGCAGAAATGTGG+TGG 0.566836 3_2:-12956977 None:intergenic
TTGAAGAATGTGACGAGCAA+TGG 0.567297 3_2:-12957005 None:intergenic
GTGCTGCAGCTTCCATGGCA+AGG 0.568905 3_2:+12956876 Msa0395820:intron
TTGCTTATTAACAAATCATG+TGG 0.573906 3_2:+12957699 Msa0395820:three_prime_UTR
CTGAAATGTGATGCTGTGAG+GGG 0.578144 3_2:-12955597 None:intergenic
TTCTGAAATGTGATGCTGTG+AGG 0.587211 3_2:-12955599 None:intergenic
AGCAAATGCTAGTTGTAACT+GGG 0.588462 3_2:-12957681 None:intergenic
CCACATTTCTGCAAGAGCAG+TGG 0.597531 3_2:+12956980 Msa0395820:CDS
CCACTGCTCTTGCAGAAATG+TGG 0.600910 3_2:-12956980 None:intergenic
TCGGTGTTGGTGCATTCCAG+AGG 0.603387 3_2:+12956921 Msa0395820:CDS
TATGGTGGAAGCCAGAGGAA+TGG 0.608896 3_2:+12956947 Msa0395820:CDS
AGATCACTTCCAGTGGCAGG+AGG 0.615298 3_2:+12957364 Msa0395820:CDS
CAGATATTGTGAAGACTGCA+AGG 0.617924 3_2:+12956694 Msa0395820:CDS
TCATCTCAAAAGATCTGGCA+AGG 0.619269 3_2:+12955749 Msa0395820:CDS
GCAAAGCAGCGGCACAACCA+TGG 0.626448 3_2:+12955668 Msa0395820:exon
GCACAACCATGGCTACCGCA+AGG 0.635383 3_2:+12955679 Msa0395820:exon
TGGCAAGGAAGATCTACTTG+AGG 0.640127 3_2:+12956891 Msa0395820:CDS
GGATTTATGGTGGAAGCCAG+AGG 0.643091 3_2:+12956942 Msa0395820:CDS
GATCACTTCCAGTGGCAGGA+GGG 0.646734 3_2:+12957365 Msa0395820:CDS
CTTATTGAGATGGACACCAA+GGG 0.649426 3_2:+12957046 Msa0395820:CDS
GGCAGGAAGATCACTTCCAG+TGG 0.650796 3_2:+12957357 Msa0395820:CDS
GTTGTGCTTTGTGAGTAGAG+AGG 0.652682 3_2:+12955633 Msa0395820:five_prime_UTR
AGGAAGATCTACTTGAGGGG+AGG 0.656289 3_2:+12956896 Msa0395820:CDS
CCTTATTGAGATGGACACCA+AGG 0.671459 3_2:+12957045 Msa0395820:CDS
GAAGATATAACAATGCAAGA+CGG 0.672901 3_2:-12957648 None:intergenic
GCATTCCAGAGGATTTATGG+TGG 0.673361 3_2:+12956932 Msa0395820:CDS
AACATCTTGAACAGTCCTTG+CGG 0.675305 3_2:-12955694 None:intergenic
GCAAGGAAGATCTACTTGAG+GGG 0.688321 3_2:+12956893 Msa0395820:CDS
TTATTGAGATGGACACCAAG+GGG 0.704884 3_2:+12957047 Msa0395820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAATTAAAAAGAAATTT+TGG - chr3_2:12955788-12955807 None:intergenic 10.0%
!!! TTGTTTCTTTTAATTAAATT+AGG + chr3_2:12956266-12956285 Msa0395820:intron 10.0%
!!! GAAAAATTAAAAAGAAATTT+TGG - chr3_2:12955788-12955807 None:intergenic 10.0%
!!! TTGTTTCTTTTAATTAAATT+AGG + chr3_2:12956266-12956285 Msa0395820:intron 10.0%
!! TTAAATGTTATGTTTAATGT+TGG + chr3_2:12955970-12955989 Msa0395820:intron 15.0%
!! TAAATGTTATGTTTAATGTT+GGG + chr3_2:12955971-12955990 Msa0395820:intron 15.0%
!!! AAATATGTATTTGATTTGAT+TGG + chr3_2:12956075-12956094 Msa0395820:intron 15.0%
!! TGGATTAATAAATAGATAAA+TGG + chr3_2:12956095-12956114 Msa0395820:intron 15.0%
!!! ATTTTAAGTTCAAAATTAGT+TGG + chr3_2:12956597-12956616 Msa0395820:intron 15.0%
!!! TTACTTATGTAATTTTCAAA+AGG + chr3_2:12956806-12956825 Msa0395820:intron 15.0%
!!! ATAAATTTGTTGTTGATAAT+GGG + chr3_2:12956840-12956859 Msa0395820:intron 15.0%
!!! TTAACAAACAAGAATTTTAA+GGG - chr3_2:12957600-12957619 None:intergenic 15.0%
!! TTAAATGTTATGTTTAATGT+TGG + chr3_2:12955970-12955989 Msa0395820:intron 15.0%
!! TAAATGTTATGTTTAATGTT+GGG + chr3_2:12955971-12955990 Msa0395820:intron 15.0%
!!! AAATATGTATTTGATTTGAT+TGG + chr3_2:12956075-12956094 Msa0395820:intron 15.0%
!! TGGATTAATAAATAGATAAA+TGG + chr3_2:12956095-12956114 Msa0395820:intron 15.0%
!!! ATTTTAAGTTCAAAATTAGT+TGG + chr3_2:12956597-12956616 Msa0395820:intron 15.0%
!!! TTACTTATGTAATTTTCAAA+AGG + chr3_2:12956806-12956825 Msa0395820:intron 15.0%
!!! ATAAATTTGTTGTTGATAAT+GGG + chr3_2:12956840-12956859 Msa0395820:intron 15.0%
!!! TTAACAAACAAGAATTTTAA+GGG - chr3_2:12957600-12957619 None:intergenic 15.0%
!!! TTTTTATCTTACACTTGTTT+TGG + chr3_2:12956208-12956227 Msa0395820:intron 20.0%
!! GTTTAATGCTATGAATAAAA+TGG + chr3_2:12956321-12956340 Msa0395820:intron 20.0%
!!! AATGAATTTTGAAAGTTCAA+TGG - chr3_2:12956365-12956384 None:intergenic 20.0%
!! TATTCAAACTCTACTATAAA+TGG + chr3_2:12956533-12956552 Msa0395820:intron 20.0%
!!! CTTATTTTGTTATAAACAGA+TGG + chr3_2:12956656-12956675 Msa0395820:intron 20.0%
!!! GATAAATTTGTTGTTGATAA+TGG + chr3_2:12956839-12956858 Msa0395820:intron 20.0%
!!! TAACTATTTGATTTACATTG+CGG - chr3_2:12957167-12957186 None:intergenic 20.0%
!! AAAAACCAATGTTAAAAACA+TGG - chr3_2:12957325-12957344 None:intergenic 20.0%
!!! ATTTTATTCACTGGAATTTT+TGG + chr3_2:12957567-12957586 Msa0395820:three_prime_UTR 20.0%
!!! CTTAACAAACAAGAATTTTA+AGG - chr3_2:12957601-12957620 None:intergenic 20.0%
!!! TTTTTATCTTACACTTGTTT+TGG + chr3_2:12956208-12956227 Msa0395820:intron 20.0%
!! GTTTAATGCTATGAATAAAA+TGG + chr3_2:12956321-12956340 Msa0395820:intron 20.0%
!!! AATGAATTTTGAAAGTTCAA+TGG - chr3_2:12956365-12956384 None:intergenic 20.0%
!! TATTCAAACTCTACTATAAA+TGG + chr3_2:12956533-12956552 Msa0395820:intron 20.0%
!!! CTTATTTTGTTATAAACAGA+TGG + chr3_2:12956656-12956675 Msa0395820:intron 20.0%
!!! GATAAATTTGTTGTTGATAA+TGG + chr3_2:12956839-12956858 Msa0395820:intron 20.0%
!!! TAACTATTTGATTTACATTG+CGG - chr3_2:12957167-12957186 None:intergenic 20.0%
!! AAAAACCAATGTTAAAAACA+TGG - chr3_2:12957325-12957344 None:intergenic 20.0%
!!! ATTTTATTCACTGGAATTTT+TGG + chr3_2:12957567-12957586 Msa0395820:three_prime_UTR 20.0%
!!! CTTAACAAACAAGAATTTTA+AGG - chr3_2:12957601-12957620 None:intergenic 20.0%
! TTATGTTTAATGTTGGGTTT+GGG + chr3_2:12955977-12955996 Msa0395820:intron 25.0%
! GAACTTTCAAAATTCATTGT+TGG + chr3_2:12956367-12956386 Msa0395820:intron 25.0%
! TTCTAATTACATAGATTACG+TGG + chr3_2:12956397-12956416 Msa0395820:intron 25.0%
! TTATGTATTCAAACTCTACT+TGG + chr3_2:12956477-12956496 Msa0395820:intron 25.0%
!!! GTGCTTTTATTTATAGTGAT+TGG + chr3_2:12957253-12957272 Msa0395820:intron 25.0%
! TGTTAAAAACATGGTATGAA+GGG - chr3_2:12957316-12957335 None:intergenic 25.0%
! ATGTTAAAAACATGGTATGA+AGG - chr3_2:12957317-12957336 None:intergenic 25.0%
!!! TCATACCATGTTTTTAACAT+TGG + chr3_2:12957317-12957336 Msa0395820:intron 25.0%
! TTGCTTATTAACAAATCATG+TGG + chr3_2:12957699-12957718 Msa0395820:three_prime_UTR 25.0%
! TTATGTTTAATGTTGGGTTT+GGG + chr3_2:12955977-12955996 Msa0395820:intron 25.0%
! GAACTTTCAAAATTCATTGT+TGG + chr3_2:12956367-12956386 Msa0395820:intron 25.0%
! TTCTAATTACATAGATTACG+TGG + chr3_2:12956397-12956416 Msa0395820:intron 25.0%
! TTATGTATTCAAACTCTACT+TGG + chr3_2:12956477-12956496 Msa0395820:intron 25.0%
!!! GTGCTTTTATTTATAGTGAT+TGG + chr3_2:12957253-12957272 Msa0395820:intron 25.0%
! TGTTAAAAACATGGTATGAA+GGG - chr3_2:12957316-12957335 None:intergenic 25.0%
! ATGTTAAAAACATGGTATGA+AGG - chr3_2:12957317-12957336 None:intergenic 25.0%
!!! TCATACCATGTTTTTAACAT+TGG + chr3_2:12957317-12957336 Msa0395820:intron 25.0%
! TTGCTTATTAACAAATCATG+TGG + chr3_2:12957699-12957718 Msa0395820:three_prime_UTR 25.0%
!!! TAATTCGACTCGTTTTGATT+TGG + chr3_2:12955831-12955850 Msa0395820:intron 30.0%
!!! ACTCGTTTTGATTTGGTTTA+TGG + chr3_2:12955838-12955857 Msa0395820:intron 30.0%
!!! CTCGTTTTGATTTGGTTTAT+GGG + chr3_2:12955839-12955858 Msa0395820:intron 30.0%
TGGTTGAATTAATCTGTTGT+AGG + chr3_2:12955872-12955891 Msa0395820:intron 30.0%
GTTATGTTTAATGTTGGGTT+TGG + chr3_2:12955976-12955995 Msa0395820:intron 30.0%
AATGGACATTTCAATTACAC+AGG - chr3_2:12956347-12956366 None:intergenic 30.0%
! CTCATTTGTTTGCTTAGTTT+TGG + chr3_2:12956426-12956445 Msa0395820:intron 30.0%
CTGCATATAGAACTTCAAAA+AGG - chr3_2:12956576-12956595 None:intergenic 30.0%
!! TTGGTTTTTCTTTATCACAG+TGG + chr3_2:12957336-12957355 Msa0395820:intron 30.0%
! TCTTGTCACATTTTATTCAC+TGG + chr3_2:12957558-12957577 Msa0395820:three_prime_UTR 30.0%
GAAGATATAACAATGCAAGA+CGG - chr3_2:12957651-12957670 None:intergenic 30.0%
!!! TAATTCGACTCGTTTTGATT+TGG + chr3_2:12955831-12955850 Msa0395820:intron 30.0%
!!! ACTCGTTTTGATTTGGTTTA+TGG + chr3_2:12955838-12955857 Msa0395820:intron 30.0%
!!! CTCGTTTTGATTTGGTTTAT+GGG + chr3_2:12955839-12955858 Msa0395820:intron 30.0%
TGGTTGAATTAATCTGTTGT+AGG + chr3_2:12955872-12955891 Msa0395820:intron 30.0%
GTTATGTTTAATGTTGGGTT+TGG + chr3_2:12955976-12955995 Msa0395820:intron 30.0%
AATGGACATTTCAATTACAC+AGG - chr3_2:12956347-12956366 None:intergenic 30.0%
! CTCATTTGTTTGCTTAGTTT+TGG + chr3_2:12956426-12956445 Msa0395820:intron 30.0%
CTGCATATAGAACTTCAAAA+AGG - chr3_2:12956576-12956595 None:intergenic 30.0%
!! TTGGTTTTTCTTTATCACAG+TGG + chr3_2:12957336-12957355 Msa0395820:intron 30.0%
! TCTTGTCACATTTTATTCAC+TGG + chr3_2:12957558-12957577 Msa0395820:three_prime_UTR 30.0%
GAAGATATAACAATGCAAGA+CGG - chr3_2:12957651-12957670 None:intergenic 30.0%
CACAAAGCACAACTGAATTA+GGG - chr3_2:12955626-12955645 None:intergenic 35.0%
TCACAAAGCACAACTGAATT+AGG - chr3_2:12955627-12955646 None:intergenic 35.0%
GGTTTATGGGTCATGAAATT+TGG + chr3_2:12955852-12955871 Msa0395820:intron 35.0%
TTCACAATATCTGTCCATTC+TGG - chr3_2:12956687-12956706 None:intergenic 35.0%
GAACATGAACCTTATTGAGA+TGG + chr3_2:12957036-12957055 Msa0395820:CDS 35.0%
ATAATGAGTTTCTTACCCCT+TGG - chr3_2:12957065-12957084 None:intergenic 35.0%
TACGGTTTACAATAGGGTAT+AGG + chr3_2:12957099-12957118 Msa0395820:intron 35.0%
ACGGTTTACAATAGGGTATA+GGG + chr3_2:12957100-12957119 Msa0395820:intron 35.0%
! TTTTTCTTTATCACAGTGGC+AGG + chr3_2:12957340-12957359 Msa0395820:intron 35.0%
ACAAAACTCAACACAGATCA+AGG - chr3_2:12957426-12957445 None:intergenic 35.0%
AGCAAATGCTAGTTGTAACT+GGG - chr3_2:12957684-12957703 None:intergenic 35.0%
AAGCAAATGCTAGTTGTAAC+TGG - chr3_2:12957685-12957704 None:intergenic 35.0%
CACAAAGCACAACTGAATTA+GGG - chr3_2:12955626-12955645 None:intergenic 35.0%
TCACAAAGCACAACTGAATT+AGG - chr3_2:12955627-12955646 None:intergenic 35.0%
GGTTTATGGGTCATGAAATT+TGG + chr3_2:12955852-12955871 Msa0395820:intron 35.0%
TTCACAATATCTGTCCATTC+TGG - chr3_2:12956687-12956706 None:intergenic 35.0%
GAACATGAACCTTATTGAGA+TGG + chr3_2:12957036-12957055 Msa0395820:CDS 35.0%
ATAATGAGTTTCTTACCCCT+TGG - chr3_2:12957065-12957084 None:intergenic 35.0%
TACGGTTTACAATAGGGTAT+AGG + chr3_2:12957099-12957118 Msa0395820:intron 35.0%
ACGGTTTACAATAGGGTATA+GGG + chr3_2:12957100-12957119 Msa0395820:intron 35.0%
! TTTTTCTTTATCACAGTGGC+AGG + chr3_2:12957340-12957359 Msa0395820:intron 35.0%
ACAAAACTCAACACAGATCA+AGG - chr3_2:12957426-12957445 None:intergenic 35.0%
AGCAAATGCTAGTTGTAACT+GGG - chr3_2:12957684-12957703 None:intergenic 35.0%
AAGCAAATGCTAGTTGTAAC+TGG - chr3_2:12957685-12957704 None:intergenic 35.0%
! TCTGAAATGTGATGCTGTGA+GGG - chr3_2:12955601-12955620 None:intergenic 40.0%
!! TTCTGAAATGTGATGCTGTG+AGG - chr3_2:12955602-12955621 None:intergenic 40.0%
AACATCTTGAACAGTCCTTG+CGG - chr3_2:12955697-12955716 None:intergenic 40.0%
TCATCTCAAAAGATCTGGCA+AGG + chr3_2:12955749-12955768 Msa0395820:CDS 40.0%
! GGACTGATTTCTGCATTGTA+TGG + chr3_2:12956287-12956306 Msa0395820:intron 40.0%
CAGATATTGTGAAGACTGCA+AGG + chr3_2:12956694-12956713 Msa0395820:CDS 40.0%
TGTGAAGACTGCAAGGTTTA+AGG + chr3_2:12956701-12956720 Msa0395820:CDS 40.0%
TAGTACCAGTCAGGATCATA+AGG - chr3_2:12956735-12956754 None:intergenic 40.0%
AATTGCACAAAAGCAAGCAC+AGG - chr3_2:12956781-12956800 None:intergenic 40.0%
!! GCTTGCTTTTGTGCAATTCA+TGG + chr3_2:12956783-12956802 Msa0395820:intron 40.0%
TTGAAGAATGTGACGAGCAA+TGG - chr3_2:12957008-12957027 None:intergenic 40.0%
CTTATTGAGATGGACACCAA+GGG + chr3_2:12957046-12957065 Msa0395820:CDS 40.0%
TTATTGAGATGGACACCAAG+GGG + chr3_2:12957047-12957066 Msa0395820:CDS 40.0%
! TTATCCTTGTTAGCCTGCTA+CGG + chr3_2:12957081-12957100 Msa0395820:intron 40.0%
TAACAATACGTCCAGCAACT+TGG - chr3_2:12957398-12957417 None:intergenic 40.0%
AACAATGCAAGACGGTTGAT+AGG - chr3_2:12957643-12957662 None:intergenic 40.0%
GTGGCATTATCAAGCATGAA+TGG + chr3_2:12957718-12957737 Msa0395820:three_prime_UTR 40.0%
! TCTGAAATGTGATGCTGTGA+GGG - chr3_2:12955601-12955620 None:intergenic 40.0%
!! TTCTGAAATGTGATGCTGTG+AGG - chr3_2:12955602-12955621 None:intergenic 40.0%
AACATCTTGAACAGTCCTTG+CGG - chr3_2:12955697-12955716 None:intergenic 40.0%
TCATCTCAAAAGATCTGGCA+AGG + chr3_2:12955749-12955768 Msa0395820:CDS 40.0%
! GGACTGATTTCTGCATTGTA+TGG + chr3_2:12956287-12956306 Msa0395820:intron 40.0%
CAGATATTGTGAAGACTGCA+AGG + chr3_2:12956694-12956713 Msa0395820:CDS 40.0%
TGTGAAGACTGCAAGGTTTA+AGG + chr3_2:12956701-12956720 Msa0395820:CDS 40.0%
TAGTACCAGTCAGGATCATA+AGG - chr3_2:12956735-12956754 None:intergenic 40.0%
AATTGCACAAAAGCAAGCAC+AGG - chr3_2:12956781-12956800 None:intergenic 40.0%
!! GCTTGCTTTTGTGCAATTCA+TGG + chr3_2:12956783-12956802 Msa0395820:intron 40.0%
TTGAAGAATGTGACGAGCAA+TGG - chr3_2:12957008-12957027 None:intergenic 40.0%
CTTATTGAGATGGACACCAA+GGG + chr3_2:12957046-12957065 Msa0395820:CDS 40.0%
TTATTGAGATGGACACCAAG+GGG + chr3_2:12957047-12957066 Msa0395820:CDS 40.0%
! TTATCCTTGTTAGCCTGCTA+CGG + chr3_2:12957081-12957100 Msa0395820:intron 40.0%
TAACAATACGTCCAGCAACT+TGG - chr3_2:12957398-12957417 None:intergenic 40.0%
AACAATGCAAGACGGTTGAT+AGG - chr3_2:12957643-12957662 None:intergenic 40.0%
GTGGCATTATCAAGCATGAA+TGG + chr3_2:12957718-12957737 Msa0395820:three_prime_UTR 40.0%
CTGAAATGTGATGCTGTGAG+GGG - chr3_2:12955600-12955619 None:intergenic 45.0%
GTTGTGCTTTGTGAGTAGAG+AGG + chr3_2:12955633-12955652 Msa0395820:five_prime_UTR 45.0%
TCCGCTCATCTCAAAAGATC+TGG + chr3_2:12955744-12955763 Msa0395820:CDS 45.0%
!!! GCCAGATCTTTTGAGATGAG+CGG - chr3_2:12955748-12955767 None:intergenic 45.0%
!!! CACTTGTTTTGGCTTAGTGC+TGG + chr3_2:12956219-12956238 Msa0395820:intron 45.0%
AACAGATGGAGCTTCCAGAA+TGG + chr3_2:12956670-12956689 Msa0395820:intron 45.0%
GACTGCAAGGTTTAAGGAGT+TGG + chr3_2:12956707-12956726 Msa0395820:CDS 45.0%
! TTTTTGTGCTGCAGCTTCCA+TGG + chr3_2:12956871-12956890 Msa0395820:intron 45.0%
CAAGTAGATCTTCCTTGCCA+TGG - chr3_2:12956891-12956910 None:intergenic 45.0%
TGGCAAGGAAGATCTACTTG+AGG + chr3_2:12956891-12956910 Msa0395820:CDS 45.0%
GGCAAGGAAGATCTACTTGA+GGG + chr3_2:12956892-12956911 Msa0395820:CDS 45.0%
GCAAGGAAGATCTACTTGAG+GGG + chr3_2:12956893-12956912 Msa0395820:CDS 45.0%
GGTGCATTCCAGAGGATTTA+TGG + chr3_2:12956929-12956948 Msa0395820:CDS 45.0%
GCATTCCAGAGGATTTATGG+TGG + chr3_2:12956932-12956951 Msa0395820:CDS 45.0%
TGCTCTTGCAGAAATGTGGT+GGG - chr3_2:12956979-12956998 None:intergenic 45.0%
!! CCTTGGTGTCCATCTCAATA+AGG - chr3_2:12957048-12957067 None:intergenic 45.0%
CCTTATTGAGATGGACACCA+AGG + chr3_2:12957045-12957064 Msa0395820:CDS 45.0%
TAAACCGTAGCAGGCTAACA+AGG - chr3_2:12957088-12957107 None:intergenic 45.0%
AGCCTGCTACGGTTTACAAT+AGG + chr3_2:12957092-12957111 Msa0395820:intron 45.0%
GCCTGCTACGGTTTACAATA+GGG + chr3_2:12957093-12957112 Msa0395820:intron 45.0%
ACCCTATTGTAAACCGTAGC+AGG - chr3_2:12957097-12957116 None:intergenic 45.0%
CTGAAATGTGATGCTGTGAG+GGG - chr3_2:12955600-12955619 None:intergenic 45.0%
GTTGTGCTTTGTGAGTAGAG+AGG + chr3_2:12955633-12955652 Msa0395820:five_prime_UTR 45.0%
TCCGCTCATCTCAAAAGATC+TGG + chr3_2:12955744-12955763 Msa0395820:CDS 45.0%
!!! GCCAGATCTTTTGAGATGAG+CGG - chr3_2:12955748-12955767 None:intergenic 45.0%
!!! CACTTGTTTTGGCTTAGTGC+TGG + chr3_2:12956219-12956238 Msa0395820:intron 45.0%
AACAGATGGAGCTTCCAGAA+TGG + chr3_2:12956670-12956689 Msa0395820:intron 45.0%
GACTGCAAGGTTTAAGGAGT+TGG + chr3_2:12956707-12956726 Msa0395820:CDS 45.0%
! TTTTTGTGCTGCAGCTTCCA+TGG + chr3_2:12956871-12956890 Msa0395820:intron 45.0%
CAAGTAGATCTTCCTTGCCA+TGG - chr3_2:12956891-12956910 None:intergenic 45.0%
TGGCAAGGAAGATCTACTTG+AGG + chr3_2:12956891-12956910 Msa0395820:CDS 45.0%
GGCAAGGAAGATCTACTTGA+GGG + chr3_2:12956892-12956911 Msa0395820:CDS 45.0%
GCAAGGAAGATCTACTTGAG+GGG + chr3_2:12956893-12956912 Msa0395820:CDS 45.0%
GGTGCATTCCAGAGGATTTA+TGG + chr3_2:12956929-12956948 Msa0395820:CDS 45.0%
GCATTCCAGAGGATTTATGG+TGG + chr3_2:12956932-12956951 Msa0395820:CDS 45.0%
TGCTCTTGCAGAAATGTGGT+GGG - chr3_2:12956979-12956998 None:intergenic 45.0%
!! CCTTGGTGTCCATCTCAATA+AGG - chr3_2:12957048-12957067 None:intergenic 45.0%
CCTTATTGAGATGGACACCA+AGG + chr3_2:12957045-12957064 Msa0395820:CDS 45.0%
TAAACCGTAGCAGGCTAACA+AGG - chr3_2:12957088-12957107 None:intergenic 45.0%
AGCCTGCTACGGTTTACAAT+AGG + chr3_2:12957092-12957111 Msa0395820:intron 45.0%
GCCTGCTACGGTTTACAATA+GGG + chr3_2:12957093-12957112 Msa0395820:intron 45.0%
ACCCTATTGTAAACCGTAGC+AGG - chr3_2:12957097-12957116 None:intergenic 45.0%
!!! AAAAATTAAAAAGAAATTTT+GGG - chr3_2:12955787-12955806 None:intergenic 5.0%
!!! AAAAATTAAAAAGAAATTTT+GGG - chr3_2:12955787-12955806 None:intergenic 5.0%
TGGCTCCTTATGATCCTGAC+TGG + chr3_2:12956727-12956746 Msa0395820:CDS 50.0%
GCTCTGACATAGTACCAGTC+AGG - chr3_2:12956744-12956763 None:intergenic 50.0%
GACTGGTACTATGTCAGAGC+TGG + chr3_2:12956744-12956763 Msa0395820:CDS 50.0%
AGGAAGATCTACTTGAGGGG+AGG + chr3_2:12956896-12956915 Msa0395820:CDS 50.0%
ATCTACTTGAGGGGAGGACT+CGG + chr3_2:12956902-12956921 Msa0395820:CDS 50.0%
GGCTTCCACCATAAATCCTC+TGG - chr3_2:12956940-12956959 None:intergenic 50.0%
! GGATTTATGGTGGAAGCCAG+AGG + chr3_2:12956942-12956961 Msa0395820:CDS 50.0%
! TATGGTGGAAGCCAGAGGAA+TGG + chr3_2:12956947-12956966 Msa0395820:CDS 50.0%
CTGCTCTTGCAGAAATGTGG+TGG - chr3_2:12956980-12956999 None:intergenic 50.0%
CCACTGCTCTTGCAGAAATG+TGG - chr3_2:12956983-12957002 None:intergenic 50.0%
CCACATTTCTGCAAGAGCAG+TGG + chr3_2:12956980-12956999 Msa0395820:CDS 50.0%
AGGGATTTGGACCAAGTTGC+TGG + chr3_2:12957384-12957403 Msa0395820:CDS 50.0%
TGGCTCCTTATGATCCTGAC+TGG + chr3_2:12956727-12956746 Msa0395820:CDS 50.0%
GCTCTGACATAGTACCAGTC+AGG - chr3_2:12956744-12956763 None:intergenic 50.0%
GACTGGTACTATGTCAGAGC+TGG + chr3_2:12956744-12956763 Msa0395820:CDS 50.0%
AGGAAGATCTACTTGAGGGG+AGG + chr3_2:12956896-12956915 Msa0395820:CDS 50.0%
ATCTACTTGAGGGGAGGACT+CGG + chr3_2:12956902-12956921 Msa0395820:CDS 50.0%
GGCTTCCACCATAAATCCTC+TGG - chr3_2:12956940-12956959 None:intergenic 50.0%
! GGATTTATGGTGGAAGCCAG+AGG + chr3_2:12956942-12956961 Msa0395820:CDS 50.0%
! TATGGTGGAAGCCAGAGGAA+TGG + chr3_2:12956947-12956966 Msa0395820:CDS 50.0%
CTGCTCTTGCAGAAATGTGG+TGG - chr3_2:12956980-12956999 None:intergenic 50.0%
CCACTGCTCTTGCAGAAATG+TGG - chr3_2:12956983-12957002 None:intergenic 50.0%
CCACATTTCTGCAAGAGCAG+TGG + chr3_2:12956980-12956999 Msa0395820:CDS 50.0%
AGGGATTTGGACCAAGTTGC+TGG + chr3_2:12957384-12957403 Msa0395820:CDS 50.0%
AGCTCGAGCAAGCAAAGCAG+CGG + chr3_2:12955657-12955676 Msa0395820:five_prime_UTR 55.0%
AACAGTCCTTGCGGTAGCCA+TGG - chr3_2:12955688-12955707 None:intergenic 55.0%
!! TCGGTGTTGGTGCATTCCAG+AGG + chr3_2:12956921-12956940 Msa0395820:CDS 55.0%
GGCAGGAAGATCACTTCCAG+TGG + chr3_2:12957357-12957376 Msa0395820:CDS 55.0%
GGAAGATCACTTCCAGTGGC+AGG + chr3_2:12957361-12957380 Msa0395820:CDS 55.0%
AGATCACTTCCAGTGGCAGG+AGG + chr3_2:12957364-12957383 Msa0395820:CDS 55.0%
GATCACTTCCAGTGGCAGGA+GGG + chr3_2:12957365-12957384 Msa0395820:CDS 55.0%
TTCCAGTGGCAGGAGGGATT+TGG + chr3_2:12957371-12957390 Msa0395820:CDS 55.0%
AGCTCGAGCAAGCAAAGCAG+CGG + chr3_2:12955657-12955676 Msa0395820:five_prime_UTR 55.0%
AACAGTCCTTGCGGTAGCCA+TGG - chr3_2:12955688-12955707 None:intergenic 55.0%
!! TCGGTGTTGGTGCATTCCAG+AGG + chr3_2:12956921-12956940 Msa0395820:CDS 55.0%
GGCAGGAAGATCACTTCCAG+TGG + chr3_2:12957357-12957376 Msa0395820:CDS 55.0%
GGAAGATCACTTCCAGTGGC+AGG + chr3_2:12957361-12957380 Msa0395820:CDS 55.0%
AGATCACTTCCAGTGGCAGG+AGG + chr3_2:12957364-12957383 Msa0395820:CDS 55.0%
GATCACTTCCAGTGGCAGGA+GGG + chr3_2:12957365-12957384 Msa0395820:CDS 55.0%
TTCCAGTGGCAGGAGGGATT+TGG + chr3_2:12957371-12957390 Msa0395820:CDS 55.0%
GCAAAGCAGCGGCACAACCA+TGG + chr3_2:12955668-12955687 Msa0395820:exon 60.0%
GCACAACCATGGCTACCGCA+AGG + chr3_2:12955679-12955698 Msa0395820:exon 60.0%
GTGCTGCAGCTTCCATGGCA+AGG + chr3_2:12956876-12956895 Msa0395820:intron 60.0%
!! TTGAGGGGAGGACTCGGTGT+TGG + chr3_2:12956908-12956927 Msa0395820:CDS 60.0%
GTCCAAATCCCTCCTGCCAC+TGG - chr3_2:12957376-12957395 None:intergenic 60.0%
GCAAAGCAGCGGCACAACCA+TGG + chr3_2:12955668-12955687 Msa0395820:exon 60.0%
GCACAACCATGGCTACCGCA+AGG + chr3_2:12955679-12955698 Msa0395820:exon 60.0%
GTGCTGCAGCTTCCATGGCA+AGG + chr3_2:12956876-12956895 Msa0395820:intron 60.0%
!! TTGAGGGGAGGACTCGGTGT+TGG + chr3_2:12956908-12956927 Msa0395820:CDS 60.0%
GTCCAAATCCCTCCTGCCAC+TGG - chr3_2:12957376-12957395 None:intergenic 60.0%
GTGGGCGACTGCCATTCCTC+TGG - chr3_2:12956961-12956980 None:intergenic 65.0%
GTGGGCGACTGCCATTCCTC+TGG - chr3_2:12956961-12956980 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 12955560 12957742 12955560 ID=Msa0395820;Name=Msa0395820
chr3_2 mRNA 12955560 12957742 12955560 ID=Msa0395820-mRNA-1;Parent=Msa0395820;Name=Msa0395820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=127|1|1|1|1|1|4|314|143
chr3_2 exon 12955560 12955770 12955560 ID=Msa0395820-mRNA-1:exon:3030;Parent=Msa0395820-mRNA-1
chr3_2 exon 12956675 12956765 12956675 ID=Msa0395820-mRNA-1:exon:3031;Parent=Msa0395820-mRNA-1
chr3_2 exon 12956885 12957068 12956885 ID=Msa0395820-mRNA-1:exon:3032;Parent=Msa0395820-mRNA-1
chr3_2 exon 12957356 12957742 12957356 ID=Msa0395820-mRNA-1:exon:3033;Parent=Msa0395820-mRNA-1
chr3_2 five_prime_UTR 12955560 12955686 12955560 ID=Msa0395820-mRNA-1:five_prime_utr;Parent=Msa0395820-mRNA-1
chr3_2 CDS 12955687 12955770 12955687 ID=Msa0395820-mRNA-1:cds;Parent=Msa0395820-mRNA-1
chr3_2 CDS 12956675 12956765 12956675 ID=Msa0395820-mRNA-1:cds;Parent=Msa0395820-mRNA-1
chr3_2 CDS 12956885 12957068 12956885 ID=Msa0395820-mRNA-1:cds;Parent=Msa0395820-mRNA-1
chr3_2 CDS 12957356 12957428 12957356 ID=Msa0395820-mRNA-1:cds;Parent=Msa0395820-mRNA-1
chr3_2 three_prime_UTR 12957429 12957742 12957429 ID=Msa0395820-mRNA-1:three_prime_utr;Parent=Msa0395820-mRNA-1
Gene Sequence

>Msa0395820

ATGGCTACCGCAAGGACTGTTCAAGATGTTTCTTCACACGAGTTTGTCAAAGCTTACTCCGCTCATCTCAAAAGATCTGGCAAGATGGAGCTTCCAGAATGGACAGATATTGTGAAGACTGCAAGGTTTAAGGAGTTGGCTCCTTATGATCCTGACTGGTACTATGTCAGAGCTGCTTCCATGGCAAGGAAGATCTACTTGAGGGGAGGACTCGGTGTTGGTGCATTCCAGAGGATTTATGGTGGAAGCCAGAGGAATGGCAGTCGCCCACCACATTTCTGCAAGAGCAGTGGTTCCATTGCTCGTCACATTCTTCAACAGTTGCAGAACATGAACCTTATTGAGATGGACACCAAGGGTGGCAGGAAGATCACTTCCAGTGGCAGGAGGGATTTGGACCAAGTTGCTGGACGTATTGTTATTGCACCTTGA

Protein sequence

>Msa0395820

MATARTVQDVSSHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIARHILQQLQNMNLIEMDTKGGRKITSSGRRDLDQVAGRIVIAP*