AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0299870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299870 MtrunA17_Chr1g0198561 88.435 294 21 1 1 281 1 294 0.0 532
Msa0299870 MtrunA17_Chr6g0450631 87.755 294 23 1 1 281 1 294 0.0 531
Msa0299870 MtrunA17_Chr2g0324401 98.113 106 2 0 176 281 1 106 2.26e-72 217
Msa0299870 MtrunA17_Chr3g0145851 40.097 207 105 7 49 238 58 262 4.17e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299870 AT3G17465.1 62.037 324 80 5 1 281 1 324 1.59e-133 381
Msa0299870 AT2G43030.1 41.520 171 97 3 70 238 92 261 1.84e-32 120

Find 98 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTCTTAACTTATTA+TGG 0.156094 2_3:+55103379 None:intergenic
TGGGGATGTGGATCCATTTA+TGG 0.158517 2_3:-55103797 Msa0299870:CDS
TGACTGCACTTTGGGATAAA+TGG 0.171985 2_3:-55105922 Msa0299870:CDS
TGTAGTATCTTAACAAATTT+TGG 0.194392 2_3:-55103516 Msa0299870:intron
TAAAGAGATAGTTCAGAAAA+TGG 0.216730 2_3:-55103766 Msa0299870:three_prime_UTR
CTTTAATCAGTAACCATAAA+TGG 0.233502 2_3:+55103784 None:intergenic
CCTTCACTGGTTAACTTCTA+AGG 0.234383 2_3:-55103635 Msa0299870:three_prime_UTR
GAGTTCCAATTTCTATCCTT+TGG 0.251026 2_3:-55105892 Msa0299870:CDS
AAGGTTGTTACTTTGAGATT+TGG 0.261065 2_3:-55103616 Msa0299870:three_prime_UTR
AGTTCCAATTTCTATCCTTT+GGG 0.317691 2_3:-55105891 Msa0299870:CDS
CATAGAACCATGGGTTCTTC+AGG 0.322897 2_3:-55104697 Msa0299870:CDS
CTCCTGAAGCTTCCTCTTCA+TGG 0.339965 2_3:+55105594 None:intergenic
TCAACCCAAAGGATAGAAAT+TGG 0.341302 2_3:+55105887 None:intergenic
ACCCACATCAAATTTCTTGC+TGG 0.343726 2_3:+55104413 None:intergenic
TCATCTGTATCTTCATCTTC+TGG 0.348247 2_3:+55103844 None:intergenic
AAACCTCTGGTTGCTGATCT+TGG 0.349915 2_3:-55103817 Msa0299870:CDS
ATATCACATATCTTAACCTT+TGG 0.359418 2_3:+55103435 None:intergenic
GCCCTAAAATGACCCACTTC+CGG 0.360298 2_3:+55105628 None:intergenic
CATACTGTCCGGGAACAAAA+TGG 0.364379 2_3:+55105518 None:intergenic
AACCTCTGGTTGCTGATCTT+GGG 0.368580 2_3:-55103816 Msa0299870:CDS
ACACCAGTTCGTTGTGAATT+CGG 0.370596 2_3:+55105965 None:intergenic
GATTGGTTGTGGACAGAAGA+AGG 0.380825 2_3:-55105668 Msa0299870:CDS
CTTCTGTTTACAGGGTGTAA+TGG 0.384171 2_3:-55104770 Msa0299870:intron
CAAATAAATTAGCTTCAAAA+AGG 0.385273 2_3:+55103554 None:intergenic
AAAGAGATAGTTCAGAAAAT+GGG 0.389407 2_3:-55103765 Msa0299870:three_prime_UTR
AGGAATGCTTGGTCCTTGTA+AGG 0.397571 2_3:-55104677 Msa0299870:intron
TCCCATGAAGAGGAAGCTTC+AGG 0.402123 2_3:-55105596 Msa0299870:CDS
ATGTGGAATGACTGCACTTT+GGG 0.405645 2_3:-55105930 Msa0299870:CDS
ATGCAGGTCCCAGGAGCTAC+AGG 0.423543 2_3:-55103943 Msa0299870:intron
GACTGCACTTTGGGATAAAT+GGG 0.426337 2_3:-55105921 Msa0299870:CDS
ACAAAGTTCCCTGTAGCTCC+TGG 0.431609 2_3:+55103934 None:intergenic
AACCGCGGCAGTGGCACCAC+AGG 0.433121 2_3:+55106046 None:intergenic
TCTTCTGGCACAAAGTAAGT+TGG 0.439664 2_3:+55103859 None:intergenic
GTTCGGAGGTGGAGACTATA+CGG 0.442293 2_3:-55106018 Msa0299870:CDS
GGTTGCTGATCTTGGGGATG+TGG 0.454818 2_3:-55103809 Msa0299870:CDS
GTTACTTTGAGATTTGGAAT+TGG 0.459778 2_3:-55103610 Msa0299870:three_prime_UTR
AATGGACCGGTATGATTTCA+AGG 0.462175 2_3:-55104752 Msa0299870:CDS
TGATGACAACATTGTCTCTC+AGG 0.468175 2_3:-55105867 Msa0299870:intron
AGAAATTTGATGTGGGTGAA+AGG 0.489286 2_3:-55104407 Msa0299870:CDS
CTTCTGGCACAAAGTAAGTT+GGG 0.491443 2_3:+55103860 None:intergenic
ACCTCTGGTTGCTGATCTTG+GGG 0.494514 2_3:-55103815 Msa0299870:CDS
ACACCGAATTCACAACGAAC+TGG 0.499424 2_3:-55105968 Msa0299870:CDS
ACAGGAATCACTAAAGGAAA+AGG 0.499985 2_3:-55105487 Msa0299870:CDS
GGACTCCATCCAACCTTACA+AGG 0.504118 2_3:+55104664 None:intergenic
TTCTTAACTTATTATGGACA+TGG 0.506757 2_3:+55103385 None:intergenic
ATGGGTTCTTCAGGAATGCT+TGG 0.507345 2_3:-55104688 Msa0299870:CDS
ACATTAAGCGATGTACCAAC+AGG 0.508189 2_3:+55105544 None:intergenic
GAGGCGTGGTTTCTCGTCTA+CGG 0.509855 2_3:-55106075 Msa0299870:CDS
TGTGATGTCAACATACTGTC+CGG 0.509894 2_3:+55105507 None:intergenic
TATGTGCTTTCGAATTCCCA+TGG 0.513084 2_3:+55104716 None:intergenic
ACACTCGACAAAGCCGGAAG+TGG 0.514154 2_3:-55105641 Msa0299870:CDS
TCCTGAAGCTTCCTCTTCAT+GGG 0.524646 2_3:+55105595 None:intergenic
TGCTTCCCACCCATTCTCCC+CGG 0.526048 2_3:+55104473 None:intergenic
TTTGATGTGGGTGAAAGGCC+AGG 0.528326 2_3:-55104402 Msa0299870:intron
AAAATGCCGGGGAGAATGGG+TGG 0.532086 2_3:-55104479 Msa0299870:CDS
TCTTAACTTATTATGGACAT+GGG 0.538489 2_3:+55103386 None:intergenic
AATGTGGAATGACTGCACTT+TGG 0.543439 2_3:-55105931 Msa0299870:CDS
AAAGGAAGTATAGATGTCTC+AGG 0.543480 2_3:+55103883 None:intergenic
TACAGATGATATGAAACCTC+TGG 0.545460 2_3:-55103830 Msa0299870:CDS
GACATCACAGGAATCACTAA+AGG 0.546953 2_3:-55105493 Msa0299870:CDS
GGAGAAACACTCGACAAAGC+CGG 0.547066 2_3:-55105647 Msa0299870:CDS
GAGGATGCACTTCTTCCTGT+TGG 0.552055 2_3:-55105559 Msa0299870:CDS
CTCAAGGAGTTCCCATGAAG+AGG 0.552464 2_3:-55105606 Msa0299870:CDS
GTTTACAGGGTGTAATGGAC+CGG 0.553779 2_3:-55104765 Msa0299870:intron
CAAAGTTCCCTGTAGCTCCT+GGG 0.553971 2_3:+55103935 None:intergenic
GAATTCGGTGTCATCACACT+AGG 0.557489 2_3:+55105980 None:intergenic
AAGGGAGGTTCAGCATCCCA+TGG 0.557581 2_3:-55104733 Msa0299870:CDS
CACTCGACAAAGCCGGAAGT+GGG 0.558652 2_3:-55105640 Msa0299870:CDS
ATGTGCACTATGCAGGTCCC+AGG 0.560952 2_3:-55103952 Msa0299870:intron
TCCCTGTGGTGCCACTGCCG+CGG 0.562920 2_3:-55106048 Msa0299870:CDS
TGAAGCTAATTTATTTGGCA+CGG 0.569690 2_3:-55103548 Msa0299870:three_prime_UTR
ATGTGCTTTCGAATTCCCAT+GGG 0.571228 2_3:+55104717 None:intergenic
CCTTAGAAGTTAACCAGTGA+AGG 0.578996 2_3:+55103635 None:intergenic
TGAGAGGAATAGATTTCCAA+AGG 0.582356 2_3:-55103451 Msa0299870:three_prime_UTR
AACCTCCCTTGAAATCATAC+CGG 0.585348 2_3:+55104746 None:intergenic
TCAGGAGTTTCGAGTGACAG+AGG 0.587986 2_3:-55105578 Msa0299870:CDS
GTGATGTCAACATACTGTCC+GGG 0.588163 2_3:+55105508 None:intergenic
TGTTAAGATACTACACTGCA+AGG 0.596592 2_3:+55103524 None:intergenic
GATGGGGAAAATGAGTATTG+AGG 0.597201 2_3:-55103692 Msa0299870:intron
GGCACAAAGTAAGTTGGGAA+AGG 0.599353 2_3:+55103865 None:intergenic
GACCGGTATGATTTCAAGGG+AGG 0.601360 2_3:-55104748 Msa0299870:CDS
TCGAAAGCACATAGAACCAT+GGG 0.605881 2_3:-55104706 Msa0299870:CDS
GGACAGTATGTTGACATCAC+AGG 0.614169 2_3:-55105505 Msa0299870:CDS
AAATGCCGGGGAGAATGGGT+GGG 0.614539 2_3:-55104478 Msa0299870:CDS
AGGGAGGTTCAGCATCCCAT+GGG 0.616692 2_3:-55104732 Msa0299870:CDS
ATCCAGCAAGAAATTTGATG+TGG 0.622717 2_3:-55104415 Msa0299870:CDS
TTCGAAAGCACATAGAACCA+TGG 0.623227 2_3:-55104707 Msa0299870:CDS
AAGCATTCCTGAAGAACCCA+TGG 0.626684 2_3:+55104690 None:intergenic
ACCGCGGCAGTGGCACCACA+GGG 0.627605 2_3:+55106047 None:intergenic
TGCAGGTCCCAGGAGCTACA+GGG 0.631734 2_3:-55103942 Msa0299870:intron
ATGGACCGGTATGATTTCAA+GGG 0.635642 2_3:-55104751 Msa0299870:CDS
GGTGTTATAGCTGTAAAATG+TGG 0.647527 2_3:-55105947 Msa0299870:CDS
CAATGTTGTCATCAACCCAA+AGG 0.648583 2_3:+55105876 None:intergenic
TCGTCTACGGCAATTCCCTG+TGG 0.657376 2_3:-55106062 Msa0299870:CDS
TCCAGCAAGAAATTTGATGT+GGG 0.677547 2_3:-55104414 Msa0299870:CDS
TCCCCAAGATCAGCAACCAG+AGG 0.694021 2_3:+55103814 None:intergenic
CGGAGGTGGAGACTATACGG+AGG 0.753244 2_3:-55106015 Msa0299870:CDS
ACTGCACTTTGGGATAAATG+GGG 0.757943 2_3:-55105920 Msa0299870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAATTTATATTTAT+AGG - chr2_3:55104181-55104200 Msa0299870:intron 0.0%
!! GTTTATAATGAATTATTAAG+CGG - chr2_3:55103689-55103708 Msa0299870:intron 15.0%
!! AAGAAAAAATACTAATCTAA+AGG + chr2_3:55104819-55104838 None:intergenic 15.0%
!! AAATATATTATCACAACTAT+AGG + chr2_3:55104930-55104949 None:intergenic 15.0%
!!! TTCTTTTATTTGAATATAGA+TGG - chr2_3:55105749-55105768 Msa0299870:intron 15.0%
!!! TCTTTTATTTGAATATAGAT+GGG - chr2_3:55105750-55105769 Msa0299870:intron 15.0%
!!! ACATGTTTGATATTTTGTTT+TGG - chr2_3:55103765-55103784 Msa0299870:three_prime_UTR 20.0%
!!! ATATTTTGTTTTGGTTAGAT+TGG - chr2_3:55103774-55103793 Msa0299870:exon 20.0%
!! ACAATTGAACAAATAAATAG+TGG + chr2_3:55104338-55104357 None:intergenic 20.0%
!!! TTTCCGATTTATTTACTTTT+GGG - chr2_3:55104362-55104381 Msa0299870:intron 20.0%
!!! TTTTAAAGGTAAAAAAATGC+CGG - chr2_3:55104967-55104986 Msa0299870:intron 20.0%
!! AAAGAACAGTAAAAAATGTA+TGG - chr2_3:55105008-55105027 Msa0299870:intron 20.0%
!! AAGAACAGTAAAAAATGTAT+GGG - chr2_3:55105009-55105028 Msa0299870:intron 20.0%
!! AAATCGTATATAAAATTACC+TGG + chr2_3:55105078-55105097 None:intergenic 20.0%
!! TTTATAAAATTGCAGCTTAT+AGG - chr2_3:55105095-55105114 Msa0299870:intron 20.0%
!! AGGTAAATAAAATTTGAATG+AGG + chr2_3:55105253-55105272 None:intergenic 20.0%
!!! ATTCAAATTTTATTTACCTC+TGG - chr2_3:55105254-55105273 Msa0299870:intron 20.0%
!!! CTATCTTAGTTGATATTTTT+TGG + chr2_3:55105332-55105351 None:intergenic 20.0%
!! AAAATATCAACTAAGATAGT+TGG - chr2_3:55105333-55105352 Msa0299870:intron 20.0%
!! TATATGAGCTAAGAAATATT+TGG - chr2_3:55105438-55105457 Msa0299870:intron 20.0%
!!! CTTTTATTTGAATATAGATG+GGG - chr2_3:55105751-55105770 Msa0299870:intron 20.0%
!!! CAAATAAATTAGCTTCAAAA+AGG + chr2_3:55105908-55105927 None:intergenic 20.0%
!!! CTTTTTGAAGCTAATTTATT+TGG - chr2_3:55105906-55105925 Msa0299870:CDS 20.0%
!!! TGTAGTATCTTAACAAATTT+TGG - chr2_3:55105943-55105962 Msa0299870:CDS 20.0%
!! TTCAACTTCTTAACTTATTA+TGG + chr2_3:55106083-55106102 None:intergenic 20.0%
! GAACTTAAAAATATACACGA+GGG + chr2_3:55103726-55103745 None:intergenic 25.0%
! TGAACTTAAAAATATACACG+AGG + chr2_3:55103727-55103746 None:intergenic 25.0%
!! ATGAGAAGTATATAGTATGA+GGG + chr2_3:55104019-55104038 None:intergenic 25.0%
!! AATGAGAAGTATATAGTATG+AGG + chr2_3:55104020-55104039 None:intergenic 25.0%
!! GTTTCCGATTTATTTACTTT+TGG - chr2_3:55104361-55104380 Msa0299870:intron 25.0%
! TTATAATCCATGTATGACTT+CGG - chr2_3:55104552-55104571 Msa0299870:intron 25.0%
! TCAAATTATCTTCTGTTTAC+AGG - chr2_3:55104680-55104699 Msa0299870:CDS 25.0%
! CAAATTATCTTCTGTTTACA+GGG - chr2_3:55104681-55104700 Msa0299870:CDS 25.0%
! TTTAAAGGTAAAAAAATGCC+GGG - chr2_3:55104968-55104987 Msa0299870:intron 25.0%
!! CTAAGAAATATTTGGAATGT+TGG - chr2_3:55105446-55105465 Msa0299870:intron 25.0%
! CTTTAATCAGTAACCATAAA+TGG + chr2_3:55105678-55105697 None:intergenic 25.0%
! TAAAGAGATAGTTCAGAAAA+TGG - chr2_3:55105693-55105712 Msa0299870:intron 25.0%
! AAAGAGATAGTTCAGAAAAT+GGG - chr2_3:55105694-55105713 Msa0299870:intron 25.0%
!!! TCAGATTGTGATAGTTTTAA+AGG - chr2_3:55105979-55105998 Msa0299870:CDS 25.0%
! ATATCACATATCTTAACCTT+TGG + chr2_3:55106027-55106046 None:intergenic 25.0%
! TCTTAACTTATTATGGACAT+GGG + chr2_3:55106076-55106095 None:intergenic 25.0%
! TTCTTAACTTATTATGGACA+TGG + chr2_3:55106077-55106096 None:intergenic 25.0%
AGTTCCAATTTCTATCCTTT+GGG - chr2_3:55103568-55103587 Msa0299870:three_prime_UTR 30.0%
AGTATTATATAGACACAAGC+AGG + chr2_3:55104121-55104140 None:intergenic 30.0%
ATCCCAATTATGTAATCAAC+TGG + chr2_3:55104250-55104269 None:intergenic 30.0%
TCGCCCAAAAGTAAATAAAT+CGG + chr2_3:55104368-55104387 None:intergenic 30.0%
! CATTTTGTCGTTCAAATTTC+AGG + chr2_3:55104472-55104491 None:intergenic 30.0%
!!! TGTTGATTTTCATGCTTTCT+AGG - chr2_3:55104490-55104509 Msa0299870:CDS 30.0%
!! GTTGATTTTCATGCTTTCTA+GGG - chr2_3:55104491-55104510 Msa0299870:CDS 30.0%
! TTGATTTTCATGCTTTCTAG+GGG - chr2_3:55104492-55104511 Msa0299870:CDS 30.0%
AGGACATAGATCTGTAAAAA+TGG + chr2_3:55104639-55104658 None:intergenic 30.0%
TTAACAGTCATGTAACTGAA+AGG + chr2_3:55104659-55104678 None:intergenic 30.0%
! TATATTTTTCCTCACTGTTC+AGG - chr2_3:55104943-55104962 Msa0299870:intron 30.0%
TTAAAGGTAAAAAAATGCCG+GGG - chr2_3:55104969-55104988 Msa0299870:intron 30.0%
!!! AGTTTTTTTTTTTTCCCCGA+GGG + chr2_3:55105140-55105159 None:intergenic 30.0%
! AAGTATCCGAGTTTAAAACA+TGG - chr2_3:55105209-55105228 Msa0299870:intron 30.0%
!! TTTGAGCCATGTTTTAAACT+CGG + chr2_3:55105218-55105237 None:intergenic 30.0%
ATTTGAATGAGGATTGTTTC+AGG + chr2_3:55105242-55105261 None:intergenic 30.0%
!!! ATTTTTTGGTCTTAAACCTC+CGG + chr2_3:55105318-55105337 None:intergenic 30.0%
TACTGCAATGTGAATTAAGT+GGG + chr2_3:55105393-55105412 None:intergenic 30.0%
!!! AGAAAATGGGTTTTTTCGTT+AGG - chr2_3:55105707-55105726 Msa0299870:intron 30.0%
AAAATATCATCCTTGGATTG+TGG + chr2_3:55105795-55105814 None:intergenic 30.0%
TCAAGTGAAAATATCATCCT+TGG + chr2_3:55105802-55105821 None:intergenic 30.0%
!! AAGGTTGTTACTTTGAGATT+TGG - chr2_3:55105843-55105862 Msa0299870:intron 30.0%
!! GTTACTTTGAGATTTGGAAT+TGG - chr2_3:55105849-55105868 Msa0299870:intron 30.0%
TGAAGCTAATTTATTTGGCA+CGG - chr2_3:55105911-55105930 Msa0299870:CDS 30.0%
! GGTGTTATAGCTGTAAAATG+TGG - chr2_3:55103512-55103531 Msa0299870:intron 35.0%
GAGTTCCAATTTCTATCCTT+TGG - chr2_3:55103567-55103586 Msa0299870:three_prime_UTR 35.0%
TCAACCCAAAGGATAGAAAT+TGG + chr2_3:55103575-55103594 None:intergenic 35.0%
ATTTGATCGAGAGAACGAAA+TGG + chr2_3:55103663-55103682 None:intergenic 35.0%
!!! TGTTTTGGTTAGATTGGTTG+TGG - chr2_3:55103780-55103799 Msa0299870:exon 35.0%
ACAGGAATCACTAAAGGAAA+AGG - chr2_3:55103972-55103991 Msa0299870:intron 35.0%
! CACTAAAGGAAAAGGTTTTC+AGG - chr2_3:55103980-55103999 Msa0299870:intron 35.0%
TTAAAACGAATTACCCCAAG+AGG - chr2_3:55104205-55104224 Msa0299870:intron 35.0%
ACGAAAAAAGCTATCCTCTT+GGG + chr2_3:55104222-55104241 None:intergenic 35.0%
TACGAAAAAAGCTATCCTCT+TGG + chr2_3:55104223-55104242 None:intergenic 35.0%
!!! AGAGGATAGCTTTTTTCGTA+AGG - chr2_3:55104223-55104242 Msa0299870:intron 35.0%
!!! GAGGATAGCTTTTTTCGTAA+GGG - chr2_3:55104224-55104243 Msa0299870:intron 35.0%
GGCCAGTTGATTACATAATT+GGG - chr2_3:55104245-55104264 Msa0299870:intron 35.0%
TTCAGTAGTTTCAACTGATC+AGG - chr2_3:55104397-55104416 Msa0299870:intron 35.0%
GGGAGGAGATAAAAGAATAA+CGG + chr2_3:55104433-55104452 None:intergenic 35.0%
TTGTCGTTCAAATTTCAGGA+GGG + chr2_3:55104468-55104487 None:intergenic 35.0%
TTTGTCGTTCAAATTTCAGG+AGG + chr2_3:55104469-55104488 None:intergenic 35.0%
! TGATTTTCATGCTTTCTAGG+GGG - chr2_3:55104493-55104512 Msa0299870:CDS 35.0%
ATTTACTCGATGGAAGGTTT+CGG + chr2_3:55104596-55104615 None:intergenic 35.0%
AAACCTTCCATCGAGTAAAT+CGG - chr2_3:55104596-55104615 Msa0299870:intron 35.0%
! CTTTAAAAACCTGAACAGTG+AGG + chr2_3:55104955-55104974 None:intergenic 35.0%
!! CTCACTGTTCAGGTTTTTAA+AGG - chr2_3:55104953-55104972 Msa0299870:intron 35.0%
ATCCAGCAAGAAATTTGATG+TGG - chr2_3:55105044-55105063 Msa0299870:intron 35.0%
TCCAGCAAGAAATTTGATGT+GGG - chr2_3:55105045-55105064 Msa0299870:intron 35.0%
AGAAATTTGATGTGGGTGAA+AGG - chr2_3:55105052-55105071 Msa0299870:intron 35.0%
AAAATTGCAGCTTATAGGAC+AGG - chr2_3:55105100-55105119 Msa0299870:intron 35.0%
!!! GTTTTTTTTTTTTCCCCGAG+GGG + chr2_3:55105139-55105158 None:intergenic 35.0%
!!! CAGTTTTTTTTTTTTCCCCG+AGG + chr2_3:55105141-55105160 None:intergenic 35.0%
! AAAAACTGATTCAACTCGAG+TGG - chr2_3:55105153-55105172 Msa0299870:intron 35.0%
GTACTGCAATGTGAATTAAG+TGG + chr2_3:55105394-55105413 None:intergenic 35.0%
!! TTTGGAATGTTGGCTTTATG+CGG - chr2_3:55105456-55105475 Msa0299870:intron 35.0%
! AAAGGAAGTATAGATGTCTC+AGG + chr2_3:55105579-55105598 None:intergenic 35.0%
TCATCTGTATCTTCATCTTC+TGG + chr2_3:55105618-55105637 None:intergenic 35.0%
TACAGATGATATGAAACCTC+TGG - chr2_3:55105629-55105648 Msa0299870:CDS 35.0%
TGTTAAGATACTACACTGCA+AGG + chr2_3:55105938-55105957 None:intergenic 35.0%
!!! GTTTTAAAGGACTACTTGAG+AGG - chr2_3:55105992-55106011 Msa0299870:CDS 35.0%
TGAGAGGAATAGATTTCCAA+AGG - chr2_3:55106008-55106027 Msa0299870:CDS 35.0%
ACACCAGTTCGTTGTGAATT+CGG + chr2_3:55103497-55103516 None:intergenic 40.0%
AATGTGGAATGACTGCACTT+TGG - chr2_3:55103528-55103547 Msa0299870:three_prime_UTR 40.0%
ATGTGGAATGACTGCACTTT+GGG - chr2_3:55103529-55103548 Msa0299870:three_prime_UTR 40.0%
!! TGACTGCACTTTGGGATAAA+TGG - chr2_3:55103537-55103556 Msa0299870:three_prime_UTR 40.0%
!! GACTGCACTTTGGGATAAAT+GGG - chr2_3:55103538-55103557 Msa0299870:three_prime_UTR 40.0%
!! ACTGCACTTTGGGATAAATG+GGG - chr2_3:55103539-55103558 Msa0299870:three_prime_UTR 40.0%
CAATGTTGTCATCAACCCAA+AGG + chr2_3:55103586-55103605 None:intergenic 40.0%
TGATGACAACATTGTCTCTC+AGG - chr2_3:55103592-55103611 Msa0299870:three_prime_UTR 40.0%
ACATTAAGCGATGTACCAAC+AGG + chr2_3:55103918-55103937 None:intergenic 40.0%
!! AATGTTCGCCATTTTGTTCC+CGG - chr2_3:55103933-55103952 Msa0299870:CDS 40.0%
TGTGATGTCAACATACTGTC+CGG + chr2_3:55103955-55103974 None:intergenic 40.0%
GACATCACAGGAATCACTAA+AGG - chr2_3:55103966-55103985 Msa0299870:intron 40.0%
CGAAAAAAGCTATCCTCTTG+GGG + chr2_3:55104221-55104240 None:intergenic 40.0%
GGGCCAGTTGATTACATAAT+TGG - chr2_3:55104244-55104263 Msa0299870:intron 40.0%
TGTTTCGATCCACATCCAAT+TGG - chr2_3:55104276-55104295 Msa0299870:intron 40.0%
TATTACTGTTGCCGACCAAT+TGG + chr2_3:55104294-55104313 None:intergenic 40.0%
AATTGGTCGGCAACAGTAAT+AGG - chr2_3:55104293-55104312 Msa0299870:intron 40.0%
TCAGGAGGGGTCAAATAAAA+CGG + chr2_3:55104454-55104473 None:intergenic 40.0%
TGTCGTTCAAATTTCAGGAG+GGG + chr2_3:55104467-55104486 None:intergenic 40.0%
! GAAGTATCCGAAGTCATACA+TGG + chr2_3:55104562-55104581 None:intergenic 40.0%
AACCTTCCATCGAGTAAATC+GGG - chr2_3:55104597-55104616 Msa0299870:intron 40.0%
TAATTGCCCGATTTACTCGA+TGG + chr2_3:55104606-55104625 None:intergenic 40.0%
CTTCTGTTTACAGGGTGTAA+TGG - chr2_3:55104689-55104708 Msa0299870:CDS 40.0%
AATGGACCGGTATGATTTCA+AGG - chr2_3:55104707-55104726 Msa0299870:CDS 40.0%
ATGGACCGGTATGATTTCAA+GGG - chr2_3:55104708-55104727 Msa0299870:CDS 40.0%
AACCTCCCTTGAAATCATAC+CGG + chr2_3:55104716-55104735 None:intergenic 40.0%
ATGTGCTTTCGAATTCCCAT+GGG + chr2_3:55104745-55104764 None:intergenic 40.0%
TATGTGCTTTCGAATTCCCA+TGG + chr2_3:55104746-55104765 None:intergenic 40.0%
! TTCGAAAGCACATAGAACCA+TGG - chr2_3:55104752-55104771 Msa0299870:CDS 40.0%
! TCGAAAGCACATAGAACCAT+GGG - chr2_3:55104753-55104772 Msa0299870:CDS 40.0%
TAAAAAAATGCCGGGGAGAA+TGG - chr2_3:55104976-55104995 Msa0299870:intron 40.0%
AAAAAAATGCCGGGGAGAAT+GGG - chr2_3:55104977-55104996 Msa0299870:intron 40.0%
ACCCACATCAAATTTCTTGC+TGG + chr2_3:55105049-55105068 None:intergenic 40.0%
! GGAACTATTTTGTATCCCCT+CGG - chr2_3:55105121-55105140 Msa0299870:intron 40.0%
! GAACTATTTTGTATCCCCTC+GGG - chr2_3:55105122-55105141 Msa0299870:intron 40.0%
! AACTATTTTGTATCCCCTCG+GGG - chr2_3:55105123-55105142 Msa0299870:intron 40.0%
TGGCTGAACTGTAGATTACT+AGG - chr2_3:55105274-55105293 Msa0299870:intron 40.0%
GGCTGAACTGTAGATTACTA+GGG - chr2_3:55105275-55105294 Msa0299870:intron 40.0%
!! TTGGAATGTTGGCTTTATGC+GGG - chr2_3:55105457-55105476 Msa0299870:intron 40.0%
TTGTATGATGTGCACTATGC+AGG - chr2_3:55105500-55105519 Msa0299870:CDS 40.0%
CTTCTGGCACAAAGTAAGTT+GGG + chr2_3:55105602-55105621 None:intergenic 40.0%
TCTTCTGGCACAAAGTAAGT+TGG + chr2_3:55105603-55105622 None:intergenic 40.0%
! GATGGGGAAAATGAGTATTG+AGG - chr2_3:55105767-55105786 Msa0299870:intron 40.0%
! TATTGAGGTACCACAATCCA+AGG - chr2_3:55105782-55105801 Msa0299870:intron 40.0%
! TTTTCACTTGAGTCCTTCAC+TGG - chr2_3:55105811-55105830 Msa0299870:intron 40.0%
CCTTAGAAGTTAACCAGTGA+AGG + chr2_3:55105827-55105846 None:intergenic 40.0%
! CCTTCACTGGTTAACTTCTA+AGG - chr2_3:55105824-55105843 Msa0299870:intron 40.0%
!! GAATTCGGTGTCATCACACT+AGG + chr2_3:55103482-55103501 None:intergenic 45.0%
ACACCGAATTCACAACGAAC+TGG - chr2_3:55103491-55103510 Msa0299870:intron 45.0%
TCAGGTCAAAACTCCTGAGA+AGG - chr2_3:55103610-55103629 Msa0299870:three_prime_UTR 45.0%
GTCAAAACTCCTGAGAAGGA+AGG - chr2_3:55103614-55103633 Msa0299870:three_prime_UTR 45.0%
GAACAATAGCCTTCCTTCTC+AGG + chr2_3:55103626-55103645 None:intergenic 45.0%
! GATTGGTTGTGGACAGAAGA+AGG - chr2_3:55103791-55103810 Msa0299870:CDS 45.0%
TCCTGAAGCTTCCTCTTCAT+GGG + chr2_3:55103867-55103886 None:intergenic 45.0%
CATACTGTCCGGGAACAAAA+TGG + chr2_3:55103944-55103963 None:intergenic 45.0%
GTGATGTCAACATACTGTCC+GGG + chr2_3:55103954-55103973 None:intergenic 45.0%
GGACAGTATGTTGACATCAC+AGG - chr2_3:55103954-55103973 Msa0299870:intron 45.0%
TCGATCCACATCCAATTGGT+CGG - chr2_3:55104280-55104299 Msa0299870:intron 45.0%
CAGGAGGGGTCAAATAAAAC+GGG + chr2_3:55104453-55104472 None:intergenic 45.0%
!! GTTTACAGGGTGTAATGGAC+CGG - chr2_3:55104694-55104713 Msa0299870:CDS 45.0%
CATAGAACCATGGGTTCTTC+AGG - chr2_3:55104762-55104781 Msa0299870:intron 45.0%
AAGCATTCCTGAAGAACCCA+TGG + chr2_3:55104772-55104791 None:intergenic 45.0%
ATGGGTTCTTCAGGAATGCT+TGG - chr2_3:55104771-55104790 Msa0299870:intron 45.0%
AGGAATGCTTGGTCCTTGTA+AGG - chr2_3:55104782-55104801 Msa0299870:intron 45.0%
ATGCTTGGTCCTTGTAAGGT+TGG - chr2_3:55104786-55104805 Msa0299870:intron 45.0%
TTGGTCCTTGTAAGGTTGGA+TGG - chr2_3:55104790-55104809 Msa0299870:intron 45.0%
GTAATCTACAGTTCAGCCAG+AGG + chr2_3:55105273-55105292 None:intergenic 45.0%
! GGCACAAAGTAAGTTGGGAA+AGG + chr2_3:55105597-55105616 None:intergenic 45.0%
AAACCTCTGGTTGCTGATCT+TGG - chr2_3:55105642-55105661 Msa0299870:CDS 45.0%
AACCTCTGGTTGCTGATCTT+GGG - chr2_3:55105643-55105662 Msa0299870:CDS 45.0%
TGGGGATGTGGATCCATTTA+TGG - chr2_3:55105662-55105681 Msa0299870:CDS 45.0%
!! TATTATTTATAAAGAAAAAA+AGG + chr2_3:55104043-55104062 None:intergenic 5.0%
!! ATAAAAAATTAAAATCATTA+TGG + chr2_3:55105359-55105378 None:intergenic 5.0%
!!! ACTGCCGCGGTTTTTGAGTT+CGG - chr2_3:55103424-55103443 Msa0299870:three_prime_UTR 50.0%
ACCTCCGAACTCAAAAACCG+CGG + chr2_3:55103431-55103450 None:intergenic 50.0%
GTTCGGAGGTGGAGACTATA+CGG - chr2_3:55103441-55103460 Msa0299870:three_prime_UTR 50.0%
GGAAGGCTATTGTTCTCTCC+AGG - chr2_3:55103631-55103650 Msa0299870:three_prime_UTR 50.0%
AGAACGAAATGGAACGCACC+TGG + chr2_3:55103652-55103671 None:intergenic 50.0%
GGAGAAACACTCGACAAAGC+CGG - chr2_3:55103812-55103831 Msa0299870:CDS 50.0%
!! AGCCGGAAGTGGGTCATTTT+AGG - chr2_3:55103829-55103848 Msa0299870:CDS 50.0%
!! GCCGGAAGTGGGTCATTTTA+GGG - chr2_3:55103830-55103849 Msa0299870:CDS 50.0%
GCCCTAAAATGACCCACTTC+CGG + chr2_3:55103834-55103853 None:intergenic 50.0%
!!! GTGGGTCATTTTAGGGCTCA+AGG - chr2_3:55103837-55103856 Msa0299870:CDS 50.0%
CTCAAGGAGTTCCCATGAAG+AGG - chr2_3:55103853-55103872 Msa0299870:CDS 50.0%
TCCCATGAAGAGGAAGCTTC+AGG - chr2_3:55103863-55103882 Msa0299870:CDS 50.0%
CTCCTGAAGCTTCCTCTTCA+TGG + chr2_3:55103868-55103887 None:intergenic 50.0%
! TCAGGAGTTTCGAGTGACAG+AGG - chr2_3:55103881-55103900 Msa0299870:CDS 50.0%
GAGGATGCACTTCTTCCTGT+TGG - chr2_3:55103900-55103919 Msa0299870:CDS 50.0%
TGTTGCCGACCAATTGGATG+TGG + chr2_3:55104288-55104307 None:intergenic 50.0%
GAGGGGTCAAATAAAACGGG+AGG + chr2_3:55104450-55104469 None:intergenic 50.0%
TGCCCGATTTACTCGATGGA+AGG + chr2_3:55104602-55104621 None:intergenic 50.0%
GACCGGTATGATTTCAAGGG+AGG - chr2_3:55104711-55104730 Msa0299870:CDS 50.0%
GGACTCCATCCAACCTTACA+AGG + chr2_3:55104798-55104817 None:intergenic 50.0%
TTTGATGTGGGTGAAAGGCC+AGG - chr2_3:55105057-55105076 Msa0299870:intron 50.0%
TACTAGGGTTCCTTCCCTCA+CGG - chr2_3:55105290-55105309 Msa0299870:intron 50.0%
TTAAACCTCCGGTTCCGTGA+GGG + chr2_3:55105307-55105326 None:intergenic 50.0%
CAAAGTTCCCTGTAGCTCCT+GGG + chr2_3:55105527-55105546 None:intergenic 50.0%
ACAAAGTTCCCTGTAGCTCC+TGG + chr2_3:55105528-55105547 None:intergenic 50.0%
ACCTCTGGTTGCTGATCTTG+GGG - chr2_3:55105644-55105663 Msa0299870:CDS 50.0%
GAGGCGTGGTTTCTCGTCTA+CGG - chr2_3:55103384-55103403 Msa0299870:three_prime_UTR 55.0%
TCGTCTACGGCAATTCCCTG+TGG - chr2_3:55103397-55103416 Msa0299870:three_prime_UTR 55.0%
GAACTCAAAAACCGCGGCAG+TGG + chr2_3:55103425-55103444 None:intergenic 55.0%
!!! GCGGTTTTTGAGTTCGGAGG+TGG - chr2_3:55103430-55103449 Msa0299870:three_prime_UTR 55.0%
ACACTCGACAAAGCCGGAAG+TGG - chr2_3:55103818-55103837 Msa0299870:CDS 55.0%
CACTCGACAAAGCCGGAAGT+GGG - chr2_3:55103819-55103838 Msa0299870:CDS 55.0%
AAGGGAGGTTCAGCATCCCA+TGG - chr2_3:55104726-55104745 Msa0299870:CDS 55.0%
AGGGAGGTTCAGCATCCCAT+GGG - chr2_3:55104727-55104746 Msa0299870:CDS 55.0%
AAAATGCCGGGGAGAATGGG+TGG - chr2_3:55104980-55104999 Msa0299870:intron 55.0%
AAATGCCGGGGAGAATGGGT+GGG - chr2_3:55104981-55105000 Msa0299870:intron 55.0%
CTTAAACCTCCGGTTCCGTG+AGG + chr2_3:55105308-55105327 None:intergenic 55.0%
ATGTGCACTATGCAGGTCCC+AGG - chr2_3:55105507-55105526 Msa0299870:CDS 55.0%
TCCCCAAGATCAGCAACCAG+AGG + chr2_3:55105648-55105667 None:intergenic 55.0%
GGTTGCTGATCTTGGGGATG+TGG - chr2_3:55105650-55105669 Msa0299870:CDS 55.0%
!! GCTAGCGTTTTCGAGAGGCG+TGG - chr2_3:55103370-55103389 Msa0299870:three_prime_UTR 60.0%
!!! GCCGCGGTTTTTGAGTTCGG+AGG - chr2_3:55103427-55103446 Msa0299870:three_prime_UTR 60.0%
CGGAGGTGGAGACTATACGG+AGG - chr2_3:55103444-55103463 Msa0299870:three_prime_UTR 60.0%
TGCTTCCCACCCATTCTCCC+CGG + chr2_3:55104989-55105008 None:intergenic 60.0%
GGTTCCTTCCCTCACGGAAC+CGG - chr2_3:55105296-55105315 Msa0299870:intron 60.0%
ATGCAGGTCCCAGGAGCTAC+AGG - chr2_3:55105516-55105535 Msa0299870:CDS 60.0%
TGCAGGTCCCAGGAGCTACA+GGG - chr2_3:55105517-55105536 Msa0299870:CDS 60.0%
TCCTTCCCTCACGGAACCGG+AGG - chr2_3:55105299-55105318 Msa0299870:intron 65.0%
ACCTCCGGTTCCGTGAGGGA+AGG + chr2_3:55105303-55105322 None:intergenic 65.0%
!! TCCCTGTGGTGCCACTGCCG+CGG - chr2_3:55103411-55103430 Msa0299870:three_prime_UTR 70.0%
ACCGCGGCAGTGGCACCACA+GGG + chr2_3:55103415-55103434 None:intergenic 70.0%
AACCGCGGCAGTGGCACCAC+AGG + chr2_3:55103416-55103435 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55103368 55106113 55103368 ID=Msa0299870;Name=Msa0299870
chr2_3 mRNA 55103368 55106113 55103368 ID=Msa0299870-mRNA-1;Parent=Msa0299870;Name=Msa0299870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.83|0.85|1|0.66|0.57|7|361|281
chr2_3 exon 55103368 55103480 55103368 ID=Msa0299870-mRNA-1:exon:17622;Parent=Msa0299870-mRNA-1
chr2_3 exon 55103517 55103671 55103517 ID=Msa0299870-mRNA-1:exon:17621;Parent=Msa0299870-mRNA-1
chr2_3 exon 55103693 55103959 55103693 ID=Msa0299870-mRNA-1:exon:17620;Parent=Msa0299870-mRNA-1
chr2_3 exon 55104403 55104516 55104403 ID=Msa0299870-mRNA-1:exon:17619;Parent=Msa0299870-mRNA-1
chr2_3 exon 55104678 55104779 55104678 ID=Msa0299870-mRNA-1:exon:17618;Parent=Msa0299870-mRNA-1
chr2_3 exon 55105480 55105689 55105480 ID=Msa0299870-mRNA-1:exon:17617;Parent=Msa0299870-mRNA-1
chr2_3 exon 55105868 55106113 55105868 ID=Msa0299870-mRNA-1:exon:17616;Parent=Msa0299870-mRNA-1
chr2_3 CDS 55105868 55106113 55105868 ID=Msa0299870-mRNA-1:cds;Parent=Msa0299870-mRNA-1
chr2_3 CDS 55105480 55105689 55105480 ID=Msa0299870-mRNA-1:cds;Parent=Msa0299870-mRNA-1
chr2_3 CDS 55104678 55104779 55104678 ID=Msa0299870-mRNA-1:cds;Parent=Msa0299870-mRNA-1
chr2_3 CDS 55104403 55104516 55104403 ID=Msa0299870-mRNA-1:cds;Parent=Msa0299870-mRNA-1
chr2_3 CDS 55103786 55103959 55103786 ID=Msa0299870-mRNA-1:cds;Parent=Msa0299870-mRNA-1
chr2_3 three_prime_UTR 55103693 55103785 55103693 ID=Msa0299870-mRNA-1:three_prime_utr;Parent=Msa0299870-mRNA-1
chr2_3 three_prime_UTR 55103517 55103671 55103517 ID=Msa0299870-mRNA-1:three_prime_utr;Parent=Msa0299870-mRNA-1
chr2_3 three_prime_UTR 55103368 55103480 55103368 ID=Msa0299870-mRNA-1:three_prime_utr;Parent=Msa0299870-mRNA-1
Gene Sequence

>Msa0299870

ATGCTAGCGTTTTCGAGAGGCGTGGTTTCTCGTCTACGGCAATTCCCTGTGGTGCCACTGCCGCGGTTTTTGAGTTCGGAGGTGGAGACTATACGGAGGATTGAAGCAAAACCTAGTGTGATGACACCGAATTCACAACGAACTGGTGTTATAGCTGTAAAATGTGGAATGACTGCACTTTGGGATAAATGGGGTGCTAGAGTTCCAATTTCTATCCTTTGGGTTGATGACAACATTGTCTCTCAGATTGGTTGTGGACAGAAGAAGGAGAAACACTCGACAAAGCCGGAAGTGGGTCATTTTAGGGCTCAAGGAGTTCCCATGAAGAGGAAGCTTCAGGAGTTTCGAGTGACAGAGGATGCACTTCTTCCTGTTGGTACATCGCTTAATGTTCGCCATTTTGTTCCCGGACAGTATGTTGACATCACAGGAATCACTAAAGGAAAAGGTTTTCAGGGTGTAATGGACCGGTATGATTTCAAGGGAGGTTCAGCATCCCATGGGAATTCGAAAGCACATAGAACCATGGGTTCTTCAGGAATGCTTGGTCCTTGTAAGGTTTTTAAAGGTAAAAAAATGCCGGGGAGAATGGGTGGGAAGCAAAGAACAGTAAAAAATGTATGGGTCTACAAAATTGATCCAGCAAGAAATTTGATGTGGGTGAAAGGCCAGGTCCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCAGTTTATGAAAAACCTGAGACATCTATACTTCCTTTCCCAACTTACTTTGTGCCAGAAGATGAAGATACAGATGATATGAAACCTCTGGTTGCTGATCTTGGGGATGTGGATCCATTTATGGTTACTGATTAA

Protein sequence

>Msa0299870

MLAFSRGVVSRLRQFPVVPLPRFLSSEVETIRRIEAKPSVMTPNSQRTGVIAVKCGMTALWDKWGARVPISILWVDDNIVSQIGCGQKKEKHSTKPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVMDRYDFKGGSASHGNSKAHRTMGSSGMLGPCKVFKGKKMPGRMGGKQRTVKNVWVYKIDPARNLMWVKGQVPGATGNFVFIKDAVYEKPETSILPFPTYFVPEDEDTDDMKPLVADLGDVDPFMVTD*