AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120210 MtrunA17_Chr1g0178481 96.940 621 16 2 1 621 1 618 0.0 1230
Msa0120210 MtrunA17_Chr4g0061601 32.400 500 316 7 111 600 117 604 1.51e-68 234
Msa0120210 MtrunA17_Chr6g0452061 30.651 522 324 11 110 618 262 758 5.34e-65 228
Msa0120210 MtrunA17_Chr6g0452061 51.807 83 40 0 519 601 17 99 4.49e-18 88.6
Msa0120210 MtrunA17_Chr6g0452111 30.624 529 322 11 110 618 744 1247 3.94e-63 226
Msa0120210 MtrunA17_Chr6g0452111 40.511 274 153 5 349 617 333 601 9.56e-48 181
Msa0120210 MtrunA17_Chr6g0452141 30.132 531 330 9 106 618 739 1246 7.21e-62 223
Msa0120210 MtrunA17_Chr6g0452141 44.309 246 128 4 376 617 355 595 3.93e-49 184
Msa0120210 MtrunA17_Chr6g0452171 29.831 533 329 10 106 618 742 1249 2.74e-60 218
Msa0120210 MtrunA17_Chr6g0452171 40.942 276 153 5 347 617 324 594 2.12e-49 186
Msa0120210 MtrunA17_Chr6g0451911 30.345 580 355 13 57 618 695 1243 3.08e-60 218
Msa0120210 MtrunA17_Chr6g0451911 41.971 274 149 5 349 617 326 594 1.98e-49 186
Msa0120210 MtrunA17_Chr6g0452041 30.150 534 328 11 105 618 740 1248 1.36e-59 216
Msa0120210 MtrunA17_Chr6g0452041 40.511 274 153 5 349 617 326 594 5.76e-48 181
Msa0120210 MtrunA17_Chr3g0123411 32.520 492 294 13 137 608 657 1130 1.57e-59 215
Msa0120210 MtrunA17_Chr3g0123411 29.769 477 310 9 137 600 1 465 3.82e-45 172
Msa0120210 MtrunA17_Chr1g0156821 33.131 495 283 13 137 607 747 1217 1.35e-58 213
Msa0120210 MtrunA17_Chr1g0156821 41.558 231 129 2 372 600 362 588 9.57e-44 168
Msa0120210 MtrunA17_Chr6g0452071 38.413 315 179 5 309 618 138 442 1.03e-57 201
Msa0120210 MtrunA17_Chr7g0227391 31.365 491 288 13 134 600 178 643 7.50e-57 203
Msa0120210 MtrunA17_Chr6g0474071 32.134 417 229 7 235 601 20 432 7.51e-57 198
Msa0120210 MtrunA17_Chr6g0451881 30.648 509 295 15 137 618 759 1236 1.20e-56 207
Msa0120210 MtrunA17_Chr6g0451881 44.541 229 118 4 376 600 354 577 1.44e-48 183
Msa0120210 MtrunA17_Chr5g0412741 31.200 500 318 12 129 618 204 687 1.36e-56 203
Msa0120210 MtrunA17_Chr4g0041871 31.134 485 293 14 137 600 758 1222 2.24e-56 206
Msa0120210 MtrunA17_Chr4g0041871 30.185 487 296 13 137 600 94 559 5.62e-49 184
Msa0120210 MtrunA17_Chr2g0285191 30.651 522 335 10 110 617 779 1287 6.96e-56 205
Msa0120210 MtrunA17_Chr2g0285191 29.072 485 301 11 137 600 152 614 1.49e-51 192
Msa0120210 MtrunA17_Chr5g0433051 33.475 469 275 15 163 607 233 688 1.52e-55 200
Msa0120210 MtrunA17_Chr7g0264631 29.828 523 341 13 106 614 802 1312 2.04e-55 203
Msa0120210 MtrunA17_Chr7g0264631 29.259 499 315 13 136 619 179 654 5.04e-53 196
Msa0120210 MtrunA17_Chr5g0433071 33.864 440 273 9 175 607 262 690 1.38e-54 197
Msa0120210 MtrunA17_Chr4g0069351 31.213 503 304 12 134 618 786 1264 6.45e-54 199
Msa0120210 MtrunA17_Chr4g0069351 43.802 242 120 6 370 600 358 594 9.26e-51 189
Msa0120210 MtrunA17_Chr1g0180601 41.328 271 144 5 353 619 368 627 1.94e-53 197
Msa0120210 MtrunA17_Chr1g0180601 39.483 271 156 6 349 614 1019 1286 7.56e-52 193
Msa0120210 MtrunA17_Chr7g0233901 28.937 508 330 9 111 601 722 1215 2.01e-53 197
Msa0120210 MtrunA17_Chr7g0233901 39.636 275 141 7 355 617 322 583 2.25e-47 179
Msa0120210 MtrunA17_Chr2g0285311 27.699 491 340 9 117 600 103 585 6.06e-53 196
Msa0120210 MtrunA17_Chr2g0285311 29.755 531 328 15 110 617 751 1259 3.06e-50 188
Msa0120210 MtrunA17_Chr2g0285301 27.655 499 335 10 117 600 93 580 6.39e-53 196
Msa0120210 MtrunA17_Chr2g0285301 30.545 514 326 12 110 607 747 1245 4.61e-52 193
Msa0120210 MtrunA17_Chr6g0481921 28.481 474 318 9 137 600 25 487 9.71e-53 195
Msa0120210 MtrunA17_Chr6g0481921 29.057 530 334 13 110 621 653 1158 6.52e-49 184
Msa0120210 MtrunA17_Chr6g0453051 30.920 511 318 14 111 601 91 586 1.76e-52 194
Msa0120210 MtrunA17_Chr6g0453051 28.660 485 334 9 122 600 746 1224 8.27e-49 184
Msa0120210 MtrunA17_Chr5g0410921 40.532 301 165 8 306 600 913 1205 2.57e-52 194
Msa0120210 MtrunA17_Chr5g0410921 44.298 228 120 4 376 600 349 572 4.02e-49 184
Msa0120210 MtrunA17_Chr3g0119381 28.632 475 301 10 145 600 160 615 2.69e-52 194
Msa0120210 MtrunA17_Chr3g0119381 36.164 365 207 11 275 619 938 1296 1.98e-47 179
Msa0120210 MtrunA17_Chr1g0193991 42.918 233 126 4 371 600 377 605 1.56e-51 192
Msa0120210 MtrunA17_Chr1g0193991 40.530 264 151 5 349 608 1009 1270 9.36e-47 177
Msa0120210 MtrunA17_Chr1g0194031 42.857 231 125 4 371 598 372 598 2.71e-51 190
Msa0120210 MtrunA17_Chr4g0069361 30.754 504 305 13 134 618 786 1264 5.57e-51 190
Msa0120210 MtrunA17_Chr4g0069361 43.277 238 121 5 372 600 362 594 8.76e-51 189
Msa0120210 MtrunA17_Chr1g0194001 41.667 264 148 5 349 608 112 373 6.46e-51 180
Msa0120210 MtrunA17_Chr4g0069401 28.661 478 312 11 137 600 127 589 6.45e-50 187
Msa0120210 MtrunA17_Chr4g0069401 30.099 505 307 14 134 618 784 1262 1.47e-48 183
Msa0120210 MtrunA17_Chr4g0069411 41.634 257 139 4 357 607 1023 1274 2.10e-49 186
Msa0120210 MtrunA17_Chr4g0069411 35.294 306 181 7 303 600 316 612 6.71e-46 175
Msa0120210 MtrunA17_Chr6g0486841 30.857 525 325 15 111 614 86 593 4.43e-49 184
Msa0120210 MtrunA17_Chr6g0486841 29.234 496 289 12 137 600 753 1218 2.94e-47 179
Msa0120210 MtrunA17_Chr6g0452081 43.836 219 112 4 376 591 20 230 6.29e-49 170
Msa0120210 MtrunA17_Chr3g0138211 42.194 237 125 5 372 600 380 612 1.17e-48 183
Msa0120210 MtrunA17_Chr3g0138211 28.431 510 309 13 134 608 776 1264 5.91e-47 178
Msa0120210 MtrunA17_Chr4g0039821 40.146 274 146 5 351 618 1001 1262 1.77e-48 182
Msa0120210 MtrunA17_Chr4g0039821 42.795 229 122 4 376 600 369 592 4.71e-47 178
Msa0120210 MtrunA17_Chr8g0344651 28.850 513 322 15 110 601 325 815 6.61e-47 178
Msa0120210 MtrunA17_Chr8g0344651 27.002 537 327 14 110 617 968 1468 4.96e-43 166
Msa0120210 MtrunA17_Chr8g0366481 38.000 300 174 6 306 600 310 602 1.36e-46 174
Msa0120210 MtrunA17_Chr3g0128381 38.372 258 145 6 352 600 362 614 4.15e-45 170
Msa0120210 MtrunA17_Chr3g0128391 26.542 535 324 8 129 600 3 531 7.57e-43 162
Msa0120210 MtrunA17_Chr7g0222781 34.114 299 188 5 306 601 330 622 5.16e-42 163
Msa0120210 MtrunA17_Chr7g0222781 26.667 525 347 14 108 616 879 1381 5.45e-36 145
Msa0120210 MtrunA17_Chr1g0212701 30.576 399 238 9 228 618 259 626 1.40e-41 162
Msa0120210 MtrunA17_Chr1g0212701 38.017 242 135 6 379 616 1143 1373 5.53e-36 145
Msa0120210 MtrunA17_Chr6g0463181 24.894 470 331 9 157 615 983 1441 4.13e-36 145
Msa0120210 MtrunA17_Chr6g0463181 30.837 227 138 5 383 607 609 818 1.12e-20 97.4
Msa0120210 MtrunA17_Chr1g0183191 25.285 526 347 14 95 601 1001 1499 8.76e-36 144
Msa0120210 MtrunA17_Chr1g0183191 30.769 221 127 5 400 618 661 857 6.85e-19 91.7
Msa0120210 MtrunA17_Chr6g0463141 33.784 222 144 2 379 600 1249 1467 3.41e-35 142
Msa0120210 MtrunA17_Chr6g0463141 23.517 489 281 16 160 596 397 844 1.31e-17 87.4
Msa0120210 MtrunA17_Chr6g0463121 32.489 237 157 2 379 615 1224 1457 5.40e-35 142
Msa0120210 MtrunA17_Chr6g0463121 30.802 237 141 6 363 598 607 821 1.26e-23 106
Msa0120210 MtrunA17_Chr6g0472531 33.755 237 154 2 379 615 1175 1408 6.53e-35 142
Msa0120210 MtrunA17_Chr6g0472531 30.415 217 133 4 383 598 573 772 1.43e-21 100
Msa0120210 MtrunA17_Chr7g0262191 33.484 221 144 1 381 601 1282 1499 2.82e-34 140
Msa0120210 MtrunA17_Chr7g0262191 31.222 221 126 5 400 618 657 853 3.71e-19 92.4
Msa0120210 MtrunA17_Chr5g0412941 32.599 227 150 2 381 607 83 306 6.54e-34 132
Msa0120210 MtrunA17_Chr8g0363771 31.278 227 153 1 381 607 1256 1479 6.54e-34 139
Msa0120210 MtrunA17_Chr8g0363771 24.629 337 210 12 297 618 543 850 2.26e-18 89.7
Msa0120210 MtrunA17_Chr8g0359291 24.043 470 335 9 157 615 181 639 7.67e-34 137
Msa0120210 MtrunA17_Chr2g0295921 31.718 227 152 1 381 607 1271 1494 8.23e-34 138
Msa0120210 MtrunA17_Chr2g0295921 25.692 253 160 7 368 618 641 867 2.57e-17 86.7
Msa0120210 MtrunA17_Chr6g0463151 32.068 237 158 2 379 615 1042 1275 1.76e-33 137
Msa0120210 MtrunA17_Chr6g0463151 28.910 211 132 4 387 596 444 637 2.45e-18 89.7
Msa0120210 MtrunA17_Chr6g0463201 33.182 220 143 2 381 600 1232 1447 1.78e-33 137
Msa0120210 MtrunA17_Chr6g0463201 29.956 227 140 5 383 607 627 836 3.51e-20 95.5
Msa0120210 MtrunA17_Chr6g0463131 32.609 230 150 3 379 606 1225 1451 2.20e-33 137
Msa0120210 MtrunA17_Chr6g0463131 30.137 219 135 5 383 600 623 824 2.45e-20 96.3
Msa0120210 MtrunA17_Chr2g0295901 32.035 231 153 2 381 610 1256 1483 2.38e-33 137
Msa0120210 MtrunA17_Chr2g0295901 25.373 335 210 11 299 618 546 855 5.07e-19 92.0
Msa0120210 MtrunA17_Chr2g0295911 31.718 227 152 1 381 607 1259 1482 4.22e-33 136
Msa0120210 MtrunA17_Chr2g0295911 26.852 216 134 4 404 618 663 855 6.01e-18 88.6
Msa0120210 MtrunA17_Chr5g0445741 24.314 547 337 16 96 607 968 1472 9.69e-33 135
Msa0120210 MtrunA17_Chr5g0445741 25.240 313 203 8 298 600 542 833 5.25e-19 92.0
Msa0120210 MtrunA17_Chr8g0341851 32.159 227 151 1 381 607 1218 1441 1.96e-32 134
Msa0120210 MtrunA17_Chr8g0341851 23.711 582 358 20 74 614 298 834 5.03e-26 114
Msa0120210 MtrunA17_Chr5g0445671 30.502 259 173 4 353 607 826 1081 2.82e-32 133
Msa0120210 MtrunA17_Chr5g0445671 25.240 313 203 8 298 600 151 442 7.05e-19 91.3
Msa0120210 MtrunA17_Chr5g0412721 30.952 252 167 4 353 600 1212 1460 5.67e-32 132
Msa0120210 MtrunA17_Chr5g0412721 25.545 321 199 9 298 600 524 822 3.83e-20 95.5
Msa0120210 MtrunA17_Chr8g0376961 32.018 228 150 3 381 607 1196 1419 5.95e-32 132
Msa0120210 MtrunA17_Chr8g0376961 25.000 312 204 8 302 603 503 794 6.36e-18 88.6
Msa0120210 MtrunA17_Chr3g0101471 30.279 251 169 4 353 600 1027 1274 7.45e-32 132
Msa0120210 MtrunA17_Chr3g0101471 26.126 333 212 9 294 618 338 644 1.90e-21 99.8
Msa0120210 MtrunA17_Chr2g0285731 34.842 221 141 1 380 600 1234 1451 1.32e-31 131
Msa0120210 MtrunA17_Chr2g0285731 31.707 205 118 4 400 600 633 819 6.15e-21 98.2
Msa0120210 MtrunA17_Chr6g0463391 31.818 220 146 2 381 600 412 627 2.83e-31 129
Msa0120210 MtrunA17_Chr1g0202221 30.631 222 151 1 379 600 1131 1349 2.93e-31 130
Msa0120210 MtrunA17_Chr1g0202221 23.489 579 382 17 58 612 294 835 6.69e-21 97.8
Msa0120210 MtrunA17_Chr3g0101441 31.364 220 148 2 381 600 1060 1276 4.72e-31 129
Msa0120210 MtrunA17_Chr3g0101441 25.526 333 214 9 294 618 340 646 4.99e-20 95.1
Msa0120210 MtrunA17_Chr8g0337121 30.085 236 162 1 380 615 1256 1488 6.23e-31 129
Msa0120210 MtrunA17_Chr8g0337121 24.425 348 220 12 263 600 516 830 6.13e-18 88.6
Msa0120210 MtrunA17_Chr3g0101461 32.273 220 146 2 381 600 1060 1276 6.51e-31 129
Msa0120210 MtrunA17_Chr3g0101461 25.298 336 211 10 294 618 340 646 4.50e-20 95.1
Msa0120210 MtrunA17_Chr6g0463211 31.364 220 147 2 381 600 1298 1513 6.86e-31 129
Msa0120210 MtrunA17_Chr6g0463211 25.484 310 186 8 312 600 576 861 1.44e-20 97.1
Msa0120210 MtrunA17_Chr8g0337191 30.085 236 162 1 380 615 1236 1468 8.46e-31 129
Msa0120210 MtrunA17_Chr8g0337191 25.652 230 150 6 372 600 601 810 7.24e-16 82.0
Msa0120210 MtrunA17_Chr5g0445701 32.836 201 132 1 391 591 4 201 1.03e-30 120
Msa0120210 MtrunA17_Chr8g0353541 29.119 261 173 3 353 607 795 1049 1.59e-30 128
Msa0120210 MtrunA17_Chr8g0353541 28.636 220 133 4 400 618 226 422 1.42e-18 90.5
Msa0120210 MtrunA17_Chr3g0085281 31.674 221 146 4 381 600 1219 1435 1.87e-30 128
Msa0120210 MtrunA17_Chr3g0085281 25.163 306 207 7 302 600 507 797 2.00e-17 87.0
Msa0120210 MtrunA17_Chr8g0341751 30.837 227 154 1 381 607 1042 1265 6.60e-30 126
Msa0120210 MtrunA17_Chr8g0341751 29.412 221 130 5 400 618 442 638 5.24e-20 95.1
Msa0120210 MtrunA17_Chr6g0471281 31.579 266 176 4 353 615 1196 1458 1.25e-29 125
Msa0120210 MtrunA17_Chr6g0471281 31.163 215 130 4 383 596 623 820 4.17e-19 92.4
Msa0120210 MtrunA17_Chr3g0080981 24.638 552 378 14 73 600 911 1448 1.40e-29 125
Msa0120210 MtrunA17_Chr3g0080981 22.328 421 285 12 208 618 443 831 3.55e-18 89.4
Msa0120210 MtrunA17_Chr8g0353781 30.396 227 155 1 381 607 1209 1432 1.95e-29 124
Msa0120210 MtrunA17_Chr8g0353781 23.757 362 234 11 265 618 486 813 7.45e-21 97.8
Msa0120210 MtrunA17_Chr3g0101481 31.897 232 145 4 381 607 1253 1476 3.93e-29 124
Msa0120210 MtrunA17_Chr3g0101481 25.382 327 201 9 303 618 544 838 5.83e-19 91.7
Msa0120210 MtrunA17_Chr8g0341761 30.396 227 155 1 381 607 1203 1426 7.01e-29 123
Msa0120210 MtrunA17_Chr8g0341761 26.923 234 146 5 387 618 600 810 1.29e-19 94.0
Msa0120210 MtrunA17_Chr2g0333911 31.513 238 152 3 381 618 772 998 1.23e-28 122
Msa0120210 MtrunA17_Chr2g0333911 26.667 240 156 7 369 605 147 369 4.04e-14 75.9
Msa0120210 MtrunA17_Chr3g0080941 23.770 488 341 9 129 600 977 1449 2.69e-28 121
Msa0120210 MtrunA17_Chr3g0080941 23.192 401 277 7 208 600 443 820 2.00e-19 93.2
Msa0120210 MtrunA17_Chr8g0341811 30.415 217 148 1 391 607 1040 1253 1.98e-27 118
Msa0120210 MtrunA17_Chr8g0341811 28.634 227 138 4 393 618 448 651 2.34e-21 99.4
Msa0120210 MtrunA17_Chr1g0195691 32.018 228 150 3 381 607 1271 1494 2.63e-27 118
Msa0120210 MtrunA17_Chr1g0195691 24.186 430 267 14 208 618 475 864 3.00e-22 102
Msa0120210 MtrunA17_Chr8g0393151 33.184 223 135 4 391 608 27 240 1.90e-26 108
Msa0120210 MtrunA17_Chr8g0341801 29.545 220 152 1 381 600 185 401 1.67e-24 106
Msa0120210 MtrunA17_Chr6g0484351 30.455 220 150 1 381 600 410 626 2.92e-24 107
Msa0120210 MtrunA17_Chr8g0366471 43.860 114 64 0 504 617 7 120 3.96e-22 93.2
Msa0120210 MtrunA17_Chr6g0452051 36.994 173 99 5 349 516 247 414 1.77e-21 97.4
Msa0120210 MtrunA17_Chr1g0176451 34.632 231 127 10 383 596 1 224 1.45e-20 95.9
Msa0120210 MtrunA17_Chr5g0408061 35.398 226 126 10 383 596 47 264 2.57e-19 92.0
Msa0120210 MtrunA17_Chr8g0366451 36.552 145 83 4 376 516 308 447 2.75e-19 90.9
Msa0120210 MtrunA17_Chr8g0384391 31.905 210 128 8 395 596 52 254 1.92e-18 89.4
Msa0120210 MtrunA17_Chr6g0484361 30.435 184 111 3 400 582 622 789 2.21e-18 89.4
Msa0120210 MtrunA17_Chr7g0267971 33.333 234 129 11 383 598 138 362 2.30e-18 89.4
Msa0120210 MtrunA17_Chr6g0463401 25.000 424 250 15 160 557 406 787 3.54e-18 89.0
Msa0120210 MtrunA17_Chr5g0412921 29.502 261 148 9 364 618 594 824 3.63e-18 89.0
Msa0120210 MtrunA17_Chr1g0176441 31.600 250 144 11 383 614 149 389 5.18e-18 88.2
Msa0120210 MtrunA17_Chr1g0198931 34.112 214 113 10 399 596 107 308 6.71e-18 87.8
Msa0120210 MtrunA17_Chr3g0130331 30.698 215 139 6 391 598 50 261 3.37e-17 85.5
Msa0120210 MtrunA17_Chr2g0316301 32.759 232 133 10 395 610 69 293 4.63e-17 85.1
Msa0120210 MtrunA17_Chr8g0359931 33.333 225 109 8 383 580 37 247 1.38e-16 83.6
Msa0120210 MtrunA17_Chr3g0130211 30.392 204 121 5 398 598 54 239 1.43e-16 80.1
Msa0120210 MtrunA17_Chr4g0039261 32.367 207 127 6 399 597 51 252 6.23e-16 81.6
Msa0120210 MtrunA17_Chr1g0202431 31.019 216 130 8 390 596 39 244 8.99e-16 80.9
Msa0120210 MtrunA17_Chr1g0199471 31.278 227 140 9 382 598 500 720 9.70e-16 81.3
Msa0120210 MtrunA17_Chr7g0257341 31.455 213 136 6 400 610 573 777 2.53e-15 80.1
Msa0120210 MtrunA17_Chr4g0050261 28.571 245 149 7 369 597 43 277 7.74e-15 78.2
Msa0120210 MtrunA17_Chr8g0341791 28.662 157 101 3 463 618 19 165 1.76e-14 75.5
Msa0120210 MtrunA17_Chr8g0349441 29.189 185 102 4 382 557 36 200 1.84e-14 72.8
Msa0120210 MtrunA17_Chr7g0249091 28.632 234 123 8 395 598 96 315 2.15e-14 75.1
Msa0120210 MtrunA17_Chr4g0039251 29.858 211 127 6 399 597 93 294 2.38e-14 76.6
Msa0120210 MtrunA17_Chr2g0318061 31.579 209 127 8 399 598 31 232 2.64e-14 75.1
Msa0120210 MtrunA17_Chr4g0050251 28.571 245 149 8 369 597 43 277 6.19e-14 75.1
Msa0120210 MtrunA17_Chr3g0129301 30.256 195 109 7 387 579 437 606 8.08e-14 74.7
Msa0120210 MtrunA17_Chr2g0285231 45.333 75 41 0 533 607 25 99 1.16e-13 67.4
Msa0120210 MtrunA17_Chr4g0065231 29.104 268 136 11 375 614 48 289 1.98e-13 73.6
Msa0120210 MtrunA17_Chr3g0102731 30.137 219 125 9 393 596 92 297 4.15e-13 72.4
Msa0120210 MtrunA17_Chr8g0371961 42.169 83 48 0 391 473 10 92 4.22e-13 66.2
Msa0120210 MtrunA17_Chr5g0446901 31.797 217 128 10 393 596 103 312 5.53e-13 72.0
Msa0120210 MtrunA17_Chr3g0132711 26.047 215 145 6 398 607 208 413 2.50e-12 70.1
Msa0120210 MtrunA17_Chr3g0093041 24.510 204 144 5 398 598 194 390 6.53e-12 68.6
Msa0120210 MtrunA17_Chr6g0477811 30.556 216 131 8 393 597 60 267 1.04e-11 68.2
Msa0120210 MtrunA17_Chr3g0093091 22.059 272 195 7 351 610 578 844 1.33e-11 67.8
Msa0120210 MtrunA17_Chr7g0262321 31.053 190 118 7 398 580 567 750 1.56e-11 67.8
Msa0120210 MtrunA17_Chr1g0213091 27.638 199 107 7 399 578 122 302 2.87e-11 66.6
Msa0120210 MtrunA17_Chr4g0060501 23.832 214 153 5 390 599 621 828 3.63e-11 66.6
Msa0120210 MtrunA17_Chr4g0060431 23.077 221 160 5 394 610 610 824 3.85e-11 66.2
Msa0120210 MtrunA17_Chr8g0389101 27.542 236 140 9 383 598 37 261 8.37e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120210 AT5G03910.1 57.303 623 245 4 8 621 24 634 0.0 719
Msa0120210 AT3G28345.1 30.805 646 379 16 15 618 605 1224 4.46e-66 235
Msa0120210 AT3G28345.1 41.667 252 140 3 369 617 345 592 2.32e-49 186
Msa0120210 AT3G28415.2 32.630 521 325 10 108 618 709 1213 4.44e-63 226
Msa0120210 AT3G28415.2 38.235 272 156 5 350 617 316 579 1.31e-45 174
Msa0120210 AT3G28415.1 32.630 521 325 10 108 618 701 1205 4.95e-63 226
Msa0120210 AT3G28415.1 38.235 272 156 5 350 617 308 571 1.28e-45 174
Msa0120210 AT5G39040.1 31.467 518 310 9 117 616 132 622 2.22e-61 216
Msa0120210 AT3G28390.1 31.835 534 309 12 110 618 706 1209 4.02e-60 218
Msa0120210 AT3G28390.1 41.700 247 127 5 366 600 322 563 2.36e-45 174
Msa0120210 AT3G28380.1 30.401 648 379 19 15 618 605 1224 5.59e-60 217
Msa0120210 AT3G28380.1 40.234 256 138 5 370 616 346 595 1.45e-45 174
Msa0120210 AT1G70610.2 32.311 489 299 15 129 601 22 494 7.13e-60 209
Msa0120210 AT1G70610.1 32.238 487 302 13 129 601 203 675 1.18e-58 209
Msa0120210 AT3G28360.1 31.621 506 293 12 137 618 734 1210 1.91e-58 213
Msa0120210 AT3G28360.1 40.234 256 139 5 355 600 311 562 1.52e-44 171
Msa0120210 AT1G28010.1 29.541 501 330 11 111 600 100 588 5.29e-57 209
Msa0120210 AT1G28010.1 29.857 489 293 13 137 600 759 1222 4.02e-51 191
Msa0120210 AT5G58270.1 31.261 563 346 17 66 607 159 701 8.64e-57 204
Msa0120210 AT4G28630.1 33.562 438 261 13 179 600 228 651 9.47e-55 198
Msa0120210 AT4G25450.3 29.567 531 305 12 126 601 4 520 1.69e-54 194
Msa0120210 AT1G27940.1 28.343 501 336 11 111 600 99 587 1.97e-54 201
Msa0120210 AT1G27940.1 30.181 497 281 12 137 600 757 1220 4.68e-53 197
Msa0120210 AT1G27940.2 42.857 231 126 2 372 600 147 373 5.39e-54 199
Msa0120210 AT1G27940.2 30.181 497 281 12 137 600 543 1006 3.92e-53 197
Msa0120210 AT4G25450.1 29.630 540 311 13 117 601 164 689 1.39e-53 195
Msa0120210 AT1G10680.1 32.347 507 291 16 137 616 737 1218 1.96e-53 198
Msa0120210 AT1G10680.1 42.063 252 132 5 369 617 347 587 1.38e-50 189
Msa0120210 AT2G36910.1 43.825 251 125 5 373 619 358 596 2.16e-53 198
Msa0120210 AT2G36910.1 37.956 274 156 7 349 614 988 1255 2.36e-49 186
Msa0120210 AT4G28620.1 29.783 554 346 15 66 600 124 653 3.93e-53 193
Msa0120210 AT2G47000.3 43.644 236 124 4 376 607 377 607 2.75e-52 194
Msa0120210 AT2G47000.7 43.644 236 124 4 376 607 377 607 2.75e-52 194
Msa0120210 AT4G25960.1 30.845 509 308 15 113 600 761 1246 3.22e-52 194
Msa0120210 AT4G25960.1 44.082 245 130 4 376 617 394 634 1.38e-50 189
Msa0120210 AT2G47000.4 43.644 236 124 4 376 607 377 607 3.26e-52 194
Msa0120210 AT3G28860.1 29.615 493 319 11 122 600 748 1226 3.90e-52 194
Msa0120210 AT3G28860.1 30.616 503 322 12 111 600 93 581 9.35e-51 190
Msa0120210 AT2G47000.2 43.644 236 124 4 376 607 377 607 4.01e-52 194
Msa0120210 AT2G47000.2 27.551 392 242 14 111 480 769 1140 1.64e-20 97.1
Msa0120210 AT2G47000.6 43.644 236 124 4 376 607 377 607 4.92e-52 194
Msa0120210 AT2G47000.6 31.670 521 312 16 111 608 769 1268 6.88e-52 193
Msa0120210 AT2G47000.5 43.644 236 124 4 376 607 377 607 4.92e-52 194
Msa0120210 AT2G47000.5 31.670 521 312 16 111 608 769 1268 6.88e-52 193
Msa0120210 AT2G47000.1 43.644 236 124 4 376 607 377 607 4.92e-52 194
Msa0120210 AT2G47000.1 31.670 521 312 16 111 608 769 1268 6.88e-52 193
Msa0120210 AT1G02520.1 43.333 240 124 5 370 600 361 597 7.06e-51 190
Msa0120210 AT1G02520.1 29.842 506 326 11 111 600 759 1251 3.74e-48 182
Msa0120210 AT1G02520.2 43.333 240 124 5 370 600 361 597 7.06e-51 190
Msa0120210 AT1G02520.2 29.842 506 326 11 111 600 759 1251 3.74e-48 182
Msa0120210 AT1G02520.3 43.333 240 124 5 370 600 361 597 7.06e-51 190
Msa0120210 AT1G02520.3 29.842 506 326 11 111 600 759 1251 3.74e-48 182
Msa0120210 AT1G10680.2 42.063 252 132 5 369 617 347 587 1.06e-50 190
Msa0120210 AT1G10680.2 32.151 451 258 15 137 564 737 1162 3.93e-43 167
Msa0120210 AT3G62150.3 42.731 227 125 3 376 600 396 619 1.97e-50 189
Msa0120210 AT3G62150.3 31.558 507 311 14 121 608 789 1278 1.32e-49 186
Msa0120210 AT3G62150.2 42.731 227 125 3 376 600 396 619 1.97e-50 189
Msa0120210 AT3G62150.2 31.558 507 311 14 121 608 789 1278 1.32e-49 186
Msa0120210 AT3G62150.1 42.731 227 125 3 376 600 396 619 1.97e-50 189
Msa0120210 AT3G62150.1 31.558 507 311 14 121 608 789 1278 1.32e-49 186
Msa0120210 AT4G18050.2 44.167 240 120 5 370 600 347 581 3.13e-50 188
Msa0120210 AT4G18050.2 43.983 241 125 3 372 607 992 1227 2.15e-48 183
Msa0120210 AT4G18050.1 44.167 240 120 5 370 600 337 571 3.23e-50 188
Msa0120210 AT4G18050.1 43.983 241 125 3 372 607 982 1217 2.20e-48 183
Msa0120210 AT4G01830.2 29.719 498 307 13 134 608 501 978 7.02e-50 187
Msa0120210 AT4G01830.2 42.017 238 132 4 376 610 112 346 1.72e-48 183
Msa0120210 AT4G01830.1 29.719 498 307 13 134 608 735 1212 7.67e-50 187
Msa0120210 AT4G01830.1 42.017 238 132 4 376 610 346 580 1.50e-48 183
Msa0120210 AT5G46540.1 30.476 525 310 14 111 607 732 1229 9.87e-50 187
Msa0120210 AT5G46540.1 29.512 471 301 13 145 600 119 573 6.37e-49 184
Msa0120210 AT4G01820.1 29.492 512 319 12 120 608 719 1211 3.30e-49 185
Msa0120210 AT4G01820.1 42.000 250 134 5 370 610 328 575 3.35e-48 182
Msa0120210 AT1G02530.2 41.667 240 128 5 370 600 348 584 1.50e-48 183
Msa0120210 AT4G01820.2 42.000 250 134 5 370 610 328 575 2.10e-48 182
Msa0120210 AT1G02530.1 41.667 240 128 5 370 600 348 584 2.91e-48 182
Msa0120210 AT1G02530.1 40.476 252 145 4 353 600 996 1246 3.10e-46 176
Msa0120210 AT3G55320.1 36.630 273 157 6 349 618 381 640 1.14e-41 162
Msa0120210 AT3G55320.1 26.430 507 336 15 113 600 888 1376 3.78e-35 143
Msa0120210 AT2G39480.2 35.000 280 166 6 344 620 194 460 5.34e-41 160
Msa0120210 AT2G39480.2 38.938 226 130 5 379 600 974 1195 2.79e-36 146
Msa0120210 AT2G39480.1 35.636 275 161 6 349 620 379 640 5.50e-41 160
Msa0120210 AT2G39480.1 38.938 226 130 5 379 600 1154 1375 2.79e-36 146
Msa0120210 AT2G34660.3 26.265 514 332 12 110 601 682 1170 1.12e-32 135
Msa0120210 AT2G34660.3 24.895 478 319 14 135 600 82 531 7.61e-24 107
Msa0120210 AT2G34660.1 26.265 514 332 12 110 601 969 1457 1.13e-32 135
Msa0120210 AT2G34660.1 24.895 478 319 14 135 600 369 818 4.95e-24 108
Msa0120210 AT2G34660.2 26.265 514 332 12 110 601 969 1457 1.13e-32 135
Msa0120210 AT2G34660.2 24.895 478 319 14 135 600 369 818 4.95e-24 108
Msa0120210 AT1G04120.1 30.078 256 165 4 353 601 1235 1483 1.21e-32 135
Msa0120210 AT1G04120.1 31.364 220 127 4 400 618 640 836 8.90e-21 98.2
Msa0120210 AT1G04120.3 30.078 256 165 4 353 601 1200 1448 1.27e-32 135
Msa0120210 AT1G04120.3 31.364 220 127 4 400 618 605 801 8.91e-21 98.2
Msa0120210 AT3G60160.3 30.508 236 161 2 381 616 1217 1449 1.73e-32 134
Msa0120210 AT3G60160.3 32.544 169 96 5 463 616 662 827 5.10e-14 76.3
Msa0120210 AT3G60160.1 30.508 236 161 2 381 616 1253 1485 1.85e-32 134
Msa0120210 AT3G60160.1 32.544 169 96 5 463 616 698 863 4.83e-14 76.3
Msa0120210 AT3G59140.1 31.224 237 160 2 379 615 1203 1436 3.31e-32 134
Msa0120210 AT3G59140.1 30.198 202 124 3 400 600 620 805 7.57e-21 98.2
Msa0120210 AT3G60970.1 28.464 267 185 3 353 616 769 1032 5.26e-32 133
Msa0120210 AT3G60970.1 30.622 209 122 5 400 601 232 424 4.52e-18 89.4
Msa0120210 AT1G30400.2 26.095 525 339 13 110 610 964 1463 5.84e-32 133
Msa0120210 AT1G30400.2 24.632 475 324 12 135 600 369 818 5.23e-23 105
Msa0120210 AT1G30400.1 26.095 525 339 13 110 610 964 1463 5.84e-32 133
Msa0120210 AT1G30400.1 24.632 475 324 12 135 600 369 818 5.23e-23 105
Msa0120210 AT3G13100.1 32.727 220 145 2 381 600 1239 1455 1.32e-31 132
Msa0120210 AT3G13100.1 30.573 157 98 3 463 618 692 838 9.18e-14 75.5
Msa0120210 AT3G13100.2 32.727 220 145 2 381 600 994 1210 1.64e-31 131
Msa0120210 AT3G13100.2 30.573 157 98 3 463 618 447 593 1.16e-13 75.1
Msa0120210 AT3G62700.1 32.727 220 145 1 381 600 1295 1511 4.81e-31 130
Msa0120210 AT3G62700.1 27.425 299 186 9 326 618 580 853 6.48e-22 101
Msa0120210 AT1G04120.2 30.000 260 155 6 353 601 1235 1478 1.45e-30 129
Msa0120210 AT1G04120.2 31.364 220 127 4 400 618 640 836 7.95e-21 98.2
Msa0120210 AT1G30420.1 24.400 500 343 9 119 600 967 1449 2.69e-30 128
Msa0120210 AT1G30420.1 23.516 455 303 14 160 600 396 819 8.73e-17 85.1
Msa0120210 AT1G30410.2 24.299 535 359 11 91 600 936 1449 2.79e-30 127
Msa0120210 AT1G30410.2 30.097 206 120 5 400 600 633 819 2.04e-15 80.9
Msa0120210 AT1G30410.6 24.299 535 359 11 91 600 936 1449 2.79e-30 127
Msa0120210 AT1G30410.6 30.097 206 120 5 400 600 633 819 2.04e-15 80.9
Msa0120210 AT1G30410.4 24.299 535 359 11 91 600 936 1449 2.79e-30 127
Msa0120210 AT1G30410.4 30.097 206 120 5 400 600 633 819 2.04e-15 80.9
Msa0120210 AT1G30410.1 24.299 535 359 11 91 600 939 1452 3.03e-30 127
Msa0120210 AT1G30410.1 30.097 206 120 5 400 600 636 822 2.19e-15 80.9
Msa0120210 AT1G30410.5 24.254 536 360 11 90 600 820 1334 3.36e-30 127
Msa0120210 AT1G30410.5 30.097 206 120 5 400 600 518 704 2.79e-15 80.5
Msa0120210 AT3G13090.1 30.909 220 149 2 381 600 1217 1433 8.18e-30 126
Msa0120210 AT3G13090.1 29.907 214 132 5 389 600 607 804 5.51e-14 76.3
Msa0120210 AT3G13080.1 30.909 220 149 2 381 600 1267 1483 1.10e-29 126
Msa0120210 AT3G13080.1 28.182 220 134 4 400 618 658 854 1.23e-12 72.0
Msa0120210 AT2G47800.1 31.674 221 148 1 381 601 1272 1489 7.10e-29 123
Msa0120210 AT2G47800.1 29.915 234 139 5 387 618 645 855 1.03e-20 97.8
Msa0120210 AT3G13080.5 30.455 220 150 2 381 600 1267 1483 1.49e-28 122
Msa0120210 AT3G13080.5 28.182 220 134 4 400 618 658 854 1.19e-12 72.0
Msa0120210 AT3G21250.5 29.545 220 152 1 381 600 1208 1424 4.56e-28 120
Msa0120210 AT3G21250.5 24.534 322 211 10 302 614 523 821 2.48e-19 93.6
Msa0120210 AT3G21250.1 29.545 220 152 1 381 600 1202 1418 4.67e-28 120
Msa0120210 AT3G21250.1 24.534 322 211 10 302 614 517 815 2.37e-19 93.6
Msa0120210 AT3G21250.2 29.545 220 152 1 381 600 1213 1429 4.77e-28 120
Msa0120210 AT3G21250.2 23.780 328 217 9 302 614 517 826 8.00e-21 98.2
Msa0120210 AT3G21250.4 29.545 220 152 1 381 600 1219 1435 4.78e-28 120
Msa0120210 AT3G21250.4 23.780 328 217 9 302 614 523 832 7.34e-21 98.2
Msa0120210 AT3G21250.6 29.545 220 152 1 381 600 797 1013 8.08e-28 120
Msa0120210 AT3G21250.6 23.780 328 217 9 302 614 101 410 9.23e-21 97.8
Msa0120210 AT3G21250.3 29.545 220 152 1 381 600 797 1013 8.08e-28 120
Msa0120210 AT3G21250.3 23.780 328 217 9 302 614 101 410 9.23e-21 97.8
Msa0120210 AT4G25450.2 25.214 468 281 13 117 529 164 617 1.68e-27 118
Msa0120210 AT1G67940.1 31.897 232 140 6 383 608 29 248 3.19e-26 108
Msa0120210 AT2G07680.6 27.957 279 186 3 323 600 1040 1304 7.26e-26 114
Msa0120210 AT2G07680.6 28.862 246 145 6 373 604 469 698 2.25e-18 90.1
Msa0120210 AT2G07680.4 27.957 279 186 3 323 600 1114 1378 7.92e-26 114
Msa0120210 AT2G07680.4 28.862 246 145 6 373 604 543 772 2.34e-18 90.1
Msa0120210 AT2G07680.1 27.957 279 186 3 323 600 1117 1381 8.14e-26 114
Msa0120210 AT2G07680.1 28.862 246 145 6 373 604 546 775 2.24e-18 90.5
Msa0120210 AT2G07680.5 27.957 279 186 3 323 600 1123 1387 8.82e-26 114
Msa0120210 AT2G07680.5 28.862 246 145 6 373 604 552 781 2.28e-18 90.5
Msa0120210 AT2G07680.3 27.957 279 186 3 323 600 1139 1403 9.68e-26 113
Msa0120210 AT2G07680.3 28.862 246 145 6 373 604 568 797 2.41e-18 90.1
Msa0120210 AT5G39040.2 25.916 382 246 7 117 480 132 494 5.05e-24 106
Msa0120210 AT3G13080.2 27.273 220 132 2 381 600 1267 1458 1.06e-22 103
Msa0120210 AT3G13080.2 28.182 220 134 4 400 618 658 854 1.23e-12 72.0
Msa0120210 AT2G07680.2 28.862 246 145 6 373 604 568 797 1.77e-18 90.5
Msa0120210 AT1G31770.1 33.810 210 117 8 399 596 81 280 2.96e-18 89.4
Msa0120210 AT2G13610.1 28.509 228 145 7 393 614 56 271 2.93e-17 86.3
Msa0120210 AT4G33460.1 29.469 207 119 6 399 598 59 245 3.63e-17 82.4
Msa0120210 AT1G30420.2 23.516 455 303 15 160 600 396 819 8.54e-17 85.1
Msa0120210 AT3G13220.1 34.101 217 117 11 394 596 101 305 1.74e-16 83.6
Msa0120210 AT4G25750.1 31.441 229 139 7 399 621 30 246 4.93e-16 82.0
Msa0120210 AT3G25620.1 32.683 205 110 9 407 596 107 298 6.84e-16 81.3
Msa0120210 AT1G30410.3 30.097 206 120 5 400 600 633 819 1.76e-15 80.9
Msa0120210 AT1G30410.3 22.738 409 273 10 91 474 936 1326 3.45e-15 80.1
Msa0120210 AT1G51500.1 30.986 213 125 7 398 597 43 246 1.80e-15 80.5
Msa0120210 AT5G19410.1 34.000 200 103 9 399 580 66 254 2.30e-15 80.1
Msa0120210 AT5G19410.2 34.000 200 103 9 399 580 75 263 2.48e-15 80.1
Msa0120210 AT1G51460.1 32.432 185 115 4 399 578 30 209 5.04e-15 79.0
Msa0120210 AT5G06530.3 31.950 241 133 10 383 600 157 389 5.12e-15 79.0
Msa0120210 AT5G06530.2 31.092 238 139 8 383 600 157 389 5.95e-15 79.0
Msa0120210 AT5G06530.1 31.092 238 139 8 383 600 157 389 5.95e-15 79.0
Msa0120210 AT1G71960.1 31.925 213 121 10 399 597 83 285 9.39e-15 78.2
Msa0120210 AT5G52860.1 28.632 234 120 8 399 614 44 248 1.74e-14 77.0
Msa0120210 AT5G09930.1 31.053 190 108 5 390 579 418 584 3.09e-14 76.6
Msa0120210 AT3G60160.2 32.544 169 96 6 463 616 698 863 3.38e-14 77.0
Msa0120210 AT3G60160.2 36.170 94 60 0 381 474 1253 1346 4.41e-14 76.6
Msa0120210 AT3G21090.1 30.594 219 130 8 392 597 37 246 5.06e-14 75.9
Msa0120210 AT4G27420.1 32.367 207 127 7 399 596 66 268 1.74e-13 73.9
Msa0120210 AT3G55130.1 29.730 222 133 10 390 597 90 302 1.78e-13 74.3
Msa0120210 AT1G65410.1 28.870 239 116 10 395 598 95 314 3.15e-13 72.0
Msa0120210 AT2G41700.2 29.493 217 135 6 400 610 498 702 3.22e-13 73.9
Msa0120210 AT2G41700.1 29.493 217 135 6 400 610 568 772 3.46e-13 73.6
Msa0120210 AT2G37360.1 30.000 200 101 8 399 578 133 313 4.01e-13 73.2
Msa0120210 AT5G61700.1 24.444 270 184 9 352 607 556 819 4.98e-13 72.8
Msa0120210 AT3G55110.1 28.326 233 128 9 387 597 79 294 7.23e-13 72.0
Msa0120210 AT3G13080.3 28.182 220 134 4 400 618 658 854 9.03e-13 72.0
Msa0120210 AT3G13080.4 28.182 220 134 4 400 618 658 854 9.03e-13 72.0
Msa0120210 AT1G71330.1 32.174 115 77 1 487 600 1 115 9.13e-13 70.1
Msa0120210 AT1G53270.1 30.288 208 128 8 399 596 50 250 1.02e-12 71.6
Msa0120210 AT3G47730.1 24.510 204 144 5 398 598 545 741 1.06e-12 72.0
Msa0120210 AT5G61740.2 24.498 249 175 8 369 610 538 780 1.31e-12 71.6
Msa0120210 AT5G61740.1 24.498 249 175 8 369 610 572 814 1.44e-12 71.2
Msa0120210 AT5G61740.3 24.498 249 175 8 369 610 433 675 1.44e-12 71.2
Msa0120210 AT1G17840.1 29.187 209 133 6 398 597 68 270 2.14e-12 70.9
Msa0120210 AT3G55100.1 27.149 221 123 8 399 598 51 254 5.96e-12 69.3
Msa0120210 AT3G55100.2 27.149 221 123 8 399 598 51 254 5.96e-12 69.3
Msa0120210 AT5G61690.2 24.510 204 144 5 398 598 546 742 6.09e-12 69.3
Msa0120210 AT2G39350.1 27.468 233 123 9 399 603 109 323 7.67e-12 68.9
Msa0120210 AT3G47780.1 24.091 220 159 4 394 610 626 840 7.82e-12 68.9
Msa0120210 AT3G55090.1 27.477 222 117 9 399 596 107 308 1.04e-11 68.6
Msa0120210 AT4G15233.3 30.189 212 126 10 398 596 756 958 3.17e-11 67.4
Msa0120210 AT4G15233.6 30.189 212 126 10 398 596 756 958 3.17e-11 67.4
Msa0120210 AT4G15233.7 30.189 212 126 10 398 596 800 1002 3.89e-11 67.0
Msa0120210 AT4G15233.2 30.189 212 126 10 398 596 818 1020 3.90e-11 67.0
Msa0120210 AT4G15233.8 30.189 212 126 10 398 596 809 1011 4.04e-11 67.0
Msa0120210 AT4G15233.1 30.189 212 126 10 398 596 818 1020 4.08e-11 67.0
Msa0120210 AT3G53510.1 28.000 200 105 7 399 578 126 306 7.16e-11 65.9
Msa0120210 AT1G53390.1 27.670 206 137 7 382 580 506 706 8.30e-11 65.9

Find 161 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTCAGGCTATTTATTT+TGG 0.133141 1_3:+44856887 Msa0120210:CDS
TTGGATGGAGGTTTGGGTTT+GGG 0.179277 1_3:-44854937 None:intergenic
GTTCTAGTTGTTACCTTTCT+TGG 0.179934 1_3:+44856542 Msa0120210:CDS
AAATTCTTCTATATTGATTC+TGG 0.200160 1_3:+44859069 Msa0120210:CDS
AAGTAAATTTCTCACTTAAA+AGG 0.230858 1_3:+44859859 Msa0120210:three_prime_UTR
ATTGGATTGGATGGAGGTTT+GGG 0.237359 1_3:-44854943 None:intergenic
AGGAGACATCACAGAATTTC+AGG 0.237554 1_3:-44857654 None:intergenic
TTTCTTAATTGAGCCTATTC+AGG 0.241314 1_3:+44857000 Msa0120210:CDS
ATGCACAACACGCGCTTCTT+TGG 0.244308 1_3:+44855251 Msa0120210:CDS
CATGAAGGTTCAAACCATTT+AGG 0.249997 1_3:-44857705 None:intergenic
TGAAAATTTACCTTTGCTTC+TGG 0.253834 1_3:-44858803 None:intergenic
AATTGGATTGGATGGAGGTT+TGG 0.261226 1_3:-44854944 None:intergenic
TGGAGGTTTGGGTTTGGGTT+TGG 0.264834 1_3:-44854932 None:intergenic
TTGCTGAAAGCATTGGTTAT+AGG 0.282402 1_3:+44858646 Msa0120210:CDS
ATTGGATGGAGGTTTGGGTT+TGG 0.286775 1_3:-44854938 None:intergenic
ACAAGCTGTGGAGCGTTTAA+TGG 0.290445 1_3:+44859138 Msa0120210:CDS
GGTGGTGACGGCGGAGAATT+TGG 0.290613 1_3:-44855155 None:intergenic
GTTGATTTGGACTATGTTAC+AGG 0.292806 1_3:+44857628 Msa0120210:CDS
GTTGCTATTGTTGGCCCGTC+TGG 0.296691 1_3:+44857745 Msa0120210:CDS
CACCGAACCTGCGCAAAGTA+TGG 0.300639 1_3:-44856918 None:intergenic
CATTATGTTTCTTGAGGAAA+TGG 0.300997 1_3:-44854873 None:intergenic
CGAGAGAAATCTCGCGAAAA+AGG 0.301406 1_3:-44854808 None:intergenic
TGCTGAAAGCATTGGTTATA+GGG 0.302928 1_3:+44858647 Msa0120210:CDS
GGCCTACCTCATATCCTAAA+TGG 0.306234 1_3:+44857691 Msa0120210:CDS
ATATTGGTATTGTATCCTTC+TGG 0.318377 1_3:-44858750 None:intergenic
TTCGGAATTTGGTTTGGAAT+TGG 0.321532 1_3:-44854961 None:intergenic
AGAATATTCCTCTTGGATAA+TGG 0.328281 1_3:+44859483 Msa0120210:CDS
GAAGGATACAATACCAATAT+TGG 0.336333 1_3:+44858753 Msa0120210:CDS
GAAACCAGATGCTGTTGATT+TGG 0.337327 1_3:+44857615 Msa0120210:CDS
TTGGATTGTGTTGTTGTTGT+TGG 0.337896 1_3:-44855038 None:intergenic
TAGGCCATCATTGTACTTAA+AGG 0.342548 1_3:-44857674 None:intergenic
ATGGTTTGAACCTTCATGTT+AGG 0.344582 1_3:+44857710 Msa0120210:CDS
CACTTGCAAAACTGTTGCTT+CGG 0.347951 1_3:+44857782 Msa0120210:CDS
TGAGCCTCTTGGTCCAATAT+TGG 0.353043 1_3:-44858766 None:intergenic
CGGCTTTATGACCCTATATC+TGG 0.354734 1_3:+44857802 Msa0120210:CDS
AACTCTGCAAACGAATGTTC+TGG 0.355588 1_3:-44858023 None:intergenic
AGTAATTCCCCAGGTTATTC+AGG 0.357510 1_3:+44856874 Msa0120210:CDS
CATGATAACAATACCTGAAT+AGG 0.358481 1_3:-44857013 None:intergenic
ATTGCAGGTTATTCCTTGTA+TGG 0.365623 1_3:+44856520 Msa0120210:intron
TGCACAACACGCGCTTCTTT+GGG 0.366424 1_3:+44855252 Msa0120210:CDS
GGGATTCGCGCTCGGCGGTT+TGG 0.368627 1_3:+44855204 Msa0120210:CDS
ATAAACGGCTCACCAGATAT+AGG 0.371466 1_3:-44857814 None:intergenic
CACATATAGTTTCAAAATCA+TGG 0.388583 1_3:+44859648 Msa0120210:three_prime_UTR
TTGCTATTGTTGGCCCGTCT+GGG 0.392985 1_3:+44857746 Msa0120210:CDS
GCGAAGTTCTTGACCAAGAA+AGG 0.396160 1_3:-44856555 None:intergenic
TTCCATACTTTGCGCAGGTT+CGG 0.403033 1_3:+44856916 Msa0120210:CDS
GGAGAGATAGTTGCTATTGT+TGG 0.403468 1_3:+44857736 Msa0120210:CDS
CCACTTAAAGTTGAGCCTCT+TGG 0.403623 1_3:-44858777 None:intergenic
CACGTTAAGAAGAGCGTATA+AGG 0.409537 1_3:-44855425 None:intergenic
TTCAAACCATTTAGGATATG+AGG 0.415421 1_3:-44857697 None:intergenic
AGCAATATCCCCACTCGAAA+CGG 0.419822 1_3:-44855365 None:intergenic
TGGTTCGAAGGGAGGTGCTT+CGG 0.420084 1_3:-44855018 None:intergenic
TAGGAAAAGCTTACAATGAA+TGG 0.424642 1_3:+44857097 Msa0120210:CDS
TGGTTTGGAATTGGATTGGA+TGG 0.427123 1_3:-44854952 None:intergenic
GCTGATATCAAAGAAAGTTC+AGG 0.428520 1_3:-44856408 None:intergenic
TTGCAGAGAACTTGGTACTA+TGG 0.429606 1_3:-44856349 None:intergenic
GGCTAAAAGAATATTCCTCT+TGG 0.432858 1_3:+44859476 Msa0120210:CDS
TTTGGAGAGAAGGTTGGAAA+GGG 0.438225 1_3:-44855137 None:intergenic
CAGAGTCACTTGAGAGTGTC+AGG 0.442996 1_3:+44856792 Msa0120210:CDS
TCGGCGGTTTGGTTCTTGTT+CGG 0.443065 1_3:+44855215 Msa0120210:CDS
GCAGAAAATTGCAGAGAACT+TGG 0.447259 1_3:-44856357 None:intergenic
ATGGATTCATTGCTATCTTC+TGG 0.449042 1_3:+44859549 Msa0120210:CDS
GCAAACAAGCGTTCAATAGC+TGG 0.452836 1_3:-44857132 None:intergenic
TAGTCCAAATCAACAGCATC+TGG 0.452915 1_3:-44857619 None:intergenic
TTCATTTGATCGCTGTAGCT+TGG 0.457151 1_3:+44856955 Msa0120210:CDS
AATAAATAGCCTGAATAACC+TGG 0.460235 1_3:-44856883 None:intergenic
TTCGTTGAACGCGGTTTATG+AGG 0.460446 1_3:+44855279 Msa0120210:CDS
TAAACGGCTCACCAGATATA+GGG 0.460795 1_3:-44857813 None:intergenic
AAGGTTGGAAAGGGAGTAGA+CGG 0.461254 1_3:-44855128 None:intergenic
GCATTGCAGAAAAGTCCATC+AGG 0.470147 1_3:-44856829 None:intergenic
TGAGGAAATGGGAATGAGAA+TGG 0.470674 1_3:-44854861 None:intergenic
GAGTGTCAGGTTTAAGAGAC+TGG 0.472219 1_3:+44856805 Msa0120210:CDS
TTGAACCTTCATGTTAGGCC+TGG 0.472920 1_3:+44857715 Msa0120210:CDS
AATTTGGTTTGGAATTGGAT+TGG 0.473602 1_3:-44854956 None:intergenic
ATGCAAACATATGAATCAAA+TGG 0.476810 1_3:-44859597 None:intergenic
TTCTATATTGATTCTGGACG+AGG 0.477901 1_3:+44859075 Msa0120210:CDS
CAGAGCCAACCGTAGAGGAT+TGG 0.483918 1_3:-44855094 None:intergenic
GGTTGTTGTGGCGGTGGTGA+CGG 0.484096 1_3:-44855167 None:intergenic
ATTTGGAGAGAAGGTTGGAA+AGG 0.487740 1_3:-44855138 None:intergenic
ATTATGTTTCTTGAGGAAAT+GGG 0.491620 1_3:-44854872 None:intergenic
ACTTTCTTTGATATCAGCTA+TGG 0.492995 1_3:+44856413 Msa0120210:CDS
TAAAGAATCACGCAGGATGT+AGG 0.494584 1_3:+44857078 Msa0120210:intron
TGCTATTGTTGGCCCGTCTG+GGG 0.498020 1_3:+44857747 Msa0120210:CDS
GTCACGCAGGGATTCGCGCT+CGG 0.508109 1_3:+44855196 Msa0120210:CDS
GCTTGTGATCTCTCATCGCT+TGG 0.508979 1_3:+44859440 Msa0120210:CDS
CCAAGAGGCTCAACTTTAAG+TGG 0.510650 1_3:+44858777 Msa0120210:CDS
TCGCTTGGAAACCGTTATGA+TGG 0.513065 1_3:+44859455 Msa0120210:CDS
GTTTAAGAGACTGGCCCTGA+TGG 0.513758 1_3:+44856814 Msa0120210:CDS
CATACTTTGCGCAGGTTCGG+TGG 0.518769 1_3:+44856919 Msa0120210:CDS
TTTGGAATTGGATTGGATGG+AGG 0.519291 1_3:-44854949 None:intergenic
GTTGTTGTTGTTGGTTCGAA+GGG 0.520060 1_3:-44855029 None:intergenic
AACGCTTGTTTGCTATGACC+AGG 0.521675 1_3:+44857142 Msa0120210:CDS
ACGATTGATGAACAAATCAA+TGG 0.522416 1_3:-44859812 None:intergenic
TGCAATGATAATGCATATGT+TGG 0.523394 1_3:+44856377 Msa0120210:CDS
GGTACAGTTGCTGAAAGCAT+TGG 0.524669 1_3:+44858639 Msa0120210:CDS
GGACGAGGCAACTTCTGCGT+TGG 0.525874 1_3:+44859090 Msa0120210:CDS
TGTTGTTGTTGTTGGTTCGA+AGG 0.528253 1_3:-44855030 None:intergenic
GTCTCCTTTAAGTACAATGA+TGG 0.530170 1_3:+44857670 Msa0120210:CDS
GATGAGAGTGAACATGAGAT+TGG 0.532729 1_3:-44854896 None:intergenic
GGTAACGACGCCGTTTCGAG+TGG 0.533942 1_3:+44855355 Msa0120210:CDS
TCTCTTTATGTGTGCGCATG+TGG 0.536930 1_3:+44859673 Msa0120210:three_prime_UTR
ACTTCGCAAAATATCTAAGA+AGG 0.537461 1_3:+44856571 Msa0120210:CDS
CGGCGGAGAATTTGGAGAGA+AGG 0.538064 1_3:-44855147 None:intergenic
GAATCCCTGCGTGACGTCGA+CGG 0.544481 1_3:-44855188 None:intergenic
TGCAGATGCATAACGAATCA+CGG 0.546053 1_3:-44859780 None:intergenic
ACAATAGCAACTATCTCTCC+AGG 0.548439 1_3:-44857733 None:intergenic
CCTCGTTCTACTATGTTGAA+TGG 0.554792 1_3:+44859522 Msa0120210:CDS
GTTCTTTCCATACTTTGCGC+AGG 0.557361 1_3:+44856911 Msa0120210:CDS
GGAGAATTTGGAGAGAAGGT+TGG 0.557861 1_3:-44855143 None:intergenic
GCTATTGTTGGCCCGTCTGG+GGG 0.558455 1_3:+44857748 Msa0120210:CDS
ATAAATAGCCTGAATAACCT+GGG 0.561251 1_3:-44856882 None:intergenic
TCCAAGGAAAATTGAGCCAA+GGG 0.562182 1_3:-44859889 None:intergenic
TCTCTCCAGGCCTAACATGA+AGG 0.562303 1_3:-44857720 None:intergenic
CAGAGTTTAAGAAGACATGT+TGG 0.562645 1_3:+44858039 Msa0120210:CDS
GCTTACAATGAATGGAGAGA+AGG 0.564869 1_3:+44857105 Msa0120210:CDS
GAGAATGGAGTTTGAAACAT+GGG 0.565369 1_3:-44854846 None:intergenic
GATTGGCATTATGTTTCTTG+AGG 0.568970 1_3:-44854879 None:intergenic
TGAGAATGGAGTTTGAAACA+TGG 0.573309 1_3:-44854847 None:intergenic
TTTATTAGAAAACTTCCAGA+AGG 0.574855 1_3:+44858735 Msa0120210:CDS
TTCCAAGGAAAATTGAGCCA+AGG 0.576098 1_3:-44859890 None:intergenic
TTGATTTGGACTATGTTACA+GGG 0.577115 1_3:+44857629 Msa0120210:CDS
CAAGCTTTCCATTATCCAAG+AGG 0.577336 1_3:-44859491 None:intergenic
TCTCTCAGCTTATCTGAATG+AGG 0.578614 1_3:+44856613 Msa0120210:CDS
GGTTCGGTGGTGATTTCAAG+AGG 0.578745 1_3:+44856932 Msa0120210:CDS
GCAGATGCATAACGAATCAC+GGG 0.580097 1_3:-44859779 None:intergenic
TAAGTGGAGGCCAGAAGCAA+AGG 0.582508 1_3:+44858793 Msa0120210:CDS
TACTATGTTGAATGGTCACA+TGG 0.582719 1_3:+44859530 Msa0120210:CDS
GTCGACGGTTGTTGTGGCGG+TGG 0.585158 1_3:-44855173 None:intergenic
CGCTGCAGAGCCAACCGTAG+AGG 0.589850 1_3:-44855099 None:intergenic
GTTGTTGTTGGTTCGAAGGG+AGG 0.603660 1_3:-44855026 None:intergenic
TTACAGGCTGGCTATTGCAA+GGG 0.604140 1_3:+44859036 Msa0120210:intron
AACAACCGTCGACGTCACGC+AGG 0.605708 1_3:+44855183 Msa0120210:CDS
CTTACAGGCTGGCTATTGCA+AGG 0.606094 1_3:+44859035 Msa0120210:intron
GTAACGACGCCGTTTCGAGT+GGG 0.606585 1_3:+44855356 Msa0120210:CDS
AAGAAGAGCGTATAAGGTAG+CGG 0.608177 1_3:-44855419 None:intergenic
GATGAAAGCAGTAATTCCCC+AGG 0.609146 1_3:+44856865 Msa0120210:CDS
CGTGACGTCGACGGTTGTTG+TGG 0.611347 1_3:-44855179 None:intergenic
TAACGACGCCGTTTCGAGTG+GGG 0.611528 1_3:+44855357 Msa0120210:CDS
CTTAAAAGGAGTCTGACCCT+TGG 0.615573 1_3:+44859873 Msa0120210:three_prime_UTR
GACGTCGACGGTTGTTGTGG+CGG 0.616457 1_3:-44855176 None:intergenic
CGCTTTCACAAAGAGATACG+CGG 0.623202 1_3:-44856762 None:intergenic
TTGGGAAGCTTCGTTGAACG+CGG 0.628873 1_3:+44855270 Msa0120210:CDS
TGTTCGATCGTGTGTTGCAG+AGG 0.633124 1_3:+44855314 Msa0120210:CDS
TGTTGTGGCGGTGGTGACGG+CGG 0.634312 1_3:-44855164 None:intergenic
AATACCAATATTGGACCAAG+AGG 0.636919 1_3:+44858762 Msa0120210:CDS
GCTTTCACAAAGAGATACGC+GGG 0.637972 1_3:-44856761 None:intergenic
ATGTTTGCATATCTACTGTG+AGG 0.639245 1_3:+44859610 Msa0120210:three_prime_UTR
CTCATATTCAAATTCAGACA+AGG 0.639888 1_3:-44859714 None:intergenic
GTAACAACTAGAACCATACA+AGG 0.646113 1_3:-44856533 None:intergenic
AAGCGCGTGTTGTGCATACG+TGG 0.649016 1_3:-44855245 None:intergenic
GCGTTTAATGGAAAATCGCA+CGG 0.651374 1_3:+44859150 Msa0120210:CDS
ACAACCGTCGACGTCACGCA+GGG 0.654065 1_3:+44855184 Msa0120210:CDS
AGAGGCTCAACTTTAAGTGG+AGG 0.656903 1_3:+44858780 Msa0120210:CDS
ACGCAGGGATTCGCGCTCGG+CGG 0.660721 1_3:+44855199 Msa0120210:CDS
GTTCGATCGTGTGTTGCAGA+GGG 0.670470 1_3:+44855315 Msa0120210:CDS
CATTGCAGAAAAGTCCATCA+GGG 0.673067 1_3:-44856828 None:intergenic
AACCATTTAGGATATGAGGT+AGG 0.674813 1_3:-44857693 None:intergenic
TGATTTGGACTATGTTACAG+GGG 0.677901 1_3:+44857630 Msa0120210:CDS
TAAATAGCCTGAATAACCTG+GGG 0.687037 1_3:-44856881 None:intergenic
CCATTCAACATAGTAGAACG+AGG 0.706113 1_3:-44859522 None:intergenic
GTTGTTAGTGAGACAAGCTG+TGG 0.729540 1_3:+44859126 Msa0120210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAACTGTAAAATTTA+TGG + chr1_3:44855695-44855714 Msa0120210:intron 10.0%
!!! AACAAATTTTAAAAGTAAAT+TGG - chr1_3:44855845-44855864 None:intergenic 10.0%
!!! CAGAAATATATATTTTAAAA+GGG - chr1_3:44858317-44858336 None:intergenic 10.0%
!!! TCAGAAATATATATTTTAAA+AGG - chr1_3:44858318-44858337 None:intergenic 10.0%
!! TTAAATAAAATGAGAAATAG+AGG + chr1_3:44856130-44856149 Msa0120210:intron 15.0%
!!! AAAATTTTAAACAGTAAAAC+AGG - chr1_3:44857357-44857376 None:intergenic 15.0%
!!! AGCTTTTTTTAAAAAACAAA+GGG - chr1_3:44857539-44857558 None:intergenic 15.0%
!!! TAGCTTTTTTTAAAAAACAA+AGG - chr1_3:44857540-44857559 None:intergenic 15.0%
!!! ATACTTAATTTTATCATGTA+TGG + chr1_3:44857848-44857867 Msa0120210:intron 15.0%
!! AATTAGTATAAGAAATGTAT+TGG - chr1_3:44857898-44857917 None:intergenic 15.0%
!!! ATATATATTTTAAAAGGGAT+TGG - chr1_3:44858312-44858331 None:intergenic 15.0%
!!! TTAATACATCATTTTGAATA+TGG - chr1_3:44858456-44858475 None:intergenic 15.0%
!! ACTGTAAAATTTATGGTTAA+TGG + chr1_3:44855702-44855721 Msa0120210:intron 20.0%
!!! GTTAATGGCATTTAAAATTA+TGG + chr1_3:44855717-44855736 Msa0120210:intron 20.0%
!! TCTAAAAAAATGAACATTAG+GGG - chr1_3:44856061-44856080 None:intergenic 20.0%
!!! CTCTAAAAAAATGAACATTA+GGG - chr1_3:44856062-44856081 None:intergenic 20.0%
!! CATTCAACATATTATACAAA+GGG - chr1_3:44856097-44856116 None:intergenic 20.0%
!! TCATTCAACATATTATACAA+AGG - chr1_3:44856098-44856117 None:intergenic 20.0%
!!! TACTTTTTAGTTCAATTGAT+TGG + chr1_3:44856272-44856291 Msa0120210:intron 20.0%
!! AAAATGTAAAACAATGGAAA+AGG - chr1_3:44857252-44857271 None:intergenic 20.0%
!! GAAAAGAAAATGTAAAACAA+TGG - chr1_3:44857258-44857277 None:intergenic 20.0%
!! GGAAATAAGAAAAAAAATCT+AGG + chr1_3:44857306-44857325 Msa0120210:intron 20.0%
!! ATAAGAAAAAAAATCTAGGA+TGG + chr1_3:44857310-44857329 Msa0120210:intron 20.0%
!!! CTTTTTTTAAAAAACAAAGG+GGG - chr1_3:44857537-44857556 None:intergenic 20.0%
!!! GCTTTTTTTAAAAAACAAAG+GGG - chr1_3:44857538-44857557 None:intergenic 20.0%
!! TTTCTTTCTTTCTGAATAAT+AGG + chr1_3:44857585-44857604 Msa0120210:intron 20.0%
!!! TAAAAAATGTACAAGCTTTT+AGG + chr1_3:44858156-44858175 Msa0120210:intron 20.0%
!! TGATAAACTAGTATAAATTC+AGG + chr1_3:44858219-44858238 Msa0120210:intron 20.0%
!! TAAATGATGAGGATAATTAT+AGG - chr1_3:44858347-44858366 None:intergenic 20.0%
!!! AAATTCTTCTATATTGATTC+TGG + chr1_3:44859069-44859088 Msa0120210:CDS 20.0%
!! CAAAACTATAAGAATTACTA+AGG - chr1_3:44859359-44859378 None:intergenic 20.0%
!! AAGTAAATTTCTCACTTAAA+AGG + chr1_3:44859859-44859878 Msa0120210:three_prime_UTR 20.0%
! ATTATGTTTCTTGAGGAAAT+GGG - chr1_3:44854875-44854894 None:intergenic 25.0%
! CAGTGTAAAAAGTTCTATAT+AGG + chr1_3:44855598-44855617 Msa0120210:intron 25.0%
! TTATGGTTTATTACGTTCAA+TGG + chr1_3:44855734-44855753 Msa0120210:intron 25.0%
!! GCTTGTTAATGAATATAACA+AGG - chr1_3:44855780-44855799 None:intergenic 25.0%
!! CCTCTAAAAAAATGAACATT+AGG - chr1_3:44856063-44856082 None:intergenic 25.0%
!!! CCTAATGTTCATTTTTTTAG+AGG + chr1_3:44856060-44856079 Msa0120210:intron 25.0%
! AACATATTATACAAAGGGAT+AGG - chr1_3:44856092-44856111 None:intergenic 25.0%
! GTATAATATGTTGAATGAGA+AGG + chr1_3:44856100-44856119 Msa0120210:intron 25.0%
! GAACATAAATGGAATTATTG+TGG - chr1_3:44856231-44856250 None:intergenic 25.0%
! GCAAATAAATGGAACATAAA+TGG - chr1_3:44856242-44856261 None:intergenic 25.0%
! TTCTTCTTAAAGTACAATGA+AGG - chr1_3:44856660-44856679 None:intergenic 25.0%
!! GTTATTCAGGCTATTTATTT+TGG + chr1_3:44856887-44856906 Msa0120210:CDS 25.0%
!!! ATTTACCTTATTTTTGAACC+TGG - chr1_3:44857163-44857182 None:intergenic 25.0%
!!! CTGAATTTTGTTTGAAATTG+AGG + chr1_3:44857285-44857304 Msa0120210:intron 25.0%
!!! CTGTTTAAAATTTTCTGTCA+AGG + chr1_3:44857363-44857382 Msa0120210:intron 25.0%
!!! GTTTTAACTGAAACAAAGTT+TGG + chr1_3:44858256-44858275 Msa0120210:intron 25.0%
!!! AACCAATTTTGAGACAAAAA+TGG - chr1_3:44858485-44858504 None:intergenic 25.0%
!!! TTTTTTAAAACTGGTTCTTG+TGG - chr1_3:44858509-44858528 None:intergenic 25.0%
!!! AGAACCAGTTTTAAAAAACT+TGG + chr1_3:44858511-44858530 Msa0120210:intron 25.0%
!!! GAACCAGTTTTAAAAAACTT+GGG + chr1_3:44858512-44858531 Msa0120210:intron 25.0%
! TTTATTAGAAAACTTCCAGA+AGG + chr1_3:44858735-44858754 Msa0120210:CDS 25.0%
! TAACTTGATAAAGAAAACCA+TGG + chr1_3:44858885-44858904 Msa0120210:intron 25.0%
!! GTTTTCAATATGTTAGTCAT+TGG + chr1_3:44859317-44859336 Msa0120210:intron 25.0%
!! TATTCTTTTAGCCATCATAA+CGG - chr1_3:44859469-44859488 None:intergenic 25.0%
! ATGCAAACATATGAATCAAA+TGG - chr1_3:44859600-44859619 None:intergenic 25.0%
! CACATATAGTTTCAAAATCA+TGG + chr1_3:44859648-44859667 Msa0120210:three_prime_UTR 25.0%
!! AATAGATTTTCCAAATTCCA+AGG - chr1_3:44859908-44859927 None:intergenic 25.0%
CATTATGTTTCTTGAGGAAA+TGG - chr1_3:44854876-44854895 None:intergenic 30.0%
!! AATTTGGTTTGGAATTGGAT+TGG - chr1_3:44854959-44854978 None:intergenic 30.0%
!!! TTAGGTATGGTTTTAGGAAT+TGG - chr1_3:44855060-44855079 None:intergenic 30.0%
! ACCATTTTACACACAAACTT+TGG + chr1_3:44855499-44855518 Msa0120210:intron 30.0%
ACCAAAGTTTGTGTGTAAAA+TGG - chr1_3:44855503-44855522 None:intergenic 30.0%
! CTTCAAAAGTTTTACACTGT+AGG - chr1_3:44855554-44855573 None:intergenic 30.0%
! GTCATACAAAGTACCATATT+AGG - chr1_3:44855965-44855984 None:intergenic 30.0%
CGCAAATTTATTGTACTTTG+TGG + chr1_3:44856012-44856031 Msa0120210:intron 30.0%
ATGAGAAATAGAGGATTGAA+TGG + chr1_3:44856139-44856158 Msa0120210:intron 30.0%
AAATAGAGGATTGAATGGTT+GGG + chr1_3:44856144-44856163 Msa0120210:intron 30.0%
TACAAGCAAAAACATGAGAA+GGG - chr1_3:44856194-44856213 None:intergenic 30.0%
ATGTTCCATTTATTTGCATG+CGG + chr1_3:44856245-44856264 Msa0120210:intron 30.0%
AAAAACCGCATGCAAATAAA+TGG - chr1_3:44856253-44856272 None:intergenic 30.0%
! TGCAATGATAATGCATATGT+TGG + chr1_3:44856377-44856396 Msa0120210:CDS 30.0%
ACTTTCTTTGATATCAGCTA+TGG + chr1_3:44856413-44856432 Msa0120210:CDS 30.0%
! TTCTGAAAGAACAATCAAGT+GGG - chr1_3:44856466-44856485 None:intergenic 30.0%
! TTTCTGAAAGAACAATCAAG+TGG - chr1_3:44856467-44856486 None:intergenic 30.0%
ATTGTTCTTTCAGAAAGACT+AGG + chr1_3:44856471-44856490 Msa0120210:intron 30.0%
ACTTCGCAAAATATCTAAGA+AGG + chr1_3:44856571-44856590 Msa0120210:CDS 30.0%
ATAAATAGCCTGAATAACCT+GGG - chr1_3:44856885-44856904 None:intergenic 30.0%
AATAAATAGCCTGAATAACC+TGG - chr1_3:44856886-44856905 None:intergenic 30.0%
TTTCTTAATTGAGCCTATTC+AGG + chr1_3:44857000-44857019 Msa0120210:CDS 30.0%
CATGATAACAATACCTGAAT+AGG - chr1_3:44857016-44857035 None:intergenic 30.0%
! CTATTCAGGTATTGTTATCA+TGG + chr1_3:44857014-44857033 Msa0120210:intron 30.0%
CTTAAAATAAAGAATCACGC+AGG + chr1_3:44857071-44857090 Msa0120210:intron 30.0%
TAGGAAAAGCTTACAATGAA+TGG + chr1_3:44857097-44857116 Msa0120210:CDS 30.0%
TATGACCAGGTTCAAAAATA+AGG + chr1_3:44857155-44857174 Msa0120210:CDS 30.0%
TGTAAAACAATGGAAAAGGA+AGG - chr1_3:44857248-44857267 None:intergenic 30.0%
ACCATGTAATGTAATCTCAA+TGG + chr1_3:44857435-44857454 Msa0120210:intron 30.0%
TCCATTGAGATTACATTACA+TGG - chr1_3:44857439-44857458 None:intergenic 30.0%
!! TTGATTTGGACTATGTTACA+GGG + chr1_3:44857629-44857648 Msa0120210:CDS 30.0%
! TTCAAACCATTTAGGATATG+AGG - chr1_3:44857700-44857719 None:intergenic 30.0%
TTATCATGTATGGTTTAGCA+TGG + chr1_3:44857858-44857877 Msa0120210:intron 30.0%
TATCATGTATGGTTTAGCAT+GGG + chr1_3:44857859-44857878 Msa0120210:intron 30.0%
! ATTCTTCTTCTTTTGTATGC+AGG + chr1_3:44858109-44858128 Msa0120210:intron 30.0%
AACAGTATCAAACCAGTTAT+GGG - chr1_3:44858197-44858216 None:intergenic 30.0%
AAACAGTATCAAACCAGTTA+TGG - chr1_3:44858198-44858217 None:intergenic 30.0%
TTAAGGGTAGATAAATGATG+AGG - chr1_3:44858358-44858377 None:intergenic 30.0%
TAGAATGGAAAAGAGAGAAT+TGG + chr1_3:44858408-44858427 Msa0120210:intron 30.0%
!! CACCATTTTTGTCTCAAAAT+TGG + chr1_3:44858480-44858499 Msa0120210:intron 30.0%
ACTTCAATCTCAAATACTGA+TGG + chr1_3:44858591-44858610 Msa0120210:intron 30.0%
!!! TGATTGTAGACACTTTTTTC+AGG + chr1_3:44858618-44858637 Msa0120210:intron 30.0%
TCTGACAACAAAAATTGACA+TGG + chr1_3:44858671-44858690 Msa0120210:CDS 30.0%
ATATTGGTATTGTATCCTTC+TGG - chr1_3:44858753-44858772 None:intergenic 30.0%
GAAGGATACAATACCAATAT+TGG + chr1_3:44858753-44858772 Msa0120210:CDS 30.0%
TGAAAATTTACCTTTGCTTC+TGG - chr1_3:44858806-44858825 None:intergenic 30.0%
TTATCAAGTCTGTTAGTTCA+TGG - chr1_3:44858856-44858875 None:intergenic 30.0%
CAAAATTAGCTGTTAATCCA+TGG - chr1_3:44858905-44858924 None:intergenic 30.0%
! TTCTGTTTGAAAAGAGCTTT+TGG + chr1_3:44858925-44858944 Msa0120210:intron 30.0%
CACATGACAAATAACAGAAA+AGG - chr1_3:44859188-44859207 None:intergenic 30.0%
AACATTCTTCCTATGTTCAT+AGG + chr1_3:44859416-44859435 Msa0120210:intron 30.0%
AGAATATTCCTCTTGGATAA+TGG + chr1_3:44859483-44859502 Msa0120210:CDS 30.0%
CTCATATTCAAATTCAGACA+AGG - chr1_3:44859717-44859736 None:intergenic 30.0%
ACGATTGATGAACAAATCAA+TGG - chr1_3:44859815-44859834 None:intergenic 30.0%
! CGAAAAAGGTGAAACTTGTT+TGG - chr1_3:44854797-44854816 None:intergenic 35.0%
! GAGAATGGAGTTTGAAACAT+GGG - chr1_3:44854849-44854868 None:intergenic 35.0%
! TGAGAATGGAGTTTGAAACA+TGG - chr1_3:44854850-44854869 None:intergenic 35.0%
GATTGGCATTATGTTTCTTG+AGG - chr1_3:44854882-44854901 None:intergenic 35.0%
!! TTCGGAATTTGGTTTGGAAT+TGG - chr1_3:44854964-44854983 None:intergenic 35.0%
!!! TTTTGGTTCGGAATTTGGTT+TGG - chr1_3:44854970-44854989 None:intergenic 35.0%
!!! GTTGTTTTTGGTTCGGAATT+TGG - chr1_3:44854975-44854994 None:intergenic 35.0%
! TTGGATTGTGTTGTTGTTGT+TGG - chr1_3:44855041-44855060 None:intergenic 35.0%
!!! GTAGAGGATTGGTTTTTGTT+GGG - chr1_3:44855086-44855105 None:intergenic 35.0%
CAACAAAAACCAATCCTCTA+CGG + chr1_3:44855085-44855104 Msa0120210:CDS 35.0%
AAGCTCACAACAGTACTTAT+TGG + chr1_3:44855571-44855590 Msa0120210:intron 35.0%
AATGGATAACTTACGAGTTG+TGG + chr1_3:44855752-44855771 Msa0120210:intron 35.0%
! ATTTTTGTCACCCTGTTACA+TGG + chr1_3:44855928-44855947 Msa0120210:intron 35.0%
CACAGATTCGTCATTTATTG+GGG - chr1_3:44855987-44856006 None:intergenic 35.0%
GCACAGATTCGTCATTTATT+GGG - chr1_3:44855988-44856007 None:intergenic 35.0%
TGCACAGATTCGTCATTTAT+TGG - chr1_3:44855989-44856008 None:intergenic 35.0%
TTATTGTACTTTGTGGTGTG+AGG + chr1_3:44856019-44856038 Msa0120210:intron 35.0%
TATTGTACTTTGTGGTGTGA+GGG + chr1_3:44856020-44856039 Msa0120210:intron 35.0%
GAAATAGAGGATTGAATGGT+TGG + chr1_3:44856143-44856162 Msa0120210:intron 35.0%
AATAGAGGATTGAATGGTTG+GGG + chr1_3:44856145-44856164 Msa0120210:intron 35.0%
CTACAAGCAAAAACATGAGA+AGG - chr1_3:44856195-44856214 None:intergenic 35.0%
GCTGATATCAAAGAAAGTTC+AGG - chr1_3:44856411-44856430 None:intergenic 35.0%
! GTTATGCTTTTGCAAATTGC+AGG + chr1_3:44856505-44856524 Msa0120210:intron 35.0%
ATTGCAGGTTATTCCTTGTA+TGG + chr1_3:44856520-44856539 Msa0120210:intron 35.0%
GTAACAACTAGAACCATACA+AGG - chr1_3:44856536-44856555 None:intergenic 35.0%
! GTTCTAGTTGTTACCTTTCT+TGG + chr1_3:44856542-44856561 Msa0120210:CDS 35.0%
GGGGAAAAATATTGAACACA+GGG - chr1_3:44856723-44856742 None:intergenic 35.0%
CTGCAATGCTGAACAAAAAA+AGG + chr1_3:44856843-44856862 Msa0120210:CDS 35.0%
TAAATAGCCTGAATAACCTG+GGG - chr1_3:44856884-44856903 None:intergenic 35.0%
! TTATCATGGTTCAGCTTTTG+AGG + chr1_3:44857028-44857047 Msa0120210:intron 35.0%
TTCATGACCACTTGCTTAAA+AGG + chr1_3:44857182-44857201 Msa0120210:intron 35.0%
TAAAAGGCCCTATATGACAT+TGG + chr1_3:44857198-44857217 Msa0120210:intron 35.0%
TGCAGATCCAATGTCATATA+GGG - chr1_3:44857208-44857227 None:intergenic 35.0%
ATGCAGATCCAATGTCATAT+AGG - chr1_3:44857209-44857228 None:intergenic 35.0%
TAATGTAATCTCAATGGACG+AGG + chr1_3:44857441-44857460 Msa0120210:intron 35.0%
!! GTTGATTTGGACTATGTTAC+AGG + chr1_3:44857628-44857647 Msa0120210:CDS 35.0%
! TGATTTGGACTATGTTACAG+GGG + chr1_3:44857630-44857649 Msa0120210:CDS 35.0%
GTCTCCTTTAAGTACAATGA+TGG + chr1_3:44857670-44857689 Msa0120210:CDS 35.0%
TAGGCCATCATTGTACTTAA+AGG - chr1_3:44857677-44857696 None:intergenic 35.0%
! AACCATTTAGGATATGAGGT+AGG - chr1_3:44857696-44857715 None:intergenic 35.0%
CATGAAGGTTCAAACCATTT+AGG - chr1_3:44857708-44857727 None:intergenic 35.0%
ATGGTTTGAACCTTCATGTT+AGG + chr1_3:44857710-44857729 Msa0120210:CDS 35.0%
ATTCATATTCTTATACGCGC+AGG + chr1_3:44857973-44857992 Msa0120210:intron 35.0%
CAGAGTTTAAGAAGACATGT+TGG + chr1_3:44858039-44858058 Msa0120210:CDS 35.0%
! TACCCTTAAGATCTAGCTTA+AGG + chr1_3:44858369-44858388 Msa0120210:intron 35.0%
! ACCCTTAAGATCTAGCTTAA+GGG + chr1_3:44858370-44858389 Msa0120210:intron 35.0%
GAGAGAAAGGAAGAATAGAA+TGG + chr1_3:44858393-44858412 Msa0120210:intron 35.0%
GGAAAAGAGAGAATTGGAAA+TGG + chr1_3:44858414-44858433 Msa0120210:intron 35.0%
!!! GCACCCAAGTTTTTTAAAAC+TGG - chr1_3:44858518-44858537 None:intergenic 35.0%
! GTCTTTACACATAAGGTGTT+TGG - chr1_3:44858540-44858559 None:intergenic 35.0%
AACTAGATATCTAAGTGCAG+TGG - chr1_3:44858568-44858587 None:intergenic 35.0%
!! TTGCTGAAAGCATTGGTTAT+AGG + chr1_3:44858646-44858665 Msa0120210:CDS 35.0%
!! TGCTGAAAGCATTGGTTATA+GGG + chr1_3:44858647-44858666 Msa0120210:CDS 35.0%
AATACCAATATTGGACCAAG+AGG + chr1_3:44858762-44858781 Msa0120210:CDS 35.0%
ACTTCGTTTCTCAAACTTAC+AGG + chr1_3:44859020-44859039 Msa0120210:intron 35.0%
!! TTCTATATTGATTCTGGACG+AGG + chr1_3:44859075-44859094 Msa0120210:CDS 35.0%
! AGAATGTTTGAAGCTTCACA+GGG - chr1_3:44859404-44859423 None:intergenic 35.0%
! AAGAATGTTTGAAGCTTCAC+AGG - chr1_3:44859405-44859424 None:intergenic 35.0%
GGCTAAAAGAATATTCCTCT+TGG + chr1_3:44859476-44859495 Msa0120210:CDS 35.0%
TACTATGTTGAATGGTCACA+TGG + chr1_3:44859530-44859549 Msa0120210:CDS 35.0%
ATGGATTCATTGCTATCTTC+TGG + chr1_3:44859549-44859568 Msa0120210:CDS 35.0%
ATGTTTGCATATCTACTGTG+AGG + chr1_3:44859610-44859629 Msa0120210:three_prime_UTR 35.0%
! GCTCAATTTTCCTTGGAATT+TGG + chr1_3:44859895-44859914 Msa0120210:three_prime_UTR 35.0%
TGAGGAAATGGGAATGAGAA+TGG - chr1_3:44854864-44854883 None:intergenic 40.0%
GATGAGAGTGAACATGAGAT+TGG - chr1_3:44854899-44854918 None:intergenic 40.0%
! ATTGGATTGGATGGAGGTTT+GGG - chr1_3:44854946-44854965 None:intergenic 40.0%
! AATTGGATTGGATGGAGGTT+TGG - chr1_3:44854947-44854966 None:intergenic 40.0%
! TTTGGAATTGGATTGGATGG+AGG - chr1_3:44854952-44854971 None:intergenic 40.0%
! TGGTTTGGAATTGGATTGGA+TGG - chr1_3:44854955-44854974 None:intergenic 40.0%
!!! AGTGGTGGTTGTTTTTGGTT+CGG - chr1_3:44854982-44855001 None:intergenic 40.0%
!!! TGCTTCGGATTTTTAGGTTC+GGG - chr1_3:44855006-44855025 None:intergenic 40.0%
!!! GTGCTTCGGATTTTTAGGTT+CGG - chr1_3:44855007-44855026 None:intergenic 40.0%
!! GTTGTTGTTGTTGGTTCGAA+GGG - chr1_3:44855032-44855051 None:intergenic 40.0%
!! TGTTGTTGTTGTTGGTTCGA+AGG - chr1_3:44855033-44855052 None:intergenic 40.0%
! TTTTGTTGGGAGGTTAGGTA+TGG - chr1_3:44855073-44855092 None:intergenic 40.0%
!! TTGGTTTTTGTTGGGAGGTT+AGG - chr1_3:44855078-44855097 None:intergenic 40.0%
!!! CGTAGAGGATTGGTTTTTGT+TGG - chr1_3:44855087-44855106 None:intergenic 40.0%
AAAAACCAATCCTCTACGGT+TGG + chr1_3:44855089-44855108 Msa0120210:CDS 40.0%
TTTGGAGAGAAGGTTGGAAA+GGG - chr1_3:44855140-44855159 None:intergenic 40.0%
ATTTGGAGAGAAGGTTGGAA+AGG - chr1_3:44855141-44855160 None:intergenic 40.0%
!!! AGGGAACTTGCGTTTTTTGA+AGG + chr1_3:44855334-44855353 Msa0120210:CDS 40.0%
! AAGAAGAGCGTATAAGGTAG+CGG - chr1_3:44855422-44855441 None:intergenic 40.0%
! CACGTTAAGAAGAGCGTATA+AGG - chr1_3:44855428-44855447 None:intergenic 40.0%
ACAATCCATGCCATGTAACA+GGG - chr1_3:44855941-44855960 None:intergenic 40.0%
TACAATCCATGCCATGTAAC+AGG - chr1_3:44855942-44855961 None:intergenic 40.0%
! GGCATGGATTGTACCTAATA+TGG + chr1_3:44855949-44855968 Msa0120210:intron 40.0%
ATTGTACTTTGTGGTGTGAG+GGG + chr1_3:44856021-44856040 Msa0120210:intron 40.0%
ATAGAGGATTGAATGGTTGG+GGG + chr1_3:44856146-44856165 Msa0120210:intron 40.0%
CTATGGTCTGTCAGAAACAA+GGG - chr1_3:44856335-44856354 None:intergenic 40.0%
ACTATGGTCTGTCAGAAACA+AGG - chr1_3:44856336-44856355 None:intergenic 40.0%
TTGCAGAGAACTTGGTACTA+TGG - chr1_3:44856352-44856371 None:intergenic 40.0%
GCAGAAAATTGCAGAGAACT+TGG - chr1_3:44856360-44856379 None:intergenic 40.0%
TCTCTCAGCTTATCTGAATG+AGG + chr1_3:44856613-44856632 Msa0120210:CDS 40.0%
CAAGATTTGCAAACAGTGCA+AGG - chr1_3:44856693-44856712 None:intergenic 40.0%
GGGGGAAAAATATTGAACAC+AGG - chr1_3:44856724-44856743 None:intergenic 40.0%
GCAGCATCTAATTGTTTAGG+GGG - chr1_3:44856742-44856761 None:intergenic 40.0%
GGCAGCATCTAATTGTTTAG+GGG - chr1_3:44856743-44856762 None:intergenic 40.0%
GGGCAGCATCTAATTGTTTA+GGG - chr1_3:44856744-44856763 None:intergenic 40.0%
CATTGCAGAAAAGTCCATCA+GGG - chr1_3:44856831-44856850 None:intergenic 40.0%
AGTAATTCCCCAGGTTATTC+AGG + chr1_3:44856874-44856893 Msa0120210:CDS 40.0%
TTCATTTGATCGCTGTAGCT+TGG + chr1_3:44856955-44856974 Msa0120210:CDS 40.0%
TAAAGAATCACGCAGGATGT+AGG + chr1_3:44857078-44857097 Msa0120210:intron 40.0%
GCTTACAATGAATGGAGAGA+AGG + chr1_3:44857105-44857124 Msa0120210:CDS 40.0%
! TATAGGGCCTTTTAAGCAAG+TGG - chr1_3:44857192-44857211 None:intergenic 40.0%
! GAAACCAGATGCTGTTGATT+TGG + chr1_3:44857615-44857634 Msa0120210:CDS 40.0%
TAGTCCAAATCAACAGCATC+TGG - chr1_3:44857622-44857641 None:intergenic 40.0%
AGGAGACATCACAGAATTTC+AGG - chr1_3:44857657-44857676 None:intergenic 40.0%
ACAATAGCAACTATCTCTCC+AGG - chr1_3:44857736-44857755 None:intergenic 40.0%
! GGAGAGATAGTTGCTATTGT+TGG + chr1_3:44857736-44857755 Msa0120210:CDS 40.0%
! CACTTGCAAAACTGTTGCTT+CGG + chr1_3:44857782-44857801 Msa0120210:CDS 40.0%
TAAACGGCTCACCAGATATA+GGG - chr1_3:44857816-44857835 None:intergenic 40.0%
ATAAACGGCTCACCAGATAT+AGG - chr1_3:44857817-44857836 None:intergenic 40.0%
AACTCTGCAAACGAATGTTC+TGG - chr1_3:44858026-44858045 None:intergenic 40.0%
!! ACAAGCTTTTAGGAGCAGTT+TGG + chr1_3:44858166-44858185 Msa0120210:intron 40.0%
CCCCTTAAGCTAGATCTTAA+GGG - chr1_3:44858374-44858393 None:intergenic 40.0%
! CCCTTAAGATCTAGCTTAAG+GGG + chr1_3:44858371-44858390 Msa0120210:intron 40.0%
TCCCCTTAAGCTAGATCTTA+AGG - chr1_3:44858375-44858394 None:intergenic 40.0%
!! GGAGCTAGTCTTTACACATA+AGG - chr1_3:44858547-44858566 None:intergenic 40.0%
GCGTTTAATGGAAAATCGCA+CGG + chr1_3:44859150-44859169 Msa0120210:CDS 40.0%
TAATGGAAAATCGCACGGTA+TGG + chr1_3:44859155-44859174 Msa0120210:intron 40.0%
AAGCTTCACAGGGAAGAAAA+GGG - chr1_3:44859394-44859413 None:intergenic 40.0%
TCACAAGCACCTATGAACAT+AGG - chr1_3:44859428-44859447 None:intergenic 40.0%
CAAGCTTTCCATTATCCAAG+AGG - chr1_3:44859494-44859513 None:intergenic 40.0%
CCATTCAACATAGTAGAACG+AGG - chr1_3:44859525-44859544 None:intergenic 40.0%
CCTCGTTCTACTATGTTGAA+TGG + chr1_3:44859522-44859541 Msa0120210:CDS 40.0%
TGCAGATGCATAACGAATCA+CGG - chr1_3:44859783-44859802 None:intergenic 40.0%
TCCAAGGAAAATTGAGCCAA+GGG - chr1_3:44859892-44859911 None:intergenic 40.0%
TTCCAAGGAAAATTGAGCCA+AGG - chr1_3:44859893-44859912 None:intergenic 40.0%
CGAGAGAAATCTCGCGAAAA+AGG - chr1_3:44854811-44854830 None:intergenic 45.0%
! TTGGATGGAGGTTTGGGTTT+GGG - chr1_3:44854940-44854959 None:intergenic 45.0%
! ATTGGATGGAGGTTTGGGTT+TGG - chr1_3:44854941-44854960 None:intergenic 45.0%
!!! TTTTTAGGTTCGGGAAGTGG+TGG - chr1_3:44854997-44855016 None:intergenic 45.0%
!!! GGATTTTTAGGTTCGGGAAG+TGG - chr1_3:44855000-44855019 None:intergenic 45.0%
! GGGAGGTTAGGTATGGTTTT+AGG - chr1_3:44855066-44855085 None:intergenic 45.0%
!!! GAGGATTGGTTTTTGTTGGG+AGG - chr1_3:44855083-44855102 None:intergenic 45.0%
AAGGTTGGAAAGGGAGTAGA+CGG - chr1_3:44855131-44855150 None:intergenic 45.0%
GGAGAATTTGGAGAGAAGGT+TGG - chr1_3:44855146-44855165 None:intergenic 45.0%
TTCGTTGAACGCGGTTTATG+AGG + chr1_3:44855279-44855298 Msa0120210:CDS 45.0%
AGCAATATCCCCACTCGAAA+CGG - chr1_3:44855368-44855387 None:intergenic 45.0%
TATCAGCTATGGTGAGTCAG+AGG + chr1_3:44856424-44856443 Msa0120210:intron 45.0%
GCGAAGTTCTTGACCAAGAA+AGG - chr1_3:44856558-44856577 None:intergenic 45.0%
CGGGCAGCATCTAATTGTTT+AGG - chr1_3:44856745-44856764 None:intergenic 45.0%
GCTTTCACAAAGAGATACGC+GGG - chr1_3:44856764-44856783 None:intergenic 45.0%
CGCTTTCACAAAGAGATACG+CGG - chr1_3:44856765-44856784 None:intergenic 45.0%
GAGTGTCAGGTTTAAGAGAC+TGG + chr1_3:44856805-44856824 Msa0120210:CDS 45.0%
GCATTGCAGAAAAGTCCATC+AGG - chr1_3:44856832-44856851 None:intergenic 45.0%
GATGAAAGCAGTAATTCCCC+AGG + chr1_3:44856865-44856884 Msa0120210:CDS 45.0%
GTTCTTTCCATACTTTGCGC+AGG + chr1_3:44856911-44856930 Msa0120210:CDS 45.0%
TTCCATACTTTGCGCAGGTT+CGG + chr1_3:44856916-44856935 Msa0120210:CDS 45.0%
!! AGCTTTTGAGGAGCTGTCTT+TGG + chr1_3:44857040-44857059 Msa0120210:intron 45.0%
GCAAACAAGCGTTCAATAGC+TGG - chr1_3:44857135-44857154 None:intergenic 45.0%
!! AACGCTTGTTTGCTATGACC+AGG + chr1_3:44857142-44857161 Msa0120210:CDS 45.0%
TAGATGACCTGATGTCCATG+AGG + chr1_3:44857390-44857409 Msa0120210:intron 45.0%
TTTACTGAGCTGACACCTCA+TGG - chr1_3:44857408-44857427 None:intergenic 45.0%
GGTTCAAATCTCCTCGAGAA+CGG + chr1_3:44857462-44857481 Msa0120210:intron 45.0%
! CCATTTTACAACCGTTCTCG+AGG - chr1_3:44857476-44857495 None:intergenic 45.0%
CCTCGAGAACGGTTGTAAAA+TGG + chr1_3:44857473-44857492 Msa0120210:intron 45.0%
GGCCTACCTCATATCCTAAA+TGG + chr1_3:44857691-44857710 Msa0120210:CDS 45.0%
TTGAACCTTCATGTTAGGCC+TGG + chr1_3:44857715-44857734 Msa0120210:CDS 45.0%
! CGGCTTTATGACCCTATATC+TGG + chr1_3:44857802-44857821 Msa0120210:CDS 45.0%
AGTTTGGCAACTCCCATAAC+TGG + chr1_3:44858182-44858201 Msa0120210:intron 45.0%
! TCTAGCTTAAGGGGAGAGAA+AGG + chr1_3:44858380-44858399 Msa0120210:intron 45.0%
! GGTACAGTTGCTGAAAGCAT+TGG + chr1_3:44858639-44858658 Msa0120210:CDS 45.0%
TGAGCCTCTTGGTCCAATAT+TGG - chr1_3:44858769-44858788 None:intergenic 45.0%
CCACTTAAAGTTGAGCCTCT+TGG - chr1_3:44858780-44858799 None:intergenic 45.0%
CCAAGAGGCTCAACTTTAAG+TGG + chr1_3:44858777-44858796 Msa0120210:CDS 45.0%
AGAGGCTCAACTTTAAGTGG+AGG + chr1_3:44858780-44858799 Msa0120210:CDS 45.0%
CGTTTCTCAAACTTACAGGC+TGG + chr1_3:44859024-44859043 Msa0120210:intron 45.0%
! TTACAGGCTGGCTATTGCAA+GGG + chr1_3:44859036-44859055 Msa0120210:intron 45.0%
GTTGTTAGTGAGACAAGCTG+TGG + chr1_3:44859126-44859145 Msa0120210:CDS 45.0%
! ACAAGCTGTGGAGCGTTTAA+TGG + chr1_3:44859138-44859157 Msa0120210:CDS 45.0%
GAAGCTTCACAGGGAAGAAA+AGG - chr1_3:44859395-44859414 None:intergenic 45.0%
TCGCTTGGAAACCGTTATGA+TGG + chr1_3:44859455-44859474 Msa0120210:CDS 45.0%
TCTCTTTATGTGTGCGCATG+TGG + chr1_3:44859673-44859692 Msa0120210:three_prime_UTR 45.0%
GCAGATGCATAACGAATCAC+GGG - chr1_3:44859782-44859801 None:intergenic 45.0%
CTTAAAAGGAGTCTGACCCT+TGG + chr1_3:44859873-44859892 Msa0120210:three_prime_UTR 45.0%
! ACCCTTGGCTCAATTTTCCT+TGG + chr1_3:44859888-44859907 Msa0120210:three_prime_UTR 45.0%
!! GTATATTTATATTAAATAAA+CGG - chr1_3:44857832-44857851 None:intergenic 5.0%
! TGGAGGTTTGGGTTTGGGTT+TGG - chr1_3:44854935-44854954 None:intergenic 50.0%
!! CGGGAAGTGGTGGTTGTTTT+TGG - chr1_3:44854987-44855006 None:intergenic 50.0%
!!! GGGAGGTGCTTCGGATTTTT+AGG - chr1_3:44855012-44855031 None:intergenic 50.0%
!! GTTGTTGTTGGTTCGAAGGG+AGG - chr1_3:44855029-44855048 None:intergenic 50.0%
!! TCGGCGGTTTGGTTCTTGTT+CGG + chr1_3:44855215-44855234 Msa0120210:CDS 50.0%
ATGCACAACACGCGCTTCTT+TGG + chr1_3:44855251-44855270 Msa0120210:CDS 50.0%
TGCACAACACGCGCTTCTTT+GGG + chr1_3:44855252-44855271 Msa0120210:CDS 50.0%
TTGGGAAGCTTCGTTGAACG+CGG + chr1_3:44855270-44855289 Msa0120210:CDS 50.0%
TGTTCGATCGTGTGTTGCAG+AGG + chr1_3:44855314-44855333 Msa0120210:CDS 50.0%
GTTCGATCGTGTGTTGCAGA+GGG + chr1_3:44855315-44855334 Msa0120210:CDS 50.0%
TGTCACCCTGTTACATGGCA+TGG + chr1_3:44855933-44855952 Msa0120210:intron 50.0%
!! CAGAGTCACTTGAGAGTGTC+AGG + chr1_3:44856792-44856811 Msa0120210:CDS 50.0%
! GTTTAAGAGACTGGCCCTGA+TGG + chr1_3:44856814-44856833 Msa0120210:CDS 50.0%
!! GGTTCGGTGGTGATTTCAAG+AGG + chr1_3:44856932-44856951 Msa0120210:CDS 50.0%
TCTCTCCAGGCCTAACATGA+AGG - chr1_3:44857723-44857742 None:intergenic 50.0%
! TTGCTATTGTTGGCCCGTCT+GGG + chr1_3:44857746-44857765 Msa0120210:CDS 50.0%
!! TTGTTTTTCCTCCCCCAGAC+GGG - chr1_3:44857762-44857781 None:intergenic 50.0%
!!! GTTGTTTTTCCTCCCCCAGA+CGG - chr1_3:44857763-44857782 None:intergenic 50.0%
TAAGTGGAGGCCAGAAGCAA+AGG + chr1_3:44858793-44858812 Msa0120210:CDS 50.0%
! CTTACAGGCTGGCTATTGCA+AGG + chr1_3:44859035-44859054 Msa0120210:intron 50.0%
GCTTGTGATCTCTCATCGCT+TGG + chr1_3:44859440-44859459 Msa0120210:CDS 50.0%
!! TGGTTCGAAGGGAGGTGCTT+CGG - chr1_3:44855021-44855040 None:intergenic 55.0%
CAGAGCCAACCGTAGAGGAT+TGG - chr1_3:44855097-44855116 None:intergenic 55.0%
CGGCGGAGAATTTGGAGAGA+AGG - chr1_3:44855150-44855169 None:intergenic 55.0%
AAGCGCGTGTTGTGCATACG+TGG - chr1_3:44855248-44855267 None:intergenic 55.0%
! GTAACGACGCCGTTTCGAGT+GGG + chr1_3:44855356-44855375 Msa0120210:CDS 55.0%
! TAACGACGCCGTTTCGAGTG+GGG + chr1_3:44855357-44855376 Msa0120210:CDS 55.0%
ACTTTGTGGTGTGAGGGGCA+TGG + chr1_3:44856026-44856045 Msa0120210:intron 55.0%
! CTTTGTGGTGTGAGGGGCAT+GGG + chr1_3:44856027-44856046 Msa0120210:intron 55.0%
CACCGAACCTGCGCAAAGTA+TGG - chr1_3:44856921-44856940 None:intergenic 55.0%
CATACTTTGCGCAGGTTCGG+TGG + chr1_3:44856919-44856938 Msa0120210:CDS 55.0%
GCTGACACCTCATGGACATC+AGG - chr1_3:44857400-44857419 None:intergenic 55.0%
! GTTGCTATTGTTGGCCCGTC+TGG + chr1_3:44857745-44857764 Msa0120210:CDS 55.0%
TGCTATTGTTGGCCCGTCTG+GGG + chr1_3:44857747-44857766 Msa0120210:CDS 55.0%
!! GGTGGTGACGGCGGAGAATT+TGG - chr1_3:44855158-44855177 None:intergenic 60.0%
GGTTGTTGTGGCGGTGGTGA+CGG - chr1_3:44855170-44855189 None:intergenic 60.0%
GACGTCGACGGTTGTTGTGG+CGG - chr1_3:44855179-44855198 None:intergenic 60.0%
CGTGACGTCGACGGTTGTTG+TGG - chr1_3:44855182-44855201 None:intergenic 60.0%
AACAACCGTCGACGTCACGC+AGG + chr1_3:44855183-44855202 Msa0120210:CDS 60.0%
ACAACCGTCGACGTCACGCA+GGG + chr1_3:44855184-44855203 Msa0120210:CDS 60.0%
GAATCCCTGCGTGACGTCGA+CGG - chr1_3:44855191-44855210 None:intergenic 60.0%
GGTAACGACGCCGTTTCGAG+TGG + chr1_3:44855355-44855374 Msa0120210:CDS 60.0%
GCTATTGTTGGCCCGTCTGG+GGG + chr1_3:44857748-44857767 Msa0120210:CDS 60.0%
GGACGAGGCAACTTCTGCGT+TGG + chr1_3:44859090-44859109 Msa0120210:CDS 60.0%
CGCTGCAGAGCCAACCGTAG+AGG - chr1_3:44855102-44855121 None:intergenic 65.0%
!! TGTTGTGGCGGTGGTGACGG+CGG - chr1_3:44855167-44855186 None:intergenic 65.0%
GTCGACGGTTGTTGTGGCGG+TGG - chr1_3:44855176-44855195 None:intergenic 65.0%
GTCACGCAGGGATTCGCGCT+CGG + chr1_3:44855196-44855215 Msa0120210:CDS 65.0%
ATTGTTGGCCCGTCTGGGGG+AGG + chr1_3:44857751-44857770 Msa0120210:CDS 65.0%
ACGCAGGGATTCGCGCTCGG+CGG + chr1_3:44855199-44855218 Msa0120210:CDS 70.0%
GGGATTCGCGCTCGGCGGTT+TGG + chr1_3:44855204-44855223 Msa0120210:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44854778 44859927 44854778 ID=Msa0120210;Name=Msa0120210
chr1_3 mRNA 44854778 44859927 44854778 ID=Msa0120210-mRNA-1;Parent=Msa0120210;Name=Msa0120210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=115|1|1|1|1|0.9|10|343|621
chr1_3 exon 44854778 44855444 44854778 ID=Msa0120210-mRNA-1:exon:13399;Parent=Msa0120210-mRNA-1
chr1_3 exon 44856348 44856434 44856348 ID=Msa0120210-mRNA-1:exon:13400;Parent=Msa0120210-mRNA-1
chr1_3 exon 44856527 44856634 44856527 ID=Msa0120210-mRNA-1:exon:13401;Parent=Msa0120210-mRNA-1
chr1_3 exon 44856755 44857021 44856755 ID=Msa0120210-mRNA-1:exon:13402;Parent=Msa0120210-mRNA-1
chr1_3 exon 44857093 44857176 44857093 ID=Msa0120210-mRNA-1:exon:13403;Parent=Msa0120210-mRNA-1
chr1_3 exon 44857607 44857823 44857607 ID=Msa0120210-mRNA-1:exon:13404;Parent=Msa0120210-mRNA-1
chr1_3 exon 44857995 44858080 44857995 ID=Msa0120210-mRNA-1:exon:13405;Parent=Msa0120210-mRNA-1
chr1_3 exon 44858627 44858814 44858627 ID=Msa0120210-mRNA-1:exon:13406;Parent=Msa0120210-mRNA-1
chr1_3 exon 44859042 44859171 44859042 ID=Msa0120210-mRNA-1:exon:13407;Parent=Msa0120210-mRNA-1
chr1_3 exon 44859438 44859927 44859438 ID=Msa0120210-mRNA-1:exon:13408;Parent=Msa0120210-mRNA-1
chr1_3 five_prime_UTR 44854778 44854892 44854778 ID=Msa0120210-mRNA-1:five_prime_utr;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44854893 44855444 44854893 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44856348 44856434 44856348 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44856527 44856634 44856527 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44856755 44857021 44856755 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44857093 44857176 44857093 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44857607 44857823 44857607 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44857995 44858080 44857995 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44858627 44858814 44858627 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44859042 44859171 44859042 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 CDS 44859438 44859584 44859438 ID=Msa0120210-mRNA-1:cds;Parent=Msa0120210-mRNA-1
chr1_3 three_prime_UTR 44859585 44859927 44859585 ID=Msa0120210-mRNA-1:three_prime_utr;Parent=Msa0120210-mRNA-1
Gene Sequence

>Msa0120210

ATGCCAATCTCATGTTCACTCTCATCATCATTCATTCTTCCAAACCCAAACCCAAACCTCCATCCAATCCAATTCCAAACCAAATTCCGAACCAAAAACAACCACCACTTCCCGAACCTAAAAATCCGAAGCACCTCCCTTCGAACCAACAACAACAACACAATCCAATTCCTAAAACCATACCTAACCTCCCAACAAAAACCAATCCTCTACGGTTGGCTCTGCAGCGCAATCTCCGTCTACTCCCTTTCCAACCTTCTCTCCAAATTCTCCGCCGTCACCACCGCCACAACAACCGTCGACGTCACGCAGGGATTCGCGCTCGGCGGTTTGGTTCTTGTTCGGTTGATTGCCACGTATGCACAACACGCGCTTCTTTGGGAAGCTTCGTTGAACGCGGTTTATGAGGTTCGTGTTCATGTGTTCGATCGTGTGTTGCAGAGGGAACTTGCGTTTTTTGAAGGTAACGACGCCGTTTCGAGTGGGGATATTGCTTATCGTATTACTGCTGAAGCTTCTGATCTTGCCGCTACCTTATACGCTCTTCTTAACACCATAGTACCAAGTTCTCTGCAATTTTCTGCAATGATAATGCATATGTTGGCTATAAGTCCTGAACTTTCTTTGATATCAGCTATGGTTATTCCTTGTATGGTTCTAGTTGTTACCTTTCTTGGTCAAGAACTTCGCAAAATATCTAAGAAGGCACATATTAGCATTGCTGCTCTCTCAGCTTATCTGAATGAGATGCTGCCCGCGTATCTCTTTGTGAAAGCGAACAACGCAGAGTCACTTGAGAGTGTCAGGTTTAAGAGACTGGCCCTGATGGACTTTTCTGCAATGCTGAACAAAAAAAGGATGAAAGCAGTAATTCCCCAGGTTATTCAGGCTATTTATTTTGGAGTTCTTTCCATACTTTGCGCAGGTTCGGTGGTGATTTCAAGAGGTTCATTTGATCGCTGTAGCTTGGTTTCATTTGTGACGTCATTGCTTTTCTTAATTGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGAGAAGGAGAGCCAGCTATTGAACGCTTGTTTGCTATGACCAGGTTCAAAAATAAGGTAGTTGAGAAACCAGATGCTGTTGATTTGGACTATGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTAAGTACAATGATGGCCTACCTCATATCCTAAATGGTTTGAACCTTCATGTTAGGCCTGGAGAGATAGTTGCTATTGTTGGCCCGTCTGGGGGAGGAAAAACAACACTTGCAAAACTGTTGCTTCGGCTTTATGACCCTATATCTGGTTCTATACTGATTGATAACGAAAACATCCAGAACATTCGTTTGCAGAGTTTAAGAAGACATGTTGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAGCATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAAAGTGAAGCATGTAGCTCAAACTGCTTATGCAGACGAGTTTATTAGAAAACTTCCAGAAGGATACAATACCAATATTGGACCAAGAGGCTCAACTTTAAGTGGAGGCCAGAAGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTGATTCTGGACGAGGCAACTTCTGCGTTGGATAGTAAATCTGAGTTGTTAGTGAGACAAGCTGTGGAGCGTTTAATGGAAAATCGCACGGTGCTTGTGATCTCTCATCGCTTGGAAACCGTTATGATGGCTAAAAGAATATTCCTCTTGGATAATGGAAAGCTTGAAGAGCTGCCTCGTTCTACTATGTTGAATGGTCACATGGATTCATTGCTATCTTCTGGTCATATTGTTTGA
Protein sequence

>Msa0120210

MPISCSLSSSFILPNPNPNLHPIQFQTKFRTKNNHHFPNLKIRSTSLRTNNNNTIQFLKPYLTSQQKPILYGWLCSAISVYSLSNLLSKFSAVTTATTTVDVTQGFALGGLVLVRLIATYAQHALLWEASLNAVYEVRVHVFDRVLQRELAFFEGNDAVSSGDIAYRITAEASDLAATLYALLNTIVPSSLQFSAMIMHMLAISPELSLISAMVIPCMVLVVTFLGQELRKISKKAHISIAALSAYLNEMLPAYLFVKANNAESLESVRFKRLALMDFSAMLNKKRMKAVIPQVIQAIYFGVLSILCAGSVVISRGSFDRCSLVSFVTSLLFLIEPIQDVGKAYNEWREGEPAIERLFAMTRFKNKVVEKPDAVDLDYVTGDLKFCDVSFKYNDGLPHILNGLNLHVRPGEIVAIVGPSGGGKTTLAKLLLRLYDPISGSILIDNENIQNIRLQSLRRHVGVVSQDITLFSGTVAESIGYRDLTTKIDMEKVKHVAQTAYADEFIRKLPEGYNTNIGPRGSTLSGGQKQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNGKLEELPRSTMLNGHMDSLLSSGHIV*