AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024390 MtrunA17_Chr1g0178481 92.758 649 16 4 1 649 1 618 0.0 1211
Msa0024390 MtrunA17_Chr4g0061601 30.769 520 326 7 111 628 117 604 2.59e-63 221
Msa0024390 MtrunA17_Chr6g0452061 30.165 547 322 14 110 646 262 758 1.03e-61 219
Msa0024390 MtrunA17_Chr6g0452061 51.807 83 40 0 547 629 17 99 3.77e-18 89.0
Msa0024390 MtrunA17_Chr6g0452111 29.476 553 325 14 110 646 744 1247 4.66e-58 212
Msa0024390 MtrunA17_Chr6g0452111 38.542 288 153 6 363 645 333 601 2.04e-44 171
Msa0024390 MtrunA17_Chr6g0452141 29.189 555 332 12 106 646 739 1246 5.69e-57 209
Msa0024390 MtrunA17_Chr6g0452141 41.923 260 128 5 390 645 355 595 7.83e-46 175
Msa0024390 MtrunA17_Chr6g0452171 29.084 557 330 13 106 646 742 1249 3.39e-55 203
Msa0024390 MtrunA17_Chr6g0452171 39.236 288 151 6 363 645 326 594 3.91e-46 176
Msa0024390 MtrunA17_Chr3g0123411 31.081 518 295 16 137 636 657 1130 1.14e-54 202
Msa0024390 MtrunA17_Chr3g0123411 28.400 500 315 10 137 628 1 465 1.63e-40 159
Msa0024390 MtrunA17_Chr6g0451911 29.325 607 354 17 57 646 695 1243 2.28e-54 201
Msa0024390 MtrunA17_Chr6g0451911 39.931 288 149 6 363 645 326 594 3.66e-46 176
Msa0024390 MtrunA17_Chr6g0452041 29.211 558 330 14 105 646 740 1248 2.37e-54 201
Msa0024390 MtrunA17_Chr6g0452041 38.542 288 153 6 363 645 326 594 1.54e-44 171
Msa0024390 MtrunA17_Chr1g0156821 31.740 523 281 15 137 635 747 1217 4.27e-54 200
Msa0024390 MtrunA17_Chr1g0156821 39.184 245 129 3 386 628 362 588 1.44e-40 159
Msa0024390 MtrunA17_Chr6g0452071 36.778 329 179 6 323 646 138 442 5.14e-54 191
Msa0024390 MtrunA17_Chr6g0474071 31.323 431 228 8 249 629 20 432 1.14e-53 190
Msa0024390 MtrunA17_Chr5g0433051 32.716 486 284 16 163 635 233 688 5.77e-53 194
Msa0024390 MtrunA17_Chr4g0041871 37.658 316 175 6 317 628 925 1222 1.02e-51 193
Msa0024390 MtrunA17_Chr4g0041871 39.033 269 144 5 363 628 308 559 1.15e-45 175
Msa0024390 MtrunA17_Chr6g0451881 29.050 537 295 16 137 646 759 1236 3.10e-51 191
Msa0024390 MtrunA17_Chr6g0451881 41.975 243 118 5 390 628 354 577 2.82e-45 174
Msa0024390 MtrunA17_Chr4g0069351 30.402 523 310 14 134 646 786 1264 3.83e-51 191
Msa0024390 MtrunA17_Chr4g0069351 41.797 256 119 7 384 628 358 594 5.49e-48 182
Msa0024390 MtrunA17_Chr5g0433071 32.819 454 255 11 207 635 262 690 7.60e-51 187
Msa0024390 MtrunA17_Chr7g0227391 29.865 519 287 16 134 628 178 643 2.58e-50 186
Msa0024390 MtrunA17_Chr2g0285191 29.348 552 331 15 110 645 779 1287 3.76e-50 188
Msa0024390 MtrunA17_Chr2g0285191 28.070 513 298 13 137 628 152 614 1.19e-48 184
Msa0024390 MtrunA17_Chr1g0180601 39.298 285 144 6 367 647 368 627 5.27e-50 188
Msa0024390 MtrunA17_Chr1g0180601 37.544 285 156 7 363 642 1019 1286 1.80e-48 183
Msa0024390 MtrunA17_Chr2g0285301 26.705 528 331 12 117 628 93 580 7.23e-50 187
Msa0024390 MtrunA17_Chr2g0285301 29.015 548 318 17 110 635 747 1245 1.00e-46 178
Msa0024390 MtrunA17_Chr7g0264631 40.161 249 129 5 396 642 1082 1312 1.27e-49 187
Msa0024390 MtrunA17_Chr7g0264631 41.509 265 125 6 387 647 416 654 2.51e-49 186
Msa0024390 MtrunA17_Chr5g0412741 29.545 528 318 14 129 646 204 687 2.00e-49 183
Msa0024390 MtrunA17_Chr7g0233901 35.048 311 183 5 323 629 920 1215 2.11e-49 186
Msa0024390 MtrunA17_Chr7g0233901 37.716 289 141 8 369 645 322 583 4.94e-44 170
Msa0024390 MtrunA17_Chr6g0481921 27.866 506 308 13 137 628 25 487 2.34e-49 186
Msa0024390 MtrunA17_Chr6g0481921 29.055 561 322 18 110 649 653 1158 1.47e-45 174
Msa0024390 MtrunA17_Chr5g0410921 38.730 315 165 9 320 628 913 1205 5.78e-49 185
Msa0024390 MtrunA17_Chr5g0410921 41.736 242 120 5 390 628 349 572 8.70e-46 175
Msa0024390 MtrunA17_Chr1g0193991 40.891 247 125 5 385 628 377 605 8.09e-49 184
Msa0024390 MtrunA17_Chr1g0193991 38.112 286 158 5 363 645 1009 1278 4.35e-44 170
Msa0024390 MtrunA17_Chr3g0119381 35.030 334 179 8 309 628 306 615 1.59e-48 183
Msa0024390 MtrunA17_Chr3g0119381 35.092 379 206 12 289 647 938 1296 1.26e-44 172
Msa0024390 MtrunA17_Chr1g0194031 40.816 245 124 5 385 626 372 598 2.08e-48 182
Msa0024390 MtrunA17_Chr2g0285311 26.679 521 335 12 117 628 103 585 3.20e-48 182
Msa0024390 MtrunA17_Chr2g0285311 28.649 555 331 17 110 645 751 1259 1.56e-45 174
Msa0024390 MtrunA17_Chr4g0069361 30.077 522 313 14 134 646 786 1264 3.91e-48 182
Msa0024390 MtrunA17_Chr4g0069361 41.564 243 119 5 390 628 371 594 5.90e-48 182
Msa0024390 MtrunA17_Chr1g0194001 39.928 278 147 6 363 636 112 373 8.75e-48 172
Msa0024390 MtrunA17_Chr6g0453051 29.779 544 309 19 111 629 91 586 2.00e-47 180
Msa0024390 MtrunA17_Chr6g0453051 28.655 513 326 14 122 628 746 1224 2.27e-44 171
Msa0024390 MtrunA17_Chr4g0069401 31.043 422 250 11 221 628 195 589 5.37e-47 179
Msa0024390 MtrunA17_Chr4g0069401 29.268 533 303 18 134 646 784 1262 1.55e-43 168
Msa0024390 MtrunA17_Chr4g0069411 39.852 271 138 5 371 635 1023 1274 8.98e-47 178
Msa0024390 MtrunA17_Chr4g0069411 34.062 320 180 8 317 628 316 612 2.90e-43 167
Msa0024390 MtrunA17_Chr6g0486841 30.364 550 323 19 111 642 86 593 3.11e-46 176
Msa0024390 MtrunA17_Chr6g0486841 38.095 252 135 4 380 628 985 1218 9.80e-43 166
Msa0024390 MtrunA17_Chr3g0138211 40.496 242 123 5 390 628 389 612 7.41e-46 175
Msa0024390 MtrunA17_Chr3g0138211 37.201 293 146 7 363 636 991 1264 3.23e-43 167
Msa0024390 MtrunA17_Chr4g0039821 38.542 288 145 6 365 646 1001 1262 1.26e-45 175
Msa0024390 MtrunA17_Chr4g0039821 40.741 243 121 5 390 628 369 592 3.00e-44 171
Msa0024390 MtrunA17_Chr6g0452081 41.202 233 112 5 390 619 20 230 3.43e-45 160
Msa0024390 MtrunA17_Chr8g0366481 36.306 314 174 7 320 628 310 602 4.62e-43 164
Msa0024390 MtrunA17_Chr8g0344651 35.016 317 172 8 323 629 523 815 1.13e-42 166
Msa0024390 MtrunA17_Chr8g0344651 31.117 376 204 11 292 645 1126 1468 1.78e-38 153
Msa0024390 MtrunA17_Chr3g0128381 36.397 272 145 7 366 628 362 614 6.14e-42 161
Msa0024390 MtrunA17_Chr7g0222781 32.588 313 188 6 320 629 330 622 9.89e-39 154
Msa0024390 MtrunA17_Chr7g0222781 35.156 256 137 7 393 644 1151 1381 4.21e-33 136
Msa0024390 MtrunA17_Chr3g0128391 26.804 485 273 9 207 628 66 531 2.09e-38 150
Msa0024390 MtrunA17_Chr1g0212701 29.540 413 238 10 242 646 259 626 3.91e-38 152
Msa0024390 MtrunA17_Chr1g0212701 35.938 256 135 7 393 644 1143 1373 3.84e-33 136
Msa0024390 MtrunA17_Chr6g0463181 30.279 251 158 2 393 643 1208 1441 1.04e-32 135
Msa0024390 MtrunA17_Chr6g0463181 29.339 242 136 7 397 635 609 818 6.14e-18 88.6
Msa0024390 MtrunA17_Chr1g0183191 30.370 270 160 5 367 629 1251 1499 3.08e-32 134
Msa0024390 MtrunA17_Chr1g0183191 30.213 235 124 7 414 646 661 857 1.82e-16 84.0
Msa0024390 MtrunA17_Chr6g0463141 31.780 236 144 3 393 628 1249 1467 4.71e-32 133
Msa0024390 MtrunA17_Chr6g0463121 30.677 251 157 3 393 643 1224 1457 5.11e-32 133
Msa0024390 MtrunA17_Chr6g0463121 29.084 251 141 7 377 626 607 821 9.20e-21 97.8
Msa0024390 MtrunA17_Chr6g0472531 31.873 251 154 3 393 643 1175 1408 7.90e-32 132
Msa0024390 MtrunA17_Chr6g0472531 28.879 232 131 5 397 626 573 772 6.26e-19 91.7
Msa0024390 MtrunA17_Chr8g0363771 29.876 241 152 2 395 635 1256 1479 2.26e-31 131
Msa0024390 MtrunA17_Chr8g0363771 23.647 351 210 13 311 646 543 850 5.24e-16 82.4
Msa0024390 MtrunA17_Chr2g0295921 30.290 241 151 2 395 635 1271 1494 3.30e-31 130
Msa0024390 MtrunA17_Chr2g0295921 24.719 267 159 8 382 646 641 867 3.13e-15 80.1
Msa0024390 MtrunA17_Chr7g0262191 31.489 235 144 2 395 629 1282 1499 3.59e-31 130
Msa0024390 MtrunA17_Chr7g0262191 29.787 235 125 6 414 646 657 853 1.43e-16 84.3
Msa0024390 MtrunA17_Chr2g0295901 30.612 245 152 3 395 638 1256 1483 9.10e-31 129
Msa0024390 MtrunA17_Chr2g0295901 24.571 350 208 13 313 646 546 855 6.44e-17 85.5
Msa0024390 MtrunA17_Chr8g0359291 29.880 251 159 2 393 643 406 639 1.32e-30 127
Msa0024390 MtrunA17_Chr2g0295911 30.290 241 151 2 395 635 1259 1482 1.38e-30 129
Msa0024390 MtrunA17_Chr2g0295911 25.652 230 133 5 418 646 663 855 6.72e-16 82.0
Msa0024390 MtrunA17_Chr5g0412941 30.705 241 150 3 395 635 83 306 1.78e-30 122
Msa0024390 MtrunA17_Chr6g0463201 31.197 234 143 3 395 628 1232 1447 2.04e-30 128
Msa0024390 MtrunA17_Chr6g0463201 28.216 241 140 6 397 635 627 836 2.32e-17 86.7
Msa0024390 MtrunA17_Chr6g0463151 30.279 251 158 3 393 643 1042 1275 2.33e-30 128
Msa0024390 MtrunA17_Chr6g0463151 26.991 226 131 5 401 624 444 637 1.21e-15 81.3
Msa0024390 MtrunA17_Chr6g0463131 30.738 244 150 4 393 634 1225 1451 2.96e-30 127
Msa0024390 MtrunA17_Chr6g0463131 27.778 234 135 5 397 628 623 824 1.30e-17 87.4
Msa0024390 MtrunA17_Chr8g0341851 30.769 234 145 2 395 628 1218 1434 8.89e-30 126
Msa0024390 MtrunA17_Chr8g0341851 22.623 610 358 21 74 642 298 834 9.50e-22 100
Msa0024390 MtrunA17_Chr5g0445741 28.938 273 173 5 367 635 1217 1472 2.80e-29 124
Msa0024390 MtrunA17_Chr5g0445741 24.159 327 203 8 312 628 542 833 5.61e-17 85.5
Msa0024390 MtrunA17_Chr3g0085281 22.610 544 350 16 106 628 942 1435 2.82e-29 124
Msa0024390 MtrunA17_Chr3g0085281 24.062 320 207 7 316 628 507 797 2.48e-15 80.1
Msa0024390 MtrunA17_Chr5g0445671 28.938 273 173 5 367 635 826 1081 4.37e-29 124
Msa0024390 MtrunA17_Chr5g0445671 23.853 327 204 8 312 628 151 442 6.84e-17 85.1
Msa0024390 MtrunA17_Chr2g0285731 33.191 235 140 2 394 628 1234 1451 5.61e-29 124
Msa0024390 MtrunA17_Chr2g0285731 30.594 219 116 6 414 628 633 819 2.70e-18 89.7
Msa0024390 MtrunA17_Chr5g0412721 30.769 234 145 3 395 628 1244 1460 7.70e-29 123
Msa0024390 MtrunA17_Chr5g0412721 24.688 320 197 8 317 628 539 822 6.86e-18 88.6
Msa0024390 MtrunA17_Chr8g0376961 30.165 242 150 4 395 635 1196 1419 8.01e-29 123
Msa0024390 MtrunA17_Chr8g0376961 23.926 326 204 8 316 631 503 794 7.57e-16 82.0
Msa0024390 MtrunA17_Chr3g0101471 28.679 265 169 5 367 628 1027 1274 1.19e-28 122
Msa0024390 MtrunA17_Chr3g0101471 25.072 347 212 8 308 646 338 644 3.01e-19 92.8
Msa0024390 MtrunA17_Chr1g0202221 28.814 236 151 2 393 628 1131 1349 2.76e-28 121
Msa0024390 MtrunA17_Chr1g0202221 24.179 335 210 6 319 640 532 835 1.07e-17 87.8
Msa0024390 MtrunA17_Chr6g0463391 29.915 234 146 3 395 628 412 627 3.69e-28 120
Msa0024390 MtrunA17_Chr3g0101441 28.632 234 150 2 395 628 1060 1276 5.92e-28 120
Msa0024390 MtrunA17_Chr3g0101441 24.496 347 214 9 308 646 340 646 5.92e-18 88.6
Msa0024390 MtrunA17_Chr8g0337121 28.400 250 162 2 394 643 1256 1488 6.88e-28 120
Msa0024390 MtrunA17_Chr8g0337121 23.757 362 219 12 277 628 516 830 3.06e-16 83.2
Msa0024390 MtrunA17_Chr6g0463211 29.487 234 147 3 395 628 1298 1513 6.93e-28 120
Msa0024390 MtrunA17_Chr6g0463211 24.383 324 186 9 326 628 576 861 9.21e-18 88.2
Msa0024390 MtrunA17_Chr3g0101461 30.342 234 146 3 395 628 1060 1276 7.64e-28 120
Msa0024390 MtrunA17_Chr3g0101461 24.286 350 211 10 308 646 340 646 5.07e-18 89.0
Msa0024390 MtrunA17_Chr8g0337191 28.400 250 162 2 394 643 1236 1468 9.80e-28 119
Msa0024390 MtrunA17_Chr8g0337191 24.590 244 149 6 386 628 601 810 3.63e-14 76.6
Msa0024390 MtrunA17_Chr5g0445701 30.698 215 132 2 405 619 4 201 2.18e-27 111
Msa0024390 MtrunA17_Chr8g0353541 27.636 275 173 4 367 635 795 1049 2.79e-27 118
Msa0024390 MtrunA17_Chr8g0353541 27.350 234 132 6 414 646 226 422 2.71e-16 83.2
Msa0024390 MtrunA17_Chr6g0471281 30.000 280 176 5 367 643 1196 1458 5.26e-27 117
Msa0024390 MtrunA17_Chr6g0471281 28.745 247 141 6 397 640 623 837 1.68e-16 84.0
Msa0024390 MtrunA17_Chr8g0341751 29.046 241 154 2 395 635 1042 1265 9.21e-27 116
Msa0024390 MtrunA17_Chr8g0341751 28.511 235 128 7 414 646 442 638 5.80e-18 88.6
Msa0024390 MtrunA17_Chr8g0353781 29.060 234 149 2 395 628 1209 1425 2.45e-26 115
Msa0024390 MtrunA17_Chr8g0353781 23.404 376 232 13 279 646 486 813 1.40e-18 90.9
Msa0024390 MtrunA17_Chr2g0333911 30.556 252 150 5 395 646 772 998 4.50e-26 114
Msa0024390 MtrunA17_Chr2g0333911 25.197 254 156 8 383 633 147 369 3.61e-11 66.6
Msa0024390 MtrunA17_Chr3g0101481 30.081 246 145 5 395 635 1253 1476 4.82e-26 114
Msa0024390 MtrunA17_Chr3g0101481 24.340 341 201 8 317 646 544 838 2.82e-17 86.7
Msa0024390 MtrunA17_Chr8g0341761 29.060 234 149 2 395 628 1203 1419 8.69e-26 113
Msa0024390 MtrunA17_Chr8g0341761 26.210 248 144 7 401 646 600 810 1.60e-17 87.4
Msa0024390 MtrunA17_Chr3g0080981 32.051 234 142 2 395 628 1232 1448 1.56e-25 112
Msa0024390 MtrunA17_Chr3g0080981 21.839 435 284 13 222 646 443 831 7.84e-16 82.0
Msa0024390 MtrunA17_Chr3g0080941 32.051 234 142 2 395 628 1233 1449 3.02e-25 112
Msa0024390 MtrunA17_Chr3g0080941 22.651 415 276 9 222 628 443 820 1.87e-16 84.0
Msa0024390 MtrunA17_Chr1g0195691 30.579 242 149 4 395 635 1271 1494 9.02e-25 110
Msa0024390 MtrunA17_Chr1g0195691 23.409 487 295 17 186 646 430 864 2.49e-20 96.3
Msa0024390 MtrunA17_Chr8g0341811 28.571 231 148 2 405 635 1040 1253 2.42e-24 108
Msa0024390 MtrunA17_Chr8g0341811 28.216 241 135 6 407 646 448 651 1.03e-19 94.4
Msa0024390 MtrunA17_Chr8g0393151 31.224 237 135 5 405 636 27 240 2.75e-23 99.8
Msa0024390 MtrunA17_Chr8g0366471 43.860 114 64 0 532 645 7 120 4.06e-22 93.2
Msa0024390 MtrunA17_Chr8g0341801 27.778 234 152 2 395 628 185 401 2.38e-21 97.4
Msa0024390 MtrunA17_Chr6g0484351 28.632 234 150 2 395 628 410 626 3.25e-21 98.2
Msa0024390 MtrunA17_Chr1g0176451 31.020 245 131 10 397 624 1 224 2.28e-18 89.0
Msa0024390 MtrunA17_Chr6g0452051 34.225 187 99 6 363 544 247 414 3.20e-18 87.8
Msa0024390 MtrunA17_Chr5g0408061 34.043 235 131 9 397 624 47 264 1.60e-17 86.7
Msa0024390 MtrunA17_Chr3g0130331 30.736 231 132 8 405 626 50 261 2.78e-17 85.9
Msa0024390 MtrunA17_Chr8g0384391 28.571 224 131 6 409 624 52 254 3.96e-17 85.5
Msa0024390 MtrunA17_Chr1g0198931 32.735 223 118 9 413 624 107 308 6.36e-17 84.7
Msa0024390 MtrunA17_Chr7g0267971 30.364 247 133 10 397 626 138 362 1.33e-16 84.0
Msa0024390 MtrunA17_Chr5g0412921 28.364 275 147 9 378 646 594 824 3.16e-16 82.8
Msa0024390 MtrunA17_Chr1g0176441 28.897 263 148 10 397 642 149 389 3.36e-16 82.4
Msa0024390 MtrunA17_Chr6g0484361 29.293 198 109 5 414 610 622 789 3.86e-16 82.4
Msa0024390 MtrunA17_Chr8g0366451 33.333 159 83 5 390 544 308 447 4.68e-16 81.3
Msa0024390 MtrunA17_Chr2g0316301 29.555 247 135 10 409 638 69 293 1.52e-15 80.5
Msa0024390 MtrunA17_Chr7g0249091 27.572 243 128 6 409 626 96 315 2.00e-15 78.2
Msa0024390 MtrunA17_Chr1g0202431 30.000 230 128 9 404 624 39 244 2.17e-15 79.7
Msa0024390 MtrunA17_Chr1g0199471 30.417 240 139 9 396 626 500 720 4.77e-15 79.3
Msa0024390 MtrunA17_Chr8g0359931 31.933 238 109 9 397 608 37 247 9.59e-15 77.8
Msa0024390 MtrunA17_Chr4g0039261 31.222 221 125 8 413 625 51 252 6.03e-14 75.5
Msa0024390 MtrunA17_Chr8g0341791 28.205 156 101 3 492 646 20 165 1.01e-13 73.2
Msa0024390 MtrunA17_Chr2g0285231 45.333 75 41 0 561 635 25 99 1.03e-13 67.8
Msa0024390 MtrunA17_Chr4g0065231 29.286 280 134 12 389 642 48 289 1.53e-13 73.9
Msa0024390 MtrunA17_Chr4g0050261 27.668 253 155 8 383 625 43 277 5.39e-13 72.4
Msa0024390 MtrunA17_Chr7g0257341 29.204 226 138 6 414 638 573 777 6.38e-13 72.4
Msa0024390 MtrunA17_Chr2g0318061 29.333 225 125 9 413 626 31 232 1.30e-12 70.1
Msa0024390 MtrunA17_Chr3g0102731 27.826 230 130 9 407 624 92 297 1.68e-12 70.5
Msa0024390 MtrunA17_Chr4g0050251 27.165 254 155 8 383 625 43 277 3.27e-12 69.7
Msa0024390 MtrunA17_Chr7g0262321 30.000 200 121 6 412 608 567 750 6.68e-12 68.9
Msa0024390 MtrunA17_Chr3g0132711 25.551 227 145 6 412 635 208 413 7.07e-12 68.6
Msa0024390 MtrunA17_Chr4g0039251 28.571 224 127 7 413 625 93 294 1.06e-11 68.2
Msa0024390 MtrunA17_Chr3g0093041 24.771 218 140 6 412 626 194 390 1.10e-11 67.8
Msa0024390 MtrunA17_Chr5g0446901 28.261 230 133 8 407 624 103 312 1.25e-11 67.8
Msa0024390 MtrunA17_Chr3g0093091 21.678 286 193 8 365 638 578 844 2.34e-11 67.4
Msa0024390 MtrunA17_Chr7g0263351 26.180 233 132 10 408 625 122 329 3.96e-11 66.2
Msa0024390 MtrunA17_Chr1g0213091 25.980 204 118 6 413 606 122 302 5.65e-11 65.9
Msa0024390 MtrunA17_Chr4g0050291 31.858 226 120 12 413 625 50 254 6.25e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024390 AT5G03910.1 54.839 651 245 6 8 649 24 634 0.0 701
Msa0024390 AT3G28345.1 30.119 674 375 21 15 646 605 1224 4.12e-60 218
Msa0024390 AT3G28345.1 39.474 266 140 4 383 645 345 592 5.96e-46 176
Msa0024390 AT3G28415.2 31.034 551 322 13 108 646 709 1213 3.75e-57 209
Msa0024390 AT3G28415.2 36.364 286 156 6 364 645 316 579 3.21e-42 165
Msa0024390 AT3G28415.1 31.034 551 322 13 108 646 701 1205 3.86e-57 209
Msa0024390 AT3G28415.1 36.364 286 156 6 364 645 308 571 3.35e-42 164
Msa0024390 AT5G39040.1 30.483 538 317 10 117 644 132 622 9.30e-57 203
Msa0024390 AT3G28390.1 40.333 300 152 6 351 646 933 1209 6.69e-55 203
Msa0024390 AT3G28390.1 39.847 261 126 6 380 628 322 563 1.74e-42 166
Msa0024390 AT3G28380.1 29.421 673 381 21 15 646 605 1224 3.88e-54 201
Msa0024390 AT3G28380.1 38.519 270 137 6 384 644 346 595 8.19e-43 166
Msa0024390 AT3G28360.1 39.032 310 159 6 345 646 923 1210 9.52e-54 199
Msa0024390 AT3G28360.1 38.148 270 139 6 369 628 311 562 3.50e-41 161
Msa0024390 AT1G28010.1 41.975 243 125 2 386 628 362 588 5.02e-53 197
Msa0024390 AT1G28010.1 39.113 248 132 4 383 628 992 1222 1.82e-46 177
Msa0024390 AT5G58270.1 30.808 594 336 20 66 635 159 701 8.06e-53 194
Msa0024390 AT1G70610.2 31.141 517 296 18 129 629 22 494 1.28e-52 189
Msa0024390 AT1G70610.1 31.141 517 296 18 129 629 203 675 1.48e-51 190
Msa0024390 AT4G28630.1 32.809 445 255 14 200 628 235 651 3.88e-51 188
Msa0024390 AT4G25450.3 28.571 553 310 13 126 629 4 520 7.39e-51 185
Msa0024390 AT1G27940.2 40.408 245 126 3 386 628 147 373 1.41e-50 189
Msa0024390 AT1G27940.2 39.033 269 144 5 363 628 755 1006 1.62e-49 186
Msa0024390 AT1G27940.1 40.408 245 126 3 386 628 361 587 3.15e-50 189
Msa0024390 AT1G27940.1 39.033 269 144 5 363 628 969 1220 2.74e-49 186
Msa0024390 AT2G36910.1 41.509 265 125 6 387 647 358 596 6.44e-50 188
Msa0024390 AT2G36910.1 36.111 288 156 8 363 642 988 1255 5.09e-46 176
Msa0024390 AT4G25450.1 28.470 562 317 13 117 629 164 689 8.18e-50 185
Msa0024390 AT2G47000.4 41.600 250 123 5 390 635 377 607 2.00e-49 186
Msa0024390 AT2G47000.3 41.600 250 123 5 390 635 377 607 2.24e-49 186
Msa0024390 AT2G47000.7 41.600 250 123 5 390 635 377 607 2.24e-49 186
Msa0024390 AT4G28620.1 31.498 454 247 14 208 628 231 653 2.31e-49 183
Msa0024390 AT2G47000.6 41.600 250 123 5 390 635 377 607 2.61e-49 186
Msa0024390 AT2G47000.6 30.699 544 315 18 111 636 769 1268 2.03e-47 181
Msa0024390 AT2G47000.5 41.600 250 123 5 390 635 377 607 2.61e-49 186
Msa0024390 AT2G47000.5 30.699 544 315 18 111 636 769 1268 2.03e-47 181
Msa0024390 AT2G47000.1 41.600 250 123 5 390 635 377 607 2.61e-49 186
Msa0024390 AT2G47000.1 30.699 544 315 18 111 636 769 1268 2.03e-47 181
Msa0024390 AT2G47000.2 41.600 250 123 5 390 635 377 607 3.14e-49 186
Msa0024390 AT2G47000.2 27.132 387 236 15 111 480 769 1126 2.14e-16 84.0
Msa0024390 AT1G10680.1 29.720 535 296 17 137 644 737 1218 3.24e-48 183
Msa0024390 AT1G10680.1 40.226 266 131 6 383 645 347 587 8.89e-48 181
Msa0024390 AT1G02520.1 41.339 254 123 6 384 628 361 597 4.36e-48 182
Msa0024390 AT1G02520.1 39.098 266 143 5 367 628 1001 1251 5.65e-44 170
Msa0024390 AT1G02520.2 41.339 254 123 6 384 628 361 597 4.36e-48 182
Msa0024390 AT1G02520.2 39.098 266 143 5 367 628 1001 1251 5.65e-44 170
Msa0024390 AT1G02520.3 41.339 254 123 6 384 628 361 597 4.36e-48 182
Msa0024390 AT1G02520.3 39.098 266 143 5 367 628 1001 1251 5.65e-44 170
Msa0024390 AT4G25960.1 39.179 268 143 5 363 628 997 1246 5.57e-48 182
Msa0024390 AT4G25960.1 41.699 259 130 5 390 645 394 634 3.52e-47 180
Msa0024390 AT1G10680.2 40.226 266 131 6 383 645 347 587 8.29e-48 182
Msa0024390 AT1G10680.2 29.436 479 262 17 137 592 737 1162 6.00e-38 152
Msa0024390 AT3G28860.1 29.559 521 311 16 122 628 748 1226 8.55e-48 182
Msa0024390 AT3G28860.1 29.159 535 316 16 111 628 93 581 9.31e-46 176
Msa0024390 AT3G62150.3 40.664 241 124 4 390 628 396 619 1.39e-47 181
Msa0024390 AT3G62150.3 41.600 250 127 5 390 636 1045 1278 1.36e-45 175
Msa0024390 AT3G62150.2 40.664 241 124 4 390 628 396 619 1.39e-47 181
Msa0024390 AT3G62150.2 41.600 250 127 5 390 636 1045 1278 1.36e-45 175
Msa0024390 AT3G62150.1 40.664 241 124 4 390 628 396 619 1.39e-47 181
Msa0024390 AT3G62150.1 41.600 250 127 5 390 636 1045 1278 1.36e-45 175
Msa0024390 AT4G18050.2 42.126 254 119 6 384 628 347 581 1.91e-47 181
Msa0024390 AT4G18050.2 41.569 255 125 4 386 635 992 1227 1.44e-45 175
Msa0024390 AT4G18050.1 42.126 254 119 6 384 628 337 571 1.91e-47 181
Msa0024390 AT4G18050.1 41.569 255 125 4 386 635 982 1217 1.48e-45 175
Msa0024390 AT4G01830.1 40.000 250 132 4 390 636 978 1212 4.98e-46 176
Msa0024390 AT4G01830.1 40.079 252 131 5 390 638 346 580 1.08e-45 175
Msa0024390 AT4G01830.2 40.000 250 132 4 390 636 744 978 5.08e-46 176
Msa0024390 AT4G01830.2 40.079 252 131 5 390 638 112 346 1.17e-45 175
Msa0024390 AT5G46540.1 41.434 251 123 4 390 635 998 1229 6.44e-46 176
Msa0024390 AT5G46540.1 31.490 416 245 12 228 628 183 573 6.93e-46 176
Msa0024390 AT1G02530.2 39.764 254 127 6 384 628 348 584 1.15e-45 175
Msa0024390 AT4G01820.2 40.152 264 133 6 384 638 328 575 1.61e-45 174
Msa0024390 AT1G02530.1 39.764 254 127 6 384 628 348 584 1.84e-45 174
Msa0024390 AT1G02530.1 38.722 266 144 5 367 628 996 1246 1.51e-43 169
Msa0024390 AT4G01820.1 40.152 264 133 6 384 638 328 575 2.56e-45 174
Msa0024390 AT4G01820.1 28.333 540 317 14 120 636 719 1211 7.42e-44 170
Msa0024390 AT3G55320.1 34.843 287 157 7 363 646 381 640 2.59e-38 153
Msa0024390 AT3G55320.1 36.667 240 130 6 393 628 1155 1376 2.83e-32 134
Msa0024390 AT2G39480.1 33.910 289 161 7 363 648 379 640 1.05e-37 151
Msa0024390 AT2G39480.1 36.145 249 137 6 393 637 1154 1384 1.49e-33 138
Msa0024390 AT2G39480.2 33.910 289 161 7 363 648 199 460 1.14e-37 150
Msa0024390 AT2G39480.2 36.667 240 130 6 393 628 974 1195 1.64e-33 138
Msa0024390 AT1G04120.1 28.519 270 165 5 367 629 1235 1483 1.58e-29 125
Msa0024390 AT1G04120.1 29.915 234 126 5 414 646 640 836 3.41e-18 90.1
Msa0024390 AT1G04120.3 28.519 270 165 5 367 629 1200 1448 1.79e-29 125
Msa0024390 AT1G04120.3 29.915 234 126 5 414 646 605 801 3.33e-18 90.1
Msa0024390 AT3G60160.1 28.800 250 161 3 395 644 1253 1485 2.09e-29 125
Msa0024390 AT3G60160.1 32.515 163 92 6 497 644 704 863 1.30e-13 75.1
Msa0024390 AT3G60160.3 28.800 250 161 3 395 644 1217 1449 2.30e-29 125
Msa0024390 AT3G60160.3 32.515 163 92 6 497 644 668 827 1.29e-13 75.1
Msa0024390 AT1G30400.2 32.389 247 148 3 394 638 1234 1463 3.42e-29 125
Msa0024390 AT1G30400.2 25.404 433 270 13 222 646 442 829 1.45e-19 94.4
Msa0024390 AT1G30400.1 32.389 247 148 3 394 638 1234 1463 3.42e-29 125
Msa0024390 AT1G30400.1 25.404 433 270 13 222 646 442 829 1.45e-19 94.4
Msa0024390 AT3G60970.1 27.046 281 185 4 367 644 769 1032 4.87e-29 124
Msa0024390 AT3G60970.1 28.251 223 123 5 414 629 232 424 1.29e-15 81.6
Msa0024390 AT3G59140.1 29.482 251 160 3 393 643 1203 1436 4.97e-29 124
Msa0024390 AT3G59140.1 28.241 216 124 4 414 628 620 805 6.16e-18 89.0
Msa0024390 AT2G34660.1 31.780 236 144 2 394 629 1239 1457 1.18e-28 123
Msa0024390 AT2G34660.1 25.542 415 263 12 222 628 442 818 1.67e-20 97.4
Msa0024390 AT2G34660.2 31.780 236 144 2 394 629 1239 1457 1.18e-28 123
Msa0024390 AT2G34660.2 25.542 415 263 12 222 628 442 818 1.67e-20 97.4
Msa0024390 AT3G13100.1 30.769 234 145 3 395 628 1239 1455 1.60e-28 122
Msa0024390 AT3G13100.1 31.544 149 91 3 499 646 700 838 1.70e-13 74.7
Msa0024390 AT2G34660.3 31.780 236 144 2 394 629 952 1170 1.90e-28 122
Msa0024390 AT2G34660.3 25.542 415 263 12 222 628 155 531 2.15e-20 97.1
Msa0024390 AT3G62700.1 31.197 234 144 2 395 628 1295 1511 1.95e-28 122
Msa0024390 AT3G62700.1 26.518 313 185 10 340 646 580 853 9.25e-20 95.1
Msa0024390 AT3G13100.2 30.769 234 145 3 395 628 994 1210 2.30e-28 122
Msa0024390 AT3G13100.2 31.544 149 91 3 499 646 455 593 2.69e-13 73.9
Msa0024390 AT1G04120.2 28.467 274 155 7 367 629 1235 1478 1.98e-27 119
Msa0024390 AT1G04120.2 29.915 234 126 5 414 646 640 836 3.35e-18 90.1
Msa0024390 AT1G30410.2 32.051 234 142 2 395 628 1233 1449 5.32e-27 117
Msa0024390 AT1G30410.6 32.051 234 142 2 395 628 1233 1449 5.32e-27 117
Msa0024390 AT1G30410.4 32.051 234 142 2 395 628 1233 1449 5.32e-27 117
Msa0024390 AT1G30410.1 32.051 234 142 2 395 628 1236 1452 5.37e-27 117
Msa0024390 AT1G30420.1 32.051 234 142 2 395 628 1233 1449 5.56e-27 117
Msa0024390 AT1G30420.1 23.866 419 261 14 222 628 447 819 6.15e-14 76.3
Msa0024390 AT1G30410.5 32.051 234 142 2 395 628 1118 1334 7.55e-27 117
Msa0024390 AT3G13090.1 29.060 234 149 3 395 628 1217 1433 9.25e-27 117
Msa0024390 AT3G13090.1 32.824 131 84 2 499 628 677 804 4.58e-13 73.6
Msa0024390 AT3G13080.1 29.060 234 149 3 395 628 1267 1483 1.55e-26 116
Msa0024390 AT3G13080.1 30.075 133 85 2 515 646 729 854 6.73e-12 69.7
Msa0024390 AT2G47800.1 30.213 235 147 2 395 629 1272 1489 2.91e-26 115
Msa0024390 AT2G47800.1 28.226 248 139 6 401 646 645 855 4.70e-18 89.4
Msa0024390 AT3G13080.5 28.632 234 150 3 395 628 1267 1483 2.11e-25 112
Msa0024390 AT3G13080.5 30.075 133 85 2 515 646 729 854 6.67e-12 69.7
Msa0024390 AT3G21250.1 27.778 234 152 2 395 628 1202 1418 5.43e-25 111
Msa0024390 AT3G21250.1 23.512 336 211 11 316 642 517 815 1.18e-16 85.1
Msa0024390 AT3G21250.5 27.778 234 152 2 395 628 1208 1424 5.49e-25 111
Msa0024390 AT3G21250.5 23.512 336 211 11 316 642 523 821 1.06e-16 85.1
Msa0024390 AT3G21250.4 27.778 234 152 2 395 628 1219 1435 5.56e-25 111
Msa0024390 AT3G21250.4 22.807 342 217 10 316 642 523 832 3.69e-18 89.7
Msa0024390 AT3G21250.2 27.778 234 152 2 395 628 1213 1429 5.85e-25 111
Msa0024390 AT3G21250.2 22.807 342 217 10 316 642 517 826 4.12e-18 89.7
Msa0024390 AT3G21250.6 27.778 234 152 2 395 628 797 1013 9.81e-25 110
Msa0024390 AT3G21250.6 22.807 342 217 10 316 642 101 410 4.30e-18 89.4
Msa0024390 AT3G21250.3 27.778 234 152 2 395 628 797 1013 9.81e-25 110
Msa0024390 AT3G21250.3 22.807 342 217 10 316 642 101 410 4.30e-18 89.4
Msa0024390 AT4G25450.2 24.082 490 287 13 117 557 164 617 2.66e-24 108
Msa0024390 AT1G67940.1 30.488 246 139 7 397 636 29 248 2.05e-23 100
Msa0024390 AT2G07680.4 27.304 293 184 5 337 628 1114 1378 2.85e-23 106
Msa0024390 AT2G07680.4 27.308 260 145 7 387 632 543 772 2.17e-15 80.9
Msa0024390 AT2G07680.1 27.304 293 184 5 337 628 1117 1381 2.98e-23 106
Msa0024390 AT2G07680.1 27.308 260 145 7 387 632 546 775 2.22e-15 80.9
Msa0024390 AT2G07680.6 27.304 293 184 5 337 628 1040 1304 3.06e-23 105
Msa0024390 AT2G07680.6 27.308 260 145 7 387 632 469 698 2.20e-15 80.9
Msa0024390 AT2G07680.3 27.304 293 184 5 337 628 1139 1403 3.10e-23 105
Msa0024390 AT2G07680.3 27.308 260 145 7 387 632 568 797 2.39e-15 80.9
Msa0024390 AT2G07680.5 27.304 293 184 5 337 628 1123 1387 3.40e-23 105
Msa0024390 AT2G07680.5 27.308 260 145 7 387 632 552 781 2.19e-15 80.9
Msa0024390 AT3G13080.2 25.641 234 132 2 395 628 1267 1458 4.92e-21 99.0
Msa0024390 AT3G13080.2 30.075 133 85 2 515 646 729 854 6.88e-12 69.7
Msa0024390 AT5G39040.2 24.378 402 255 7 117 508 132 494 5.62e-20 94.4
Msa0024390 AT1G31770.1 32.420 219 122 7 413 624 81 280 1.23e-16 84.3
Msa0024390 AT2G13610.1 27.049 244 142 7 407 642 56 271 3.13e-16 82.8
Msa0024390 AT3G13220.1 29.646 226 129 7 408 624 101 305 6.07e-16 82.0
Msa0024390 AT2G07680.2 27.308 260 145 7 387 632 568 797 1.91e-15 80.9
Msa0024390 AT5G19410.2 32.850 207 110 9 413 608 75 263 7.31e-15 78.6
Msa0024390 AT5G19410.1 33.178 214 100 10 413 608 66 254 7.39e-15 78.6
Msa0024390 AT5G52860.1 29.958 237 127 8 413 642 44 248 1.10e-14 77.8
Msa0024390 AT4G25750.1 30.165 242 139 8 413 649 30 246 1.97e-14 77.0
Msa0024390 AT1G30420.2 23.866 419 261 14 222 628 447 819 7.77e-14 75.9
Msa0024390 AT3G60160.2 32.515 163 92 6 497 644 704 863 9.40e-14 75.5
Msa0024390 AT3G60160.2 34.884 86 56 0 395 480 1253 1338 1.34e-11 68.6
Msa0024390 AT3G55110.1 27.731 238 137 9 401 625 79 294 1.23e-13 74.7
Msa0024390 AT5G61700.1 25.352 284 178 11 366 635 556 819 1.44e-13 74.7
Msa0024390 AT1G51500.1 29.596 223 129 7 412 625 43 246 1.76e-13 74.3
Msa0024390 AT1G65410.1 27.160 243 129 8 409 626 95 314 2.34e-13 72.4
Msa0024390 AT1G71960.1 30.973 226 120 11 413 625 83 285 2.64e-13 73.6
Msa0024390 AT5G06530.3 29.134 254 137 9 397 628 157 389 3.06e-13 73.6
Msa0024390 AT5G06530.2 29.134 254 137 9 397 628 157 389 4.12e-13 73.2
Msa0024390 AT5G06530.1 29.134 254 137 9 397 628 157 389 4.12e-13 73.2
Msa0024390 AT1G71330.1 31.356 118 80 1 515 631 1 118 9.93e-13 70.1
Msa0024390 AT2G37360.1 27.941 204 114 7 413 606 133 313 1.12e-12 71.6
Msa0024390 AT3G55130.1 27.234 235 136 10 404 625 90 302 1.18e-12 71.6
Msa0024390 AT1G51460.1 30.964 197 116 5 413 606 30 209 1.48e-12 71.2
Msa0024390 AT2G39350.1 26.050 238 134 8 413 631 109 323 2.35e-12 70.9
Msa0024390 AT3G47780.1 26.695 236 147 9 408 638 626 840 2.59e-12 70.9
Msa0024390 AT3G21090.1 29.694 229 133 8 406 625 37 246 2.75e-12 70.5
Msa0024390 AT3G55100.1 26.577 222 137 8 413 626 51 254 3.31e-12 70.1
Msa0024390 AT3G55100.2 26.577 222 137 8 413 626 51 254 3.31e-12 70.1
Msa0024390 AT3G55090.1 25.991 227 128 8 413 624 107 308 3.40e-12 70.1
Msa0024390 AT3G53510.1 28.431 204 113 7 413 606 126 306 3.50e-12 70.1
Msa0024390 AT3G47730.1 24.201 219 140 6 412 626 545 741 3.66e-12 70.5
Msa0024390 AT3G13080.3 30.075 133 85 2 515 646 729 854 4.79e-12 70.1
Msa0024390 AT3G13080.4 30.075 133 85 2 515 646 729 854 4.79e-12 70.1
Msa0024390 AT1G30410.3 35.185 108 56 1 395 502 1233 1326 4.87e-12 70.1
Msa0024390 AT3G47750.1 25.778 225 141 9 408 627 628 831 1.11e-11 68.6
Msa0024390 AT2G41700.2 28.947 228 136 7 414 638 498 702 1.36e-11 68.6
Msa0024390 AT2G41700.1 28.947 228 136 7 414 638 568 772 1.51e-11 68.6
Msa0024390 AT5G61690.2 24.771 218 140 6 412 626 546 742 1.82e-11 68.2
Msa0024390 AT5G61700.2 25.984 254 155 10 366 606 556 789 2.67e-11 67.4
Msa0024390 AT5G61700.4 25.984 254 155 10 366 606 556 789 2.67e-11 67.4
Msa0024390 AT4G27420.1 30.909 220 127 8 413 624 66 268 3.39e-11 67.0
Msa0024390 AT1G53270.1 28.507 221 129 9 413 624 50 250 9.51e-11 65.5

Find 165 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTCAGGCTATTTATTT+TGG 0.133141 1_1:-46827938 Msa0024390:CDS
TTGGATGGAGGTTTGGGTTT+GGG 0.179277 1_1:+46829888 None:intergenic
GTTCTAGTTGTTACCTTTCT+TGG 0.179934 1_1:-46828283 Msa0024390:CDS
AAATTCTTCTATATTGATTC+TGG 0.200160 1_1:-46825756 Msa0024390:CDS
AAGTAAATTTCTCACTTAAA+AGG 0.230858 1_1:-46824966 Msa0024390:three_prime_UTR
ATTGGATTGGATGGAGGTTT+GGG 0.237359 1_1:+46829882 None:intergenic
AGGAGACATCACAGAATTTC+AGG 0.237554 1_1:+46827171 None:intergenic
TTTCTTAATTGAGCCTATTC+AGG 0.241314 1_1:-46827825 Msa0024390:intron
ATGCACAACACGCGCTTCTT+TGG 0.244308 1_1:-46829574 Msa0024390:CDS
CATGAAGGTTCAAACCATTT+AGG 0.249997 1_1:+46827120 None:intergenic
TGAAAATTTACCTTTGCTTC+TGG 0.253834 1_1:+46826022 None:intergenic
AATTGGATTGGATGGAGGTT+TGG 0.261226 1_1:+46829881 None:intergenic
TGGAGGTTTGGGTTTGGGTT+TGG 0.264834 1_1:+46829893 None:intergenic
TTGCTGAAAGCATTGGTTAT+AGG 0.282402 1_1:-46826179 Msa0024390:CDS
ATTGGATGGAGGTTTGGGTT+TGG 0.286775 1_1:+46829887 None:intergenic
ACAAGCTGTGGAGCGTTTAA+TGG 0.290445 1_1:-46825687 Msa0024390:CDS
GGTGGTGACGGCGGAGAATT+TGG 0.290613 1_1:+46829670 None:intergenic
GTTGATTTGGACTATGTTAC+AGG 0.292806 1_1:-46827197 Msa0024390:CDS
GTTGCTATTGTTGGCCCGTC+TGG 0.296691 1_1:-46827080 Msa0024390:CDS
CACCGAACCTGCGCAAAGTA+TGG 0.300639 1_1:+46827907 None:intergenic
CATTATGTTTCTTGAGGAAA+TGG 0.300997 1_1:+46829952 None:intergenic
CGAGAGAAATCTCGCGAAAA+AGG 0.301406 1_1:+46830017 None:intergenic
TGCTGAAAGCATTGGTTATA+GGG 0.302928 1_1:-46826178 Msa0024390:CDS
GGCCTACCTCATATCCTAAA+TGG 0.306234 1_1:-46827134 Msa0024390:CDS
ATATTGGTATTGTATCCTTC+TGG 0.318377 1_1:+46826075 None:intergenic
TTCGGAATTTGGTTTGGAAT+TGG 0.321532 1_1:+46829864 None:intergenic
AGAATATTCCTCTTGGATAA+TGG 0.328281 1_1:-46825342 Msa0024390:CDS
GAAGGATACAATACCAATAT+TGG 0.336333 1_1:-46826072 Msa0024390:CDS
GAAACCAGATGCTGTTGATT+TGG 0.337327 1_1:-46827210 Msa0024390:CDS
TTGGATTGTGTTGTTGTTGT+TGG 0.337896 1_1:+46829787 None:intergenic
TAGGCCATCATTGTACTTAA+AGG 0.342548 1_1:+46827151 None:intergenic
ATGGTTTGAACCTTCATGTT+AGG 0.344582 1_1:-46827115 Msa0024390:CDS
CACTTGCAAAACTGTTGCTT+CGG 0.347951 1_1:-46827043 Msa0024390:CDS
TGAGCCTCTTGGTCCAATAT+TGG 0.353043 1_1:+46826059 None:intergenic
CGGCTTTATGACCCTATATC+TGG 0.354734 1_1:-46827023 Msa0024390:intron
AACTCTGCAAACGAATGTTC+TGG 0.355588 1_1:+46826802 None:intergenic
AGTAATTCCCCAGGTTATTC+AGG 0.357510 1_1:-46827951 Msa0024390:CDS
CATGATAACAATACCTGAAT+AGG 0.358481 1_1:+46827812 None:intergenic
ATTGCAGGTTATTCCTTGTA+TGG 0.365623 1_1:-46828305 Msa0024390:intron
TGCACAACACGCGCTTCTTT+GGG 0.366424 1_1:-46829573 Msa0024390:CDS
GGGATTCGCGCTCGGCGGTT+TGG 0.368627 1_1:-46829621 Msa0024390:CDS
ATAAACGGCTCACCAGATAT+AGG 0.371466 1_1:+46827011 None:intergenic
CACATATAGTTTCAAAATCA+TGG 0.388583 1_1:-46825177 Msa0024390:three_prime_UTR
TTGCTATTGTTGGCCCGTCT+GGG 0.392985 1_1:-46827079 Msa0024390:CDS
GCGAAGTTCTTGACCAAGAA+AGG 0.396160 1_1:+46828270 None:intergenic
TTCCATACTTTGCGCAGGTT+CGG 0.403033 1_1:-46827909 Msa0024390:CDS
GGAGAGATAGTTGCTATTGT+TGG 0.403468 1_1:-46827089 Msa0024390:CDS
CCACTTAAAGTTGAGCCTCT+TGG 0.403623 1_1:+46826048 None:intergenic
CACGTTAAGAAGAGCGTATA+AGG 0.409537 1_1:+46829400 None:intergenic
TTCAAACCATTTAGGATATG+AGG 0.415421 1_1:+46827128 None:intergenic
AGCAATATCCCCACTCGAAA+CGG 0.419822 1_1:+46829460 None:intergenic
TGGTTCGAAGGGAGGTGCTT+CGG 0.420084 1_1:+46829807 None:intergenic
TAGGAAAAGCTTACAATGAA+TGG 0.424642 1_1:-46827728 Msa0024390:CDS
TGGTTTGGAATTGGATTGGA+TGG 0.427123 1_1:+46829873 None:intergenic
GCTGATATCAAAGAAAGTTC+AGG 0.428520 1_1:+46828417 None:intergenic
TTGCAGAGAACTTGGTACTA+TGG 0.429606 1_1:+46828476 None:intergenic
GGCTAAAAGAATATTCCTCT+TGG 0.432858 1_1:-46825349 Msa0024390:CDS
TTTGGAGAGAAGGTTGGAAA+GGG 0.438225 1_1:+46829688 None:intergenic
CAGAGTCACTTGAGAGTGTC+AGG 0.442996 1_1:-46828033 Msa0024390:CDS
TCGGCGGTTTGGTTCTTGTT+CGG 0.443065 1_1:-46829610 Msa0024390:CDS
GCAGAAAATTGCAGAGAACT+TGG 0.447259 1_1:+46828468 None:intergenic
ATGGATTCATTGCTATCTTC+TGG 0.449042 1_1:-46825276 Msa0024390:CDS
GCAAACAAGCGTTCAATAGC+TGG 0.452836 1_1:+46827693 None:intergenic
TAGTCCAAATCAACAGCATC+TGG 0.452915 1_1:+46827206 None:intergenic
TTCATTTGATCGCTGTAGCT+TGG 0.457151 1_1:-46827870 Msa0024390:CDS
AATAAATAGCCTGAATAACC+TGG 0.460235 1_1:+46827942 None:intergenic
TTCGTTGAACGCGGTTTATG+AGG 0.460446 1_1:-46829546 Msa0024390:CDS
TAAACGGCTCACCAGATATA+GGG 0.460795 1_1:+46827012 None:intergenic
AAGGTTGGAAAGGGAGTAGA+CGG 0.461254 1_1:+46829697 None:intergenic
GCATTGCAGAAAAGTCCATC+AGG 0.470147 1_1:+46827996 None:intergenic
TGAGGAAATGGGAATGAGAA+TGG 0.470674 1_1:+46829964 None:intergenic
GAGTGTCAGGTTTAAGAGAC+TGG 0.472219 1_1:-46828020 Msa0024390:CDS
TTGAACCTTCATGTTAGGCC+TGG 0.472920 1_1:-46827110 Msa0024390:CDS
AATTTGGTTTGGAATTGGAT+TGG 0.473602 1_1:+46829869 None:intergenic
ATGCAAACATATGAATCAAA+TGG 0.476810 1_1:+46825228 None:intergenic
TTCTATATTGATTCTGGACG+AGG 0.477901 1_1:-46825750 Msa0024390:CDS
CAGAGCCAACCGTAGAGGAT+TGG 0.483918 1_1:+46829731 None:intergenic
GGTTGTTGTGGCGGTGGTGA+CGG 0.484096 1_1:+46829658 None:intergenic
ATTTGGAGAGAAGGTTGGAA+AGG 0.487740 1_1:+46829687 None:intergenic
CATTCAACATATTATACAAA+GGG 0.488400 1_1:+46828731 None:intergenic
ATTATGTTTCTTGAGGAAAT+GGG 0.491620 1_1:+46829953 None:intergenic
ACTTTCTTTGATATCAGCTA+TGG 0.492995 1_1:-46828412 Msa0024390:intron
TAAAGAATCACGCAGGATGT+AGG 0.494584 1_1:-46827747 Msa0024390:intron
TGCTATTGTTGGCCCGTCTG+GGG 0.498020 1_1:-46827078 Msa0024390:CDS
GTCACGCAGGGATTCGCGCT+CGG 0.508109 1_1:-46829629 Msa0024390:CDS
GCTTGTGATCTCTCATCGCT+TGG 0.508979 1_1:-46825385 Msa0024390:CDS
CCAAGAGGCTCAACTTTAAG+TGG 0.510650 1_1:-46826048 Msa0024390:CDS
TCGCTTGGAAACCGTTATGA+TGG 0.513065 1_1:-46825370 Msa0024390:CDS
GTTTAAGAGACTGGCCCTGA+TGG 0.513758 1_1:-46828011 Msa0024390:CDS
CATACTTTGCGCAGGTTCGG+TGG 0.518769 1_1:-46827906 Msa0024390:CDS
TTTGGAATTGGATTGGATGG+AGG 0.519291 1_1:+46829876 None:intergenic
GTTGTTGTTGTTGGTTCGAA+GGG 0.520060 1_1:+46829796 None:intergenic
AACGCTTGTTTGCTATGACC+AGG 0.521675 1_1:-46827683 Msa0024390:CDS
ACGATTGATGAACAAATCAA+TGG 0.522416 1_1:+46825013 None:intergenic
TGCAATGATAATGCATATGT+TGG 0.523394 1_1:-46828448 Msa0024390:CDS
GGTACAGTTGCTGAAAGCAT+TGG 0.524669 1_1:-46826186 Msa0024390:CDS
GGACGAGGCAACTTCTGCGT+TGG 0.525874 1_1:-46825735 Msa0024390:CDS
TGTTGTTGTTGTTGGTTCGA+AGG 0.528253 1_1:+46829795 None:intergenic
GTCTCCTTTAAGTACAATGA+TGG 0.530170 1_1:-46827155 Msa0024390:CDS
GTATAATATGTTGAATGAGA+AGG 0.531515 1_1:-46828725 Msa0024390:intron
GATGAGAGTGAACATGAGAT+TGG 0.532729 1_1:+46829929 None:intergenic
GGTAACGACGCCGTTTCGAG+TGG 0.533942 1_1:-46829470 Msa0024390:CDS
TCTCTTTATGTGTGCGCATG+TGG 0.536930 1_1:-46825152 Msa0024390:three_prime_UTR
ACTTCGCAAAATATCTAAGA+AGG 0.537461 1_1:-46828254 Msa0024390:CDS
CGGCGGAGAATTTGGAGAGA+AGG 0.538064 1_1:+46829678 None:intergenic
GAATCCCTGCGTGACGTCGA+CGG 0.544481 1_1:+46829637 None:intergenic
TGCAGATGCATAACGAATCA+CGG 0.546053 1_1:+46825045 None:intergenic
ACAATAGCAACTATCTCTCC+AGG 0.548439 1_1:+46827092 None:intergenic
CCTCGTTCTACTATGTTGAA+TGG 0.554792 1_1:-46825303 Msa0024390:CDS
GTTCTTTCCATACTTTGCGC+AGG 0.557361 1_1:-46827914 Msa0024390:CDS
GGAGAATTTGGAGAGAAGGT+TGG 0.557861 1_1:+46829682 None:intergenic
GCTATTGTTGGCCCGTCTGG+GGG 0.558455 1_1:-46827077 Msa0024390:CDS
ATAAATAGCCTGAATAACCT+GGG 0.561251 1_1:+46827943 None:intergenic
TCCAAGGAAAATTGAGCCAA+GGG 0.562182 1_1:+46824936 None:intergenic
TCTCTCCAGGCCTAACATGA+AGG 0.562303 1_1:+46827105 None:intergenic
TCATTCAACATATTATACAA+AGG 0.562436 1_1:+46828730 None:intergenic
CAGAGTTTAAGAAGACATGT+TGG 0.562645 1_1:-46826786 Msa0024390:CDS
GCTTACAATGAATGGAGAGA+AGG 0.564869 1_1:-46827720 Msa0024390:CDS
GAGAATGGAGTTTGAAACAT+GGG 0.565369 1_1:+46829979 None:intergenic
AACATATTATACAAAGGGAT+AGG 0.568709 1_1:+46828736 None:intergenic
GATTGGCATTATGTTTCTTG+AGG 0.568970 1_1:+46829946 None:intergenic
TGAGAATGGAGTTTGAAACA+TGG 0.573309 1_1:+46829978 None:intergenic
TTTATTAGAAAACTTCCAGA+AGG 0.574855 1_1:-46826090 Msa0024390:CDS
TTCCAAGGAAAATTGAGCCA+AGG 0.576098 1_1:+46824935 None:intergenic
TTGATTTGGACTATGTTACA+GGG 0.577115 1_1:-46827196 Msa0024390:CDS
CAAGCTTTCCATTATCCAAG+AGG 0.577336 1_1:+46825334 None:intergenic
TCTCTCAGCTTATCTGAATG+AGG 0.578614 1_1:-46828212 Msa0024390:intron
GGTTCGGTGGTGATTTCAAG+AGG 0.578745 1_1:-46827893 Msa0024390:CDS
GCAGATGCATAACGAATCAC+GGG 0.580097 1_1:+46825046 None:intergenic
TAAGTGGAGGCCAGAAGCAA+AGG 0.582508 1_1:-46826032 Msa0024390:intron
TACTATGTTGAATGGTCACA+TGG 0.582719 1_1:-46825295 Msa0024390:CDS
GTCGACGGTTGTTGTGGCGG+TGG 0.585158 1_1:+46829652 None:intergenic
CGCTGCAGAGCCAACCGTAG+AGG 0.589850 1_1:+46829726 None:intergenic
GTTGTTGTTGGTTCGAAGGG+AGG 0.603660 1_1:+46829799 None:intergenic
TTACAGGCTGGCTATTGCAA+GGG 0.604140 1_1:-46825789 Msa0024390:intron
AACAACCGTCGACGTCACGC+AGG 0.605708 1_1:-46829642 Msa0024390:CDS
CTTACAGGCTGGCTATTGCA+AGG 0.606094 1_1:-46825790 Msa0024390:intron
GTAACGACGCCGTTTCGAGT+GGG 0.606585 1_1:-46829469 Msa0024390:CDS
AAGAAGAGCGTATAAGGTAG+CGG 0.608177 1_1:+46829406 None:intergenic
GATGAAAGCAGTAATTCCCC+AGG 0.609146 1_1:-46827960 Msa0024390:CDS
CGTGACGTCGACGGTTGTTG+TGG 0.611347 1_1:+46829646 None:intergenic
TAACGACGCCGTTTCGAGTG+GGG 0.611528 1_1:-46829468 Msa0024390:CDS
CTTAAAAGGAGTCTGACCCT+TGG 0.615573 1_1:-46824952 Msa0024390:three_prime_UTR
GACGTCGACGGTTGTTGTGG+CGG 0.616457 1_1:+46829649 None:intergenic
CGCTTTCACAAAGAGATACG+CGG 0.623202 1_1:+46828063 None:intergenic
TTGGGAAGCTTCGTTGAACG+CGG 0.628873 1_1:-46829555 Msa0024390:CDS
TGTTCGATCGTGTGTTGCAG+AGG 0.633124 1_1:-46829511 Msa0024390:CDS
TGTTGTGGCGGTGGTGACGG+CGG 0.634312 1_1:+46829661 None:intergenic
AATACCAATATTGGACCAAG+AGG 0.636919 1_1:-46826063 Msa0024390:CDS
GCTTTCACAAAGAGATACGC+GGG 0.637972 1_1:+46828064 None:intergenic
ATGTTTGCATATCTACTGTG+AGG 0.639245 1_1:-46825215 Msa0024390:three_prime_UTR
CTCATATTCAAATTCAGACA+AGG 0.639888 1_1:+46825111 None:intergenic
GTAACAACTAGAACCATACA+AGG 0.646113 1_1:+46828292 None:intergenic
AAGCGCGTGTTGTGCATACG+TGG 0.649016 1_1:+46829580 None:intergenic
GCGTTTAATGGAAAATCGCA+CGG 0.651374 1_1:-46825675 Msa0024390:intron
ACAACCGTCGACGTCACGCA+GGG 0.654065 1_1:-46829641 Msa0024390:CDS
AGAGGCTCAACTTTAAGTGG+AGG 0.656903 1_1:-46826045 Msa0024390:CDS
ACGCAGGGATTCGCGCTCGG+CGG 0.660721 1_1:-46829626 Msa0024390:CDS
GTTCGATCGTGTGTTGCAGA+GGG 0.670470 1_1:-46829510 Msa0024390:CDS
CATTGCAGAAAAGTCCATCA+GGG 0.673067 1_1:+46827997 None:intergenic
AACCATTTAGGATATGAGGT+AGG 0.674813 1_1:+46827132 None:intergenic
TGATTTGGACTATGTTACAG+GGG 0.677901 1_1:-46827195 Msa0024390:CDS
TAAATAGCCTGAATAACCTG+GGG 0.687037 1_1:+46827944 None:intergenic
CCATTCAACATAGTAGAACG+AGG 0.706113 1_1:+46825303 None:intergenic
GTTGTTAGTGAGACAAGCTG+TGG 0.729540 1_1:-46825699 Msa0024390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAACTGTAAAATTTA+TGG - chr1_1:46825837-46825856 Msa0024390:intron 10.0%
!!! AACAAATTTTAAAAGTAAAT+TGG + chr1_1:46825987-46826006 None:intergenic 10.0%
!!! CAGAAATATATATTTTAAAA+GGG + chr1_1:46828459-46828478 None:intergenic 10.0%
!!! TCAGAAATATATATTTTAAA+AGG + chr1_1:46828460-46828479 None:intergenic 10.0%
!! TTAAATAAAATGAGAAATAG+AGG - chr1_1:46826272-46826291 Msa0024390:intron 15.0%
!!! AAAATTTTAAACAGTAAAAC+AGG + chr1_1:46827499-46827518 None:intergenic 15.0%
!!! AGCTTTTTTTAAAAAACAAA+GGG + chr1_1:46827681-46827700 None:intergenic 15.0%
!!! TAGCTTTTTTTAAAAAACAA+AGG + chr1_1:46827682-46827701 None:intergenic 15.0%
!!! ATACTTAATTTTATCATGTA+TGG - chr1_1:46827990-46828009 Msa0024390:CDS 15.0%
!! AATTAGTATAAGAAATGTAT+TGG + chr1_1:46828040-46828059 None:intergenic 15.0%
!!! ATATATATTTTAAAAGGGAT+TGG + chr1_1:46828454-46828473 None:intergenic 15.0%
!!! TTAATACATCATTTTGAATA+TGG + chr1_1:46828598-46828617 None:intergenic 15.0%
!! ACTGTAAAATTTATGGTTAA+TGG - chr1_1:46825844-46825863 Msa0024390:intron 20.0%
!!! GTTAATGGCATTTAAAATTA+TGG - chr1_1:46825859-46825878 Msa0024390:intron 20.0%
!! TCTAAAAAAATGAACATTAG+GGG + chr1_1:46826203-46826222 None:intergenic 20.0%
!!! CTCTAAAAAAATGAACATTA+GGG + chr1_1:46826204-46826223 None:intergenic 20.0%
!! CATTCAACATATTATACAAA+GGG + chr1_1:46826239-46826258 None:intergenic 20.0%
!! TCATTCAACATATTATACAA+AGG + chr1_1:46826240-46826259 None:intergenic 20.0%
!!! TACTTTTTAGTTCAATTGAT+TGG - chr1_1:46826414-46826433 Msa0024390:intron 20.0%
!! AAAATGTAAAACAATGGAAA+AGG + chr1_1:46827394-46827413 None:intergenic 20.0%
!! GAAAAGAAAATGTAAAACAA+TGG + chr1_1:46827400-46827419 None:intergenic 20.0%
!! GGAAATAAGAAAAAAAATCT+AGG - chr1_1:46827448-46827467 Msa0024390:intron 20.0%
!! ATAAGAAAAAAAATCTAGGA+TGG - chr1_1:46827452-46827471 Msa0024390:intron 20.0%
!!! CTTTTTTTAAAAAACAAAGG+GGG + chr1_1:46827679-46827698 None:intergenic 20.0%
!!! GCTTTTTTTAAAAAACAAAG+GGG + chr1_1:46827680-46827699 None:intergenic 20.0%
!! TTTCTTTCTTTCTGAATAAT+AGG - chr1_1:46827727-46827746 Msa0024390:CDS 20.0%
!!! TAAAAAATGTACAAGCTTTT+AGG - chr1_1:46828298-46828317 Msa0024390:CDS 20.0%
!! TGATAAACTAGTATAAATTC+AGG - chr1_1:46828361-46828380 Msa0024390:intron 20.0%
!! TAAATGATGAGGATAATTAT+AGG + chr1_1:46828489-46828508 None:intergenic 20.0%
!!! AAATTCTTCTATATTGATTC+TGG - chr1_1:46829211-46829230 Msa0024390:intron 20.0%
!! CAAAACTATAAGAATTACTA+AGG + chr1_1:46829501-46829520 None:intergenic 20.0%
!! AAGTAAATTTCTCACTTAAA+AGG - chr1_1:46830001-46830020 Msa0024390:five_prime_UTR 20.0%
! ATTATGTTTCTTGAGGAAAT+GGG + chr1_1:46825017-46825036 None:intergenic 25.0%
! CAGTGTAAAAAGTTCTATAT+AGG - chr1_1:46825740-46825759 Msa0024390:CDS 25.0%
! TTATGGTTTATTACGTTCAA+TGG - chr1_1:46825876-46825895 Msa0024390:intron 25.0%
!! GCTTGTTAATGAATATAACA+AGG + chr1_1:46825922-46825941 None:intergenic 25.0%
!! CCTCTAAAAAAATGAACATT+AGG + chr1_1:46826205-46826224 None:intergenic 25.0%
!!! CCTAATGTTCATTTTTTTAG+AGG - chr1_1:46826202-46826221 Msa0024390:intron 25.0%
! AACATATTATACAAAGGGAT+AGG + chr1_1:46826234-46826253 None:intergenic 25.0%
! GTATAATATGTTGAATGAGA+AGG - chr1_1:46826242-46826261 Msa0024390:intron 25.0%
! GAACATAAATGGAATTATTG+TGG + chr1_1:46826373-46826392 None:intergenic 25.0%
! GCAAATAAATGGAACATAAA+TGG + chr1_1:46826384-46826403 None:intergenic 25.0%
! TTCTTCTTAAAGTACAATGA+AGG + chr1_1:46826802-46826821 None:intergenic 25.0%
!! GTTATTCAGGCTATTTATTT+TGG - chr1_1:46827029-46827048 Msa0024390:CDS 25.0%
!!! ATTTACCTTATTTTTGAACC+TGG + chr1_1:46827305-46827324 None:intergenic 25.0%
!!! CTGAATTTTGTTTGAAATTG+AGG - chr1_1:46827427-46827446 Msa0024390:intron 25.0%
!!! CTGTTTAAAATTTTCTGTCA+AGG - chr1_1:46827505-46827524 Msa0024390:intron 25.0%
!!! GTTTTAACTGAAACAAAGTT+TGG - chr1_1:46828398-46828417 Msa0024390:intron 25.0%
!!! AACCAATTTTGAGACAAAAA+TGG + chr1_1:46828627-46828646 None:intergenic 25.0%
!!! TTTTTTAAAACTGGTTCTTG+TGG + chr1_1:46828651-46828670 None:intergenic 25.0%
!!! AGAACCAGTTTTAAAAAACT+TGG - chr1_1:46828653-46828672 Msa0024390:intron 25.0%
!!! GAACCAGTTTTAAAAAACTT+GGG - chr1_1:46828654-46828673 Msa0024390:intron 25.0%
! TTTATTAGAAAACTTCCAGA+AGG - chr1_1:46828877-46828896 Msa0024390:intron 25.0%
! TAACTTGATAAAGAAAACCA+TGG - chr1_1:46829027-46829046 Msa0024390:intron 25.0%
!! GTTTTCAATATGTTAGTCAT+TGG - chr1_1:46829459-46829478 Msa0024390:CDS 25.0%
!! TATTCTTTTAGCCATCATAA+CGG + chr1_1:46829611-46829630 None:intergenic 25.0%
! ATGCAAACATATGAATCAAA+TGG + chr1_1:46829742-46829761 None:intergenic 25.0%
! CACATATAGTTTCAAAATCA+TGG - chr1_1:46829790-46829809 Msa0024390:CDS 25.0%
!! AATAGATTTTCCAAATTCCA+AGG + chr1_1:46830050-46830069 None:intergenic 25.0%
CATTATGTTTCTTGAGGAAA+TGG + chr1_1:46825018-46825037 None:intergenic 30.0%
!! AATTTGGTTTGGAATTGGAT+TGG + chr1_1:46825101-46825120 None:intergenic 30.0%
!!! TTAGGTATGGTTTTAGGAAT+TGG + chr1_1:46825202-46825221 None:intergenic 30.0%
! ACCATTTTACACACAAACTT+TGG - chr1_1:46825641-46825660 Msa0024390:intron 30.0%
ACCAAAGTTTGTGTGTAAAA+TGG + chr1_1:46825645-46825664 None:intergenic 30.0%
! CTTCAAAAGTTTTACACTGT+AGG + chr1_1:46825696-46825715 None:intergenic 30.0%
! GTCATACAAAGTACCATATT+AGG + chr1_1:46826107-46826126 None:intergenic 30.0%
CGCAAATTTATTGTACTTTG+TGG - chr1_1:46826154-46826173 Msa0024390:CDS 30.0%
ATGAGAAATAGAGGATTGAA+TGG - chr1_1:46826281-46826300 Msa0024390:intron 30.0%
AAATAGAGGATTGAATGGTT+GGG - chr1_1:46826286-46826305 Msa0024390:intron 30.0%
TACAAGCAAAAACATGAGAA+GGG + chr1_1:46826336-46826355 None:intergenic 30.0%
ATGTTCCATTTATTTGCATG+CGG - chr1_1:46826387-46826406 Msa0024390:intron 30.0%
AAAAACCGCATGCAAATAAA+TGG + chr1_1:46826395-46826414 None:intergenic 30.0%
! TGCAATGATAATGCATATGT+TGG - chr1_1:46826519-46826538 Msa0024390:intron 30.0%
ACTTTCTTTGATATCAGCTA+TGG - chr1_1:46826555-46826574 Msa0024390:intron 30.0%
! TTCTGAAAGAACAATCAAGT+GGG + chr1_1:46826608-46826627 None:intergenic 30.0%
! TTTCTGAAAGAACAATCAAG+TGG + chr1_1:46826609-46826628 None:intergenic 30.0%
ATTGTTCTTTCAGAAAGACT+AGG - chr1_1:46826613-46826632 Msa0024390:intron 30.0%
ACTTCGCAAAATATCTAAGA+AGG - chr1_1:46826713-46826732 Msa0024390:intron 30.0%
ATAAATAGCCTGAATAACCT+GGG + chr1_1:46827027-46827046 None:intergenic 30.0%
AATAAATAGCCTGAATAACC+TGG + chr1_1:46827028-46827047 None:intergenic 30.0%
TTTCTTAATTGAGCCTATTC+AGG - chr1_1:46827142-46827161 Msa0024390:CDS 30.0%
CATGATAACAATACCTGAAT+AGG + chr1_1:46827158-46827177 None:intergenic 30.0%
! CTATTCAGGTATTGTTATCA+TGG - chr1_1:46827156-46827175 Msa0024390:CDS 30.0%
CTTAAAATAAAGAATCACGC+AGG - chr1_1:46827213-46827232 Msa0024390:CDS 30.0%
TAGGAAAAGCTTACAATGAA+TGG - chr1_1:46827239-46827258 Msa0024390:intron 30.0%
TATGACCAGGTTCAAAAATA+AGG - chr1_1:46827297-46827316 Msa0024390:intron 30.0%
TGTAAAACAATGGAAAAGGA+AGG + chr1_1:46827390-46827409 None:intergenic 30.0%
ACCATGTAATGTAATCTCAA+TGG - chr1_1:46827577-46827596 Msa0024390:intron 30.0%
TCCATTGAGATTACATTACA+TGG + chr1_1:46827581-46827600 None:intergenic 30.0%
!! TTGATTTGGACTATGTTACA+GGG - chr1_1:46827771-46827790 Msa0024390:intron 30.0%
! TTCAAACCATTTAGGATATG+AGG + chr1_1:46827842-46827861 None:intergenic 30.0%
TTATCATGTATGGTTTAGCA+TGG - chr1_1:46828000-46828019 Msa0024390:CDS 30.0%
TATCATGTATGGTTTAGCAT+GGG - chr1_1:46828001-46828020 Msa0024390:CDS 30.0%
! ATTCTTCTTCTTTTGTATGC+AGG - chr1_1:46828251-46828270 Msa0024390:CDS 30.0%
AACAGTATCAAACCAGTTAT+GGG + chr1_1:46828339-46828358 None:intergenic 30.0%
AAACAGTATCAAACCAGTTA+TGG + chr1_1:46828340-46828359 None:intergenic 30.0%
TTAAGGGTAGATAAATGATG+AGG + chr1_1:46828500-46828519 None:intergenic 30.0%
TAGAATGGAAAAGAGAGAAT+TGG - chr1_1:46828550-46828569 Msa0024390:intron 30.0%
!! CACCATTTTTGTCTCAAAAT+TGG - chr1_1:46828622-46828641 Msa0024390:intron 30.0%
ACTTCAATCTCAAATACTGA+TGG - chr1_1:46828733-46828752 Msa0024390:CDS 30.0%
!!! TGATTGTAGACACTTTTTTC+AGG - chr1_1:46828760-46828779 Msa0024390:intron 30.0%
TCTGACAACAAAAATTGACA+TGG - chr1_1:46828813-46828832 Msa0024390:intron 30.0%
ATATTGGTATTGTATCCTTC+TGG + chr1_1:46828895-46828914 None:intergenic 30.0%
GAAGGATACAATACCAATAT+TGG - chr1_1:46828895-46828914 Msa0024390:intron 30.0%
TGAAAATTTACCTTTGCTTC+TGG + chr1_1:46828948-46828967 None:intergenic 30.0%
TTATCAAGTCTGTTAGTTCA+TGG + chr1_1:46828998-46829017 None:intergenic 30.0%
CAAAATTAGCTGTTAATCCA+TGG + chr1_1:46829047-46829066 None:intergenic 30.0%
! TTCTGTTTGAAAAGAGCTTT+TGG - chr1_1:46829067-46829086 Msa0024390:intron 30.0%
CACATGACAAATAACAGAAA+AGG + chr1_1:46829330-46829349 None:intergenic 30.0%
AACATTCTTCCTATGTTCAT+AGG - chr1_1:46829558-46829577 Msa0024390:CDS 30.0%
AGAATATTCCTCTTGGATAA+TGG - chr1_1:46829625-46829644 Msa0024390:CDS 30.0%
CTCATATTCAAATTCAGACA+AGG + chr1_1:46829859-46829878 None:intergenic 30.0%
ACGATTGATGAACAAATCAA+TGG + chr1_1:46829957-46829976 None:intergenic 30.0%
! CGAAAAAGGTGAAACTTGTT+TGG + chr1_1:46824939-46824958 None:intergenic 35.0%
! GAGAATGGAGTTTGAAACAT+GGG + chr1_1:46824991-46825010 None:intergenic 35.0%
! TGAGAATGGAGTTTGAAACA+TGG + chr1_1:46824992-46825011 None:intergenic 35.0%
GATTGGCATTATGTTTCTTG+AGG + chr1_1:46825024-46825043 None:intergenic 35.0%
!! TTCGGAATTTGGTTTGGAAT+TGG + chr1_1:46825106-46825125 None:intergenic 35.0%
!!! TTTTGGTTCGGAATTTGGTT+TGG + chr1_1:46825112-46825131 None:intergenic 35.0%
!!! GTTGTTTTTGGTTCGGAATT+TGG + chr1_1:46825117-46825136 None:intergenic 35.0%
! TTGGATTGTGTTGTTGTTGT+TGG + chr1_1:46825183-46825202 None:intergenic 35.0%
!!! GTAGAGGATTGGTTTTTGTT+GGG + chr1_1:46825228-46825247 None:intergenic 35.0%
CAACAAAAACCAATCCTCTA+CGG - chr1_1:46825227-46825246 Msa0024390:three_prime_UTR 35.0%
AAGCTCACAACAGTACTTAT+TGG - chr1_1:46825713-46825732 Msa0024390:CDS 35.0%
AATGGATAACTTACGAGTTG+TGG - chr1_1:46825894-46825913 Msa0024390:intron 35.0%
! ATTTTTGTCACCCTGTTACA+TGG - chr1_1:46826070-46826089 Msa0024390:CDS 35.0%
CACAGATTCGTCATTTATTG+GGG + chr1_1:46826129-46826148 None:intergenic 35.0%
GCACAGATTCGTCATTTATT+GGG + chr1_1:46826130-46826149 None:intergenic 35.0%
TGCACAGATTCGTCATTTAT+TGG + chr1_1:46826131-46826150 None:intergenic 35.0%
TTATTGTACTTTGTGGTGTG+AGG - chr1_1:46826161-46826180 Msa0024390:CDS 35.0%
TATTGTACTTTGTGGTGTGA+GGG - chr1_1:46826162-46826181 Msa0024390:CDS 35.0%
GAAATAGAGGATTGAATGGT+TGG - chr1_1:46826285-46826304 Msa0024390:intron 35.0%
AATAGAGGATTGAATGGTTG+GGG - chr1_1:46826287-46826306 Msa0024390:intron 35.0%
CTACAAGCAAAAACATGAGA+AGG + chr1_1:46826337-46826356 None:intergenic 35.0%
GCTGATATCAAAGAAAGTTC+AGG + chr1_1:46826553-46826572 None:intergenic 35.0%
! GTTATGCTTTTGCAAATTGC+AGG - chr1_1:46826647-46826666 Msa0024390:intron 35.0%
ATTGCAGGTTATTCCTTGTA+TGG - chr1_1:46826662-46826681 Msa0024390:intron 35.0%
GTAACAACTAGAACCATACA+AGG + chr1_1:46826678-46826697 None:intergenic 35.0%
! GTTCTAGTTGTTACCTTTCT+TGG - chr1_1:46826684-46826703 Msa0024390:intron 35.0%
GGGGAAAAATATTGAACACA+GGG + chr1_1:46826865-46826884 None:intergenic 35.0%
CTGCAATGCTGAACAAAAAA+AGG - chr1_1:46826985-46827004 Msa0024390:intron 35.0%
TAAATAGCCTGAATAACCTG+GGG + chr1_1:46827026-46827045 None:intergenic 35.0%
! TTATCATGGTTCAGCTTTTG+AGG - chr1_1:46827170-46827189 Msa0024390:CDS 35.0%
TTCATGACCACTTGCTTAAA+AGG - chr1_1:46827324-46827343 Msa0024390:intron 35.0%
TAAAAGGCCCTATATGACAT+TGG - chr1_1:46827340-46827359 Msa0024390:intron 35.0%
TGCAGATCCAATGTCATATA+GGG + chr1_1:46827350-46827369 None:intergenic 35.0%
ATGCAGATCCAATGTCATAT+AGG + chr1_1:46827351-46827370 None:intergenic 35.0%
TAATGTAATCTCAATGGACG+AGG - chr1_1:46827583-46827602 Msa0024390:intron 35.0%
!! GTTGATTTGGACTATGTTAC+AGG - chr1_1:46827770-46827789 Msa0024390:intron 35.0%
! TGATTTGGACTATGTTACAG+GGG - chr1_1:46827772-46827791 Msa0024390:intron 35.0%
GTCTCCTTTAAGTACAATGA+TGG - chr1_1:46827812-46827831 Msa0024390:intron 35.0%
TAGGCCATCATTGTACTTAA+AGG + chr1_1:46827819-46827838 None:intergenic 35.0%
! AACCATTTAGGATATGAGGT+AGG + chr1_1:46827838-46827857 None:intergenic 35.0%
CATGAAGGTTCAAACCATTT+AGG + chr1_1:46827850-46827869 None:intergenic 35.0%
ATGGTTTGAACCTTCATGTT+AGG - chr1_1:46827852-46827871 Msa0024390:CDS 35.0%
ATTCATATTCTTATACGCGC+AGG - chr1_1:46828115-46828134 Msa0024390:intron 35.0%
CAGAGTTTAAGAAGACATGT+TGG - chr1_1:46828181-46828200 Msa0024390:intron 35.0%
! TACCCTTAAGATCTAGCTTA+AGG - chr1_1:46828511-46828530 Msa0024390:intron 35.0%
! ACCCTTAAGATCTAGCTTAA+GGG - chr1_1:46828512-46828531 Msa0024390:intron 35.0%
GAGAGAAAGGAAGAATAGAA+TGG - chr1_1:46828535-46828554 Msa0024390:intron 35.0%
GGAAAAGAGAGAATTGGAAA+TGG - chr1_1:46828556-46828575 Msa0024390:intron 35.0%
!!! GCACCCAAGTTTTTTAAAAC+TGG + chr1_1:46828660-46828679 None:intergenic 35.0%
! GTCTTTACACATAAGGTGTT+TGG + chr1_1:46828682-46828701 None:intergenic 35.0%
AACTAGATATCTAAGTGCAG+TGG + chr1_1:46828710-46828729 None:intergenic 35.0%
!! TTGCTGAAAGCATTGGTTAT+AGG - chr1_1:46828788-46828807 Msa0024390:intron 35.0%
!! TGCTGAAAGCATTGGTTATA+GGG - chr1_1:46828789-46828808 Msa0024390:intron 35.0%
AATACCAATATTGGACCAAG+AGG - chr1_1:46828904-46828923 Msa0024390:intron 35.0%
ACTTCGTTTCTCAAACTTAC+AGG - chr1_1:46829162-46829181 Msa0024390:intron 35.0%
!! TTCTATATTGATTCTGGACG+AGG - chr1_1:46829217-46829236 Msa0024390:intron 35.0%
! AGAATGTTTGAAGCTTCACA+GGG + chr1_1:46829546-46829565 None:intergenic 35.0%
! AAGAATGTTTGAAGCTTCAC+AGG + chr1_1:46829547-46829566 None:intergenic 35.0%
GGCTAAAAGAATATTCCTCT+TGG - chr1_1:46829618-46829637 Msa0024390:CDS 35.0%
TACTATGTTGAATGGTCACA+TGG - chr1_1:46829672-46829691 Msa0024390:CDS 35.0%
ATGGATTCATTGCTATCTTC+TGG - chr1_1:46829691-46829710 Msa0024390:CDS 35.0%
ATGTTTGCATATCTACTGTG+AGG - chr1_1:46829752-46829771 Msa0024390:CDS 35.0%
! GCTCAATTTTCCTTGGAATT+TGG - chr1_1:46830037-46830056 Msa0024390:five_prime_UTR 35.0%
TGAGGAAATGGGAATGAGAA+TGG + chr1_1:46825006-46825025 None:intergenic 40.0%
GATGAGAGTGAACATGAGAT+TGG + chr1_1:46825041-46825060 None:intergenic 40.0%
! ATTGGATTGGATGGAGGTTT+GGG + chr1_1:46825088-46825107 None:intergenic 40.0%
! AATTGGATTGGATGGAGGTT+TGG + chr1_1:46825089-46825108 None:intergenic 40.0%
! TTTGGAATTGGATTGGATGG+AGG + chr1_1:46825094-46825113 None:intergenic 40.0%
! TGGTTTGGAATTGGATTGGA+TGG + chr1_1:46825097-46825116 None:intergenic 40.0%
!!! AGTGGTGGTTGTTTTTGGTT+CGG + chr1_1:46825124-46825143 None:intergenic 40.0%
!!! TGCTTCGGATTTTTAGGTTC+GGG + chr1_1:46825148-46825167 None:intergenic 40.0%
!!! GTGCTTCGGATTTTTAGGTT+CGG + chr1_1:46825149-46825168 None:intergenic 40.0%
!! GTTGTTGTTGTTGGTTCGAA+GGG + chr1_1:46825174-46825193 None:intergenic 40.0%
!! TGTTGTTGTTGTTGGTTCGA+AGG + chr1_1:46825175-46825194 None:intergenic 40.0%
! TTTTGTTGGGAGGTTAGGTA+TGG + chr1_1:46825215-46825234 None:intergenic 40.0%
!! TTGGTTTTTGTTGGGAGGTT+AGG + chr1_1:46825220-46825239 None:intergenic 40.0%
!!! CGTAGAGGATTGGTTTTTGT+TGG + chr1_1:46825229-46825248 None:intergenic 40.0%
AAAAACCAATCCTCTACGGT+TGG - chr1_1:46825231-46825250 Msa0024390:three_prime_UTR 40.0%
TTTGGAGAGAAGGTTGGAAA+GGG + chr1_1:46825282-46825301 None:intergenic 40.0%
ATTTGGAGAGAAGGTTGGAA+AGG + chr1_1:46825283-46825302 None:intergenic 40.0%
!!! AGGGAACTTGCGTTTTTTGA+AGG - chr1_1:46825476-46825495 Msa0024390:intron 40.0%
! AAGAAGAGCGTATAAGGTAG+CGG + chr1_1:46825564-46825583 None:intergenic 40.0%
! CACGTTAAGAAGAGCGTATA+AGG + chr1_1:46825570-46825589 None:intergenic 40.0%
ACAATCCATGCCATGTAACA+GGG + chr1_1:46826083-46826102 None:intergenic 40.0%
TACAATCCATGCCATGTAAC+AGG + chr1_1:46826084-46826103 None:intergenic 40.0%
! GGCATGGATTGTACCTAATA+TGG - chr1_1:46826091-46826110 Msa0024390:CDS 40.0%
ATTGTACTTTGTGGTGTGAG+GGG - chr1_1:46826163-46826182 Msa0024390:CDS 40.0%
ATAGAGGATTGAATGGTTGG+GGG - chr1_1:46826288-46826307 Msa0024390:intron 40.0%
CTATGGTCTGTCAGAAACAA+GGG + chr1_1:46826477-46826496 None:intergenic 40.0%
ACTATGGTCTGTCAGAAACA+AGG + chr1_1:46826478-46826497 None:intergenic 40.0%
TTGCAGAGAACTTGGTACTA+TGG + chr1_1:46826494-46826513 None:intergenic 40.0%
GCAGAAAATTGCAGAGAACT+TGG + chr1_1:46826502-46826521 None:intergenic 40.0%
TCTCTCAGCTTATCTGAATG+AGG - chr1_1:46826755-46826774 Msa0024390:CDS 40.0%
CAAGATTTGCAAACAGTGCA+AGG + chr1_1:46826835-46826854 None:intergenic 40.0%
GGGGGAAAAATATTGAACAC+AGG + chr1_1:46826866-46826885 None:intergenic 40.0%
GCAGCATCTAATTGTTTAGG+GGG + chr1_1:46826884-46826903 None:intergenic 40.0%
GGCAGCATCTAATTGTTTAG+GGG + chr1_1:46826885-46826904 None:intergenic 40.0%
GGGCAGCATCTAATTGTTTA+GGG + chr1_1:46826886-46826905 None:intergenic 40.0%
CATTGCAGAAAAGTCCATCA+GGG + chr1_1:46826973-46826992 None:intergenic 40.0%
AGTAATTCCCCAGGTTATTC+AGG - chr1_1:46827016-46827035 Msa0024390:intron 40.0%
TTCATTTGATCGCTGTAGCT+TGG - chr1_1:46827097-46827116 Msa0024390:CDS 40.0%
TAAAGAATCACGCAGGATGT+AGG - chr1_1:46827220-46827239 Msa0024390:CDS 40.0%
GCTTACAATGAATGGAGAGA+AGG - chr1_1:46827247-46827266 Msa0024390:intron 40.0%
! TATAGGGCCTTTTAAGCAAG+TGG + chr1_1:46827334-46827353 None:intergenic 40.0%
! GAAACCAGATGCTGTTGATT+TGG - chr1_1:46827757-46827776 Msa0024390:intron 40.0%
TAGTCCAAATCAACAGCATC+TGG + chr1_1:46827764-46827783 None:intergenic 40.0%
AGGAGACATCACAGAATTTC+AGG + chr1_1:46827799-46827818 None:intergenic 40.0%
ACAATAGCAACTATCTCTCC+AGG + chr1_1:46827878-46827897 None:intergenic 40.0%
! GGAGAGATAGTTGCTATTGT+TGG - chr1_1:46827878-46827897 Msa0024390:CDS 40.0%
! CACTTGCAAAACTGTTGCTT+CGG - chr1_1:46827924-46827943 Msa0024390:CDS 40.0%
TAAACGGCTCACCAGATATA+GGG + chr1_1:46827958-46827977 None:intergenic 40.0%
ATAAACGGCTCACCAGATAT+AGG + chr1_1:46827959-46827978 None:intergenic 40.0%
AACTCTGCAAACGAATGTTC+TGG + chr1_1:46828168-46828187 None:intergenic 40.0%
!! ACAAGCTTTTAGGAGCAGTT+TGG - chr1_1:46828308-46828327 Msa0024390:intron 40.0%
CCCCTTAAGCTAGATCTTAA+GGG + chr1_1:46828516-46828535 None:intergenic 40.0%
! CCCTTAAGATCTAGCTTAAG+GGG - chr1_1:46828513-46828532 Msa0024390:intron 40.0%
TCCCCTTAAGCTAGATCTTA+AGG + chr1_1:46828517-46828536 None:intergenic 40.0%
!! GGAGCTAGTCTTTACACATA+AGG + chr1_1:46828689-46828708 None:intergenic 40.0%
GCGTTTAATGGAAAATCGCA+CGG - chr1_1:46829292-46829311 Msa0024390:intron 40.0%
TAATGGAAAATCGCACGGTA+TGG - chr1_1:46829297-46829316 Msa0024390:intron 40.0%
AAGCTTCACAGGGAAGAAAA+GGG + chr1_1:46829536-46829555 None:intergenic 40.0%
TCACAAGCACCTATGAACAT+AGG + chr1_1:46829570-46829589 None:intergenic 40.0%
CAAGCTTTCCATTATCCAAG+AGG + chr1_1:46829636-46829655 None:intergenic 40.0%
CCATTCAACATAGTAGAACG+AGG + chr1_1:46829667-46829686 None:intergenic 40.0%
CCTCGTTCTACTATGTTGAA+TGG - chr1_1:46829664-46829683 Msa0024390:CDS 40.0%
TGCAGATGCATAACGAATCA+CGG + chr1_1:46829925-46829944 None:intergenic 40.0%
TCCAAGGAAAATTGAGCCAA+GGG + chr1_1:46830034-46830053 None:intergenic 40.0%
TTCCAAGGAAAATTGAGCCA+AGG + chr1_1:46830035-46830054 None:intergenic 40.0%
CGAGAGAAATCTCGCGAAAA+AGG + chr1_1:46824953-46824972 None:intergenic 45.0%
! TTGGATGGAGGTTTGGGTTT+GGG + chr1_1:46825082-46825101 None:intergenic 45.0%
! ATTGGATGGAGGTTTGGGTT+TGG + chr1_1:46825083-46825102 None:intergenic 45.0%
!!! TTTTTAGGTTCGGGAAGTGG+TGG + chr1_1:46825139-46825158 None:intergenic 45.0%
!!! GGATTTTTAGGTTCGGGAAG+TGG + chr1_1:46825142-46825161 None:intergenic 45.0%
! GGGAGGTTAGGTATGGTTTT+AGG + chr1_1:46825208-46825227 None:intergenic 45.0%
!!! GAGGATTGGTTTTTGTTGGG+AGG + chr1_1:46825225-46825244 None:intergenic 45.0%
AAGGTTGGAAAGGGAGTAGA+CGG + chr1_1:46825273-46825292 None:intergenic 45.0%
GGAGAATTTGGAGAGAAGGT+TGG + chr1_1:46825288-46825307 None:intergenic 45.0%
TTCGTTGAACGCGGTTTATG+AGG - chr1_1:46825421-46825440 Msa0024390:intron 45.0%
AGCAATATCCCCACTCGAAA+CGG + chr1_1:46825510-46825529 None:intergenic 45.0%
TATCAGCTATGGTGAGTCAG+AGG - chr1_1:46826566-46826585 Msa0024390:intron 45.0%
GCGAAGTTCTTGACCAAGAA+AGG + chr1_1:46826700-46826719 None:intergenic 45.0%
CGGGCAGCATCTAATTGTTT+AGG + chr1_1:46826887-46826906 None:intergenic 45.0%
GCTTTCACAAAGAGATACGC+GGG + chr1_1:46826906-46826925 None:intergenic 45.0%
CGCTTTCACAAAGAGATACG+CGG + chr1_1:46826907-46826926 None:intergenic 45.0%
GAGTGTCAGGTTTAAGAGAC+TGG - chr1_1:46826947-46826966 Msa0024390:intron 45.0%
GCATTGCAGAAAAGTCCATC+AGG + chr1_1:46826974-46826993 None:intergenic 45.0%
GATGAAAGCAGTAATTCCCC+AGG - chr1_1:46827007-46827026 Msa0024390:intron 45.0%
GTTCTTTCCATACTTTGCGC+AGG - chr1_1:46827053-46827072 Msa0024390:CDS 45.0%
TTCCATACTTTGCGCAGGTT+CGG - chr1_1:46827058-46827077 Msa0024390:CDS 45.0%
!! AGCTTTTGAGGAGCTGTCTT+TGG - chr1_1:46827182-46827201 Msa0024390:CDS 45.0%
GCAAACAAGCGTTCAATAGC+TGG + chr1_1:46827277-46827296 None:intergenic 45.0%
!! AACGCTTGTTTGCTATGACC+AGG - chr1_1:46827284-46827303 Msa0024390:intron 45.0%
TAGATGACCTGATGTCCATG+AGG - chr1_1:46827532-46827551 Msa0024390:intron 45.0%
TTTACTGAGCTGACACCTCA+TGG + chr1_1:46827550-46827569 None:intergenic 45.0%
GGTTCAAATCTCCTCGAGAA+CGG - chr1_1:46827604-46827623 Msa0024390:intron 45.0%
! CCATTTTACAACCGTTCTCG+AGG + chr1_1:46827618-46827637 None:intergenic 45.0%
CCTCGAGAACGGTTGTAAAA+TGG - chr1_1:46827615-46827634 Msa0024390:intron 45.0%
GGCCTACCTCATATCCTAAA+TGG - chr1_1:46827833-46827852 Msa0024390:CDS 45.0%
TTGAACCTTCATGTTAGGCC+TGG - chr1_1:46827857-46827876 Msa0024390:CDS 45.0%
! CGGCTTTATGACCCTATATC+TGG - chr1_1:46827944-46827963 Msa0024390:CDS 45.0%
AGTTTGGCAACTCCCATAAC+TGG - chr1_1:46828324-46828343 Msa0024390:intron 45.0%
! TCTAGCTTAAGGGGAGAGAA+AGG - chr1_1:46828522-46828541 Msa0024390:intron 45.0%
! GGTACAGTTGCTGAAAGCAT+TGG - chr1_1:46828781-46828800 Msa0024390:intron 45.0%
TGAGCCTCTTGGTCCAATAT+TGG + chr1_1:46828911-46828930 None:intergenic 45.0%
CCACTTAAAGTTGAGCCTCT+TGG + chr1_1:46828922-46828941 None:intergenic 45.0%
CCAAGAGGCTCAACTTTAAG+TGG - chr1_1:46828919-46828938 Msa0024390:intron 45.0%
AGAGGCTCAACTTTAAGTGG+AGG - chr1_1:46828922-46828941 Msa0024390:intron 45.0%
CGTTTCTCAAACTTACAGGC+TGG - chr1_1:46829166-46829185 Msa0024390:intron 45.0%
! TTACAGGCTGGCTATTGCAA+GGG - chr1_1:46829178-46829197 Msa0024390:intron 45.0%
GTTGTTAGTGAGACAAGCTG+TGG - chr1_1:46829268-46829287 Msa0024390:intron 45.0%
! ACAAGCTGTGGAGCGTTTAA+TGG - chr1_1:46829280-46829299 Msa0024390:intron 45.0%
GAAGCTTCACAGGGAAGAAA+AGG + chr1_1:46829537-46829556 None:intergenic 45.0%
TCGCTTGGAAACCGTTATGA+TGG - chr1_1:46829597-46829616 Msa0024390:CDS 45.0%
TCTCTTTATGTGTGCGCATG+TGG - chr1_1:46829815-46829834 Msa0024390:CDS 45.0%
GCAGATGCATAACGAATCAC+GGG + chr1_1:46829924-46829943 None:intergenic 45.0%
CTTAAAAGGAGTCTGACCCT+TGG - chr1_1:46830015-46830034 Msa0024390:five_prime_UTR 45.0%
! ACCCTTGGCTCAATTTTCCT+TGG - chr1_1:46830030-46830049 Msa0024390:five_prime_UTR 45.0%
!! GTATATTTATATTAAATAAA+CGG + chr1_1:46827974-46827993 None:intergenic 5.0%
! TGGAGGTTTGGGTTTGGGTT+TGG + chr1_1:46825077-46825096 None:intergenic 50.0%
!! CGGGAAGTGGTGGTTGTTTT+TGG + chr1_1:46825129-46825148 None:intergenic 50.0%
!!! GGGAGGTGCTTCGGATTTTT+AGG + chr1_1:46825154-46825173 None:intergenic 50.0%
!! GTTGTTGTTGGTTCGAAGGG+AGG + chr1_1:46825171-46825190 None:intergenic 50.0%
!! TCGGCGGTTTGGTTCTTGTT+CGG - chr1_1:46825357-46825376 Msa0024390:CDS 50.0%
ATGCACAACACGCGCTTCTT+TGG - chr1_1:46825393-46825412 Msa0024390:intron 50.0%
TGCACAACACGCGCTTCTTT+GGG - chr1_1:46825394-46825413 Msa0024390:intron 50.0%
TTGGGAAGCTTCGTTGAACG+CGG - chr1_1:46825412-46825431 Msa0024390:intron 50.0%
TGTTCGATCGTGTGTTGCAG+AGG - chr1_1:46825456-46825475 Msa0024390:intron 50.0%
GTTCGATCGTGTGTTGCAGA+GGG - chr1_1:46825457-46825476 Msa0024390:intron 50.0%
TGTCACCCTGTTACATGGCA+TGG - chr1_1:46826075-46826094 Msa0024390:CDS 50.0%
!! CAGAGTCACTTGAGAGTGTC+AGG - chr1_1:46826934-46826953 Msa0024390:intron 50.0%
! GTTTAAGAGACTGGCCCTGA+TGG - chr1_1:46826956-46826975 Msa0024390:intron 50.0%
!! GGTTCGGTGGTGATTTCAAG+AGG - chr1_1:46827074-46827093 Msa0024390:CDS 50.0%
TCTCTCCAGGCCTAACATGA+AGG + chr1_1:46827865-46827884 None:intergenic 50.0%
! TTGCTATTGTTGGCCCGTCT+GGG - chr1_1:46827888-46827907 Msa0024390:CDS 50.0%
!! TTGTTTTTCCTCCCCCAGAC+GGG + chr1_1:46827904-46827923 None:intergenic 50.0%
!!! GTTGTTTTTCCTCCCCCAGA+CGG + chr1_1:46827905-46827924 None:intergenic 50.0%
TAAGTGGAGGCCAGAAGCAA+AGG - chr1_1:46828935-46828954 Msa0024390:intron 50.0%
! CTTACAGGCTGGCTATTGCA+AGG - chr1_1:46829177-46829196 Msa0024390:intron 50.0%
GCTTGTGATCTCTCATCGCT+TGG - chr1_1:46829582-46829601 Msa0024390:CDS 50.0%
!! TGGTTCGAAGGGAGGTGCTT+CGG + chr1_1:46825163-46825182 None:intergenic 55.0%
CAGAGCCAACCGTAGAGGAT+TGG + chr1_1:46825239-46825258 None:intergenic 55.0%
CGGCGGAGAATTTGGAGAGA+AGG + chr1_1:46825292-46825311 None:intergenic 55.0%
AAGCGCGTGTTGTGCATACG+TGG + chr1_1:46825390-46825409 None:intergenic 55.0%
! GTAACGACGCCGTTTCGAGT+GGG - chr1_1:46825498-46825517 Msa0024390:intron 55.0%
! TAACGACGCCGTTTCGAGTG+GGG - chr1_1:46825499-46825518 Msa0024390:intron 55.0%
ACTTTGTGGTGTGAGGGGCA+TGG - chr1_1:46826168-46826187 Msa0024390:CDS 55.0%
! CTTTGTGGTGTGAGGGGCAT+GGG - chr1_1:46826169-46826188 Msa0024390:CDS 55.0%
CACCGAACCTGCGCAAAGTA+TGG + chr1_1:46827063-46827082 None:intergenic 55.0%
CATACTTTGCGCAGGTTCGG+TGG - chr1_1:46827061-46827080 Msa0024390:CDS 55.0%
GCTGACACCTCATGGACATC+AGG + chr1_1:46827542-46827561 None:intergenic 55.0%
! GTTGCTATTGTTGGCCCGTC+TGG - chr1_1:46827887-46827906 Msa0024390:CDS 55.0%
TGCTATTGTTGGCCCGTCTG+GGG - chr1_1:46827889-46827908 Msa0024390:CDS 55.0%
!! GGTGGTGACGGCGGAGAATT+TGG + chr1_1:46825300-46825319 None:intergenic 60.0%
GGTTGTTGTGGCGGTGGTGA+CGG + chr1_1:46825312-46825331 None:intergenic 60.0%
GACGTCGACGGTTGTTGTGG+CGG + chr1_1:46825321-46825340 None:intergenic 60.0%
CGTGACGTCGACGGTTGTTG+TGG + chr1_1:46825324-46825343 None:intergenic 60.0%
AACAACCGTCGACGTCACGC+AGG - chr1_1:46825325-46825344 Msa0024390:CDS 60.0%
ACAACCGTCGACGTCACGCA+GGG - chr1_1:46825326-46825345 Msa0024390:CDS 60.0%
GAATCCCTGCGTGACGTCGA+CGG + chr1_1:46825333-46825352 None:intergenic 60.0%
GGTAACGACGCCGTTTCGAG+TGG - chr1_1:46825497-46825516 Msa0024390:intron 60.0%
GCTATTGTTGGCCCGTCTGG+GGG - chr1_1:46827890-46827909 Msa0024390:CDS 60.0%
GGACGAGGCAACTTCTGCGT+TGG - chr1_1:46829232-46829251 Msa0024390:intron 60.0%
CGCTGCAGAGCCAACCGTAG+AGG + chr1_1:46825244-46825263 None:intergenic 65.0%
!! TGTTGTGGCGGTGGTGACGG+CGG + chr1_1:46825309-46825328 None:intergenic 65.0%
GTCGACGGTTGTTGTGGCGG+TGG + chr1_1:46825318-46825337 None:intergenic 65.0%
GTCACGCAGGGATTCGCGCT+CGG - chr1_1:46825338-46825357 Msa0024390:CDS 65.0%
ATTGTTGGCCCGTCTGGGGG+AGG - chr1_1:46827893-46827912 Msa0024390:CDS 65.0%
ACGCAGGGATTCGCGCTCGG+CGG - chr1_1:46825341-46825360 Msa0024390:CDS 70.0%
GGGATTCGCGCTCGGCGGTT+TGG - chr1_1:46825346-46825365 Msa0024390:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 46824920 46830069 46824920 ID=Msa0024390;Name=Msa0024390
chr1_1 mRNA 46824920 46830069 46824920 ID=Msa0024390-mRNA-1;Parent=Msa0024390;Name=Msa0024390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=115|0.7|0.81|0.90|1|1|11|343|649
chr1_1 exon 46824920 46825409 46824920 ID=Msa0024390-mRNA-1:exon:13363;Parent=Msa0024390-mRNA-1
chr1_1 exon 46825676 46825805 46825676 ID=Msa0024390-mRNA-1:exon:13362;Parent=Msa0024390-mRNA-1
chr1_1 exon 46826033 46826220 46826033 ID=Msa0024390-mRNA-1:exon:13361;Parent=Msa0024390-mRNA-1
chr1_1 exon 46826725 46826852 46826725 ID=Msa0024390-mRNA-1:exon:13360;Parent=Msa0024390-mRNA-1
chr1_1 exon 46827024 46827240 46827024 ID=Msa0024390-mRNA-1:exon:13359;Parent=Msa0024390-mRNA-1
chr1_1 exon 46827671 46827754 46827671 ID=Msa0024390-mRNA-1:exon:13358;Parent=Msa0024390-mRNA-1
chr1_1 exon 46827826 46828092 46827826 ID=Msa0024390-mRNA-1:exon:13357;Parent=Msa0024390-mRNA-1
chr1_1 exon 46828213 46828320 46828213 ID=Msa0024390-mRNA-1:exon:13356;Parent=Msa0024390-mRNA-1
chr1_1 exon 46828413 46828499 46828413 ID=Msa0024390-mRNA-1:exon:13355;Parent=Msa0024390-mRNA-1
chr1_1 exon 46828726 46828767 46828726 ID=Msa0024390-mRNA-1:exon:13354;Parent=Msa0024390-mRNA-1
chr1_1 exon 46829403 46830069 46829403 ID=Msa0024390-mRNA-1:exon:13353;Parent=Msa0024390-mRNA-1
chr1_1 five_prime_UTR 46829955 46830069 46829955 ID=Msa0024390-mRNA-1:five_prime_utr;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46829403 46829954 46829403 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46828726 46828767 46828726 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46828413 46828499 46828413 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46828213 46828320 46828213 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46827826 46828092 46827826 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46827671 46827754 46827671 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46827024 46827240 46827024 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46826725 46826852 46826725 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46826033 46826220 46826033 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46825676 46825805 46825676 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 CDS 46825263 46825409 46825263 ID=Msa0024390-mRNA-1:cds;Parent=Msa0024390-mRNA-1
chr1_1 three_prime_UTR 46824920 46825262 46824920 ID=Msa0024390-mRNA-1:three_prime_utr;Parent=Msa0024390-mRNA-1
Gene Sequence

>Msa0024390

ATGCCAATCTCATGTTCACTCTCATCATCATTCATTCTTCCAAACCCAAACCCAAACCTCCATCCAATCCAATTCCAAACCAAATTCCGAACCAAAAACAACCACCACTTCCCGAACCTAAAAATCCGAAGCACCTCCCTTCGAACCAACAACAACAACACAATCCAATTCCTAAAACCATACCTAACCTCCCAACAAAAACCAATCCTCTACGGTTGGCTCTGCAGCGCAATCTCCGTCTACTCCCTTTCCAACCTTCTCTCCAAATTCTCCGCCGTCACCACCGCCACAACAACCGTCGACGTCACGCAGGGATTCGCGCTCGGCGGTTTGGTTCTTGTTCGGTTGATTGCCACGTATGCACAACACGCGCTTCTTTGGGAAGCTTCGTTGAACGCGGTTTATGAGGTTCGTGTTCATGTGTTCGATCGTGTGTTGCAGAGGGAACTTGCGTTTTTTGAAGGTAACGACGCCGTTTCGAGTGGGGATATTGCTTATCGTATTACTGCTGAAGCTTCTGATCTTGCCGCTACCTTATACGCTCTTCTTAACAGGTTAAATCCTATCCCTTTGTATAATATGTTGAATGAGAAGACCATAGTACCAAGTTCTCTGCAATTTTCTGCAATGATAATGCATATGTTGGCTATAAGTCCTGAACTTTCTTTGATATCAGCTATGGTTATTCCTTGTATGGTTCTAGTTGTTACCTTTCTTGGTCAAGAACTTCGCAAAATATCTAAGAAGGCACATATTAGCATTGCTGCTCTCTCAGCTTATCTGAATGAGATGCTGCCCGCGTATCTCTTTGTGAAAGCGAACAACGCAGAGTCACTTGAGAGTGTCAGGTTTAAGAGACTGGCCCTGATGGACTTTTCTGCAATGCTGAACAAAAAAAGGATGAAAGCAGTAATTCCCCAGGTTATTCAGGCTATTTATTTTGGAGTTCTTTCCATACTTTGCGCAGGTTCGGTGGTGATTTCAAGAGGTTCATTTGATCGCTGTAGCTTGGTTTCATTTGTGACGTCATTGCTTTTCTTAATTGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGAGAAGGAGAGCCAGCTATTGAACGCTTGTTTGCTATGACCAGGTTCAAAAATAAGGTAGTTGAGAAACCAGATGCTGTTGATTTGGACTATGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTAAGTACAATGATGGCCTACCTCATATCCTAAATGGTTTGAACCTTCATGTTAGGCCTGGAGAGATAGTTGCTATTGTTGGCCCGTCTGGGGGAGGAAAAACAACACTTGCAAAACTGTTGCTTCGGCTTTATGACCCTATATCTGGTTCTATACTGATTGATAACGAAAACATCCAGAACATTCGTTTGCAGAGTTTAAGAAGACATGTTGGTGTAGTTTCTCAAGATATAGTAAGTGATTCATCACTCAAGCTTCTGTATTCTTCTTCTTTTACACTTTTTTCAGGTACAGTTGCTGAAAGCATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAAAGTGAAGCATGTAGCTCAAACTGCTTATGCAGACGAGTTTATTAGAAAACTTCCAGAAGGATACAATACCAATATTGGACCAAGAGGCTCAACTTTAAGTGGAGGCCAGAAGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTGATTCTGGACGAGGCAACTTCTGCGTTGGATAGTAAATCTGAGTTGTTAGTGAGACAAGCTGTGGAGCGTTTAATGGAAAATCGCACGGTGCTTGTGATCTCTCATCGCTTGGAAACCGTTATGATGGCTAAAAGAATATTCCTCTTGGATAATGGAAAGCTTGAAGAGCTGCCTCGTTCTACTATGTTGAATGGTCACATGGATTCATTGCTATCTTCTGGTCATATTGTTTGA
Protein sequence

>Msa0024390

MPISCSLSSSFILPNPNPNLHPIQFQTKFRTKNNHHFPNLKIRSTSLRTNNNNTIQFLKPYLTSQQKPILYGWLCSAISVYSLSNLLSKFSAVTTATTTVDVTQGFALGGLVLVRLIATYAQHALLWEASLNAVYEVRVHVFDRVLQRELAFFEGNDAVSSGDIAYRITAEASDLAATLYALLNRLNPIPLYNMLNEKTIVPSSLQFSAMIMHMLAISPELSLISAMVIPCMVLVVTFLGQELRKISKKAHISIAALSAYLNEMLPAYLFVKANNAESLESVRFKRLALMDFSAMLNKKRMKAVIPQVIQAIYFGVLSILCAGSVVISRGSFDRCSLVSFVTSLLFLIEPIQDVGKAYNEWREGEPAIERLFAMTRFKNKVVEKPDAVDLDYVTGDLKFCDVSFKYNDGLPHILNGLNLHVRPGEIVAIVGPSGGGKTTLAKLLLRLYDPISGSILIDNENIQNIRLQSLRRHVGVVSQDIVSDSSLKLLYSSSFTLFSGTVAESIGYRDLTTKIDMEKVKHVAQTAYADEFIRKLPEGYNTNIGPRGSTLSGGQKQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNGKLEELPRSTMLNGHMDSLLSSGHIV*