AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1351560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351560 MtrunA17_Chr4g0074171 99.194 496 4 0 1 496 1 496 0.0 1013
Msa1351560 MtrunA17_Chr1g0149961 90.121 496 49 0 1 496 1 496 0.0 941
Msa1351560 MtrunA17_Chr2g0310091 31.130 469 306 7 22 482 68 527 3.09e-71 236
Msa1351560 MtrunA17_Chr3g0118081 34.820 471 280 10 17 469 39 500 9.63e-62 211
Msa1351560 MtrunA17_Chr3g0118121 33.898 472 283 11 17 469 9 470 1.96e-60 206
Msa1351560 MtrunA17_Chr8g0365221 31.352 488 307 10 21 493 66 540 2.41e-60 207
Msa1351560 MtrunA17_Chr8g0390631 28.958 480 321 9 17 485 15 485 1.83e-56 195
Msa1351560 MtrunA17_Chr4g0059521 31.838 468 298 9 17 469 9 470 1.61e-55 193
Msa1351560 MtrunA17_Chr8g0390651 27.835 485 320 8 17 485 24 494 6.36e-55 191
Msa1351560 MtrunA17_Chr3g0117861 29.508 488 316 11 21 493 67 541 1.36e-52 186
Msa1351560 MtrunA17_Chr4g0059221 28.571 497 317 10 17 493 65 543 1.86e-52 186
Msa1351560 MtrunA17_Chr6g0485311 29.363 487 321 10 17 489 21 498 3.22e-52 184
Msa1351560 MtrunA17_Chr6g0485301 28.689 488 312 10 17 485 23 493 1.14e-51 182
Msa1351560 MtrunA17_Chr2g0294411 29.314 481 302 13 29 485 62 528 3.20e-47 172
Msa1351560 MtrunA17_Chr2g0279751 29.339 484 310 12 22 487 21 490 3.84e-46 168
Msa1351560 MtrunA17_Chr4g0049641 27.673 477 319 10 22 483 48 513 8.34e-44 162
Msa1351560 MtrunA17_Chr2g0300801 24.280 486 342 14 19 490 25 498 1.09e-30 124
Msa1351560 MtrunA17_Chr2g0328781 26.966 445 281 15 44 467 14 435 1.47e-26 112
Msa1351560 MtrunA17_Chr3g0124811 25.764 458 313 12 39 485 7 448 8.93e-26 110
Msa1351560 MtrunA17_Chr8g0384741 26.107 429 282 13 53 467 74 481 1.41e-25 110
Msa1351560 MtrunA17_Chr8g0372381 26.118 425 287 11 53 467 14 421 7.82e-23 101
Msa1351560 MtrunA17_Chr1g0159811 25.231 432 296 11 41 461 7 422 2.30e-22 100
Msa1351560 MtrunA17_Chr4g0032441 28.618 304 196 11 158 448 105 400 3.74e-16 80.9
Msa1351560 MtrunA17_Chr4g0060261 25.070 355 232 13 22 360 57 393 2.56e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351560 AT2G24270.2 89.718 496 51 0 1 496 41 536 0.0 939
Msa1351560 AT2G24270.4 89.718 496 51 0 1 496 1 496 0.0 939
Msa1351560 AT2G24270.3 89.718 496 51 0 1 496 1 496 0.0 938
Msa1351560 AT2G24270.1 89.718 496 51 0 1 496 1 496 0.0 938
Msa1351560 AT1G74920.1 34.990 483 283 12 17 477 9 482 2.73e-70 233
Msa1351560 AT1G74920.2 34.783 483 279 13 17 477 9 477 4.31e-68 227
Msa1351560 AT1G79440.1 31.130 469 306 6 22 482 59 518 2.37e-65 220
Msa1351560 AT3G48170.1 30.913 482 304 12 17 477 9 482 4.65e-61 208
Msa1351560 AT3G48000.1 30.426 493 305 11 21 493 63 537 2.93e-58 202
Msa1351560 AT1G23800.1 30.642 483 315 9 22 493 60 533 5.76e-58 201
Msa1351560 AT3G24503.1 28.778 483 325 8 17 488 21 495 6.12e-54 189
Msa1351560 AT3G66658.1 29.072 485 315 13 3 467 35 510 1.67e-46 170
Msa1351560 AT3G66658.2 28.980 490 309 14 3 467 35 510 3.96e-46 170
Msa1351560 AT2G14170.2 28.512 477 315 11 22 483 11 476 5.20e-43 159
Msa1351560 AT2G14170.3 28.692 474 314 10 22 482 120 582 2.57e-42 159
Msa1351560 AT2G14170.1 28.512 477 315 11 22 483 120 585 4.49e-42 159
Msa1351560 AT1G23800.2 30.696 316 204 6 22 330 60 367 8.17e-34 132
Msa1351560 AT1G54100.2 24.898 490 328 13 19 487 24 494 8.32e-34 134
Msa1351560 AT1G54100.1 24.898 490 328 13 19 487 24 494 8.32e-34 134
Msa1351560 AT1G44170.1 25.352 426 301 12 51 468 9 425 4.35e-25 108
Msa1351560 AT1G44170.2 25.352 426 301 12 51 468 9 425 4.35e-25 108
Msa1351560 AT1G44170.3 26.814 317 223 7 158 468 49 362 8.33e-25 107
Msa1351560 AT4G34240.4 24.362 431 289 11 53 468 65 473 9.46e-23 102
Msa1351560 AT4G34240.1 24.362 431 289 11 53 468 80 488 9.62e-23 102
Msa1351560 AT4G34240.3 26.814 317 223 6 158 468 33 346 8.07e-21 95.1
Msa1351560 AT4G36250.1 27.245 323 215 10 158 467 108 423 3.30e-20 94.0
Msa1351560 AT5G62530.1 23.714 350 235 14 19 353 56 388 1.71e-14 76.3
Msa1351560 AT4G34240.2 24.127 315 204 9 53 354 80 372 5.35e-14 73.9

Find 159 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTGAAATTCAATTTATT+TGG 0.121577 tig0012323:-53338 None:intergenic
TCCCTTCTCTCTTGTATTCT+TGG 0.177591 tig0012323:-51882 None:intergenic
CACCAAGCCTTCAATGAAAT+TGG 0.219619 tig0012323:-51827 None:intergenic
CTTGGAAGTGAGGCAATATT+TGG 0.238356 tig0012323:-49949 None:intergenic
GTTGCTGCAAACATTATAAA+AGG 0.248305 tig0012323:+51183 Msa1351560:CDS
TCTCATTTGGCCTTTGCTAT+TGG 0.249553 tig0012323:+51906 Msa1351560:CDS
CTCCCAAGAGGAAGTTAATA+AGG 0.272304 tig0012323:+49546 Msa1351560:CDS
GGTCTAATCAGCTGTGTTAC+TGG 0.308486 tig0012323:+50906 Msa1351560:CDS
TAATTTAGTTATCTTCCTTT+AGG 0.311343 tig0012323:-48202 None:intergenic
TGCTAGCAACTTTGGACTTC+AGG 0.313262 tig0012323:+52032 Msa1351560:CDS
GGGACAAACTAGAATTGTTT+TGG 0.315561 tig0012323:-48292 None:intergenic
TATTGAGGCTTTCTTGTAGT+AGG 0.325145 tig0012323:-48605 None:intergenic
ACAGAATTGATCCTAATTAC+AGG 0.326513 tig0012323:-51985 None:intergenic
GATTCCGTTACAAATGGAAT+TGG 0.329253 tig0012323:+51113 Msa1351560:CDS
GGTATAAAAGACAGTGGAAT+TGG 0.332029 tig0012323:+52974 Msa1351560:CDS
TATTTGGTCCTTTCATTTCC+CGG 0.335147 tig0012323:-49933 None:intergenic
TCTGGTTAATATAGTTGATT+TGG 0.336291 tig0012323:-48401 None:intergenic
AAGAGAGTAGGAGGAGTGTC+TGG 0.336650 tig0012323:-48419 None:intergenic
CTTTGCTATTGGATAATGTT+AGG 0.338290 tig0012323:+51917 Msa1351560:CDS
TTGCAGCTTTGTGTTCTTTG+AGG 0.338729 tig0012323:-49657 None:intergenic
ATTGCTCCTGCACTCATTGC+TGG 0.338801 tig0012323:+50341 Msa1351560:CDS
GAAGAAGGAGTAAGGATTCT+TGG 0.343223 tig0012323:+49879 Msa1351560:CDS
TCTTGGAGAGGGAAAGTTCT+TGG 0.345028 tig0012323:+49896 Msa1351560:CDS
GTTCATTGCTTTCACTTGGC+TGG 0.348410 tig0012323:+50873 Msa1351560:CDS
AGAGGAAGTTAATAAGGTTA+TGG 0.352924 tig0012323:+49552 Msa1351560:CDS
TGAAGATGCTGACCTTGATT+TGG 0.358975 tig0012323:+51161 Msa1351560:CDS
AACACAGCTGATTAGACCTT+TGG 0.359110 tig0012323:-50901 None:intergenic
CATTGTAATGCTAGCAACTT+TGG 0.359882 tig0012323:+52024 Msa1351560:CDS
ATCCAGGAGTGAACTGTATA+AGG 0.361239 tig0012323:+50964 Msa1351560:CDS
ATCCTAATTACAGGCAAAAC+TGG 0.370576 tig0012323:-51976 None:intergenic
GGAATCAGTCGCTGATAGTT+TGG 0.370635 tig0012323:+51714 Msa1351560:CDS
TCCCATGCAATTCTCATGTC+TGG 0.371621 tig0012323:-51940 None:intergenic
TGAGTGTCAATCAATATTTA+TGG 0.374398 tig0012323:-48358 None:intergenic
CATGGTTCATTGCTTTCACT+TGG 0.375400 tig0012323:+50869 Msa1351560:CDS
GACAATGATGAGACGATAGA+AGG 0.375468 tig0012323:-53394 None:intergenic
AGATTGACTGGATAGTTAAA+AGG 0.381527 tig0012323:-50305 None:intergenic
TGTCAGCTCACTATGACTTA+TGG 0.384426 tig0012323:-53142 None:intergenic
AGCCAATTTCATTGAAGGCT+TGG 0.386673 tig0012323:+51825 Msa1351560:CDS
AAATGATCTGGCCCACGAGC+TGG 0.391227 tig0012323:-52715 None:intergenic
ATTAGTGATGCAATGGAATC+AGG 0.394652 tig0012323:+52670 Msa1351560:CDS
ATGGCTAAGATCACTCCTAA+TGG 0.394955 tig0012323:-50278 None:intergenic
TTTATAAGTTTCACCTGAAA+GGG 0.396189 tig0012323:-52739 None:intergenic
TAACCTTATTAACTTCCTCT+TGG 0.406814 tig0012323:-49549 None:intergenic
TCATCAGCCAATTTCATTGA+AGG 0.421085 tig0012323:+51820 Msa1351560:CDS
GGTTGTAAGATCTGGTGATT+TGG 0.422138 tig0012323:+49842 Msa1351560:intron
TACTGCTGTTAAGGTTGTCT+TGG 0.427731 tig0012323:+51687 Msa1351560:CDS
GCTGATGATTCTGATACAAC+TGG 0.428644 tig0012323:-51805 None:intergenic
ATTGCATGGGAGGAGCCATT+TGG 0.428782 tig0012323:+51952 Msa1351560:CDS
TCAGAGGTGTACTGCTGTTA+AGG 0.430225 tig0012323:+51678 Msa1351560:CDS
TCAATGAAGGTTGTAAGATC+TGG 0.431004 tig0012323:+49834 Msa1351560:intron
AACCTTATTAACTTCCTCTT+GGG 0.435727 tig0012323:-49548 None:intergenic
AGGATATAAATTACCTGAGT+TGG 0.437333 tig0012323:-50386 None:intergenic
AGCTTCACTGGTGGAGATAC+CGG 0.437992 tig0012323:+51063 Msa1351560:intron
AGAGAGAAGGGAATCTCATT+TGG 0.440505 tig0012323:+51893 Msa1351560:CDS
AATGATCTGGCCCACGAGCT+GGG 0.441052 tig0012323:-52714 None:intergenic
TGTCATCATGTTTATGCTGT+TGG 0.446435 tig0012323:-53011 None:intergenic
ACTGGCAAAGGCTCGGAGAT+TGG 0.449931 tig0012323:+50924 Msa1351560:CDS
ATTGTCAAGCACATCGTGTT+AGG 0.453073 tig0012323:+53411 Msa1351560:three_prime_UTR
GCCAAGCCCTTCTTATACCA+TGG 0.453850 tig0012323:+53060 Msa1351560:CDS
TGGCTAAGATCACTCCTAAT+GGG 0.455898 tig0012323:-50277 None:intergenic
CGGCATTGCAATTTCAAAGA+AGG 0.458206 tig0012323:+51083 Msa1351560:CDS
ACACAGCTGATTAGACCTTT+GGG 0.458219 tig0012323:-50900 None:intergenic
ATAATTAACGCTGGATCACT+TGG 0.461108 tig0012323:+48264 Msa1351560:five_prime_UTR
CTTCTTTGAAATTGCAATGC+CGG 0.461936 tig0012323:-51082 None:intergenic
ATTGAGGCTTTCTTGTAGTA+GGG 0.466187 tig0012323:-48604 None:intergenic
TTACCTTGAACTTTGTATTG+AGG 0.467120 tig0012323:-48620 None:intergenic
ATTCCGTTACAAATGGAATT+GGG 0.467485 tig0012323:+51114 Msa1351560:CDS
ACCTGAAAGGGAAAATGATC+TGG 0.469238 tig0012323:-52727 None:intergenic
AAGCCTCAATACAAAGTTCA+AGG 0.469357 tig0012323:+48617 Msa1351560:CDS
AATATTATGCTGATGGAGAA+TGG 0.471141 tig0012323:+48543 Msa1351560:CDS
GTTTCTTACTGTGCTGAAGA+AGG 0.471237 tig0012323:+49864 Msa1351560:CDS
AGGATCAATTCTGTTGAAGA+AGG 0.476795 tig0012323:+51994 Msa1351560:CDS
GCACATCCTTCTCTTCCTAA+AGG 0.483634 tig0012323:+48187 Msa1351560:five_prime_UTR
ACAGGCAAAACTGGTCCAAA+TGG 0.487090 tig0012323:-51967 None:intergenic
TCACATGACAAAGCTATTTG+TGG 0.487893 tig0012323:+48318 Msa1351560:five_prime_UTR
TTTGAGACAGCAAGATTGAC+TGG 0.493697 tig0012323:-50317 None:intergenic
TACATCTCCGTCTAAAATCT+CGG 0.493728 tig0012323:-48516 None:intergenic
ATATAAATTACCTGAGTTGG+AGG 0.495354 tig0012323:-50383 None:intergenic
TCACTCCTGGATGCATTGTA+AGG 0.496013 tig0012323:-50953 None:intergenic
TATTAGCCCATGGTATAAGA+AGG 0.496914 tig0012323:-53067 None:intergenic
CAAAATCAGCACAAAAGTCA+TGG 0.497875 tig0012323:+49581 Msa1351560:CDS
TGTTAAGGTTGTCTTGGTAA+TGG 0.498386 tig0012323:+51693 Msa1351560:CDS
CACCTTATACAGTTCACTCC+TGG 0.499695 tig0012323:-50966 None:intergenic
TTGCTATCCGATAGCTTCAC+TGG 0.502581 tig0012323:+51051 Msa1351560:intron
AGCTGTTGCAGCTCTTCACA+TGG 0.503024 tig0012323:+50851 Msa1351560:CDS
GGAGTAAGGATTCTTGGAGA+GGG 0.504125 tig0012323:+49885 Msa1351560:CDS
CAAAGACCCCACTTTGGAAG+AGG 0.506615 tig0012323:+49605 Msa1351560:CDS
ATCAGCTGTGTTACTGGCAA+AGG 0.512241 tig0012323:+50912 Msa1351560:CDS
AGAGAGAAGAAGAGAGTAGG+AGG 0.519126 tig0012323:-48428 None:intergenic
TGTGCTCAAGCCTCCAACTC+AGG 0.519656 tig0012323:+50373 Msa1351560:CDS
AGGAGTAAGGATTCTTGGAG+AGG 0.519697 tig0012323:+49884 Msa1351560:CDS
AATAGCTTTGTCATGTGACT+AGG 0.522732 tig0012323:-48313 None:intergenic
AGGCATGATTCCGTTACAAA+TGG 0.524495 tig0012323:+51107 Msa1351560:CDS
GAATGGAAGAAATCTACCTC+TGG 0.525185 tig0012323:+48560 Msa1351560:CDS
TATCTTCCTTTAGGAAGAGA+AGG 0.527529 tig0012323:-48193 None:intergenic
GTGATATCACAGTCATCCTC+AGG 0.527858 tig0012323:-51781 None:intergenic
CCAAGCCCTTCTTATACCAT+GGG 0.527974 tig0012323:+53061 Msa1351560:CDS
CCTCCCAATTCCATTTGTAA+CGG 0.528245 tig0012323:-51117 None:intergenic
GCTTTGCTATTTCTTTGACT+AGG 0.532020 tig0012323:-49690 None:intergenic
AGACAGTGGAATTGGATCAC+AGG 0.536723 tig0012323:+52982 Msa1351560:CDS
GAATTTCCAGCAATGAGTGC+AGG 0.537751 tig0012323:-50347 None:intergenic
ACTGTGCTGAAGAAGGAGTA+AGG 0.539338 tig0012323:+49871 Msa1351560:CDS
ATAAATTCTGCCCCAGCTCG+TGG 0.539359 tig0012323:+52703 Msa1351560:CDS
TGCCAAGAATACAAGAGAGA+AGG 0.540006 tig0012323:+51880 Msa1351560:CDS
GCCAAGAATACAAGAGAGAA+GGG 0.542461 tig0012323:+51881 Msa1351560:CDS
GTGAATGATGCTAAACAGAA+AGG 0.552242 tig0012323:+51847 Msa1351560:CDS
ATTGCAATTTCAAAGAAGGC+AGG 0.554951 tig0012323:+51087 Msa1351560:CDS
GTATACAAATATTATGCTGA+TGG 0.557846 tig0012323:+48536 Msa1351560:CDS
CTGTGTTACTGGCAAAGGCT+CGG 0.559016 tig0012323:+50917 Msa1351560:CDS
TGCAGAGAGAAGAAGAGAGT+AGG 0.561873 tig0012323:-48431 None:intergenic
CAAATATTGCCTCACTTCCA+AGG 0.562000 tig0012323:+49950 Msa1351560:CDS
GCTGCAAACATTATAAAAGG+AGG 0.564563 tig0012323:+51186 Msa1351560:CDS
TGAAATAGACCTTGGAAGTG+AGG 0.565780 tig0012323:-49959 None:intergenic
ACAATGATGAGACGATAGAA+GGG 0.566427 tig0012323:-53393 None:intergenic
GACAGTGGAATTGGATCACA+GGG 0.567866 tig0012323:+52983 Msa1351560:CDS
TGTTTGCAGCAACCAAATCA+AGG 0.571187 tig0012323:-51173 None:intergenic
ATGATCTGGCCCACGAGCTG+GGG 0.571612 tig0012323:-52713 None:intergenic
GTTCAGCCCTCTTCCAAAGT+GGG 0.573357 tig0012323:-49612 None:intergenic
GACTTCCTTACAATGCATCC+AGG 0.575105 tig0012323:+50948 Msa1351560:CDS
ATAGCTTTGTCATGTGACTA+GGG 0.575690 tig0012323:-48312 None:intergenic
ATTAGCCCATGGTATAAGAA+GGG 0.576461 tig0012323:-53066 None:intergenic
CATGGGCAAAGACCCCACTT+TGG 0.577477 tig0012323:+49599 Msa1351560:CDS
GGCCAGACATGAGAATTGCA+TGG 0.578690 tig0012323:+51938 Msa1351560:CDS
CTGATGATTCTGATACAACT+GGG 0.582007 tig0012323:-51804 None:intergenic
GGTTGAGAAAGTGAAGGCTA+AGG 0.585982 tig0012323:+51735 Msa1351560:CDS
AAAATCAGCACAAAAGTCAT+GGG 0.588574 tig0012323:+49582 Msa1351560:CDS
AAAGACCCCACTTTGGAAGA+GGG 0.592379 tig0012323:+49606 Msa1351560:CDS
AAGGTGGCAAAACTAAGTGT+TGG 0.592797 tig0012323:+51754 Msa1351560:CDS
TGGATAGTTAAAAGGCGGAA+TGG 0.594322 tig0012323:-50297 None:intergenic
CCCATGGTATAAGAAGGGCT+TGG 0.597949 tig0012323:-53061 None:intergenic
TAAATTCTGCCCCAGCTCGT+GGG 0.599729 tig0012323:+52704 Msa1351560:CDS
AGTTCAGCCCTCTTCCAAAG+TGG 0.601662 tig0012323:-49613 None:intergenic
GCCAGACATGAGAATTGCAT+GGG 0.604840 tig0012323:+51939 Msa1351560:CDS
AATGATGATTAGTGATGCAA+TGG 0.607091 tig0012323:+52663 Msa1351560:CDS
AGTTGCTAGCATTACAATGG+TGG 0.608323 tig0012323:-52020 None:intergenic
TGAGATAAGATAATTAACGC+TGG 0.609290 tig0012323:+48255 Msa1351560:five_prime_UTR
ATATTTATGGTGTAAAGAGA+AGG 0.610681 tig0012323:-48345 None:intergenic
AGCAAAAGATGCAGTTACAG+AGG 0.611642 tig0012323:+49714 Msa1351560:CDS
TGAGAAAGTGAAGGCTAAGG+TGG 0.619750 tig0012323:+51738 Msa1351560:CDS
AGACATGAGAATTGCATGGG+AGG 0.621616 tig0012323:+51942 Msa1351560:CDS
TTCAGCCCTCTTCCAAAGTG+GGG 0.625906 tig0012323:-49611 None:intergenic
TCAGAGATAAATAACAAGTG+TGG 0.627362 tig0012323:+53192 Msa1351560:three_prime_UTR
CCATGCAGCTTGCTCCCAAG+AGG 0.628360 tig0012323:+49534 Msa1351560:intron
AATATGCTATTATTAGCCCA+TGG 0.629261 tig0012323:-53077 None:intergenic
CCGTTACAAATGGAATTGGG+AGG 0.629301 tig0012323:+51117 Msa1351560:CDS
TAGTTTGGTTGAGAAAGTGA+AGG 0.632684 tig0012323:+51729 Msa1351560:CDS
AGGGCTTGGCAAGTTTATCA+CGG 0.633923 tig0012323:-53047 None:intergenic
CAAAGTTGCTAGCATTACAA+TGG 0.639762 tig0012323:-52023 None:intergenic
ACTAAGTGTTGGACCACCTG+AGG 0.649624 tig0012323:+51765 Msa1351560:CDS
GAGGGCTGAACTTCTTCACA+AGG 0.649776 tig0012323:+49624 Msa1351560:CDS
CTATCCGATAGCTTCACTGG+TGG 0.653530 tig0012323:+51054 Msa1351560:intron
CAGCTCACTATGACTTATGG+AGG 0.659439 tig0012323:-53139 None:intergenic
AGACACATGAAGATGCTATG+TGG 0.662329 tig0012323:-53231 None:intergenic
TCAGGGATGTGTGTTCACAA+AGG 0.663222 tig0012323:+52627 Msa1351560:intron
TTGACTGGATAGTTAAAAGG+CGG 0.663722 tig0012323:-50302 None:intergenic
TGACAGGGTATAAAAGACAG+TGG 0.671884 tig0012323:+52968 Msa1351560:intron
CTAACATTATCCAATAGCAA+AGG 0.679429 tig0012323:-51916 None:intergenic
ATATCACAGTCATCCTCAGG+TGG 0.693050 tig0012323:-51778 None:intergenic
TGATGATTCTGATACAACTG+GGG 0.745364 tig0012323:-51803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTTTTTCAATGA+AGG + tig0012323:49821-49840 Msa1351560:intron 10.0%
!!! TGAAATCATTTTTTTTTTTA+GGG + tig0012323:52414-52433 Msa1351560:intron 10.0%
!! TGAAAAAAAATTCAAAAGAT+AGG + tig0012323:48225-48244 Msa1351560:five_prime_UTR 15.0%
!! GAAAAAAAATTCAAAAGATA+GGG + tig0012323:48226-48245 Msa1351560:five_prime_UTR 15.0%
!! TACAAAGTAACTAAAATAAA+AGG - tig0012323:48672-48691 None:intergenic 15.0%
!! ACTTTATAAAGTCAATAAAT+TGG + tig0012323:50067-50086 Msa1351560:intron 15.0%
!!! TTTATTTTGGTTTCTTTTAA+CGG - tig0012323:50757-50776 None:intergenic 15.0%
!! ATTTACTTCATAAATATAAC+CGG + tig0012323:51286-51305 Msa1351560:intron 15.0%
!!! TTTAATTTTTTCATGAAAAG+TGG + tig0012323:51655-51674 Msa1351560:intron 15.0%
!! AAAAAAAAAAATGATTTCAG+AGG - tig0012323:52413-52432 None:intergenic 15.0%
!!! CTGAAATCATTTTTTTTTTT+AGG + tig0012323:52413-52432 Msa1351560:intron 15.0%
!! CATATCATTAAATTAATGTT+TGG - tig0012323:52478-52497 None:intergenic 15.0%
!!! TTTTGTTGTTTTTGTAATTT+TGG - tig0012323:52904-52923 None:intergenic 15.0%
!!! GATTTGAAATTCAATTTATT+TGG - tig0012323:53341-53360 None:intergenic 15.0%
!! TAATTTAGTTATCTTCCTTT+AGG - tig0012323:48205-48224 None:intergenic 20.0%
!!! TTTGAGTATATTTTCTAACA+TGG + tig0012323:48475-48494 Msa1351560:exon 20.0%
!!! GACTTCAAAATTTTATAACA+AGG + tig0012323:48786-48805 Msa1351560:intron 20.0%
!! GTAAATTTATTTAACATGCT+TGG - tig0012323:49150-49169 None:intergenic 20.0%
!! CATGTTAAATAAATTTACCT+CGG + tig0012323:49152-49171 Msa1351560:intron 20.0%
!! ATTGTAAAGAATCATCAAAA+CGG - tig0012323:49270-49289 None:intergenic 20.0%
!! ACTTGTAAATTAAATGATCA+TGG + tig0012323:50173-50192 Msa1351560:intron 20.0%
!!! TCTTATTGTTTTATTTTGCT+TGG + tig0012323:50213-50232 Msa1351560:intron 20.0%
!!! AACTCAAACTATTTTCATAT+AGG + tig0012323:50572-50591 Msa1351560:intron 20.0%
!! CTTATTAAGAAAACAGTTTA+TGG - tig0012323:50598-50617 None:intergenic 20.0%
!!! TTCTGACAAACTTTTTATTT+TGG - tig0012323:50770-50789 None:intergenic 20.0%
!! ATATTTATGAAGTAAATGCA+TGG - tig0012323:51283-51302 None:intergenic 20.0%
!! TTAGCAGTTATATGAATAAA+CGG - tig0012323:51503-51522 None:intergenic 20.0%
!!! TACTAAAATGAGTTTAGTTT+TGG + tig0012323:52123-52142 Msa1351560:intron 20.0%
!!! TTAATGTTTGGTTCTAATTT+CGG - tig0012323:52466-52485 None:intergenic 20.0%
!! ATTAGAATTTAATTCATGCA+CGG - tig0012323:52539-52558 None:intergenic 20.0%
!! AATACCAAATATACACAAAA+TGG - tig0012323:52771-52790 None:intergenic 20.0%
!! TTTGTGTATATTTGGTATTA+CGG + tig0012323:52772-52791 Msa1351560:intron 20.0%
!! ACTTGAAAACATTTTCTGTA+TGG + tig0012323:48151-48170 Msa1351560:five_prime_UTR 25.0%
! ATATTTATGGTGTAAAGAGA+AGG - tig0012323:48348-48367 None:intergenic 25.0%
! TGAGTGTCAATCAATATTTA+TGG - tig0012323:48361-48380 None:intergenic 25.0%
! TCTGGTTAATATAGTTGATT+TGG - tig0012323:48404-48423 None:intergenic 25.0%
! GTATACAAATATTATGCTGA+TGG + tig0012323:48536-48555 Msa1351560:CDS 25.0%
! ACTTGAAAACAAAAGAGAAA+GGG - tig0012323:48649-48668 None:intergenic 25.0%
! AGATACTGTTAAAAACGTTT+AGG + tig0012323:48862-48881 Msa1351560:intron 25.0%
! GATACTGTTAAAAACGTTTA+GGG + tig0012323:48863-48882 Msa1351560:intron 25.0%
!! AATCTCTGAATTTTACGAAT+TGG + tig0012323:48936-48955 Msa1351560:intron 25.0%
! TAACAACATAAGTTAATGGA+TGG - tig0012323:49003-49022 None:intergenic 25.0%
! AGAAATGAAGTTATAAGGAA+TGG + tig0012323:49386-49405 Msa1351560:intron 25.0%
! AGAAAACAACTATGTTCAAT+AGG + tig0012323:49481-49500 Msa1351560:intron 25.0%
! CGAGAAATTATGAAAATGAT+TGG + tig0012323:49796-49815 Msa1351560:intron 25.0%
!!! TACTTCAATCATTTTAGAAC+TGG + tig0012323:50025-50044 Msa1351560:intron 25.0%
!! TTTAGAACTGGAAAATCAAT+AGG + tig0012323:50037-50056 Msa1351560:intron 25.0%
!! TTAAGCTTTTTATCGAAACA+GGG - tig0012323:50480-50499 None:intergenic 25.0%
!! ATTAAGCTTTTTATCGAAAC+AGG - tig0012323:50481-50500 None:intergenic 25.0%
! TCAAATAAATCAATCCAAAC+AGG + tig0012323:50697-50716 Msa1351560:intron 25.0%
! AATACATTCATGAATTGTAG+TGG - tig0012323:51314-51333 None:intergenic 25.0%
! ACTAACAAAAGATACATTTG+AGG + tig0012323:51423-51442 Msa1351560:intron 25.0%
!!! TATGAATAAACGGTCATTTT+GGG - tig0012323:51493-51512 None:intergenic 25.0%
!! ATATGAATAAACGGTCATTT+TGG - tig0012323:51494-51513 None:intergenic 25.0%
! AATATAAGATGAATGTTGCA+TGG + tig0012323:51579-51598 Msa1351560:intron 25.0%
!! TTTTACTGTGTGTTTGATTA+TGG + tig0012323:52241-52260 Msa1351560:intron 25.0%
!!! AAAACTGATTTTGACATGTT+TGG - tig0012323:52387-52406 None:intergenic 25.0%
! ATTGAACTTGAAATTGTTCA+GGG + tig0012323:52610-52629 Msa1351560:intron 25.0%
! TTTATAAGTTTCACCTGAAA+GGG - tig0012323:52742-52761 None:intergenic 25.0%
!! TTTTATAAGTTTCACCTGAA+AGG - tig0012323:52743-52762 None:intergenic 25.0%
!! CAATCCATTTTGTGTATATT+TGG + tig0012323:52764-52783 Msa1351560:intron 25.0%
!! ATTTGCAAAAGCTCTAATTA+TGG + tig0012323:52827-52846 Msa1351560:intron 25.0%
!! TCAAATGTTTTATCATTGAC+AGG + tig0012323:52952-52971 Msa1351560:intron 25.0%
!! CAAATGTTTTATCATTGACA+GGG + tig0012323:52953-52972 Msa1351560:intron 25.0%
!!! AGCATATTTTTATGTATGTG+TGG + tig0012323:53092-53111 Msa1351560:three_prime_UTR 25.0%
!!! TATTCCTAACTTTTTTGACA+AGG - tig0012323:53308-53327 None:intergenic 25.0%
TGAGATAAGATAATTAACGC+TGG + tig0012323:48255-48274 Msa1351560:five_prime_UTR 30.0%
!!! ACAAACTAGAATTGTTTTGG+TGG - tig0012323:48292-48311 None:intergenic 30.0%
!! TGGTTTTCTTGTTGATTGTT+TGG - tig0012323:48384-48403 None:intergenic 30.0%
AATATTATGCTGATGGAGAA+TGG + tig0012323:48543-48562 Msa1351560:CDS 30.0%
TTACCTTGAACTTTGTATTG+AGG - tig0012323:48623-48642 None:intergenic 30.0%
GACTTGAAAACAAAAGAGAA+AGG - tig0012323:48650-48669 None:intergenic 30.0%
ACTTTGTATGATTCTTCATG+TGG + tig0012323:48684-48703 Msa1351560:intron 30.0%
! TGCTTTTGTTCATCCTTTTT+AGG - tig0012323:48742-48761 None:intergenic 30.0%
AAGCAACTATGTATGTTTAC+TGG + tig0012323:48757-48776 Msa1351560:intron 30.0%
CCTCTAACAACATAAGTTAA+TGG - tig0012323:49007-49026 None:intergenic 30.0%
CCATTAACTTATGTTGTTAG+AGG + tig0012323:49004-49023 Msa1351560:intron 30.0%
! TAACGTGCAACAAAAGTTTT+TGG - tig0012323:49083-49102 None:intergenic 30.0%
TATTGATGTGAGATCTACAT+AGG + tig0012323:49217-49236 Msa1351560:intron 30.0%
ATTGATGTGAGATCTACATA+GGG + tig0012323:49218-49237 Msa1351560:intron 30.0%
!! TTGCTGATTCAAAAAACTCA+AGG + tig0012323:49303-49322 Msa1351560:intron 30.0%
! ATTTCCCTAATTGCTCTTTT+CGG + tig0012323:49361-49380 Msa1351560:intron 30.0%
AACCTTATTAACTTCCTCTT+GGG - tig0012323:49551-49570 None:intergenic 30.0%
TAACCTTATTAACTTCCTCT+TGG - tig0012323:49552-49571 None:intergenic 30.0%
AGAGGAAGTTAATAAGGTTA+TGG + tig0012323:49552-49571 Msa1351560:CDS 30.0%
AAAATCAGCACAAAAGTCAT+GGG + tig0012323:49582-49601 Msa1351560:CDS 30.0%
!! GAATAAGTTAAGTGTTGCTT+AGG + tig0012323:49763-49782 Msa1351560:intron 30.0%
ATATGTAGTGAAATAGACCT+TGG - tig0012323:49970-49989 None:intergenic 30.0%
!! ATTGATTTTCAGATCCCATT+AGG + tig0012323:50263-50282 Msa1351560:intron 30.0%
AGATTGACTGGATAGTTAAA+AGG - tig0012323:50308-50327 None:intergenic 30.0%
! ATATAAATTACCTGAGTTGG+AGG - tig0012323:50386-50405 None:intergenic 30.0%
AGGATATAAATTACCTGAGT+TGG - tig0012323:50389-50408 None:intergenic 30.0%
TCGTCAAAAACACTACATAT+GGG + tig0012323:50421-50440 Msa1351560:intron 30.0%
AAGTGGATAGTATGAGAATA+TGG - tig0012323:50449-50468 None:intergenic 30.0%
TCATACTATCCACTTTCTTA+TGG + tig0012323:50454-50473 Msa1351560:intron 30.0%
ATAAGCTGACAACAACTTAT+TGG + tig0012323:50613-50632 Msa1351560:intron 30.0%
! CATTAGCTAGAACTTTTATG+AGG - tig0012323:50728-50747 None:intergenic 30.0%
TTCTTTACTGTTCCTTCTAA+TGG + tig0012323:50805-50824 Msa1351560:intron 30.0%
ATTCCGTTACAAATGGAATT+GGG + tig0012323:51114-51133 Msa1351560:CDS 30.0%
GTTGCTGCAAACATTATAAA+AGG + tig0012323:51183-51202 Msa1351560:CDS 30.0%
! TAAAAGGAGGTTTTTCATAC+AGG + tig0012323:51199-51218 Msa1351560:CDS 30.0%
! TGTATTTTTCGTTAGTCGTT+TGG - tig0012323:51387-51406 None:intergenic 30.0%
!! GTAAGTTTTCTTAGAGTGTT+TGG - tig0012323:51450-51469 None:intergenic 30.0%
CTAACATTATCCAATAGCAA+AGG - tig0012323:51919-51938 None:intergenic 30.0%
!! CTTTGCTATTGGATAATGTT+AGG + tig0012323:51917-51936 Msa1351560:CDS 30.0%
ACAGAATTGATCCTAATTAC+AGG - tig0012323:51988-52007 None:intergenic 30.0%
AATTGATTGTTGAAGTGAGA+GGG - tig0012323:52070-52089 None:intergenic 30.0%
TAATTGATTGTTGAAGTGAG+AGG - tig0012323:52071-52090 None:intergenic 30.0%
AAACACACAGTAAAAACGTT+TGG - tig0012323:52236-52255 None:intergenic 30.0%
GGTGTTAAAAATGATTTCAG+AGG - tig0012323:52442-52461 None:intergenic 30.0%
CATTGAACTTGAAATTGTTC+AGG + tig0012323:52609-52628 Msa1351560:intron 30.0%
AATGATGATTAGTGATGCAA+TGG + tig0012323:52663-52682 Msa1351560:CDS 30.0%
CATGTGCATATTTGATGTTA+CGG - tig0012323:52861-52880 None:intergenic 30.0%
AATATGCTATTATTAGCCCA+TGG - tig0012323:53080-53099 None:intergenic 30.0%
TCAGAGATAAATAACAAGTG+TGG + tig0012323:53192-53211 Msa1351560:three_prime_UTR 30.0%
TGTACCTTGTCAAAAAAGTT+AGG + tig0012323:53301-53320 Msa1351560:three_prime_UTR 30.0%
! TATCTTCCTTTAGGAAGAGA+AGG - tig0012323:48196-48215 None:intergenic 35.0%
ATAATTAACGCTGGATCACT+TGG + tig0012323:48264-48283 Msa1351560:five_prime_UTR 35.0%
! GGGACAAACTAGAATTGTTT+TGG - tig0012323:48295-48314 None:intergenic 35.0%
!! ATAGCTTTGTCATGTGACTA+GGG - tig0012323:48315-48334 None:intergenic 35.0%
!! AATAGCTTTGTCATGTGACT+AGG - tig0012323:48316-48335 None:intergenic 35.0%
TCACATGACAAAGCTATTTG+TGG + tig0012323:48318-48337 Msa1351560:five_prime_UTR 35.0%
! TACATCTCCGTCTAAAATCT+CGG - tig0012323:48519-48538 None:intergenic 35.0%
ATTGAGGCTTTCTTGTAGTA+GGG - tig0012323:48607-48626 None:intergenic 35.0%
TATTGAGGCTTTCTTGTAGT+AGG - tig0012323:48608-48627 None:intergenic 35.0%
AAGCCTCAATACAAAGTTCA+AGG + tig0012323:48617-48636 Msa1351560:CDS 35.0%
GATGTGATCATGTGAGAATA+TGG + tig0012323:48706-48725 Msa1351560:intron 35.0%
ACTGTTAAAAACGTTTAGGG+AGG + tig0012323:48866-48885 Msa1351560:intron 35.0%
TGTTGTTAGAGGCTATAACT+TGG + tig0012323:49015-49034 Msa1351560:intron 35.0%
!!! ACAAAAGTTTTTGGTCACGT+AGG - tig0012323:49074-49093 None:intergenic 35.0%
TTTAACATGCTTGGATCTCA+AGG - tig0012323:49141-49160 None:intergenic 35.0%
AATTGCATACGAAAATTCCG+AGG - tig0012323:49172-49191 None:intergenic 35.0%
TTGATGTGAGATCTACATAG+GGG + tig0012323:49219-49238 Msa1351560:intron 35.0%
GTCGTATAAACTGTAAGCAT+CGG - tig0012323:49339-49358 None:intergenic 35.0%
CAAAATCAGCACAAAAGTCA+TGG + tig0012323:49581-49600 Msa1351560:CDS 35.0%
!! GCTTTGCTATTTCTTTGACT+AGG - tig0012323:49693-49712 None:intergenic 35.0%
TCAATGAAGGTTGTAAGATC+TGG + tig0012323:49834-49853 Msa1351560:intron 35.0%
! CTTGGTTTCAGATAGTTTTC+CGG + tig0012323:49914-49933 Msa1351560:CDS 35.0%
! TTGGTTTCAGATAGTTTTCC+GGG + tig0012323:49915-49934 Msa1351560:CDS 35.0%
! ATAGTTTTCCGGGAAATGAA+AGG + tig0012323:49925-49944 Msa1351560:CDS 35.0%
TATTTGGTCCTTTCATTTCC+CGG - tig0012323:49936-49955 None:intergenic 35.0%
! ATGCATGTATCTCAGGATTT+TGG - tig0012323:50100-50119 None:intergenic 35.0%
!!! ATTTTGCTTGGTTGATGATG+TGG + tig0012323:50225-50244 Msa1351560:intron 35.0%
TTGACTGGATAGTTAAAAGG+CGG - tig0012323:50305-50324 None:intergenic 35.0%
TTTGACGAGTATCACAATGA+AGG - tig0012323:50409-50428 None:intergenic 35.0%
CTCGTCAAAAACACTACATA+TGG + tig0012323:50420-50439 Msa1351560:intron 35.0%
! GCTAGAACTTTTATGAGGTA+GGG - tig0012323:50723-50742 None:intergenic 35.0%
! AGCTAGAACTTTTATGAGGT+AGG - tig0012323:50724-50743 None:intergenic 35.0%
!! CTTCTTTGAAATTGCAATGC+CGG - tig0012323:51085-51104 None:intergenic 35.0%
ATTGCAATTTCAAAGAAGGC+AGG + tig0012323:51087-51106 Msa1351560:CDS 35.0%
GATTCCGTTACAAATGGAAT+TGG + tig0012323:51113-51132 Msa1351560:CDS 35.0%
GCTGCAAACATTATAAAAGG+AGG + tig0012323:51186-51205 Msa1351560:CDS 35.0%
AATTAGCACTTCTTGTGCAA+AGG + tig0012323:51237-51256 Msa1351560:intron 35.0%
! CAAGAAGCGTATGATGTAAT+TGG - tig0012323:51546-51565 None:intergenic 35.0%
! TTTTCATGAAAAGTGGTCAG+AGG + tig0012323:51662-51681 Msa1351560:intron 35.0%
TGTTAAGGTTGTCTTGGTAA+TGG + tig0012323:51693-51712 Msa1351560:CDS 35.0%
TAGTTTGGTTGAGAAAGTGA+AGG + tig0012323:51729-51748 Msa1351560:CDS 35.0%
TGATGATTCTGATACAACTG+GGG - tig0012323:51806-51825 None:intergenic 35.0%
CTGATGATTCTGATACAACT+GGG - tig0012323:51807-51826 None:intergenic 35.0%
TCATCAGCCAATTTCATTGA+AGG + tig0012323:51820-51839 Msa1351560:CDS 35.0%
GTGAATGATGCTAAACAGAA+AGG + tig0012323:51847-51866 Msa1351560:CDS 35.0%
ATCCTAATTACAGGCAAAAC+TGG - tig0012323:51979-51998 None:intergenic 35.0%
AGGATCAATTCTGTTGAAGA+AGG + tig0012323:51994-52013 Msa1351560:CDS 35.0%
CAAAGTTGCTAGCATTACAA+TGG - tig0012323:52026-52045 None:intergenic 35.0%
CATTGTAATGCTAGCAACTT+TGG + tig0012323:52024-52043 Msa1351560:CDS 35.0%
!! ATGTTTGGTTCTAATTTCGG+AGG - tig0012323:52463-52482 None:intergenic 35.0%
ATTAGTGATGCAATGGAATC+AGG + tig0012323:52670-52689 Msa1351560:CDS 35.0%
ATATTTGGTATTACGGTCGA+TGG + tig0012323:52779-52798 Msa1351560:intron 35.0%
GGTATAAAAGACAGTGGAAT+TGG + tig0012323:52974-52993 Msa1351560:CDS 35.0%
TGTCATCATGTTTATGCTGT+TGG - tig0012323:53014-53033 None:intergenic 35.0%
ATTAGCCCATGGTATAAGAA+GGG - tig0012323:53069-53088 None:intergenic 35.0%
TATTAGCCCATGGTATAAGA+AGG - tig0012323:53070-53089 None:intergenic 35.0%
ACAATGATGAGACGATAGAA+GGG - tig0012323:53396-53415 None:intergenic 35.0%
! TTTTCTAACATGGCTGCTAC+TGG + tig0012323:48485-48504 Msa1351560:exon 40.0%
GAATGGAAGAAATCTACCTC+TGG + tig0012323:48560-48579 Msa1351560:CDS 40.0%
!!! GATAGCAACACTTTTTCCAG+AGG - tig0012323:48579-48598 None:intergenic 40.0%
!! TGGACTTGCTACACCTAAAA+AGG + tig0012323:48726-48745 Msa1351560:intron 40.0%
!! CAAGGTAGAAACTCTAGAGT+TGG - tig0012323:49123-49142 None:intergenic 40.0%
TGATGTGAGATCTACATAGG+GGG + tig0012323:49220-49239 Msa1351560:intron 40.0%
CGGCGAGAAATGAAGTTATA+AGG + tig0012323:49381-49400 Msa1351560:intron 40.0%
TGCATGGAGATCATTGTTAG+AGG - tig0012323:49521-49540 None:intergenic 40.0%
CTCCCAAGAGGAAGTTAATA+AGG + tig0012323:49546-49565 Msa1351560:CDS 40.0%
! TTGCAGCTTTGTGTTCTTTG+AGG - tig0012323:49660-49679 None:intergenic 40.0%
! TCTGTAACTGCATCTTTTGC+TGG - tig0012323:49715-49734 None:intergenic 40.0%
AGCAAAAGATGCAGTTACAG+AGG + tig0012323:49714-49733 Msa1351560:CDS 40.0%
GGTTGTAAGATCTGGTGATT+TGG + tig0012323:49842-49861 Msa1351560:intron 40.0%
GTTTCTTACTGTGCTGAAGA+AGG + tig0012323:49864-49883 Msa1351560:CDS 40.0%
GAAGAAGGAGTAAGGATTCT+TGG + tig0012323:49879-49898 Msa1351560:CDS 40.0%
CTTGGAAGTGAGGCAATATT+TGG - tig0012323:49952-49971 None:intergenic 40.0%
CAAATATTGCCTCACTTCCA+AGG + tig0012323:49950-49969 Msa1351560:CDS 40.0%
TGAAATAGACCTTGGAAGTG+AGG - tig0012323:49962-49981 None:intergenic 40.0%
TCCTGAGATACATGCATTCA+AGG + tig0012323:50103-50122 Msa1351560:intron 40.0%
CCTGAGATACATGCATTCAA+GGG + tig0012323:50104-50123 Msa1351560:intron 40.0%
TGGCTAAGATCACTCCTAAT+GGG - tig0012323:50280-50299 None:intergenic 40.0%
ATGGCTAAGATCACTCCTAA+TGG - tig0012323:50281-50300 None:intergenic 40.0%
TGGATAGTTAAAAGGCGGAA+TGG - tig0012323:50300-50319 None:intergenic 40.0%
! TTTGAGACAGCAAGATTGAC+TGG - tig0012323:50320-50339 None:intergenic 40.0%
CAAGTGTTTGTGAGAGCTAA+TGG - tig0012323:50656-50675 None:intergenic 40.0%
CATGGTTCATTGCTTTCACT+TGG + tig0012323:50869-50888 Msa1351560:CDS 40.0%
ACACAGCTGATTAGACCTTT+GGG - tig0012323:50903-50922 None:intergenic 40.0%
AACACAGCTGATTAGACCTT+TGG - tig0012323:50904-50923 None:intergenic 40.0%
ATCCAGGAGTGAACTGTATA+AGG + tig0012323:50964-50983 Msa1351560:CDS 40.0%
CGGCATTGCAATTTCAAAGA+AGG + tig0012323:51083-51102 Msa1351560:CDS 40.0%
AGGCATGATTCCGTTACAAA+TGG + tig0012323:51107-51126 Msa1351560:CDS 40.0%
CCTCCCAATTCCATTTGTAA+CGG - tig0012323:51120-51139 None:intergenic 40.0%
TGAAGATGCTGACCTTGATT+TGG + tig0012323:51161-51180 Msa1351560:CDS 40.0%
TGTTTGCAGCAACCAAATCA+AGG - tig0012323:51176-51195 None:intergenic 40.0%
TTCATGAATTGTAGTGGCAC+CGG - tig0012323:51308-51327 None:intergenic 40.0%
TACTGCTGTTAAGGTTGTCT+TGG + tig0012323:51687-51706 Msa1351560:CDS 40.0%
AAGGTGGCAAAACTAAGTGT+TGG + tig0012323:51754-51773 Msa1351560:CDS 40.0%
GCTGATGATTCTGATACAAC+TGG - tig0012323:51808-51827 None:intergenic 40.0%
AGCCAATTTCATTGAAGGCT+TGG + tig0012323:51825-51844 Msa1351560:CDS 40.0%
CACCAAGCCTTCAATGAAAT+TGG - tig0012323:51830-51849 None:intergenic 40.0%
TGCCAAGAATACAAGAGAGA+AGG + tig0012323:51880-51899 Msa1351560:CDS 40.0%
GCCAAGAATACAAGAGAGAA+GGG + tig0012323:51881-51900 Msa1351560:CDS 40.0%
TCCCTTCTCTCTTGTATTCT+TGG - tig0012323:51885-51904 None:intergenic 40.0%
AGAGAGAAGGGAATCTCATT+TGG + tig0012323:51893-51912 Msa1351560:CDS 40.0%
! TCTCATTTGGCCTTTGCTAT+TGG + tig0012323:51906-51925 Msa1351560:CDS 40.0%
! GACCAGTTTTGCCTGTAATT+AGG + tig0012323:51974-51993 Msa1351560:CDS 40.0%
AGTTGCTAGCATTACAATGG+TGG - tig0012323:52023-52042 None:intergenic 40.0%
ACCTGAAAGGGAAAATGATC+TGG - tig0012323:52730-52749 None:intergenic 40.0%
TGACAGGGTATAAAAGACAG+TGG + tig0012323:52968-52987 Msa1351560:intron 40.0%
TGTCAGCTCACTATGACTTA+TGG - tig0012323:53145-53164 None:intergenic 40.0%
AGACACATGAAGATGCTATG+TGG - tig0012323:53234-53253 None:intergenic 40.0%
GACAATGATGAGACGATAGA+AGG - tig0012323:53397-53416 None:intergenic 40.0%
ATTGTCAAGCACATCGTGTT+AGG + tig0012323:53411-53430 Msa1351560:three_prime_UTR 40.0%
GCACATCCTTCTCTTCCTAA+AGG + tig0012323:48187-48206 Msa1351560:five_prime_UTR 45.0%
AGAGAGAAGAAGAGAGTAGG+AGG - tig0012323:48431-48450 None:intergenic 45.0%
TGCAGAGAGAAGAAGAGAGT+AGG - tig0012323:48434-48453 None:intergenic 45.0%
! GTGCTTGCCGAGATTTTAGA+CGG + tig0012323:48509-48528 Msa1351560:CDS 45.0%
GGAGGAGTGAATTTGCAGAT+TGG + tig0012323:48884-48903 Msa1351560:intron 45.0%
GTCACGTAGGATTCACTTGT+AGG - tig0012323:49061-49080 None:intergenic 45.0%
CTCGCCGAAAAGAGCAATTA+GGG - tig0012323:49368-49387 None:intergenic 45.0%
TCTCGCCGAAAAGAGCAATT+AGG - tig0012323:49369-49388 None:intergenic 45.0%
! AAAGACCCCACTTTGGAAGA+GGG + tig0012323:49606-49625 Msa1351560:CDS 45.0%
ACTGTGCTGAAGAAGGAGTA+AGG + tig0012323:49871-49890 Msa1351560:CDS 45.0%
AGGAGTAAGGATTCTTGGAG+AGG + tig0012323:49884-49903 Msa1351560:CDS 45.0%
GGAGTAAGGATTCTTGGAGA+GGG + tig0012323:49885-49904 Msa1351560:CDS 45.0%
TCTTGGAGAGGGAAAGTTCT+TGG + tig0012323:49896-49915 Msa1351560:CDS 45.0%
CCCTTGAATGCATGTATCTC+AGG - tig0012323:50107-50126 None:intergenic 45.0%
GAATTTCCAGCAATGAGTGC+AGG - tig0012323:50350-50369 None:intergenic 45.0%
GAAACAGGGCCATAAGAAAG+TGG - tig0012323:50466-50485 None:intergenic 45.0%
TTTATGAGGTAGGGCCTGTT+TGG - tig0012323:50714-50733 None:intergenic 45.0%
AGCATCGTACAGCCATTAGA+AGG - tig0012323:50820-50839 None:intergenic 45.0%
CTGTACGATGCTGCATTTCA+GGG + tig0012323:50828-50847 Msa1351560:intron 45.0%
GTTCATTGCTTTCACTTGGC+TGG + tig0012323:50873-50892 Msa1351560:CDS 45.0%
GGTCTAATCAGCTGTGTTAC+TGG + tig0012323:50906-50925 Msa1351560:CDS 45.0%
! ATCAGCTGTGTTACTGGCAA+AGG + tig0012323:50912-50931 Msa1351560:CDS 45.0%
GACTTCCTTACAATGCATCC+AGG + tig0012323:50948-50967 Msa1351560:CDS 45.0%
TCACTCCTGGATGCATTGTA+AGG - tig0012323:50956-50975 None:intergenic 45.0%
CACCTTATACAGTTCACTCC+TGG - tig0012323:50969-50988 None:intergenic 45.0%
GCAAGGTTACAAGTCAGGAT+AGG - tig0012323:51035-51054 None:intergenic 45.0%
GGATAGCAAGGTTACAAGTC+AGG - tig0012323:51040-51059 None:intergenic 45.0%
AGTGAAGCTATCGGATAGCA+AGG - tig0012323:51052-51071 None:intergenic 45.0%
TTGCTATCCGATAGCTTCAC+TGG + tig0012323:51051-51070 Msa1351560:intron 45.0%
ATCTCCACCAGTGAAGCTAT+CGG - tig0012323:51061-51080 None:intergenic 45.0%
CCGTTACAAATGGAATTGGG+AGG + tig0012323:51117-51136 Msa1351560:CDS 45.0%
AGCACTTCTTGTGCAAAGGA+AGG + tig0012323:51241-51260 Msa1351560:intron 45.0%
GCACTTCTTGTGCAAAGGAA+GGG + tig0012323:51242-51261 Msa1351560:intron 45.0%
CACTTCTTGTGCAAAGGAAG+GGG + tig0012323:51243-51262 Msa1351560:intron 45.0%
GCGTATGATGTAATTGGCTG+AGG - tig0012323:51540-51559 None:intergenic 45.0%
! TCAGAGGTGTACTGCTGTTA+AGG + tig0012323:51678-51697 Msa1351560:CDS 45.0%
GGAATCAGTCGCTGATAGTT+TGG + tig0012323:51714-51733 Msa1351560:CDS 45.0%
GGTTGAGAAAGTGAAGGCTA+AGG + tig0012323:51735-51754 Msa1351560:CDS 45.0%
TGAGAAAGTGAAGGCTAAGG+TGG + tig0012323:51738-51757 Msa1351560:CDS 45.0%
ATATCACAGTCATCCTCAGG+TGG - tig0012323:51781-51800 None:intergenic 45.0%
GTGATATCACAGTCATCCTC+AGG - tig0012323:51784-51803 None:intergenic 45.0%
GCCAGACATGAGAATTGCAT+GGG + tig0012323:51939-51958 Msa1351560:CDS 45.0%
TCCCATGCAATTCTCATGTC+TGG - tig0012323:51943-51962 None:intergenic 45.0%
AGACATGAGAATTGCATGGG+AGG + tig0012323:51942-51961 Msa1351560:CDS 45.0%
ACAGGCAAAACTGGTCCAAA+TGG - tig0012323:51970-51989 None:intergenic 45.0%
TGCTAGCAACTTTGGACTTC+AGG + tig0012323:52032-52051 Msa1351560:CDS 45.0%
TCAGGGATGTGTGTTCACAA+AGG + tig0012323:52627-52646 Msa1351560:intron 45.0%
! GCCAGATCATTTTCCCTTTC+AGG + tig0012323:52726-52745 Msa1351560:CDS 45.0%
AGACAGTGGAATTGGATCAC+AGG + tig0012323:52982-53001 Msa1351560:CDS 45.0%
GACAGTGGAATTGGATCACA+GGG + tig0012323:52983-53002 Msa1351560:CDS 45.0%
AGGGCTTGGCAAGTTTATCA+CGG - tig0012323:53050-53069 None:intergenic 45.0%
CCAAGCCCTTCTTATACCAT+GGG + tig0012323:53061-53080 Msa1351560:CDS 45.0%
CAGCTCACTATGACTTATGG+AGG - tig0012323:53142-53161 None:intergenic 45.0%
!! AAGAGAGTAGGAGGAGTGTC+TGG - tig0012323:48422-48441 None:intergenic 50.0%
! CAAAGACCCCACTTTGGAAG+AGG + tig0012323:49605-49624 Msa1351560:CDS 50.0%
TTCAGCCCTCTTCCAAAGTG+GGG - tig0012323:49614-49633 None:intergenic 50.0%
GTTCAGCCCTCTTCCAAAGT+GGG - tig0012323:49615-49634 None:intergenic 50.0%
AGTTCAGCCCTCTTCCAAAG+TGG - tig0012323:49616-49635 None:intergenic 50.0%
GAGGGCTGAACTTCTTCACA+AGG + tig0012323:49624-49643 Msa1351560:CDS 50.0%
ATTGCTCCTGCACTCATTGC+TGG + tig0012323:50341-50360 Msa1351560:CDS 50.0%
GCTGTACGATGCTGCATTTC+AGG + tig0012323:50827-50846 Msa1351560:intron 50.0%
AGCTGTTGCAGCTCTTCACA+TGG + tig0012323:50851-50870 Msa1351560:CDS 50.0%
!!! CACTTGGCTGGTTTTCCCAA+AGG + tig0012323:50885-50904 Msa1351560:CDS 50.0%
! CTGTGTTACTGGCAAAGGCT+CGG + tig0012323:50917-50936 Msa1351560:CDS 50.0%
CTATCCGATAGCTTCACTGG+TGG + tig0012323:51054-51073 Msa1351560:intron 50.0%
AGCTTCACTGGTGGAGATAC+CGG + tig0012323:51063-51082 Msa1351560:intron 50.0%
!! ACTAAGTGTTGGACCACCTG+AGG + tig0012323:51765-51784 Msa1351560:CDS 50.0%
GGCCAGACATGAGAATTGCA+TGG + tig0012323:51938-51957 Msa1351560:CDS 50.0%
ATTGCATGGGAGGAGCCATT+TGG + tig0012323:51952-51971 Msa1351560:CDS 50.0%
ATAAATTCTGCCCCAGCTCG+TGG + tig0012323:52703-52722 Msa1351560:CDS 50.0%
TAAATTCTGCCCCAGCTCGT+GGG + tig0012323:52704-52723 Msa1351560:CDS 50.0%
ACGTTAGCTCGCTGTGATTC+TGG - tig0012323:52805-52824 None:intergenic 50.0%
GCCAAGCCCTTCTTATACCA+TGG + tig0012323:53060-53079 Msa1351560:CDS 50.0%
CCCATGGTATAAGAAGGGCT+TGG - tig0012323:53064-53083 None:intergenic 50.0%
CATGGGCAAAGACCCCACTT+TGG + tig0012323:49599-49618 Msa1351560:CDS 55.0%
TGTGCTCAAGCCTCCAACTC+AGG + tig0012323:50373-50392 Msa1351560:CDS 55.0%
ACTGGCAAAGGCTCGGAGAT+TGG + tig0012323:50924-50943 Msa1351560:CDS 55.0%
TCTTGTGCAAAGGAAGGGGC+AGG + tig0012323:51247-51266 Msa1351560:intron 55.0%
CTTGTGCAAAGGAAGGGGCA+GGG + tig0012323:51248-51267 Msa1351560:intron 55.0%
AATGATCTGGCCCACGAGCT+GGG - tig0012323:52717-52736 None:intergenic 55.0%
AAATGATCTGGCCCACGAGC+TGG - tig0012323:52718-52737 None:intergenic 55.0%
CCTCTTGGGAGCAAGCTGCA+TGG - tig0012323:49537-49556 None:intergenic 60.0%
! CCATGCAGCTTGCTCCCAAG+AGG + tig0012323:49534-49553 Msa1351560:intron 60.0%
ATGATCTGGCCCACGAGCTG+GGG - tig0012323:52716-52735 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0012323 gene 48117 53476 48117 ID=Msa1351560;Name=Msa1351560
tig0012323 mRNA 48117 53476 48117 ID=Msa1351560-mRNA-1;Parent=Msa1351560;Name=Msa1351560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=377|1|1|1|1|1|9|389|496
tig0012323 exon 48117 48638 48117 ID=Msa1351560-mRNA-1:exon:7758;Parent=Msa1351560-mRNA-1
tig0012323 exon 49542 49735 49542 ID=Msa1351560-mRNA-1:exon:7759;Parent=Msa1351560-mRNA-1
tig0012323 exon 49843 49971 49843 ID=Msa1351560-mRNA-1:exon:7760;Parent=Msa1351560-mRNA-1
tig0012323 exon 50275 50394 50275 ID=Msa1351560-mRNA-1:exon:7761;Parent=Msa1351560-mRNA-1
tig0012323 exon 50849 50985 50849 ID=Msa1351560-mRNA-1:exon:7762;Parent=Msa1351560-mRNA-1
tig0012323 exon 51065 51220 51065 ID=Msa1351560-mRNA-1:exon:7763;Parent=Msa1351560-mRNA-1
tig0012323 exon 51675 52053 51675 ID=Msa1351560-mRNA-1:exon:7764;Parent=Msa1351560-mRNA-1
tig0012323 exon 52631 52747 52631 ID=Msa1351560-mRNA-1:exon:7765;Parent=Msa1351560-mRNA-1
tig0012323 exon 52974 53476 52974 ID=Msa1351560-mRNA-1:exon:7766;Parent=Msa1351560-mRNA-1
tig0012323 five_prime_UTR 48117 48493 48117 ID=Msa1351560-mRNA-1:five_prime_utr;Parent=Msa1351560-mRNA-1
tig0012323 CDS 48494 48638 48494 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 CDS 49542 49735 49542 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 CDS 49843 49971 49843 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 CDS 50275 50394 50275 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 CDS 50849 50985 50849 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 CDS 51065 51220 51065 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 CDS 51675 52053 51675 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 CDS 52631 52747 52631 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 CDS 52974 53087 52974 ID=Msa1351560-mRNA-1:cds;Parent=Msa1351560-mRNA-1
tig0012323 three_prime_UTR 53088 53476 53088 ID=Msa1351560-mRNA-1:three_prime_utr;Parent=Msa1351560-mRNA-1
Gene Sequence

>Msa1351560

ATGGCTGCTACTGGAGTGCTTGCCGAGATTTTAGACGGAGATGTATACAAATATTATGCTGATGGAGAATGGAAGAAATCTACCTCTGGAAAAAGTGTTGCTATCATCAACCCTACTACAAGAAAGCCTCAATACAAAGTTCAAGCTTGCTCCCAAGAGGAAGTTAATAAGGTTATGGATTCAGCAAAATCAGCACAAAAGTCATGGGCAAAGACCCCACTTTGGAAGAGGGCTGAACTTCTTCACAAGGCAGCTGCAATCCTCAAAGAACACAAAGCTGCAATTGCAGAATGCCTAGTCAAAGAAATAGCAAAGCCAGCAAAAGATGCAGTTACAGAGGTTGTAAGATCTGGTGATTTGGTTTCTTACTGTGCTGAAGAAGGAGTAAGGATTCTTGGAGAGGGAAAGTTCTTGGTTTCAGATAGTTTTCCGGGAAATGAAAGGACCAAATATTGCCTCACTTCCAAGATCCCATTAGGAGTGATCTTAGCCATTCCGCCTTTTAACTATCCAGTCAATCTTGCTGTCTCAAAAATTGCTCCTGCACTCATTGCTGGAAATTCTATTGTGCTCAAGCCTCCAACTCAGGGAGCTGTTGCAGCTCTTCACATGGTTCATTGCTTTCACTTGGCTGGTTTTCCCAAAGGTCTAATCAGCTGTGTTACTGGCAAAGGCTCGGAGATTGGTGACTTCCTTACAATGCATCCAGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACCGGCATTGCAATTTCAAAGAAGGCAGGCATGATTCCGTTACAAATGGAATTGGGAGGAAAAGATGCTTGCATTGTACTTGAAGATGCTGACCTTGATTTGGTTGCTGCAAACATTATAAAAGGAGGTTTTTCATACAGTGGTCAGAGGTGTACTGCTGTTAAGGTTGTCTTGGTAATGGAATCAGTCGCTGATAGTTTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAACTAAGTGTTGGACCACCTGAGGATGACTGTGATATCACCCCAGTTGTATCAGAATCATCAGCCAATTTCATTGAAGGCTTGGTGAATGATGCTAAACAGAAAGGAGCAACATTCTGCCAAGAATACAAGAGAGAAGGGAATCTCATTTGGCCTTTGCTATTGGATAATGTTAGGCCAGACATGAGAATTGCATGGGAGGAGCCATTTGGACCAGTTTTGCCTGTAATTAGGATCAATTCTGTTGAAGAAGGTATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTGTTCACAAAGGATATCAACAAAGCAATGATGATTAGTGATGCAATGGAATCAGGAACAGTTCAGATAAATTCTGCCCCAGCTCGTGGGCCAGATCATTTTCCCTTTCAGGGTATAAAAGACAGTGGAATTGGATCACAGGGAATTACCAACAGCATAAACATGATGACAAAAATCAAAACTACCGTGATAAACTTGCCAAGCCCTTCTTATACCATGGGCTAA
Protein sequence

>Msa1351560

MAATGVLAEILDGDVYKYYADGEWKKSTSGKSVAIINPTTRKPQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAAIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLVEKVKAKVAKLSVGPPEDDCDITPVVSESSANFIEGLVNDAKQKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAMMISDAMESGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKIKTTVINLPSPSYTMG*