AlfalfaGEDB | Msa1221370

M. sativa cultivar zhongmu-4 / Msa1221370

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF00564.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221370	XP_003610160.4	97.062	1055	31	0	1	1055	1	1055	0.0	2125

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221370	sp\|Q9FPR3\|EDR1_ARATH	40.708	226	117	6	833	1055	667	878	7.58e-40	163

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221370	A0A396ILN3	97.062	1055	31	0	1	1055	1	1055	0.0	2125

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005500	Msa1221370	0.802295	6.002375e-49	-8.615850e-47
Msa0024390	Msa1221370	0.809775	1.601299e-50	-8.615850e-47
Msa0046670	Msa1221370	0.809260	2.065768e-50	-8.615850e-47
Msa0049670	Msa1221370	0.807461	4.999310e-50	-8.615850e-47
Msa0056220	Msa1221370	0.819834	9.429172e-53	-8.615850e-47
Msa0076280	Msa1221370	0.803962	2.714252e-49	-8.615850e-47
Msa0083200	Msa1221370	0.816099	6.584128e-52	-8.615850e-47
Msa0089540	Msa1221370	-0.812282	4.586123e-51	-8.615850e-47
Msa0112800	Msa1221370	0.801662	8.099467e-49	-8.615850e-47
Msa0124310	Msa1221370	0.801604	8.324169e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221370	MtrunA17_Chr4g0072741	97.062	1055	31	0	1	1055	1	1055	0.0	2125
Msa1221370	MtrunA17_Chr2g0310761	55.495	364	141	6	704	1055	805	1159	1.93e-120	399
Msa1221370	MtrunA17_Chr2g0310761	51.389	144	63	2	51	187	168	311	1.06e-31	134
Msa1221370	MtrunA17_Chr6g0461841	69.888	269	78	2	789	1055	920	1187	1.48e-119	397
Msa1221370	MtrunA17_Chr6g0461841	48.408	157	74	2	34	183	170	326	1.25e-31	134
Msa1221370	MtrunA17_Chr1g0196631	51.554	386	163	6	676	1055	753	1120	6.13e-117	389
Msa1221370	MtrunA17_Chr1g0196631	54.369	103	47	0	50	152	192	294	1.32e-28	124
Msa1221370	MtrunA17_Chr2g0310781	59.150	306	108	3	759	1055	768	1065	1.36e-115	384
Msa1221370	MtrunA17_Chr2g0310781	49.650	143	70	2	40	180	139	281	1.12e-31	134
Msa1221370	MtrunA17_Chr8g0357611	62.069	290	93	2	779	1055	1305	1590	1.07e-113	386

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221370	AT5G57610.1	51.555	1061	386	28	46	1055	18	1001	0.0	928
Msa1221370	AT3G24715.1	74.790	238	60	0	818	1055	819	1056	7.79e-120	395
Msa1221370	AT3G24715.1	44.882	127	67	1	51	177	175	298	9.24e-24	109
Msa1221370	AT3G24715.3	74.790	238	60	0	818	1055	819	1056	7.79e-120	395
Msa1221370	AT3G24715.3	44.882	127	67	1	51	177	175	298	9.24e-24	109
Msa1221370	AT3G24715.2	74.790	238	60	0	818	1055	819	1056	7.79e-120	395
Msa1221370	AT3G24715.2	44.882	127	67	1	51	177	175	298	9.24e-24	109
Msa1221370	AT1G04700.1	58.900	309	126	1	748	1055	678	986	1.32e-119	393
Msa1221370	AT1G04700.1	41.379	145	72	1	52	183	122	266	5.76e-24	109
Msa1221370	AT1G04700.2	58.900	309	126	1	748	1055	678	986	1.32e-119	393

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Find 333 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAGAGGTTGAAGA+TGG	0.497920	8_1:-84913803	None:intergenic
AAAATGAGGGAGCTGTATGA+AGG	0.570720	8_1:+84914533	Msa1221370:CDS
AAACAACACACTCTAGTGTC+AGG	0.539743	8_1:+84917970	Msa1221370:CDS
AACAACAGAAGCAGCGGTGT+TGG	0.471036	8_1:-84916349	None:intergenic
AACACACTCTAGTGTCAGGA+GGG	0.605131	8_1:+84917974	Msa1221370:CDS
AACCGGTTGATGAACATGAT+TGG	0.473193	8_1:-84915629	None:intergenic
AACCGGTTGGACCTGAATTG+GGG	0.524318	8_1:+84915644	Msa1221370:CDS
AACGTTGTTTGGTTGCCTAC+TGG	0.395575	8_1:+84915229	Msa1221370:CDS
AACTAGTGATACCTGATAAA+GGG	0.444088	8_1:-84913996	None:intergenic
AACTTCCCATCTTGTGGACG+TGG	0.587859	8_1:-84914440	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAATAGGAAGAAGAAGA+TGG	-	chr8_1:84913762-84913781	None:intergenic	30.0%
AAAATGAAAGAGGTTGAAGA+TGG	-	chr8_1:84913806-84913825	None:intergenic	30.0%
TGAATGAAGGAAAATGAAAG+AGG	-	chr8_1:84913816-84913835	None:intergenic	30.0%
CATTTCATATTCCCTTTATC+AGG	+	chr8_1:84913985-84914004	Msa1221370:five_prime_UTR	30.0%
AACTAGTGATACCTGATAAA+GGG	-	chr8_1:84913999-84914018	None:intergenic	30.0%
ACAACAACACTTTATGATGA+TGG	+	chr8_1:84914310-84914329	Msa1221370:CDS	30.0%
TCATGATTCTGAGTATCATT+GGG	-	chr8_1:84915487-84915506	None:intergenic	30.0%
CAGTTATTATCTACTCCATA+AGG	-	chr8_1:84915766-84915785	None:intergenic	30.0%
TGATAAATGCTGGAATAATG+AGG	+	chr8_1:84915899-84915918	Msa1221370:CDS	30.0%
GATAAATGCTGGAATAATGA+GGG	+	chr8_1:84915900-84915919	Msa1221370:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	84913696	84918284	84913696	ID=Msa1221370;Name=Msa1221370
chr8_1	mRNA	84913696	84918284	84913696	ID=Msa1221370-mRNA-1;Parent=Msa1221370;Name=Msa1221370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=555\|1\|1\|1\|1\|1\|7\|15\|1060
chr8_1	exon	84913696	84916629	84913696	ID=Msa1221370-mRNA-1:exon:30488;Parent=Msa1221370-mRNA-1
chr8_1	exon	84916745	84916849	84916745	ID=Msa1221370-mRNA-1:exon:30489;Parent=Msa1221370-mRNA-1
chr8_1	exon	84916967	84917119	84916967	ID=Msa1221370-mRNA-1:exon:30490;Parent=Msa1221370-mRNA-1
chr8_1	exon	84917381	84917544	84917381	ID=Msa1221370-mRNA-1:exon:30491;Parent=Msa1221370-mRNA-1
chr8_1	exon	84917667	84917814	84917667	ID=Msa1221370-mRNA-1:exon:30492;Parent=Msa1221370-mRNA-1
chr8_1	exon	84917943	84918065	84917943	ID=Msa1221370-mRNA-1:exon:30493;Parent=Msa1221370-mRNA-1
chr8_1	exon	84918159	84918284	84918159	ID=Msa1221370-mRNA-1:exon:30494;Parent=Msa1221370-mRNA-1
chr8_1	five_prime_UTR	84913696	84914250	84913696	ID=Msa1221370-mRNA-1:five_prime_utr;Parent=Msa1221370-mRNA-1
chr8_1	CDS	84914251	84916629	84914251	ID=Msa1221370-mRNA-1:cds;Parent=Msa1221370-mRNA-1
chr8_1	CDS	84916745	84916849	84916745	ID=Msa1221370-mRNA-1:cds;Parent=Msa1221370-mRNA-1
chr8_1	CDS	84916967	84917119	84916967	ID=Msa1221370-mRNA-1:cds;Parent=Msa1221370-mRNA-1
chr8_1	CDS	84917381	84917544	84917381	ID=Msa1221370-mRNA-1:cds;Parent=Msa1221370-mRNA-1
chr8_1	CDS	84917667	84917814	84917667	ID=Msa1221370-mRNA-1:cds;Parent=Msa1221370-mRNA-1
chr8_1	CDS	84917943	84918065	84917943	ID=Msa1221370-mRNA-1:cds;Parent=Msa1221370-mRNA-1
chr8_1	CDS	84918159	84918269	84918159	ID=Msa1221370-mRNA-1:cds;Parent=Msa1221370-mRNA-1
chr8_1	three_prime_UTR	84918270	84918284	84918270	ID=Msa1221370-mRNA-1:three_prime_utr;Parent=Msa1221370-mRNA-1

Gene Sequence

>Msa1221370

ATGTGTAATAAAAGGTTTCAATGTTTGAGCGAGTCTGAGAATACTGTAATTGATCATAGACAACAACACTTTATGATGATGGATAGTCCCACAGCCATTAGATCACCGGCCACCACCGGTTCGGGTTCCGGTTCGAACGATGATGGTCGGCGTGTTAAATTTTTGTGTAGCTTTCTAGGTAGCATAATGCCACGTCCACAAGATGGGAAGTTACGTTATGTAGGTGGAGAGACACGAATTGTGAGTGTTTCTAGGGATATTAGTTTTGAGGAGTTGATGGGGAAAATGAGGGAGCTGTATGAAGGTGTTGCTGTGTTGAAGTATCAACAACCTGATGAAGATCTTGATGCACTTGTTTCTGTTGTTAATGATGATGATGTGGTTAATATGATGGAAGAGTATGATAAGTTGGGTTCTGGAGATGGGTTCACTAGGCTTAGGATTTTCTTGTTTTCGCAATTGGAGCAAGATGGTTCGGCACATTTCATTGATGGGGATGATCCTGAGAGGAGGTATGTGGATGCATTGAATAGTTTGAATGATGCTTCTGAGTTAAGGAGGTTGCAACAGATGGAGTTTCCATTGATTGGTACTGTTGAGGATATCCATGTGGGTGATCAGTACATTAGTCCGGTTGGTATGGAAAATGGGATTCTTAGTCAGAGAAGTGGGGAGCTAGCTATGTCACAATATGGTTTGCATCATATGCCTATTCAGCATCAGCAACCTATGGGCCAGCGGTATAATGAAATCGATGTTCCGTGGAATTCTGGTTATTACTCTCCTAGGCATCACGGTCAGTGTCACCATGATTCTAGAACATCATTGGTTGAGTATCCGTCTTCACCTTCTGGTGCAAGGTACCGAATGCCGTTTCCTGAGATGCCAGATAAGGGAATTGATAGAGTGTCGGACGAGTATGCTCGACATCACGTAAACCACCATCCTGTGTATGATAATCAACCGCAGTATCCGGAAAACGTTGTTTGGTTGCCTACTGGACCAGCACATGGTGGTGATAAGTCTGGTTTTCCAGGCAACGTTCTTCATGGCTCCCATGCTCTTGATGGGAATAATATATGCGAGCACTGTCGTATGAGTTTTCAGAGGCCTCAACCACATCTGGAGCATCCTAATATGCTTCCACCTGTTGCCATTCCATGTCCAGAATGTCATTCAAGCAGGGATGCTCTCATAGTGAATGCTGATGCCAAGTTACAACCTCCTATGTATCCCAATGATACTCAGAATCATGAGAGAGGATGTGGTTTGCAGCATCAAAATTCCGGAAGAGTGGGTGATCATTATGTTGGTGATGTTCCTATCATTAGTTTCTCTCCCGGACATGGTAGTATGATTGATGGACATGCTCTTCCTTCCAATCATGTTCATCAACCGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACCATGGCTGCTATACCGCATCTAAAAATTCCTCCACCGGAAGAATCCAGTGTGCAGTATGGAAATCCACCTTCTCCTTATGGAGTAGATAATAACTGTGCCATGCCTCGTGGACAAGCACCCGGTTATACTCTCTGGAGAAACGGGCCGACTCCGGTTCATATTGGACCACCGCATGAGGCAACTACGCTACCTCAGCCGGTTGATGGTGTGATAAATGCTGGAATAATGAGGGGAGAGGGCAGTCCAGGATTTTTTGTTGGACCAGATAGTCAAAGTCTTTGGGTTGATTCCTCACAGAAATTTTCAGGTCATGATGGGTCAGCCACCCCAGAATACCCTCATGCAAATGCTCCAAAGTTGAATCCAATGGCTATTGGTCAGGAAAATCCACACCCGATTATTGTAGATGCCATCCATCCTCTGCAGGATGTAAACGCTAGTACCTACTTGGAACCTGTGCAGCTGCAAAAATCTTCATTTCATATGGTTCACAATAATGGGGTTTTAAAAAATGATGCTCATTTGACTGAAGGGATTAGTTTGCAATCTATAAGTTTGCTTGGAGAAAAACAAGAAGCAAAAAAAGAGGGTACAGTTGAAAAATCTAATGTGCAAAGTATATCTTTTCCGGAACAAAATCAAATTGTTGGAGATGTATCCAACACCGCTGCTTCTGTTGTTGAATGTGATAATTCATTTTCGAAACCTGCATCAGGGTGTGAACATGGCAAGAAAGTGGCTGATAAGGGTTGTTCTACTCCTGAAGATTCTAAAGGTTTAGTTGATCAATTTAATATCTTGCCTGAGTTGATTGCTTCTGTTAAAAAGGCTGCGTTAGAATGCCAAGACGAGGTGAAACCTACAGTTAAAGAGAATGCCAATTGCCAGATGGACAATTCGAATACCAAAGAAGAAAAGGCGAATGAAGTTGAACCAGTGAATGTTCATGGTGATTTAGAACTGGACTCCGAAAACGACCGTGTTGATACTTCTAAAATCGAGCCTACGAAGGCTGAGGCAGAAGCAATTGCCAGGGGATTGCAGACGATTAAAAATGATGATTTGGAGGAGATCCGTGAGCTAGGTTCTGGAACTTATGGAGCTGTTTATCATGGGAAGTGGAAAGGTTCTGATGTCGCCATTAAGAGAATAAAAGCTAGTTGTTTTGCTGGAAGACCATCCGAAAGAGCAAGATTGATTGCCGATTTCTGGAAGGAGGCATTGATGCTTAGTTCATTGCATCATCCAAATGTTGTCTCTTTCTATGGTATTGTTCGTGATGGCCCTGATGGCTCTTTAGCTACAGTGACAGAATTCATGGTTAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGACAGAACGATAGATCGACGGAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAGAACATTGTTCATTTTGATTTGAAATGCGAGAATCTATTGGTAAATATGAGAGATCCACAAAGGCCTGTCTGCAAGATTGGTGATTTGGGTCTATCAAAGGTTAAACAACACACTCTAGTGTCAGGAGGGGTACGCGGAACTTTGCCGTGGATGGCACCTGAACTTCTTAGCGGGAAAAGCAATATGGTGTCAGAAAAGATTGATGTTTACTCGTTCGGGATAGTCATGTGGGAATTACTCACTGGCGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATAGGTGGGAACCAAGTAACAAACTAA

Protein sequence

>Msa1221370

MCNKRFQCLSESENTVIDHRQQHFMMMDSPTAIRSPATTGSGSGSNDDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSRDISFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQLEQDGSAHFIDGDDPERRYVDALNSLNDASELRRLQQMEFPLIGTVEDIHVGDQYISPVGMENGILSQRSGELAMSQYGLHHMPIQHQQPMGQRYNEIDVPWNSGYYSPRHHGQCHHDSRTSLVEYPSSPSGARYRMPFPEMPDKGIDRVSDEYARHHVNHHPVYDNQPQYPENVVWLPTGPAHGGDKSGFPGNVLHGSHALDGNNICEHCRMSFQRPQPHLEHPNMLPPVAIPCPECHSSRDALIVNADAKLQPPMYPNDTQNHERGCGLQHQNSGRVGDHYVGDVPIISFSPGHGSMIDGHALPSNHVHQPVGPELGVELFPDQTMAAIPHLKIPPPEESSVQYGNPPSPYGVDNNCAMPRGQAPGYTLWRNGPTPVHIGPPHEATTLPQPVDGVINAGIMRGEGSPGFFVGPDSQSLWVDSSQKFSGHDGSATPEYPHANAPKLNPMAIGQENPHPIIVDAIHPLQDVNASTYLEPVQLQKSSFHMVHNNGVLKNDAHLTEGISLQSISLLGEKQEAKKEGTVEKSNVQSISFPEQNQIVGDVSNTAASVVECDNSFSKPASGCEHGKKVADKGCSTPEDSKGLVDQFNILPELIASVKKAALECQDEVKPTVKENANCQMDNSNTKEEKANEVEPVNVHGDLELDSENDRVDTSKIEPTKAEAEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGNQVTN*