AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163500 MtrunA17_Chr1g0178481 96.931 619 18 1 1 619 1 618 0.0 1233
Msa0163500 MtrunA17_Chr4g0061601 32.600 500 315 7 109 598 117 604 1.13e-69 238
Msa0163500 MtrunA17_Chr6g0452061 30.843 522 323 11 108 616 262 758 4.87e-66 231
Msa0163500 MtrunA17_Chr6g0452061 51.807 83 40 0 517 599 17 99 4.45e-18 88.6
Msa0163500 MtrunA17_Chr6g0452111 31.002 529 320 11 108 616 744 1247 2.40e-64 230
Msa0163500 MtrunA17_Chr6g0452111 41.026 273 153 4 347 615 333 601 9.14e-49 184
Msa0163500 MtrunA17_Chr6g0452141 30.451 532 327 10 104 616 739 1246 3.45e-62 223
Msa0163500 MtrunA17_Chr6g0452141 44.898 245 128 3 374 615 355 595 4.45e-50 187
Msa0163500 MtrunA17_Chr6g0452171 30.206 533 327 10 104 616 742 1249 3.18e-61 221
Msa0163500 MtrunA17_Chr6g0452171 42.125 273 150 4 347 615 326 594 9.70e-51 189
Msa0163500 MtrunA17_Chr6g0451911 30.517 580 354 13 55 616 695 1243 6.98e-61 219
Msa0163500 MtrunA17_Chr6g0451911 42.857 273 148 4 347 615 326 594 7.61e-51 190
Msa0163500 MtrunA17_Chr3g0123411 32.794 494 290 14 135 606 657 1130 2.03e-60 218
Msa0163500 MtrunA17_Chr3g0123411 29.979 477 309 9 135 598 1 465 4.91e-46 175
Msa0163500 MtrunA17_Chr6g0452041 30.337 534 327 11 103 616 740 1248 2.04e-60 218
Msa0163500 MtrunA17_Chr6g0452041 41.392 273 152 4 347 615 326 594 3.25e-49 185
Msa0163500 MtrunA17_Chr1g0156821 33.333 495 282 13 135 605 747 1217 2.66e-59 215
Msa0163500 MtrunA17_Chr1g0156821 41.991 231 128 2 370 598 362 588 1.10e-44 171
Msa0163500 MtrunA17_Chr6g0452071 38.730 315 178 5 307 616 138 442 6.29e-59 204
Msa0163500 MtrunA17_Chr7g0227391 31.429 490 289 12 132 598 178 643 4.07e-58 207
Msa0163500 MtrunA17_Chr5g0412741 31.600 500 316 12 127 616 204 687 5.24e-58 207
Msa0163500 MtrunA17_Chr6g0451881 31.641 512 286 16 135 616 759 1236 1.35e-57 210
Msa0163500 MtrunA17_Chr6g0451881 45.175 228 118 3 374 598 354 577 1.57e-49 186
Msa0163500 MtrunA17_Chr4g0041871 31.546 485 291 14 135 598 758 1222 1.47e-57 210
Msa0163500 MtrunA17_Chr4g0041871 30.390 487 295 13 135 598 94 559 8.02e-50 187
Msa0163500 MtrunA17_Chr6g0474071 32.134 417 229 7 233 599 20 432 2.91e-57 199
Msa0163500 MtrunA17_Chr2g0285191 30.843 522 334 10 108 615 779 1287 7.02e-57 207
Msa0163500 MtrunA17_Chr2g0285191 29.485 485 299 11 135 598 152 614 1.18e-52 195
Msa0163500 MtrunA17_Chr5g0433051 33.689 469 274 15 161 605 233 688 1.28e-56 203
Msa0163500 MtrunA17_Chr7g0264631 30.019 523 340 13 104 612 802 1312 3.20e-56 206
Msa0163500 MtrunA17_Chr7g0264631 30.080 502 307 14 134 617 179 654 5.58e-54 199
Msa0163500 MtrunA17_Chr5g0433071 34.091 440 272 9 173 605 262 690 1.41e-55 200
Msa0163500 MtrunA17_Chr4g0069351 31.412 503 303 11 132 616 786 1264 6.08e-55 202
Msa0163500 MtrunA17_Chr4g0069351 44.215 242 119 6 368 598 358 594 9.51e-52 192
Msa0163500 MtrunA17_Chr1g0180601 42.066 271 142 5 351 617 368 627 8.39e-55 201
Msa0163500 MtrunA17_Chr1g0180601 39.852 271 155 6 347 612 1019 1286 9.75e-53 195
Msa0163500 MtrunA17_Chr7g0233901 29.134 508 329 9 109 599 722 1215 2.62e-54 200
Msa0163500 MtrunA17_Chr7g0233901 40.152 264 134 6 364 615 332 583 3.55e-48 182
Msa0163500 MtrunA17_Chr2g0285301 28.056 499 333 10 115 598 93 580 4.88e-54 199
Msa0163500 MtrunA17_Chr2g0285301 30.739 514 325 12 108 605 747 1245 3.91e-53 196
Msa0163500 MtrunA17_Chr6g0481921 28.903 474 316 9 135 598 25 487 5.85e-54 199
Msa0163500 MtrunA17_Chr6g0481921 29.245 530 333 13 108 619 653 1158 5.59e-50 187
Msa0163500 MtrunA17_Chr6g0453051 31.373 510 317 13 109 599 91 586 1.09e-53 198
Msa0163500 MtrunA17_Chr6g0453051 28.926 484 334 8 120 598 746 1224 7.38e-50 187
Msa0163500 MtrunA17_Chr5g0410921 40.864 301 164 8 304 598 913 1205 2.24e-53 197
Msa0163500 MtrunA17_Chr5g0410921 44.934 227 120 3 374 598 349 572 3.12e-50 188
Msa0163500 MtrunA17_Chr2g0285311 27.699 491 340 9 115 598 103 585 2.31e-53 197
Msa0163500 MtrunA17_Chr2g0285311 29.944 531 327 15 108 615 751 1259 2.57e-51 191
Msa0163500 MtrunA17_Chr3g0119381 29.053 475 299 10 143 598 160 615 2.75e-53 197
Msa0163500 MtrunA17_Chr3g0119381 36.712 365 205 11 273 617 938 1296 1.06e-48 183
Msa0163500 MtrunA17_Chr1g0193991 43.348 233 125 4 369 598 377 605 1.57e-52 195
Msa0163500 MtrunA17_Chr1g0193991 41.065 263 151 4 347 606 1009 1270 5.56e-48 181
Msa0163500 MtrunA17_Chr1g0194031 43.290 231 124 4 369 596 372 598 3.19e-52 193
Msa0163500 MtrunA17_Chr1g0194001 42.205 263 148 4 347 606 112 373 3.23e-52 184
Msa0163500 MtrunA17_Chr4g0069361 30.952 504 304 13 132 616 786 1264 5.45e-52 193
Msa0163500 MtrunA17_Chr4g0069361 43.697 238 120 5 370 598 362 594 9.78e-52 192
Msa0163500 MtrunA17_Chr4g0069401 29.079 478 310 11 135 598 127 589 4.80e-51 190
Msa0163500 MtrunA17_Chr4g0069401 30.297 505 306 14 132 616 784 1262 1.60e-49 186
Msa0163500 MtrunA17_Chr4g0069411 42.520 254 141 4 355 605 1023 1274 2.02e-50 188
Msa0163500 MtrunA17_Chr4g0069411 35.948 306 179 7 301 598 316 612 4.01e-47 179
Msa0163500 MtrunA17_Chr6g0486841 31.238 525 323 15 109 612 86 593 2.68e-50 188
Msa0163500 MtrunA17_Chr6g0486841 29.637 496 287 12 135 598 753 1218 1.19e-48 183
Msa0163500 MtrunA17_Chr6g0452081 44.292 219 111 4 374 589 20 230 9.51e-50 172
Msa0163500 MtrunA17_Chr3g0138211 42.797 236 125 4 370 598 380 612 1.23e-49 186
Msa0163500 MtrunA17_Chr3g0138211 28.797 507 311 13 132 606 776 1264 7.76e-48 181
Msa0163500 MtrunA17_Chr4g0039821 40.959 271 148 5 349 616 1001 1262 1.77e-49 186
Msa0163500 MtrunA17_Chr4g0039821 43.231 229 121 4 374 598 369 592 5.63e-48 181
Msa0163500 MtrunA17_Chr8g0366481 38.333 300 173 6 304 598 310 602 1.12e-47 177
Msa0163500 MtrunA17_Chr8g0344651 28.876 516 318 16 108 599 325 815 1.47e-47 180
Msa0163500 MtrunA17_Chr8g0344651 27.239 536 327 13 108 615 968 1468 4.88e-44 169
Msa0163500 MtrunA17_Chr3g0128381 38.760 258 144 6 350 598 362 614 2.69e-46 173
Msa0163500 MtrunA17_Chr3g0128391 26.916 535 322 8 127 598 3 531 3.61e-44 166
Msa0163500 MtrunA17_Chr7g0222781 34.448 299 187 5 304 599 330 622 8.93e-43 166
Msa0163500 MtrunA17_Chr7g0222781 27.273 528 340 17 106 614 879 1381 5.19e-37 148
Msa0163500 MtrunA17_Chr1g0212701 30.827 399 237 9 226 616 259 626 3.06e-42 164
Msa0163500 MtrunA17_Chr1g0212701 38.430 242 134 6 377 614 1143 1373 8.81e-37 147
Msa0163500 MtrunA17_Chr6g0463181 25.106 470 330 9 155 613 983 1441 1.01e-36 147
Msa0163500 MtrunA17_Chr6g0463181 30.837 227 138 5 381 605 609 818 1.18e-20 97.1
Msa0163500 MtrunA17_Chr1g0183191 25.285 526 347 14 93 599 1001 1499 2.10e-36 146
Msa0163500 MtrunA17_Chr1g0183191 31.222 221 126 5 398 616 661 857 1.10e-19 94.0
Msa0163500 MtrunA17_Chr6g0463141 34.234 222 143 2 377 598 1249 1467 7.68e-36 144
Msa0163500 MtrunA17_Chr6g0463141 23.313 489 282 15 158 594 397 844 6.17e-18 88.6
Msa0163500 MtrunA17_Chr6g0463121 32.911 237 156 2 377 613 1224 1457 1.05e-35 144
Msa0163500 MtrunA17_Chr6g0463121 30.802 237 141 6 361 596 607 821 1.19e-23 106
Msa0163500 MtrunA17_Chr6g0472531 34.177 237 153 2 377 613 1175 1408 1.30e-35 144
Msa0163500 MtrunA17_Chr6g0472531 30.415 217 133 4 381 596 573 772 1.31e-21 100
Msa0163500 MtrunA17_Chr5g0412941 33.040 227 149 2 379 605 83 306 4.78e-35 135
Msa0163500 MtrunA17_Chr7g0262191 33.937 221 143 1 379 599 1282 1499 5.57e-35 142
Msa0163500 MtrunA17_Chr7g0262191 30.962 239 138 6 380 616 640 853 4.21e-20 95.5
Msa0163500 MtrunA17_Chr8g0359291 24.255 470 334 9 155 613 181 639 1.29e-34 139
Msa0163500 MtrunA17_Chr8g0363771 31.718 227 152 1 379 605 1256 1479 1.47e-34 140
Msa0163500 MtrunA17_Chr8g0363771 25.223 337 208 12 295 616 543 850 4.41e-19 92.0
Msa0163500 MtrunA17_Chr2g0295921 32.159 227 151 1 379 605 1271 1494 1.69e-34 140
Msa0163500 MtrunA17_Chr2g0295921 25.503 298 190 10 325 616 596 867 5.92e-18 88.6
Msa0163500 MtrunA17_Chr6g0463151 32.489 237 157 2 377 613 1042 1275 3.65e-34 139
Msa0163500 MtrunA17_Chr6g0463151 27.542 236 146 5 361 594 425 637 2.45e-19 92.8
Msa0163500 MtrunA17_Chr6g0463201 33.636 220 142 2 379 598 1232 1447 3.68e-34 139
Msa0163500 MtrunA17_Chr6g0463201 30.396 227 139 5 381 605 627 836 6.45e-21 98.2
Msa0163500 MtrunA17_Chr6g0463131 33.043 230 149 3 377 604 1225 1451 4.82e-34 139
Msa0163500 MtrunA17_Chr6g0463131 31.188 202 122 4 398 598 639 824 1.81e-20 96.7
Msa0163500 MtrunA17_Chr2g0295901 32.468 231 152 2 379 608 1256 1483 5.86e-34 139
Msa0163500 MtrunA17_Chr2g0295901 25.893 336 207 12 297 616 546 855 1.25e-19 94.0
Msa0163500 MtrunA17_Chr5g0445741 24.497 547 336 16 94 605 968 1472 6.07e-34 139
Msa0163500 MtrunA17_Chr5g0445741 25.240 313 203 8 296 598 542 833 3.20e-19 92.4
Msa0163500 MtrunA17_Chr2g0295911 32.159 227 151 1 379 605 1259 1482 7.88e-34 138
Msa0163500 MtrunA17_Chr2g0295911 27.315 216 133 4 402 616 663 855 1.25e-18 90.9
Msa0163500 MtrunA17_Chr5g0445671 30.888 259 172 4 351 605 826 1081 2.06e-33 137
Msa0163500 MtrunA17_Chr5g0445671 25.240 313 203 8 296 598 151 442 8.61e-19 90.9
Msa0163500 MtrunA17_Chr8g0341851 32.599 227 150 1 379 605 1218 1441 3.95e-33 136
Msa0163500 MtrunA17_Chr8g0341851 23.883 582 357 20 72 612 298 834 1.28e-26 115
Msa0163500 MtrunA17_Chr5g0412721 31.349 252 166 4 351 598 1212 1460 4.59e-33 136
Msa0163500 MtrunA17_Chr5g0412721 25.857 321 198 9 296 598 524 822 1.02e-20 97.4
Msa0163500 MtrunA17_Chr3g0101471 30.677 251 168 4 351 598 1027 1274 5.56e-33 135
Msa0163500 MtrunA17_Chr3g0101471 31.818 220 126 5 398 616 448 644 8.60e-22 100
Msa0163500 MtrunA17_Chr8g0376961 32.456 228 149 3 379 605 1196 1419 1.81e-32 134
Msa0163500 MtrunA17_Chr8g0376961 25.321 312 203 8 300 601 503 794 3.69e-18 89.4
Msa0163500 MtrunA17_Chr2g0285731 35.294 221 140 1 378 598 1234 1451 3.17e-32 133
Msa0163500 MtrunA17_Chr2g0285731 32.195 205 117 4 398 598 633 819 1.27e-21 100
Msa0163500 MtrunA17_Chr3g0101441 29.084 251 172 3 351 598 1029 1276 4.02e-32 133
Msa0163500 MtrunA17_Chr3g0101441 25.595 336 210 10 292 616 340 646 4.78e-20 95.1
Msa0163500 MtrunA17_Chr3g0101461 32.727 220 145 2 379 598 1060 1276 5.75e-32 132
Msa0163500 MtrunA17_Chr3g0101461 25.298 336 211 10 292 616 340 646 1.36e-20 97.1
Msa0163500 MtrunA17_Chr6g0463391 32.273 220 145 2 379 598 412 627 6.63e-32 131
Msa0163500 MtrunA17_Chr5g0445701 33.333 201 131 1 389 589 4 201 6.88e-32 124
Msa0163500 MtrunA17_Chr1g0202221 31.081 222 150 1 377 598 1131 1349 6.89e-32 132
Msa0163500 MtrunA17_Chr1g0202221 23.650 537 339 18 102 610 342 835 6.29e-21 98.2
Msa0163500 MtrunA17_Chr8g0337121 30.085 236 162 1 378 613 1256 1488 8.60e-32 132
Msa0163500 MtrunA17_Chr8g0337121 25.000 348 218 12 261 598 516 830 5.79e-19 91.7
Msa0163500 MtrunA17_Chr8g0337191 30.085 236 162 1 378 613 1236 1468 1.21e-31 131
Msa0163500 MtrunA17_Chr8g0337191 25.194 258 167 8 347 598 573 810 1.33e-16 84.3
Msa0163500 MtrunA17_Chr6g0463211 31.818 220 146 2 379 598 1298 1513 1.58e-31 131
Msa0163500 MtrunA17_Chr6g0463211 25.484 310 186 8 310 598 576 861 1.61e-20 96.7
Msa0163500 MtrunA17_Chr8g0353541 29.502 261 172 3 351 605 795 1049 2.60e-31 130
Msa0163500 MtrunA17_Chr8g0353541 29.091 220 132 4 398 616 226 422 3.03e-19 92.4
Msa0163500 MtrunA17_Chr3g0085281 32.127 221 145 4 379 598 1219 1435 6.02e-31 129
Msa0163500 MtrunA17_Chr3g0085281 25.490 306 206 7 300 598 507 797 2.31e-18 89.7
Msa0163500 MtrunA17_Chr8g0341751 31.278 227 153 1 379 605 1042 1265 1.50e-30 128
Msa0163500 MtrunA17_Chr8g0341751 29.864 221 129 5 398 616 442 638 1.25e-20 97.1
Msa0163500 MtrunA17_Chr6g0471281 31.955 266 175 4 351 613 1196 1458 2.70e-30 127
Msa0163500 MtrunA17_Chr6g0471281 31.163 215 130 4 381 594 623 820 1.23e-19 94.0
Msa0163500 MtrunA17_Chr3g0080981 24.682 551 379 13 71 598 911 1448 2.85e-30 127
Msa0163500 MtrunA17_Chr3g0080981 23.168 423 279 14 206 616 443 831 8.31e-19 91.3
Msa0163500 MtrunA17_Chr8g0353781 30.837 227 154 1 379 605 1209 1432 4.04e-30 127
Msa0163500 MtrunA17_Chr8g0353781 24.033 362 233 11 263 616 486 813 1.76e-21 99.8
Msa0163500 MtrunA17_Chr3g0101481 32.328 232 144 4 379 605 1253 1476 4.59e-30 127
Msa0163500 MtrunA17_Chr3g0101481 25.688 327 200 9 301 616 544 838 1.73e-19 93.6
Msa0163500 MtrunA17_Chr8g0341761 30.837 227 154 1 379 605 1203 1426 1.37e-29 125
Msa0163500 MtrunA17_Chr8g0341761 27.350 234 145 5 385 616 600 810 4.68e-20 95.1
Msa0163500 MtrunA17_Chr2g0333911 31.933 238 151 3 379 616 772 998 1.88e-29 124
Msa0163500 MtrunA17_Chr2g0333911 27.706 231 147 7 367 594 147 360 8.74e-15 78.2
Msa0163500 MtrunA17_Chr3g0080941 23.975 488 340 9 127 598 977 1449 7.27e-29 123
Msa0163500 MtrunA17_Chr3g0080941 23.441 401 276 7 206 598 443 820 4.75e-20 95.1
Msa0163500 MtrunA17_Chr8g0341811 30.876 217 147 1 389 605 1040 1253 4.08e-28 120
Msa0163500 MtrunA17_Chr8g0341811 29.204 226 136 4 392 616 449 651 5.42e-22 101
Msa0163500 MtrunA17_Chr1g0195691 32.456 228 149 3 379 605 1271 1494 5.57e-28 120
Msa0163500 MtrunA17_Chr1g0195691 24.419 430 266 14 206 616 475 864 7.81e-23 103
Msa0163500 MtrunA17_Chr8g0393151 33.632 223 134 4 389 606 27 240 5.95e-27 110
Msa0163500 MtrunA17_Chr8g0341801 30.000 220 151 1 379 598 185 401 3.98e-25 108
Msa0163500 MtrunA17_Chr6g0484351 30.909 220 149 1 379 598 410 626 6.81e-25 109
Msa0163500 MtrunA17_Chr6g0452051 38.372 172 98 4 347 514 247 414 9.72e-23 101
Msa0163500 MtrunA17_Chr8g0366471 43.860 114 64 0 502 615 7 120 3.94e-22 93.2
Msa0163500 MtrunA17_Chr1g0176451 35.065 231 126 10 381 594 1 224 7.41e-21 96.7
Msa0163500 MtrunA17_Chr8g0366451 37.241 145 82 4 374 514 308 447 3.00e-20 94.0
Msa0163500 MtrunA17_Chr6g0484361 30.978 184 110 3 398 580 622 789 4.91e-19 91.7
Msa0163500 MtrunA17_Chr5g0412921 29.151 271 156 9 352 616 584 824 6.41e-19 91.3
Msa0163500 MtrunA17_Chr8g0384391 31.776 214 131 8 389 594 48 254 1.64e-18 89.7
Msa0163500 MtrunA17_Chr5g0408061 34.956 226 127 10 381 594 47 264 1.82e-18 89.4
Msa0163500 MtrunA17_Chr7g0267971 33.333 234 129 11 381 596 138 362 2.09e-18 89.4
Msa0163500 MtrunA17_Chr1g0176441 32.000 250 143 11 381 612 149 389 2.94e-18 89.0
Msa0163500 MtrunA17_Chr6g0463401 25.000 424 250 15 158 555 406 787 3.52e-18 89.0
Msa0163500 MtrunA17_Chr1g0198931 33.061 245 121 11 381 594 76 308 6.21e-18 87.8
Msa0163500 MtrunA17_Chr3g0130331 30.734 218 135 7 389 596 50 261 3.74e-17 85.1
Msa0163500 MtrunA17_Chr2g0316301 32.759 232 133 10 393 608 69 293 6.14e-17 84.7
Msa0163500 MtrunA17_Chr3g0130211 30.392 204 121 5 396 596 54 239 1.23e-16 80.5
Msa0163500 MtrunA17_Chr1g0199471 31.718 227 139 9 380 596 500 720 1.98e-16 83.6
Msa0163500 MtrunA17_Chr8g0359931 34.694 196 100 7 397 578 66 247 5.15e-16 81.6
Msa0163500 MtrunA17_Chr1g0202431 31.019 216 130 8 388 594 39 244 7.12e-16 81.3
Msa0163500 MtrunA17_Chr4g0039261 32.367 207 127 6 397 595 51 252 9.15e-16 80.9
Msa0163500 MtrunA17_Chr7g0257341 31.455 213 136 6 398 608 573 777 1.56e-15 80.9
Msa0163500 MtrunA17_Chr8g0341791 29.299 157 100 3 461 616 19 165 3.81e-15 77.4
Msa0163500 MtrunA17_Chr7g0249091 29.060 234 122 8 393 596 96 315 4.58e-15 77.0
Msa0163500 MtrunA17_Chr4g0050261 28.571 245 149 7 367 595 43 277 1.88e-14 77.0
Msa0163500 MtrunA17_Chr8g0349441 29.189 185 102 4 380 555 36 200 2.22e-14 72.8
Msa0163500 MtrunA17_Chr2g0318061 31.579 209 127 8 397 596 31 232 3.83e-14 74.7
Msa0163500 MtrunA17_Chr4g0039251 29.858 211 127 6 397 595 93 294 3.90e-14 75.9
Msa0163500 MtrunA17_Chr2g0285231 45.333 75 41 0 531 605 25 99 1.15e-13 67.4
Msa0163500 MtrunA17_Chr4g0050251 28.571 245 149 8 367 595 43 277 1.35e-13 73.9
Msa0163500 MtrunA17_Chr3g0129301 30.256 195 109 7 385 577 437 606 1.71e-13 73.6
Msa0163500 MtrunA17_Chr8g0371961 42.169 83 48 0 389 471 10 92 1.72e-13 67.4
Msa0163500 MtrunA17_Chr4g0065231 29.104 268 136 11 373 612 48 289 2.38e-13 73.2
Msa0163500 MtrunA17_Chr3g0102731 30.275 218 124 9 392 594 93 297 5.89e-13 72.0
Msa0163500 MtrunA17_Chr5g0446901 32.227 211 123 10 397 594 109 312 1.35e-12 70.9
Msa0163500 MtrunA17_Chr3g0132711 25.822 213 148 5 396 605 208 413 1.67e-12 70.5
Msa0163500 MtrunA17_Chr3g0093041 24.510 204 144 5 396 596 194 390 4.47e-12 68.9
Msa0163500 MtrunA17_Chr3g0093091 22.059 272 195 7 349 608 578 844 1.21e-11 68.2
Msa0163500 MtrunA17_Chr6g0477811 30.579 242 144 11 368 595 36 267 2.66e-11 66.6
Msa0163500 MtrunA17_Chr7g0262321 30.526 190 119 7 396 578 567 750 3.75e-11 66.6
Msa0163500 MtrunA17_Chr1g0213091 27.638 199 107 7 397 576 122 302 3.99e-11 66.2
Msa0163500 MtrunA17_Chr4g0060431 22.273 220 163 4 392 608 610 824 4.29e-11 66.2
Msa0163500 MtrunA17_Chr4g0060501 23.005 213 156 4 388 597 621 828 4.40e-11 66.2
Msa0163500 MtrunA17_Chr8g0389101 27.542 236 140 9 381 596 37 261 6.22e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163500 AT5G03910.1 57.605 618 249 3 8 619 24 634 0.0 720
Msa0163500 AT3G28345.1 32.379 559 332 12 79 616 691 1224 4.52e-66 235
Msa0163500 AT3G28345.1 42.063 252 139 3 367 615 345 592 2.77e-50 188
Msa0163500 AT3G28415.2 32.630 521 325 10 106 616 709 1213 1.62e-63 228
Msa0163500 AT3G28415.2 39.921 253 143 4 367 615 332 579 1.04e-46 177
Msa0163500 AT3G28415.1 32.630 521 325 10 106 616 701 1205 2.47e-63 227
Msa0163500 AT3G28415.1 39.921 253 143 4 367 615 324 571 1.29e-46 177
Msa0163500 AT5G39040.1 31.660 518 309 9 115 614 132 622 1.85e-62 218
Msa0163500 AT1G70610.2 32.305 486 303 12 127 599 22 494 3.99e-61 212
Msa0163500 AT3G28390.1 32.022 534 308 12 108 616 706 1209 6.40e-61 220
Msa0163500 AT3G28390.1 42.276 246 127 4 364 598 322 563 2.45e-46 177
Msa0163500 AT3G28380.1 30.794 617 357 18 42 616 636 1224 2.86e-60 218
Msa0163500 AT3G28380.1 41.016 256 136 5 368 614 346 595 9.86e-47 178
Msa0163500 AT1G70610.1 32.305 486 303 12 127 599 203 675 8.02e-60 212
Msa0163500 AT3G28360.1 31.818 506 292 12 135 616 734 1210 2.10e-59 216
Msa0163500 AT3G28360.1 43.363 226 125 2 374 598 339 562 2.09e-45 174
Msa0163500 AT1G28010.1 29.860 499 331 11 109 598 100 588 6.38e-58 211
Msa0163500 AT1G28010.1 30.061 489 292 13 135 598 759 1222 5.74e-52 193
Msa0163500 AT5G58270.1 31.261 563 346 17 64 605 159 701 2.09e-57 206
Msa0163500 AT4G28630.1 33.790 438 260 13 177 598 228 651 8.81e-56 201
Msa0163500 AT1G27940.1 28.543 501 335 11 109 598 99 587 1.90e-55 204
Msa0163500 AT1G27940.1 30.382 497 280 12 135 598 757 1220 7.10e-54 199
Msa0163500 AT1G27940.2 43.290 231 125 2 370 598 147 373 5.35e-55 202
Msa0163500 AT1G27940.2 30.382 497 280 12 135 598 543 1006 5.71e-54 199
Msa0163500 AT4G25450.3 29.567 531 305 11 124 599 4 520 6.57e-55 196
Msa0163500 AT1G10680.1 32.609 506 291 15 135 614 737 1218 1.43e-54 201
Msa0163500 AT1G10680.1 42.460 252 131 5 367 615 347 587 1.56e-51 192
Msa0163500 AT2G36910.1 44.400 250 125 4 371 617 358 596 1.56e-54 201
Msa0163500 AT2G36910.1 38.462 273 156 6 347 612 988 1255 1.53e-50 189
Msa0163500 AT4G25450.1 29.444 540 312 11 115 599 164 689 5.79e-54 196
Msa0163500 AT4G28620.1 32.952 437 265 11 177 598 230 653 1.09e-53 195
Msa0163500 AT3G28860.1 29.817 493 318 11 120 598 748 1226 2.60e-53 197
Msa0163500 AT3G28860.1 30.876 502 322 11 109 598 93 581 7.54e-52 193
Msa0163500 AT4G25960.1 31.041 509 307 15 111 598 761 1246 3.35e-53 197
Msa0163500 AT4G25960.1 44.490 245 129 4 374 615 394 634 1.69e-51 192
Msa0163500 AT2G47000.3 43.830 235 125 3 374 605 377 607 3.47e-53 197
Msa0163500 AT2G47000.7 43.830 235 125 3 374 605 377 607 3.47e-53 197
Msa0163500 AT2G47000.4 43.830 235 125 3 374 605 377 607 3.59e-53 197
Msa0163500 AT2G47000.6 43.830 235 125 3 374 605 377 607 4.67e-53 197
Msa0163500 AT2G47000.6 31.862 521 311 16 109 606 769 1268 5.42e-53 196
Msa0163500 AT2G47000.5 43.830 235 125 3 374 605 377 607 4.67e-53 197
Msa0163500 AT2G47000.5 31.862 521 311 16 109 606 769 1268 5.42e-53 196
Msa0163500 AT2G47000.1 43.830 235 125 3 374 605 377 607 4.67e-53 197
Msa0163500 AT2G47000.1 31.862 521 311 16 109 606 769 1268 5.42e-53 196
Msa0163500 AT2G47000.2 43.830 235 125 3 374 605 377 607 5.19e-53 196
Msa0163500 AT2G47000.2 27.436 390 245 13 109 478 769 1140 2.14e-21 99.8
Msa0163500 AT1G02520.1 42.510 247 132 4 360 598 353 597 6.30e-52 193
Msa0163500 AT1G02520.1 30.040 506 325 11 109 598 759 1251 2.89e-49 186
Msa0163500 AT1G02520.2 42.510 247 132 4 360 598 353 597 6.30e-52 193
Msa0163500 AT1G02520.2 30.040 506 325 11 109 598 759 1251 2.89e-49 186
Msa0163500 AT1G02520.3 42.510 247 132 4 360 598 353 597 6.30e-52 193
Msa0163500 AT1G02520.3 30.040 506 325 11 109 598 759 1251 2.89e-49 186
Msa0163500 AT3G62150.3 41.036 251 136 4 354 598 375 619 1.18e-51 192
Msa0163500 AT3G62150.3 31.818 506 311 13 119 606 789 1278 6.39e-51 190
Msa0163500 AT3G62150.2 41.036 251 136 4 354 598 375 619 1.18e-51 192
Msa0163500 AT3G62150.2 31.818 506 311 13 119 606 789 1278 6.39e-51 190
Msa0163500 AT3G62150.1 41.036 251 136 4 354 598 375 619 1.18e-51 192
Msa0163500 AT3G62150.1 31.818 506 311 13 119 606 789 1278 6.39e-51 190
Msa0163500 AT1G10680.2 42.460 252 131 5 367 615 347 587 1.39e-51 192
Msa0163500 AT1G10680.2 32.444 450 258 14 135 562 737 1162 3.76e-44 170
Msa0163500 AT4G18050.2 44.583 240 119 5 368 598 347 581 4.45e-51 191
Msa0163500 AT4G18050.2 44.398 241 124 3 370 605 992 1227 3.74e-49 185
Msa0163500 AT4G18050.1 44.583 240 119 5 368 598 337 571 4.68e-51 191
Msa0163500 AT4G18050.1 44.398 241 124 3 370 605 982 1217 3.75e-49 185
Msa0163500 AT4G01830.2 29.920 498 306 13 132 606 501 978 8.66e-51 189
Msa0163500 AT4G01830.2 42.194 237 133 3 374 608 112 346 1.18e-49 186
Msa0163500 AT4G01830.1 29.920 498 306 13 132 606 735 1212 1.08e-50 190
Msa0163500 AT4G01830.1 42.194 237 133 3 374 608 346 580 1.11e-49 187
Msa0163500 AT5G46540.1 30.228 526 310 13 109 605 732 1229 1.25e-50 189
Msa0163500 AT5G46540.1 29.936 471 299 13 143 598 119 573 4.77e-50 188
Msa0163500 AT4G01820.1 29.688 512 318 12 118 606 719 1211 4.41e-50 188
Msa0163500 AT4G01820.1 41.473 258 140 5 360 608 320 575 2.15e-49 186
Msa0163500 AT4G01820.2 41.473 258 140 5 360 608 320 575 1.56e-49 186
Msa0163500 AT1G02530.2 40.891 247 136 4 360 598 340 584 1.66e-49 186
Msa0163500 AT1G02530.1 40.891 247 136 4 360 598 340 584 2.53e-49 186
Msa0163500 AT1G02530.1 40.873 252 144 4 351 598 996 1246 4.11e-47 179
Msa0163500 AT3G55320.1 36.996 273 156 6 347 616 381 640 2.00e-42 165
Msa0163500 AT3G55320.1 36.653 251 145 6 352 598 1136 1376 3.91e-36 145
Msa0163500 AT2G39480.2 36.000 275 160 6 347 618 199 460 8.23e-42 163
Msa0163500 AT2G39480.2 39.381 226 129 5 377 598 974 1195 3.64e-37 149
Msa0163500 AT2G39480.1 36.000 275 160 6 347 618 379 640 9.37e-42 163
Msa0163500 AT2G39480.1 39.381 226 129 5 377 598 1154 1375 3.57e-37 149
Msa0163500 AT1G04120.1 30.469 256 164 4 351 599 1235 1483 9.55e-34 138
Msa0163500 AT1G04120.1 31.818 220 126 4 398 616 640 836 1.62e-21 100
Msa0163500 AT1G04120.3 30.469 256 164 4 351 599 1200 1448 9.62e-34 138
Msa0163500 AT1G04120.3 31.818 220 126 4 398 616 605 801 1.71e-21 100
Msa0163500 AT3G60160.1 29.213 267 183 3 351 614 1222 1485 1.11e-33 138
Msa0163500 AT3G60160.1 33.136 169 95 5 461 614 698 863 9.30e-15 78.6
Msa0163500 AT3G60160.3 29.213 267 183 3 351 614 1186 1449 1.12e-33 138
Msa0163500 AT3G60160.3 33.136 169 95 5 461 614 662 827 9.90e-15 78.6
Msa0163500 AT3G60970.1 29.213 267 183 3 351 614 769 1032 2.76e-33 137
Msa0163500 AT3G60970.1 31.100 209 121 5 398 599 232 424 8.71e-19 91.7
Msa0163500 AT3G59140.1 29.740 269 177 5 351 613 1174 1436 6.43e-33 136
Msa0163500 AT3G59140.1 30.693 202 123 3 398 598 620 805 1.53e-21 100
Msa0163500 AT2G34660.3 26.265 514 332 12 108 599 682 1170 6.86e-33 135
Msa0163500 AT2G34660.3 25.314 478 317 14 133 598 82 531 1.12e-24 110
Msa0163500 AT2G34660.1 26.265 514 332 12 108 599 969 1457 7.39e-33 135
Msa0163500 AT2G34660.1 25.314 478 317 14 133 598 369 818 8.04e-25 110
Msa0163500 AT2G34660.2 26.265 514 332 12 108 599 969 1457 7.39e-33 135
Msa0163500 AT2G34660.2 25.314 478 317 14 133 598 369 818 8.04e-25 110
Msa0163500 AT1G30400.2 34.335 233 148 2 378 608 1234 1463 1.92e-32 134
Msa0163500 AT1G30400.2 24.842 475 323 12 133 598 369 818 1.09e-23 107
Msa0163500 AT1G30400.1 34.335 233 148 2 378 608 1234 1463 1.92e-32 134
Msa0163500 AT1G30400.1 24.842 475 323 12 133 598 369 818 1.09e-23 107
Msa0163500 AT3G13100.2 23.646 554 361 14 78 598 686 1210 1.93e-32 134
Msa0163500 AT3G13100.2 31.210 157 97 3 461 616 447 593 2.17e-14 77.4
Msa0163500 AT3G13100.1 33.182 220 144 2 379 598 1239 1455 2.26e-32 134
Msa0163500 AT3G13100.1 31.210 157 97 3 461 616 692 838 1.65e-14 77.8
Msa0163500 AT1G04120.2 30.385 260 154 6 351 599 1235 1478 1.10e-31 132
Msa0163500 AT1G04120.2 31.818 220 126 4 398 616 640 836 1.52e-21 100
Msa0163500 AT3G62700.1 33.182 220 144 1 379 598 1295 1511 1.13e-31 132
Msa0163500 AT3G62700.1 27.425 299 186 9 324 616 580 853 4.45e-22 102
Msa0163500 AT1G30420.1 24.652 503 338 10 117 598 967 1449 3.90e-31 130
Msa0163500 AT1G30420.1 23.736 455 302 14 158 598 396 819 1.91e-17 87.4
Msa0163500 AT3G13080.1 31.364 220 148 2 379 598 1267 1483 1.05e-30 129
Msa0163500 AT3G13080.1 25.150 334 214 9 292 616 548 854 1.83e-13 74.7
Msa0163500 AT3G13090.1 31.364 220 148 2 379 598 1217 1433 1.30e-30 129
Msa0163500 AT3G13090.1 30.374 214 131 5 387 598 607 804 1.61e-14 77.8
Msa0163500 AT1G30410.1 24.299 535 359 11 89 598 939 1452 1.57e-30 128
Msa0163500 AT1G30410.1 30.583 206 119 5 398 598 636 822 4.23e-16 83.2
Msa0163500 AT1G30410.2 24.299 535 359 11 89 598 936 1449 1.62e-30 128
Msa0163500 AT1G30410.2 30.583 206 119 5 398 598 633 819 4.12e-16 83.2
Msa0163500 AT1G30410.6 24.299 535 359 11 89 598 936 1449 1.62e-30 128
Msa0163500 AT1G30410.6 30.583 206 119 5 398 598 633 819 4.12e-16 83.2
Msa0163500 AT1G30410.4 24.299 535 359 11 89 598 936 1449 1.62e-30 128
Msa0163500 AT1G30410.4 30.583 206 119 5 398 598 633 819 4.12e-16 83.2
Msa0163500 AT1G30410.5 24.254 536 360 11 88 598 820 1334 1.71e-30 128
Msa0163500 AT1G30410.5 30.583 206 119 5 398 598 518 704 6.41e-16 82.4
Msa0163500 AT3G13080.5 30.909 220 149 2 379 598 1267 1483 1.36e-29 125
Msa0163500 AT3G13080.5 24.699 332 218 8 292 616 548 854 1.57e-13 74.7
Msa0163500 AT2G47800.1 32.127 221 147 1 379 599 1272 1489 1.81e-29 125
Msa0163500 AT2G47800.1 28.094 299 184 9 324 616 582 855 2.12e-21 100
Msa0163500 AT3G21250.5 30.000 220 151 1 379 598 1208 1424 9.62e-29 123
Msa0163500 AT3G21250.5 24.845 322 210 10 300 612 523 821 4.19e-20 95.9
Msa0163500 AT3G21250.4 30.000 220 151 1 379 598 1219 1435 1.05e-28 123
Msa0163500 AT3G21250.4 24.085 328 216 9 300 612 523 832 1.22e-21 100
Msa0163500 AT3G21250.2 30.000 220 151 1 379 598 1213 1429 1.06e-28 123
Msa0163500 AT3G21250.2 24.085 328 216 9 300 612 517 826 1.26e-21 100
Msa0163500 AT3G21250.1 30.000 220 151 1 379 598 1202 1418 1.09e-28 122
Msa0163500 AT3G21250.1 24.845 322 210 10 300 612 517 815 4.60e-20 95.9
Msa0163500 AT3G21250.6 30.000 220 151 1 379 598 797 1013 1.96e-28 122
Msa0163500 AT3G21250.6 24.085 328 216 9 300 612 101 410 1.78e-21 100
Msa0163500 AT3G21250.3 30.000 220 151 1 379 598 797 1013 1.96e-28 122
Msa0163500 AT3G21250.3 24.085 328 216 9 300 612 101 410 1.78e-21 100
Msa0163500 AT4G25450.2 25.000 468 282 11 115 527 164 617 8.13e-28 119
Msa0163500 AT1G67940.1 32.589 224 134 5 389 606 36 248 8.25e-27 110
Msa0163500 AT2G07680.1 28.315 279 185 3 321 598 1117 1381 9.12e-27 117
Msa0163500 AT2G07680.1 29.675 246 143 6 371 602 546 775 1.70e-19 94.0
Msa0163500 AT2G07680.3 28.315 279 185 3 321 598 1139 1403 9.26e-27 117
Msa0163500 AT2G07680.3 29.675 246 143 6 371 602 568 797 1.75e-19 94.0
Msa0163500 AT2G07680.5 28.315 279 185 3 321 598 1123 1387 9.80e-27 116
Msa0163500 AT2G07680.5 29.675 246 143 6 371 602 552 781 1.79e-19 94.0
Msa0163500 AT2G07680.6 28.315 279 185 3 321 598 1040 1304 9.87e-27 116
Msa0163500 AT2G07680.6 29.675 246 143 6 371 602 469 698 1.63e-19 94.0
Msa0163500 AT2G07680.4 28.315 279 185 3 321 598 1114 1378 1.01e-26 116
Msa0163500 AT2G07680.4 29.675 246 143 6 371 602 543 772 1.77e-19 94.0
Msa0163500 AT5G39040.2 26.178 382 245 7 115 478 132 494 5.79e-25 109
Msa0163500 AT3G13080.2 27.273 220 132 2 379 598 1267 1458 8.77e-23 104
Msa0163500 AT3G13080.2 24.699 332 218 8 292 616 548 854 1.91e-13 74.3
Msa0163500 AT2G07680.2 29.675 246 143 6 371 602 568 797 1.39e-19 94.0
Msa0163500 AT1G31770.1 33.810 210 117 8 397 594 81 280 3.82e-18 89.0
Msa0163500 AT1G30420.2 23.736 455 302 15 158 598 396 819 2.07e-17 87.0
Msa0163500 AT4G33460.1 29.469 207 119 6 397 596 59 245 3.68e-17 82.4
Msa0163500 AT2G13610.1 29.148 223 140 7 396 612 61 271 3.81e-17 85.9
Msa0163500 AT3G13220.1 34.101 217 117 11 392 594 101 305 1.95e-16 83.6
Msa0163500 AT1G30410.3 30.583 206 119 5 398 598 633 819 4.30e-16 82.8
Msa0163500 AT1G30410.3 22.760 413 276 10 89 476 936 1330 2.36e-15 80.5
Msa0163500 AT4G25750.1 31.441 229 139 7 397 619 30 246 5.78e-16 81.6
Msa0163500 AT3G25620.2 32.683 205 110 9 405 594 107 298 6.54e-16 82.0
Msa0163500 AT3G25620.1 32.683 205 110 9 405 594 107 298 1.04e-15 80.5
Msa0163500 AT1G51500.1 30.986 213 125 7 396 595 43 246 2.48e-15 80.1
Msa0163500 AT5G19410.1 34.000 200 103 9 397 578 66 254 2.82e-15 79.7
Msa0163500 AT5G19410.2 34.000 200 103 9 397 578 75 263 3.09e-15 79.7
Msa0163500 AT5G06530.3 32.365 241 132 10 381 598 157 389 3.18e-15 79.7
Msa0163500 AT5G06530.2 31.513 238 138 8 381 598 157 389 3.67e-15 79.7
Msa0163500 AT5G06530.1 31.513 238 138 8 381 598 157 389 3.67e-15 79.7
Msa0163500 AT3G60160.2 31.008 129 86 1 351 476 1222 1350 4.72e-15 79.7
Msa0163500 AT3G60160.2 33.136 169 95 5 461 614 698 863 6.38e-15 79.3
Msa0163500 AT1G51460.1 31.892 185 116 4 397 576 30 209 1.27e-14 77.8
Msa0163500 AT1G71960.1 31.925 213 121 10 397 595 83 285 1.29e-14 77.8
Msa0163500 AT5G52860.1 28.632 234 120 8 397 612 44 248 1.99e-14 77.0
Msa0163500 AT3G21090.1 31.050 219 129 8 390 595 37 246 2.84e-14 76.6
Msa0163500 AT1G65410.1 29.289 239 115 10 393 596 95 314 5.52e-14 74.3
Msa0163500 AT5G09930.1 31.053 190 108 5 388 577 418 584 7.85e-14 75.1
Msa0163500 AT3G13080.3 28.636 220 133 4 398 616 658 854 1.69e-13 74.7
Msa0163500 AT3G13080.4 28.636 220 133 4 398 616 658 854 1.69e-13 74.7
Msa0163500 AT4G27420.1 32.367 207 127 7 397 594 66 268 2.41e-13 73.6
Msa0163500 AT3G55130.1 29.730 222 133 10 388 595 90 302 2.92e-13 73.6
Msa0163500 AT5G61700.1 25.267 281 168 11 350 605 556 819 3.03e-13 73.6
Msa0163500 AT2G41700.2 29.493 217 135 6 398 608 498 702 3.15e-13 73.9
Msa0163500 AT2G41700.1 29.493 217 135 6 398 608 568 772 3.65e-13 73.6
Msa0163500 AT5G61740.2 24.900 249 174 8 367 608 538 780 4.59e-13 73.2
Msa0163500 AT5G61740.1 24.900 249 174 8 367 608 572 814 5.37e-13 72.8
Msa0163500 AT5G61740.3 24.900 249 174 8 367 608 433 675 6.11e-13 72.4
Msa0163500 AT2G37360.1 30.000 200 101 8 397 576 133 313 6.19e-13 72.4
Msa0163500 AT3G55110.1 28.326 233 128 9 385 595 79 294 7.57e-13 72.0
Msa0163500 AT1G71330.1 32.174 115 77 1 485 598 1 115 8.60e-13 70.5
Msa0163500 AT3G47730.1 24.510 204 144 5 396 596 545 741 9.47e-13 72.0
Msa0163500 AT1G53270.1 30.288 208 128 8 397 594 50 250 1.40e-12 71.2
Msa0163500 AT1G17840.1 29.187 209 133 6 396 595 68 270 2.91e-12 70.1
Msa0163500 AT5G61690.2 24.510 204 144 5 396 596 546 742 5.55e-12 69.7
Msa0163500 AT3G47780.1 26.180 233 138 9 392 608 626 840 5.95e-12 69.3
Msa0163500 AT3G55100.1 27.149 221 123 8 397 596 51 254 8.97e-12 68.6
Msa0163500 AT3G55100.2 27.149 221 123 8 397 596 51 254 8.97e-12 68.6
Msa0163500 AT2G39350.1 27.468 233 123 9 397 601 109 323 1.12e-11 68.6
Msa0163500 AT3G55090.1 27.477 222 117 9 397 594 107 308 1.37e-11 68.2
Msa0163500 AT1G53390.1 28.155 206 136 7 380 578 506 706 2.26e-11 67.8
Msa0163500 AT2G37010.2 28.205 234 138 9 380 596 483 703 2.28e-11 67.8
Msa0163500 AT2G37010.1 28.205 234 138 9 380 596 483 703 2.28e-11 67.8
Msa0163500 AT5G61730.2 23.415 205 145 6 396 596 547 743 8.68e-11 65.9
Msa0163500 AT3G53510.1 28.000 200 105 7 397 576 126 306 9.07e-11 65.5

Find 159 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTCAGGCTATTTATTT+TGG 0.133141 1_4:-41740984 Msa0163500:CDS
GTTCTAGTTGTTACCTTTCT+TGG 0.179934 1_4:-41741329 Msa0163500:CDS
AAATTCTTCTATATTGATTC+TGG 0.200160 1_4:-41738814 Msa0163500:CDS
AAGTAAATTTCTCACTTAAA+AGG 0.230858 1_4:-41738024 Msa0163500:three_prime_UTR
GGCCTACCTCATATCTTAAA+TGG 0.236658 1_4:-41740198 Msa0163500:CDS
AGGAGACATCACAGAATTTC+AGG 0.237554 1_4:+41740235 None:intergenic
TTTCTTAATTGAGCCTATTC+AGG 0.241314 1_4:-41740871 Msa0163500:intron
ATGCACAACACGCGCTTCTT+TGG 0.244308 1_4:-41742635 Msa0163500:CDS
TGAAAATTTACCTTTGCTTC+TGG 0.253834 1_4:+41739080 None:intergenic
ATTGGATAGGATGGAGGTTT+GGG 0.281881 1_4:+41742943 None:intergenic
TTGCTGAAAACATTGGTTAT+AGG 0.286443 1_4:-41739237 Msa0163500:CDS
ACAAGCTGTGGAGCGTTTAA+TGG 0.290445 1_4:-41738745 Msa0163500:CDS
GGTGGTGACGGCGGAGAATT+TGG 0.290613 1_4:+41742731 None:intergenic
GTTGATTTGGACTATGTTAC+AGG 0.292806 1_4:-41740261 Msa0163500:CDS
GTTGCTATTGTTGGCCCGTC+TGG 0.296691 1_4:-41740144 Msa0163500:CDS
CACCGAACCTGCGCAAAGTA+TGG 0.300639 1_4:+41740953 None:intergenic
CATTATGTTTCTTGAGGAAA+TGG 0.300997 1_4:+41743007 None:intergenic
ATATTGGTATTGTATCCTTC+TGG 0.318377 1_4:+41739133 None:intergenic
TTCGGAATTTGGTTTGGAAT+TGG 0.319167 1_4:+41742925 None:intergenic
AGAATATTCCTCTTGGATAA+TGG 0.328281 1_4:-41738400 Msa0163500:CDS
TGCTGAAAACATTGGTTATA+GGG 0.331651 1_4:-41739236 Msa0163500:CDS
TAGGCCATCACTGTACTTAA+AGG 0.335395 1_4:+41740215 None:intergenic
GAAGGATACAATACCAATAT+TGG 0.336333 1_4:-41739130 Msa0163500:CDS
ATAAATGGCTCACCAGATAT+AGG 0.337032 1_4:+41740075 None:intergenic
GAAACCAGATGCTGTTGATT+TGG 0.337327 1_4:-41740274 Msa0163500:CDS
TTGGATTGTGTTGTTGTTGT+TGG 0.337896 1_4:+41742848 None:intergenic
AATTGGATAGGATGGAGGTT+TGG 0.344610 1_4:+41742942 None:intergenic
CACTTGCAAAACTGTTGCTT+CGG 0.347951 1_4:-41740107 Msa0163500:CDS
TGAGCCTCTTGGTCCAATAT+TGG 0.353043 1_4:+41739117 None:intergenic
CGGCTTTATGACCCTATATC+TGG 0.354734 1_4:-41740087 Msa0163500:intron
AACTCTGCAAACGAATGTTC+TGG 0.355588 1_4:+41739860 None:intergenic
AGTAATTCCCCAGGTTATTC+AGG 0.357510 1_4:-41740997 Msa0163500:CDS
CATGATAACAATACCTGAAT+AGG 0.358481 1_4:+41740858 None:intergenic
ATTGCAGGTTATTCCTTGTA+TGG 0.365623 1_4:-41741351 Msa0163500:intron
TGCACAACACGCGCTTCTTT+GGG 0.366424 1_4:-41742634 Msa0163500:CDS
GGGATTCGCGCTCGGCGGTT+TGG 0.368627 1_4:-41742682 Msa0163500:CDS
CACCAAACAAGTTTCACCTT+CGG 0.374225 1_4:-41743096 Msa0163500:five_prime_UTR
TTCAAACCATTTAAGATATG+AGG 0.384185 1_4:+41740192 None:intergenic
CACATATAGTTTCAAAATCA+TGG 0.388583 1_4:-41738235 Msa0163500:three_prime_UTR
TTGCTATTGTTGGCCCGTCT+GGG 0.392985 1_4:-41740143 Msa0163500:CDS
GCGAAGTTCTTGACCAAGAA+AGG 0.396160 1_4:+41741316 None:intergenic
ATAGGATGGAGGTTTGGGTT+TGG 0.402230 1_4:+41742948 None:intergenic
TTCCATACTTTGCGCAGGTT+CGG 0.403033 1_4:-41740955 Msa0163500:CDS
GGAGAGATAGTTGCTATTGT+TGG 0.403468 1_4:-41740153 Msa0163500:CDS
CCACTTAAAGTTGAGCCTCT+TGG 0.403623 1_4:+41739106 None:intergenic
CACGTTAAGAAGAGCGTATA+AGG 0.409537 1_4:+41742461 None:intergenic
CAGAGCCAACCGTAGATGAT+TGG 0.416358 1_4:+41742792 None:intergenic
AGCAATATCCCCACTCGAAA+CGG 0.419822 1_4:+41742521 None:intergenic
TGGTTCGAAGGGAGGTGCTT+CGG 0.420084 1_4:+41742868 None:intergenic
TCCCGAAGGTGAAACTTGTT+TGG 0.422283 1_4:+41743094 None:intergenic
TAGGAAAAGCTTACAATGAA+TGG 0.424642 1_4:-41740774 Msa0163500:CDS
GCTGATATCAAAGAAAGTTC+AGG 0.428520 1_4:+41741463 None:intergenic
TTGCAGAGAACTTGGTACTA+TGG 0.429606 1_4:+41741522 None:intergenic
TGGTTTGGAATTGGATAGGA+TGG 0.429952 1_4:+41742934 None:intergenic
GGCTAAAAGAATATTCCTCT+TGG 0.432858 1_4:-41738407 Msa0163500:CDS
TTTGGAGAGAAGGTTGGAAA+GGG 0.438225 1_4:+41742749 None:intergenic
CAGAGTCACTTGAGAGTGTC+AGG 0.442996 1_4:-41741079 Msa0163500:CDS
TCGGCGGTTTGGTTCTTGTT+CGG 0.443065 1_4:-41742671 Msa0163500:CDS
GCAGAAAATTGCAGAGAACT+TGG 0.447259 1_4:+41741514 None:intergenic
TAAATGGCTCACCAGATATA+GGG 0.448694 1_4:+41740076 None:intergenic
ATGGATTCATTGCTATCTTC+TGG 0.449042 1_4:-41738334 Msa0163500:CDS
GCAAACAAGCGTTCAATAGC+TGG 0.452836 1_4:+41740739 None:intergenic
TAGTCCAAATCAACAGCATC+TGG 0.452915 1_4:+41740270 None:intergenic
TTCATTTGATCGCTGTAGCT+TGG 0.457151 1_4:-41740916 Msa0163500:CDS
AATAAATAGCCTGAATAACC+TGG 0.460235 1_4:+41740988 None:intergenic
TTCGTTGAACGCGGTTTATG+AGG 0.460446 1_4:-41742607 Msa0163500:CDS
AAGGTTGGAAAGGGAGTAGA+CGG 0.461254 1_4:+41742758 None:intergenic
ACCAAACAAGTTTCACCTTC+GGG 0.461424 1_4:-41743095 Msa0163500:five_prime_UTR
ATGGTTTGAACCTTCACGTT+AGG 0.464084 1_4:-41740179 Msa0163500:CDS
GCATTGCAGAAAAGTCCATC+AGG 0.470147 1_4:+41741042 None:intergenic
GAGTGTCAGGTTTAAGAGAC+TGG 0.472219 1_4:-41741066 Msa0163500:CDS
ATGCAAACATATGAATCAAA+TGG 0.476810 1_4:+41738286 None:intergenic
TTCTATATTGATTCTGGACG+AGG 0.477901 1_4:-41738808 Msa0163500:CDS
GGTTGTTGTGGCGGTGGTGA+CGG 0.484096 1_4:+41742719 None:intergenic
TTGAACCTTCACGTTAGGCC+TGG 0.487360 1_4:-41740174 Msa0163500:CDS
ATTTGGAGAGAAGGTTGGAA+AGG 0.487740 1_4:+41742748 None:intergenic
ATTATGTTTCTTGAGGAAAT+GGG 0.491620 1_4:+41743008 None:intergenic
ACTTTCTTTGATATCAGCTA+TGG 0.492995 1_4:-41741458 Msa0163500:intron
TAAAGAATCACGCAGGATGT+AGG 0.494584 1_4:-41740793 Msa0163500:intron
TGCTATTGTTGGCCCGTCTG+GGG 0.498020 1_4:-41740142 Msa0163500:CDS
AATTTGGTTTGGAATTGGAT+AGG 0.501474 1_4:+41742930 None:intergenic
GTCACGCAGGGATTCGCGCT+CGG 0.508109 1_4:-41742690 Msa0163500:CDS
GCTTGTGATCTCTCATCGCT+TGG 0.508979 1_4:-41738443 Msa0163500:CDS
CCAAGAGGCTCAACTTTAAG+TGG 0.510650 1_4:-41739106 Msa0163500:CDS
TCGCTTGGAAACCGTTATGA+TGG 0.513065 1_4:-41738428 Msa0163500:CDS
GTTTAAGAGACTGGCCCTGA+TGG 0.513758 1_4:-41741057 Msa0163500:CDS
CATACTTTGCGCAGGTTCGG+TGG 0.518769 1_4:-41740952 Msa0163500:CDS
GTTGTTGTTGTTGGTTCGAA+GGG 0.520060 1_4:+41742857 None:intergenic
ACGATTGATGAACAAATCAA+TGG 0.522416 1_4:+41738071 None:intergenic
TGCAATGATAATGCATATGT+TGG 0.523394 1_4:-41741494 Msa0163500:CDS
GGACGAGGCAACTTCTGCGT+TGG 0.525874 1_4:-41738793 Msa0163500:CDS
TGTTGTTGTTGTTGGTTCGA+AGG 0.528253 1_4:+41742856 None:intergenic
TTTGGAATTGGATAGGATGG+AGG 0.530307 1_4:+41742937 None:intergenic
GATGAGAGTGAACATGAGAT+TGG 0.532729 1_4:+41742984 None:intergenic
GGTAACGACGCCGTTTCGAG+TGG 0.533942 1_4:-41742531 Msa0163500:CDS
ACTTCGCAAAATATCTAAGA+AGG 0.537461 1_4:-41741300 Msa0163500:CDS
CGGCGGAGAATTTGGAGAGA+AGG 0.538064 1_4:+41742739 None:intergenic
GAATCCCTGCGTGACGTCGA+CGG 0.544481 1_4:+41742698 None:intergenic
TGCAGATGCATAACGAATCA+CGG 0.546053 1_4:+41738103 None:intergenic
ACAATAGCAACTATCTCTCC+AGG 0.548439 1_4:+41740156 None:intergenic
GGTACAGTTGCTGAAAACAT+TGG 0.552667 1_4:-41739244 Msa0163500:CDS
CCTCGTTCTACTATGTTGAA+TGG 0.554792 1_4:-41738361 Msa0163500:CDS
GTTCTTTCCATACTTTGCGC+AGG 0.557361 1_4:-41740960 Msa0163500:CDS
GGAGAATTTGGAGAGAAGGT+TGG 0.557861 1_4:+41742743 None:intergenic
GCTATTGTTGGCCCGTCTGG+GGG 0.558455 1_4:-41740141 Msa0163500:CDS
ATAAATAGCCTGAATAACCT+GGG 0.561251 1_4:+41740989 None:intergenic
TCCAAGGAAAATTGAGCCAA+GGG 0.562182 1_4:+41737994 None:intergenic
CAGAGTTTAAGAAGACATGT+TGG 0.562645 1_4:-41739844 Msa0163500:CDS
TCTGTTTATGTGTGCGCATG+TGG 0.564446 1_4:-41738210 Msa0163500:three_prime_UTR
GCTTACAATGAATGGAGAGA+AGG 0.564869 1_4:-41740766 Msa0163500:CDS
GATTGGCATTATGTTTCTTG+AGG 0.568970 1_4:+41743001 None:intergenic
TGAGAATGGTGTTTGAAACA+TGG 0.569773 1_4:+41743033 None:intergenic
TTTATTAGAAAACTTCCAGA+AGG 0.574855 1_4:-41739148 Msa0163500:CDS
TTCCAAGGAAAATTGAGCCA+AGG 0.576098 1_4:+41737993 None:intergenic
TGAGGAAATGGGAATGAGAA+TGG 0.576273 1_4:+41743019 None:intergenic
TTGATTTGGACTATGTTACA+GGG 0.577115 1_4:-41740260 Msa0163500:CDS
CAAGCTTTCCATTATCCAAG+AGG 0.577336 1_4:+41738392 None:intergenic
TCTCTCAGCTTATCTGAATG+AGG 0.578614 1_4:-41741258 Msa0163500:intron
GGTTCGGTGGTGATTTCAAG+AGG 0.578745 1_4:-41740939 Msa0163500:CDS
GCAGATGCATAACGAATCAC+GGG 0.580097 1_4:+41738104 None:intergenic
TAAGTGGAGGCCAGAAGCAA+AGG 0.582508 1_4:-41739090 Msa0163500:intron
TACTATGTTGAATGGTCACA+TGG 0.582719 1_4:-41738353 Msa0163500:CDS
GTCGACGGTTGTTGTGGCGG+TGG 0.585158 1_4:+41742713 None:intergenic
GAGAATGGTGTTTGAAACAT+GGG 0.597355 1_4:+41743034 None:intergenic
TCTCTCCAGGCCTAACGTGA+AGG 0.599106 1_4:+41740169 None:intergenic
GTTGTTGTTGGTTCGAAGGG+AGG 0.603660 1_4:+41742860 None:intergenic
TTACAGGCTGGCTATTGCAA+GGG 0.604140 1_4:-41738847 Msa0163500:intron
GTCTCCTTTAAGTACAGTGA+TGG 0.604185 1_4:-41740219 Msa0163500:CDS
AACAACCGTCGACGTCACGC+AGG 0.605708 1_4:-41742703 Msa0163500:CDS
CTTACAGGCTGGCTATTGCA+AGG 0.606094 1_4:-41738848 Msa0163500:intron
GTAACGACGCCGTTTCGAGT+GGG 0.606585 1_4:-41742530 Msa0163500:CDS
AAGAAGAGCGTATAAGGTAG+CGG 0.608177 1_4:+41742467 None:intergenic
GATGAAAGCAGTAATTCCCC+AGG 0.609146 1_4:-41741006 Msa0163500:CDS
CGTGACGTCGACGGTTGTTG+TGG 0.611347 1_4:+41742707 None:intergenic
TAACGACGCCGTTTCGAGTG+GGG 0.611528 1_4:-41742529 Msa0163500:CDS
CTTAAAAGGAGTCTGACCCT+TGG 0.615573 1_4:-41738010 Msa0163500:three_prime_UTR
GACGTCGACGGTTGTTGTGG+CGG 0.616457 1_4:+41742710 None:intergenic
ATCTCGCGAAATCATCCCGA+AGG 0.619466 1_4:+41743080 None:intergenic
CGCTTTCACAAAGAGATACG+CGG 0.623202 1_4:+41741109 None:intergenic
TTGGGAAGCTTCGTTGAACG+CGG 0.628873 1_4:-41742616 Msa0163500:CDS
TGTTCGATCGTGTGTTGCAG+AGG 0.633124 1_4:-41742572 Msa0163500:CDS
TGTTGTGGCGGTGGTGACGG+CGG 0.634312 1_4:+41742722 None:intergenic
AATACCAATATTGGACCAAG+AGG 0.636919 1_4:-41739121 Msa0163500:CDS
GCTTTCACAAAGAGATACGC+GGG 0.637972 1_4:+41741110 None:intergenic
ATGTTTGCATATCTACTGTG+AGG 0.639245 1_4:-41738273 Msa0163500:three_prime_UTR
CTCATATTCAAATTCAGACA+AGG 0.639888 1_4:+41738169 None:intergenic
GTAACAACTAGAACCATACA+AGG 0.646113 1_4:+41741338 None:intergenic
AAGCGCGTGTTGTGCATACG+TGG 0.649016 1_4:+41742641 None:intergenic
GCGTTTAATGGAAAATCGCA+CGG 0.651374 1_4:-41738733 Msa0163500:intron
ACAACCGTCGACGTCACGCA+GGG 0.654065 1_4:-41742702 Msa0163500:CDS
AGAGGCTCAACTTTAAGTGG+AGG 0.656903 1_4:-41739103 Msa0163500:CDS
AACCATTTAAGATATGAGGT+AGG 0.658514 1_4:+41740196 None:intergenic
ACGCAGGGATTCGCGCTCGG+CGG 0.660721 1_4:-41742687 Msa0163500:CDS
GTTCGATCGTGTGTTGCAGA+GGG 0.670470 1_4:-41742571 Msa0163500:CDS
CATTGCAGAAAAGTCCATCA+GGG 0.673067 1_4:+41741043 None:intergenic
TGATTTGGACTATGTTACAG+GGG 0.677901 1_4:-41740259 Msa0163500:CDS
TAAATAGCCTGAATAACCTG+GGG 0.687037 1_4:+41740990 None:intergenic
CCATTCAACATAGTAGAACG+AGG 0.706113 1_4:+41738361 None:intergenic
GTTGTTAGTGAGACAAGCTG+TGG 0.729540 1_4:-41738757 Msa0163500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAACTGTAAAATTTA+TGG - chr1_4:41738912-41738931 Msa0163500:intron 10.0%
!!! TTTTTTTTTTAAAAAAAAGG+GGG + chr1_4:41740736-41740755 None:intergenic 10.0%
!!! CTTTTTTTTTTAAAAAAAAG+GGG + chr1_4:41740737-41740756 None:intergenic 10.0%
!!! GCTTTTTTTTTTAAAAAAAA+GGG + chr1_4:41740738-41740757 None:intergenic 10.0%
!!! AGCTTTTTTTTTTAAAAAAA+AGG + chr1_4:41740739-41740758 None:intergenic 10.0%
!!! CAGAAATATATATTTTAAAA+GGG + chr1_4:41741522-41741541 None:intergenic 10.0%
!!! TCAGAAATATATATTTTAAA+AGG + chr1_4:41741523-41741542 None:intergenic 10.0%
!!! AACAAATTTTAAAAGTGATT+TGG + chr1_4:41739062-41739081 None:intergenic 15.0%
!! TTAAATAAAATGAGAAATAG+AGG - chr1_4:41739347-41739366 Msa0163500:intron 15.0%
!! GAAAAGAAAATATAAAACAA+TGG + chr1_4:41740475-41740494 None:intergenic 15.0%
!! ATAAGAAGAAAAAAAAATCT+AGG - chr1_4:41740527-41740546 Msa0163500:intron 15.0%
!!! TTTTTTTTTAAAAAAAAGGG+GGG + chr1_4:41740735-41740754 None:intergenic 15.0%
!!! TTTTTTCCTTTTTGAATAAT+AGG - chr1_4:41740784-41740803 Msa0163500:intron 15.0%
!! TCATCTTCATATTAAATAAA+TGG + chr1_4:41741031-41741050 None:intergenic 15.0%
!!! ATATATATTTTAAAAGGGAT+TGG + chr1_4:41741517-41741536 None:intergenic 15.0%
!!! TTAATACATCATTTTGAATA+TGG + chr1_4:41741661-41741680 None:intergenic 15.0%
!! ACTGTAAAATTTATGGTTAA+TGG - chr1_4:41738919-41738938 Msa0163500:intron 20.0%
!!! GTTAATGGCATTTAAAATTA+TGG - chr1_4:41738934-41738953 Msa0163500:intron 20.0%
!! TCTAAAAAAATGAACATTAG+GGG + chr1_4:41739278-41739297 None:intergenic 20.0%
!!! CTCTAAAAAAATGAACATTA+GGG + chr1_4:41739279-41739298 None:intergenic 20.0%
!! CATTCAACATATTATACAAA+GGG + chr1_4:41739314-41739333 None:intergenic 20.0%
!! TCATTCAACATATTATACAA+AGG + chr1_4:41739315-41739334 None:intergenic 20.0%
!!! TACTTTTTAGTTCAATTGAT+TGG - chr1_4:41739489-41739508 Msa0163500:intron 20.0%
!! TATGACAAAGTTCAAAAATA+AGG - chr1_4:41740372-41740391 Msa0163500:intron 20.0%
!! TATAAAACAATGGAAAAGAA+AGG + chr1_4:41740465-41740484 None:intergenic 20.0%
!!! TTTTTTTTAAAAAAAAGGGG+GGG + chr1_4:41740734-41740753 None:intergenic 20.0%
!!! ATACTTAATTTTATCATGTG+TGG - chr1_4:41741053-41741072 Msa0163500:CDS 20.0%
!! AATACATATCTTATACTAAC+TGG - chr1_4:41741102-41741121 Msa0163500:CDS 20.0%
!!! TAAAAAATGTACAAGCTTTT+AGG - chr1_4:41741361-41741380 Msa0163500:intron 20.0%
!! TGATAAACTAGTATAAATTC+AGG - chr1_4:41741424-41741443 Msa0163500:intron 20.0%
!! TAAATGATGAGGATAATTAT+AGG + chr1_4:41741552-41741571 None:intergenic 20.0%
!!! AAATTCTTCTATATTGATTC+TGG - chr1_4:41742274-41742293 Msa0163500:intron 20.0%
!! CAAAACTATAAGAATTACTA+AGG + chr1_4:41742564-41742583 None:intergenic 20.0%
!! AAGTAAATTTCTCACTTAAA+AGG - chr1_4:41743064-41743083 Msa0163500:five_prime_UTR 20.0%
! ATTATGTTTCTTGAGGAAAT+GGG + chr1_4:41738083-41738102 None:intergenic 25.0%
! ACTTTAATGCAAATTCTGAT+TGG - chr1_4:41738788-41738807 Msa0163500:CDS 25.0%
! CAGTGTAAAAAGTTCTATAT+AGG - chr1_4:41738815-41738834 Msa0163500:CDS 25.0%
! TTATGGTTTATTACGTTCAA+TGG - chr1_4:41738951-41738970 Msa0163500:intron 25.0%
!! GCTTGTTAATGAATATAACA+AGG + chr1_4:41738997-41739016 None:intergenic 25.0%
!! CCTCTAAAAAAATGAACATT+AGG + chr1_4:41739280-41739299 None:intergenic 25.0%
!!! CCTAATGTTCATTTTTTTAG+AGG - chr1_4:41739277-41739296 Msa0163500:intron 25.0%
! AACATATTATACAAAGGGAT+AGG + chr1_4:41739309-41739328 None:intergenic 25.0%
! GTATAATATGTTGAATGAGA+AGG - chr1_4:41739317-41739336 Msa0163500:intron 25.0%
! GAACATAAATGGAATTATTG+TGG + chr1_4:41739448-41739467 None:intergenic 25.0%
! GCAAATAAATGGAACATAAA+TGG + chr1_4:41739459-41739478 None:intergenic 25.0%
! TTCTTCTTAAAGTACAATGA+AGG + chr1_4:41739877-41739896 None:intergenic 25.0%
!! GTTATTCAGGCTATTTATTT+TGG - chr1_4:41740104-41740123 Msa0163500:CDS 25.0%
! GAAGAAAAAAAAATCTAGGA+TGG - chr1_4:41740531-41740550 Msa0163500:intron 25.0%
!!! AGATTTTAAAACAGTAGAAC+AGG + chr1_4:41740573-41740592 None:intergenic 25.0%
!!! GTTCTACTGTTTTAAAATCT+AGG - chr1_4:41740573-41740592 Msa0163500:intron 25.0%
!! TTTCCTTTTTGAATAATAGG+TGG - chr1_4:41740787-41740806 Msa0163500:intron 25.0%
!! TTCAAACCATTTAAGATATG+AGG + chr1_4:41740899-41740918 None:intergenic 25.0%
!!! GTTTTAACTGAAACAAAGTT+TGG - chr1_4:41741461-41741480 Msa0163500:CDS 25.0%
!!! AACCAATTTTGAGACAAAAA+TGG + chr1_4:41741690-41741709 None:intergenic 25.0%
!!! TTTTTTAAAACTGGTTCTTG+TGG + chr1_4:41741714-41741733 None:intergenic 25.0%
!!! AGAACCAGTTTTAAAAAACT+TGG - chr1_4:41741716-41741735 Msa0163500:intron 25.0%
!!! GAACCAGTTTTAAAAAACTT+GGG - chr1_4:41741717-41741736 Msa0163500:intron 25.0%
! TTTATTAGAAAACTTCCAGA+AGG - chr1_4:41741940-41741959 Msa0163500:intron 25.0%
! TAACTTGATAAAGAAAACCA+TGG - chr1_4:41742090-41742109 Msa0163500:intron 25.0%
!! GTTTTCAATATGTTAGTCAT+TGG - chr1_4:41742522-41742541 Msa0163500:CDS 25.0%
!! TATTCTTTTAGCCATCATAA+CGG + chr1_4:41742674-41742693 None:intergenic 25.0%
! ATGCAAACATATGAATCAAA+TGG + chr1_4:41742805-41742824 None:intergenic 25.0%
! CACATATAGTTTCAAAATCA+TGG - chr1_4:41742853-41742872 Msa0163500:CDS 25.0%
!! AATAGATTTTCCAAATTCCA+AGG + chr1_4:41743113-41743132 None:intergenic 25.0%
CATTATGTTTCTTGAGGAAA+TGG + chr1_4:41738084-41738103 None:intergenic 30.0%
!! AATTTGGTTTGGAATTGGAT+AGG + chr1_4:41738161-41738180 None:intergenic 30.0%
!!! TTAGGTATGGTTTTAGGAAT+TGG + chr1_4:41738262-41738281 None:intergenic 30.0%
!!! GTAGATGATTGGTTTTTGTT+GGG + chr1_4:41738288-41738307 None:intergenic 30.0%
CAACAAAAACCAATCATCTA+CGG - chr1_4:41738287-41738306 Msa0163500:three_prime_UTR 30.0%
! ACCATTTTACACACAAACTT+TGG - chr1_4:41738702-41738721 Msa0163500:intron 30.0%
ACCAAAGTTTGTGTGTAAAA+TGG + chr1_4:41738706-41738725 None:intergenic 30.0%
! CTTCAAAAGTTTTACACTGT+AGG + chr1_4:41738757-41738776 None:intergenic 30.0%
AATGGATAACTTATGAGTTG+TGG - chr1_4:41738969-41738988 Msa0163500:intron 30.0%
! GTCATACAAAGTACCATATT+AGG + chr1_4:41739182-41739201 None:intergenic 30.0%
CGCAAATTTATTGTACTTTG+TGG - chr1_4:41739229-41739248 Msa0163500:CDS 30.0%
ATGAGAAATAGAGGATTGAA+TGG - chr1_4:41739356-41739375 Msa0163500:intron 30.0%
AAATAGAGGATTGAATGGTT+GGG - chr1_4:41739361-41739380 Msa0163500:intron 30.0%
TACAAGCAAAAACATGAGAA+GGG + chr1_4:41739411-41739430 None:intergenic 30.0%
ATGTTCCATTTATTTGCATG+CGG - chr1_4:41739462-41739481 Msa0163500:intron 30.0%
AAAAACCGCATGCAAATAAA+TGG + chr1_4:41739470-41739489 None:intergenic 30.0%
! TGCAATGATAATGCATATGT+TGG - chr1_4:41739594-41739613 Msa0163500:intron 30.0%
ACTTTCTTTGATATCAGCTA+TGG - chr1_4:41739630-41739649 Msa0163500:intron 30.0%
! TTCTGAAAGAACAATCAAGT+GGG + chr1_4:41739683-41739702 None:intergenic 30.0%
! TTTCTGAAAGAACAATCAAG+TGG + chr1_4:41739684-41739703 None:intergenic 30.0%
ATTGTTCTTTCAGAAAGACT+AGG - chr1_4:41739688-41739707 Msa0163500:intron 30.0%
ACTTCGCAAAATATCTAAGA+AGG - chr1_4:41739788-41739807 Msa0163500:intron 30.0%
ATAAATAGCCTGAATAACCT+GGG + chr1_4:41740102-41740121 None:intergenic 30.0%
AATAAATAGCCTGAATAACC+TGG + chr1_4:41740103-41740122 None:intergenic 30.0%
TTTCTTAATTGAGCCTATTC+AGG - chr1_4:41740217-41740236 Msa0163500:CDS 30.0%
CATGATAACAATACCTGAAT+AGG + chr1_4:41740233-41740252 None:intergenic 30.0%
! CTATTCAGGTATTGTTATCA+TGG - chr1_4:41740231-41740250 Msa0163500:CDS 30.0%
CTTAAAATAAAGAATCACGC+AGG - chr1_4:41740288-41740307 Msa0163500:intron 30.0%
TAGGAAAAGCTTACAATGAA+TGG - chr1_4:41740314-41740333 Msa0163500:intron 30.0%
! TATAGGGTCTTTTAAACAAG+TGG + chr1_4:41740409-41740428 None:intergenic 30.0%
TAAAAGACCCTATATGACAT+TGG - chr1_4:41740415-41740434 Msa0163500:intron 30.0%
CAACCACCTATTATTCAAAA+AGG + chr1_4:41740793-41740812 None:intergenic 30.0%
!! TTGATTTGGACTATGTTACA+GGG - chr1_4:41740828-41740847 Msa0163500:intron 30.0%
! AACCATTTAAGATATGAGGT+AGG + chr1_4:41740895-41740914 None:intergenic 30.0%
! ATTCTTCTTCTTTTGTATGC+AGG - chr1_4:41741314-41741333 Msa0163500:CDS 30.0%
AACAGTATCAAACCAGTTAT+GGG + chr1_4:41741402-41741421 None:intergenic 30.0%
AAACAGTATCAAACCAGTTA+TGG + chr1_4:41741403-41741422 None:intergenic 30.0%
TTAAGGGTAGATAAATGATG+AGG + chr1_4:41741563-41741582 None:intergenic 30.0%
TAGAATGGAAAAGAGAGAAT+TGG - chr1_4:41741613-41741632 Msa0163500:intron 30.0%
!! CACCATTTTTGTCTCAAAAT+TGG - chr1_4:41741685-41741704 Msa0163500:intron 30.0%
ACTTCAATCTCAAATACTGA+TGG - chr1_4:41741796-41741815 Msa0163500:intron 30.0%
!!! TGATTGTAGACACTTTTTTC+AGG - chr1_4:41741823-41741842 Msa0163500:intron 30.0%
! TTGCTGAAAACATTGGTTAT+AGG - chr1_4:41741851-41741870 Msa0163500:intron 30.0%
! TGCTGAAAACATTGGTTATA+GGG - chr1_4:41741852-41741871 Msa0163500:intron 30.0%
TCTGACAACAAAAATTGACA+TGG - chr1_4:41741876-41741895 Msa0163500:intron 30.0%
ATATTGGTATTGTATCCTTC+TGG + chr1_4:41741958-41741977 None:intergenic 30.0%
GAAGGATACAATACCAATAT+TGG - chr1_4:41741958-41741977 Msa0163500:intron 30.0%
TGAAAATTTACCTTTGCTTC+TGG + chr1_4:41742011-41742030 None:intergenic 30.0%
TTATCAAGTCTGTTAGTTCA+TGG + chr1_4:41742061-41742080 None:intergenic 30.0%
CAAAATTAGCTGTTAATCCA+TGG + chr1_4:41742110-41742129 None:intergenic 30.0%
! TTCTGTTTGAAAAGAGCTTT+TGG - chr1_4:41742130-41742149 Msa0163500:intron 30.0%
CACATGACAAATAACAGAAA+AGG + chr1_4:41742393-41742412 None:intergenic 30.0%
AACATTCTTCCTATGTTCAT+AGG - chr1_4:41742621-41742640 Msa0163500:CDS 30.0%
AGAATATTCCTCTTGGATAA+TGG - chr1_4:41742688-41742707 Msa0163500:CDS 30.0%
CTCATATTCAAATTCAGACA+AGG + chr1_4:41742922-41742941 None:intergenic 30.0%
ACGATTGATGAACAAATCAA+TGG + chr1_4:41743020-41743039 None:intergenic 30.0%
! GAGAATGGTGTTTGAAACAT+GGG + chr1_4:41738057-41738076 None:intergenic 35.0%
! TGAGAATGGTGTTTGAAACA+TGG + chr1_4:41738058-41738077 None:intergenic 35.0%
GATTGGCATTATGTTTCTTG+AGG + chr1_4:41738090-41738109 None:intergenic 35.0%
!! TTCGGAATTTGGTTTGGAAT+TGG + chr1_4:41738166-41738185 None:intergenic 35.0%
!!! TTTTGGTTCGGAATTTGGTT+TGG + chr1_4:41738172-41738191 None:intergenic 35.0%
!!! GTTGTTTTTGGTTCGGAATT+TGG + chr1_4:41738177-41738196 None:intergenic 35.0%
! TTGGATTGTGTTGTTGTTGT+TGG + chr1_4:41738243-41738262 None:intergenic 35.0%
!!! CGTAGATGATTGGTTTTTGT+TGG + chr1_4:41738289-41738308 None:intergenic 35.0%
AAAAACCAATCATCTACGGT+TGG - chr1_4:41738291-41738310 Msa0163500:three_prime_UTR 35.0%
CACAGATTCGTCATTTATTG+GGG + chr1_4:41739204-41739223 None:intergenic 35.0%
GCACAGATTCGTCATTTATT+GGG + chr1_4:41739205-41739224 None:intergenic 35.0%
TGCACAGATTCGTCATTTAT+TGG + chr1_4:41739206-41739225 None:intergenic 35.0%
TTATTGTACTTTGTGGTGTG+AGG - chr1_4:41739236-41739255 Msa0163500:CDS 35.0%
TATTGTACTTTGTGGTGTGA+GGG - chr1_4:41739237-41739256 Msa0163500:CDS 35.0%
GAAATAGAGGATTGAATGGT+TGG - chr1_4:41739360-41739379 Msa0163500:intron 35.0%
AATAGAGGATTGAATGGTTG+GGG - chr1_4:41739362-41739381 Msa0163500:intron 35.0%
CTACAAGCAAAAACATGAGA+AGG + chr1_4:41739412-41739431 None:intergenic 35.0%
GCTGATATCAAAGAAAGTTC+AGG + chr1_4:41739628-41739647 None:intergenic 35.0%
! GTTATGCTTTTGCAAATTGC+AGG - chr1_4:41739722-41739741 Msa0163500:intron 35.0%
ATTGCAGGTTATTCCTTGTA+TGG - chr1_4:41739737-41739756 Msa0163500:intron 35.0%
GTAACAACTAGAACCATACA+AGG + chr1_4:41739753-41739772 None:intergenic 35.0%
! GTTCTAGTTGTTACCTTTCT+TGG - chr1_4:41739759-41739778 Msa0163500:intron 35.0%
GGGGAAAAATATTGAACACA+GGG + chr1_4:41739940-41739959 None:intergenic 35.0%
CTGCAATGCTGAACAAAAAA+AGG - chr1_4:41740060-41740079 Msa0163500:intron 35.0%
TAAATAGCCTGAATAACCTG+GGG + chr1_4:41740101-41740120 None:intergenic 35.0%
! TTATCATGGTTCAGCTTTTG+AGG - chr1_4:41740245-41740264 Msa0163500:CDS 35.0%
TGCAGATCCAATGTCATATA+GGG + chr1_4:41740425-41740444 None:intergenic 35.0%
ATGCAGATCCAATGTCATAT+AGG + chr1_4:41740426-41740445 None:intergenic 35.0%
CCTCATCTATTGAGATTACA+TGG + chr1_4:41740642-41740661 None:intergenic 35.0%
CCATGTAATCTCAATAGATG+AGG - chr1_4:41740639-41740658 Msa0163500:intron 35.0%
!! GTTGATTTGGACTATGTTAC+AGG - chr1_4:41740827-41740846 Msa0163500:intron 35.0%
! TGATTTGGACTATGTTACAG+GGG - chr1_4:41740829-41740848 Msa0163500:intron 35.0%
TAAATGGCTCACCAGATATA+GGG + chr1_4:41741015-41741034 None:intergenic 35.0%
ATAAATGGCTCACCAGATAT+AGG + chr1_4:41741016-41741035 None:intergenic 35.0%
TTATCATGTGTGGTTTAGCA+TGG - chr1_4:41741063-41741082 Msa0163500:CDS 35.0%
TATCATGTGTGGTTTAGCAT+GGG - chr1_4:41741064-41741083 Msa0163500:CDS 35.0%
ATTCATATTCTTATACGCGC+AGG - chr1_4:41741178-41741197 Msa0163500:intron 35.0%
CAGAGTTTAAGAAGACATGT+TGG - chr1_4:41741244-41741263 Msa0163500:intron 35.0%
! TACCCTTAAGATCTAGCTTA+AGG - chr1_4:41741574-41741593 Msa0163500:intron 35.0%
! ACCCTTAAGATCTAGCTTAA+GGG - chr1_4:41741575-41741594 Msa0163500:intron 35.0%
GAGAGAAAGGAAGAATAGAA+TGG - chr1_4:41741598-41741617 Msa0163500:intron 35.0%
GGAAAAGAGAGAATTGGAAA+TGG - chr1_4:41741619-41741638 Msa0163500:intron 35.0%
!!! GCACCCAAGTTTTTTAAAAC+TGG + chr1_4:41741723-41741742 None:intergenic 35.0%
! GTCTTTACACATAAGGTGTT+TGG + chr1_4:41741745-41741764 None:intergenic 35.0%
AACTAGATATCTAAGTGCAG+TGG + chr1_4:41741773-41741792 None:intergenic 35.0%
AATACCAATATTGGACCAAG+AGG - chr1_4:41741967-41741986 Msa0163500:intron 35.0%
ACTTCGTTTCTCAAACTTAC+AGG - chr1_4:41742225-41742244 Msa0163500:intron 35.0%
!! TTCTATATTGATTCTGGACG+AGG - chr1_4:41742280-41742299 Msa0163500:intron 35.0%
! AGAATGTTTGAAGCTTCACA+GGG + chr1_4:41742609-41742628 None:intergenic 35.0%
! AAGAATGTTTGAAGCTTCAC+AGG + chr1_4:41742610-41742629 None:intergenic 35.0%
GGCTAAAAGAATATTCCTCT+TGG - chr1_4:41742681-41742700 Msa0163500:CDS 35.0%
TACTATGTTGAATGGTCACA+TGG - chr1_4:41742735-41742754 Msa0163500:CDS 35.0%
ATGGATTCATTGCTATCTTC+TGG - chr1_4:41742754-41742773 Msa0163500:CDS 35.0%
ATGTTTGCATATCTACTGTG+AGG - chr1_4:41742815-41742834 Msa0163500:CDS 35.0%
! GCTCAATTTTCCTTGGAATT+TGG - chr1_4:41743100-41743119 Msa0163500:five_prime_UTR 35.0%
CACCAAACAAGTTTCACCTT+CGG - chr1_4:41737992-41738011 Msa0163500:three_prime_UTR 40.0%
ACCAAACAAGTTTCACCTTC+GGG - chr1_4:41737993-41738012 Msa0163500:three_prime_UTR 40.0%
TGAGGAAATGGGAATGAGAA+TGG + chr1_4:41738072-41738091 None:intergenic 40.0%
GATGAGAGTGAACATGAGAT+TGG + chr1_4:41738107-41738126 None:intergenic 40.0%
ATTGGATAGGATGGAGGTTT+GGG + chr1_4:41738148-41738167 None:intergenic 40.0%
AATTGGATAGGATGGAGGTT+TGG + chr1_4:41738149-41738168 None:intergenic 40.0%
! TTTGGAATTGGATAGGATGG+AGG + chr1_4:41738154-41738173 None:intergenic 40.0%
! TGGTTTGGAATTGGATAGGA+TGG + chr1_4:41738157-41738176 None:intergenic 40.0%
!!! AGTGGTGGTTGTTTTTGGTT+CGG + chr1_4:41738184-41738203 None:intergenic 40.0%
!!! TGCTTCGGATTTTTAGGTTC+GGG + chr1_4:41738208-41738227 None:intergenic 40.0%
!!! GTGCTTCGGATTTTTAGGTT+CGG + chr1_4:41738209-41738228 None:intergenic 40.0%
!! GTTGTTGTTGTTGGTTCGAA+GGG + chr1_4:41738234-41738253 None:intergenic 40.0%
!! TGTTGTTGTTGTTGGTTCGA+AGG + chr1_4:41738235-41738254 None:intergenic 40.0%
! TTTTGTTGGGAGGTTAGGTA+TGG + chr1_4:41738275-41738294 None:intergenic 40.0%
!! TTGGTTTTTGTTGGGAGGTT+AGG + chr1_4:41738280-41738299 None:intergenic 40.0%
!!! GATGATTGGTTTTTGTTGGG+AGG + chr1_4:41738285-41738304 None:intergenic 40.0%
TTTGGAGAGAAGGTTGGAAA+GGG + chr1_4:41738342-41738361 None:intergenic 40.0%
ATTTGGAGAGAAGGTTGGAA+AGG + chr1_4:41738343-41738362 None:intergenic 40.0%
!!! AGGGAACTTGCGTTTTTTGA+AGG - chr1_4:41738536-41738555 Msa0163500:intron 40.0%
! AAGAAGAGCGTATAAGGTAG+CGG + chr1_4:41738624-41738643 None:intergenic 40.0%
! CACGTTAAGAAGAGCGTATA+AGG + chr1_4:41738630-41738649 None:intergenic 40.0%
! TTTTGTGTCACCCTGTTACA+TGG - chr1_4:41739145-41739164 Msa0163500:CDS 40.0%
ACAATCCATGCCATGTAACA+GGG + chr1_4:41739158-41739177 None:intergenic 40.0%
TACAATCCATGCCATGTAAC+AGG + chr1_4:41739159-41739178 None:intergenic 40.0%
! GGCATGGATTGTACCTAATA+TGG - chr1_4:41739166-41739185 Msa0163500:CDS 40.0%
ATTGTACTTTGTGGTGTGAG+GGG - chr1_4:41739238-41739257 Msa0163500:CDS 40.0%
ATAGAGGATTGAATGGTTGG+GGG - chr1_4:41739363-41739382 Msa0163500:intron 40.0%
CTATGGTCTGTCAGAAACAA+GGG + chr1_4:41739552-41739571 None:intergenic 40.0%
ACTATGGTCTGTCAGAAACA+AGG + chr1_4:41739553-41739572 None:intergenic 40.0%
TTGCAGAGAACTTGGTACTA+TGG + chr1_4:41739569-41739588 None:intergenic 40.0%
GCAGAAAATTGCAGAGAACT+TGG + chr1_4:41739577-41739596 None:intergenic 40.0%
TCTCTCAGCTTATCTGAATG+AGG - chr1_4:41739830-41739849 Msa0163500:CDS 40.0%
CAAGATTTGCAAACAGTGCA+AGG + chr1_4:41739910-41739929 None:intergenic 40.0%
GGGGGAAAAATATTGAACAC+AGG + chr1_4:41739941-41739960 None:intergenic 40.0%
GCAGCATCTAATTGTTTAGG+GGG + chr1_4:41739959-41739978 None:intergenic 40.0%
GGCAGCATCTAATTGTTTAG+GGG + chr1_4:41739960-41739979 None:intergenic 40.0%
GGGCAGCATCTAATTGTTTA+GGG + chr1_4:41739961-41739980 None:intergenic 40.0%
CATTGCAGAAAAGTCCATCA+GGG + chr1_4:41740048-41740067 None:intergenic 40.0%
AGTAATTCCCCAGGTTATTC+AGG - chr1_4:41740091-41740110 Msa0163500:CDS 40.0%
TTCATTTGATCGCTGTAGCT+TGG - chr1_4:41740172-41740191 Msa0163500:CDS 40.0%
TAAAGAATCACGCAGGATGT+AGG - chr1_4:41740295-41740314 Msa0163500:intron 40.0%
GCTTACAATGAATGGAGAGA+AGG - chr1_4:41740322-41740341 Msa0163500:intron 40.0%
AGGATGAACTGATGTCCATA+AGG - chr1_4:41740593-41740612 Msa0163500:intron 40.0%
TTTACTGAGCTGACACCTTA+TGG + chr1_4:41740611-41740630 None:intergenic 40.0%
! CCATTTTACAACCATTCTCG+AGG + chr1_4:41740674-41740693 None:intergenic 40.0%
CCTCGAGAATGGTTGTAAAA+TGG - chr1_4:41740671-41740690 Msa0163500:intron 40.0%
! GAAACCAGATGCTGTTGATT+TGG - chr1_4:41740814-41740833 Msa0163500:intron 40.0%
TAGTCCAAATCAACAGCATC+TGG + chr1_4:41740821-41740840 None:intergenic 40.0%
AGGAGACATCACAGAATTTC+AGG + chr1_4:41740856-41740875 None:intergenic 40.0%
GTCTCCTTTAAGTACAGTGA+TGG - chr1_4:41740869-41740888 Msa0163500:intron 40.0%
TAGGCCATCACTGTACTTAA+AGG + chr1_4:41740876-41740895 None:intergenic 40.0%
GGCCTACCTCATATCTTAAA+TGG - chr1_4:41740890-41740909 Msa0163500:CDS 40.0%
ATGGTTTGAACCTTCACGTT+AGG - chr1_4:41740909-41740928 Msa0163500:CDS 40.0%
ACAATAGCAACTATCTCTCC+AGG + chr1_4:41740935-41740954 None:intergenic 40.0%
! GGAGAGATAGTTGCTATTGT+TGG - chr1_4:41740935-41740954 Msa0163500:CDS 40.0%
! CACTTGCAAAACTGTTGCTT+CGG - chr1_4:41740981-41741000 Msa0163500:CDS 40.0%
AACTCTGCAAACGAATGTTC+TGG + chr1_4:41741231-41741250 None:intergenic 40.0%
!! ACAAGCTTTTAGGAGCAGTT+TGG - chr1_4:41741371-41741390 Msa0163500:intron 40.0%
CCCCTTAAGCTAGATCTTAA+GGG + chr1_4:41741579-41741598 None:intergenic 40.0%
! CCCTTAAGATCTAGCTTAAG+GGG - chr1_4:41741576-41741595 Msa0163500:intron 40.0%
TCCCCTTAAGCTAGATCTTA+AGG + chr1_4:41741580-41741599 None:intergenic 40.0%
!! GGAGCTAGTCTTTACACATA+AGG + chr1_4:41741752-41741771 None:intergenic 40.0%
GGTACAGTTGCTGAAAACAT+TGG - chr1_4:41741844-41741863 Msa0163500:intron 40.0%
GCGTTTAATGGAAAATCGCA+CGG - chr1_4:41742355-41742374 Msa0163500:intron 40.0%
TAATGGAAAATCGCACGGTA+TGG - chr1_4:41742360-41742379 Msa0163500:intron 40.0%
AAGCTTCACAGGGAAGAAAA+GGG + chr1_4:41742599-41742618 None:intergenic 40.0%
TCACAAGCACCTATGAACAT+AGG + chr1_4:41742633-41742652 None:intergenic 40.0%
CAAGCTTTCCATTATCCAAG+AGG + chr1_4:41742699-41742718 None:intergenic 40.0%
CCATTCAACATAGTAGAACG+AGG + chr1_4:41742730-41742749 None:intergenic 40.0%
CCTCGTTCTACTATGTTGAA+TGG - chr1_4:41742727-41742746 Msa0163500:CDS 40.0%
TGCAGATGCATAACGAATCA+CGG + chr1_4:41742988-41743007 None:intergenic 40.0%
TCCAAGGAAAATTGAGCCAA+GGG + chr1_4:41743097-41743116 None:intergenic 40.0%
TTCCAAGGAAAATTGAGCCA+AGG + chr1_4:41743098-41743117 None:intergenic 40.0%
! TCCCGAAGGTGAAACTTGTT+TGG + chr1_4:41737997-41738016 None:intergenic 45.0%
! ATAGGATGGAGGTTTGGGTT+TGG + chr1_4:41738143-41738162 None:intergenic 45.0%
!!! TTTTTAGGTTCGGGAAGTGG+TGG + chr1_4:41738199-41738218 None:intergenic 45.0%
!!! GGATTTTTAGGTTCGGGAAG+TGG + chr1_4:41738202-41738221 None:intergenic 45.0%
! GGGAGGTTAGGTATGGTTTT+AGG + chr1_4:41738268-41738287 None:intergenic 45.0%
AAGGTTGGAAAGGGAGTAGA+CGG + chr1_4:41738333-41738352 None:intergenic 45.0%
GGAGAATTTGGAGAGAAGGT+TGG + chr1_4:41738348-41738367 None:intergenic 45.0%
TTCGTTGAACGCGGTTTATG+AGG - chr1_4:41738481-41738500 Msa0163500:intron 45.0%
AGCAATATCCCCACTCGAAA+CGG + chr1_4:41738570-41738589 None:intergenic 45.0%
TATCAGCTATGGTGAGTCAG+AGG - chr1_4:41739641-41739660 Msa0163500:intron 45.0%
GCGAAGTTCTTGACCAAGAA+AGG + chr1_4:41739775-41739794 None:intergenic 45.0%
CGGGCAGCATCTAATTGTTT+AGG + chr1_4:41739962-41739981 None:intergenic 45.0%
GCTTTCACAAAGAGATACGC+GGG + chr1_4:41739981-41740000 None:intergenic 45.0%
CGCTTTCACAAAGAGATACG+CGG + chr1_4:41739982-41740001 None:intergenic 45.0%
GAGTGTCAGGTTTAAGAGAC+TGG - chr1_4:41740022-41740041 Msa0163500:intron 45.0%
GCATTGCAGAAAAGTCCATC+AGG + chr1_4:41740049-41740068 None:intergenic 45.0%
GATGAAAGCAGTAATTCCCC+AGG - chr1_4:41740082-41740101 Msa0163500:intron 45.0%
GTTCTTTCCATACTTTGCGC+AGG - chr1_4:41740128-41740147 Msa0163500:CDS 45.0%
TTCCATACTTTGCGCAGGTT+CGG - chr1_4:41740133-41740152 Msa0163500:CDS 45.0%
!! AGCTTTTGAGGAGCTGTCTT+TGG - chr1_4:41740257-41740276 Msa0163500:CDS 45.0%
GCAAACAAGCGTTCAATAGC+TGG + chr1_4:41740352-41740371 None:intergenic 45.0%
GGTTCAAATCTCCTCGAGAA+TGG - chr1_4:41740660-41740679 Msa0163500:intron 45.0%
! CGGCTTTATGACCCTATATC+TGG - chr1_4:41741001-41741020 Msa0163500:CDS 45.0%
AGTTTGGCAACTCCCATAAC+TGG - chr1_4:41741387-41741406 Msa0163500:intron 45.0%
! TCTAGCTTAAGGGGAGAGAA+AGG - chr1_4:41741585-41741604 Msa0163500:intron 45.0%
TGAGCCTCTTGGTCCAATAT+TGG + chr1_4:41741974-41741993 None:intergenic 45.0%
CCACTTAAAGTTGAGCCTCT+TGG + chr1_4:41741985-41742004 None:intergenic 45.0%
CCAAGAGGCTCAACTTTAAG+TGG - chr1_4:41741982-41742001 Msa0163500:intron 45.0%
AGAGGCTCAACTTTAAGTGG+AGG - chr1_4:41741985-41742004 Msa0163500:intron 45.0%
CGTTTCTCAAACTTACAGGC+TGG - chr1_4:41742229-41742248 Msa0163500:intron 45.0%
! TTACAGGCTGGCTATTGCAA+GGG - chr1_4:41742241-41742260 Msa0163500:intron 45.0%
GTTGTTAGTGAGACAAGCTG+TGG - chr1_4:41742331-41742350 Msa0163500:intron 45.0%
! ACAAGCTGTGGAGCGTTTAA+TGG - chr1_4:41742343-41742362 Msa0163500:intron 45.0%
GAAGCTTCACAGGGAAGAAA+AGG + chr1_4:41742600-41742619 None:intergenic 45.0%
TCGCTTGGAAACCGTTATGA+TGG - chr1_4:41742660-41742679 Msa0163500:CDS 45.0%
TCTGTTTATGTGTGCGCATG+TGG - chr1_4:41742878-41742897 Msa0163500:CDS 45.0%
GCAGATGCATAACGAATCAC+GGG + chr1_4:41742987-41743006 None:intergenic 45.0%
CTTAAAAGGAGTCTGACCCT+TGG - chr1_4:41743078-41743097 Msa0163500:five_prime_UTR 45.0%
! ACCCTTGGCTCAATTTTCCT+TGG - chr1_4:41743093-41743112 Msa0163500:five_prime_UTR 45.0%
!! TTTATCTTATTATTAATTTA+TGG - chr1_4:41738653-41738672 Msa0163500:intron 5.0%
ATCTCGCGAAATCATCCCGA+AGG + chr1_4:41738011-41738030 None:intergenic 50.0%
!! CGGGAAGTGGTGGTTGTTTT+TGG + chr1_4:41738189-41738208 None:intergenic 50.0%
!!! GGGAGGTGCTTCGGATTTTT+AGG + chr1_4:41738214-41738233 None:intergenic 50.0%
!! GTTGTTGTTGGTTCGAAGGG+AGG + chr1_4:41738231-41738250 None:intergenic 50.0%
CAGAGCCAACCGTAGATGAT+TGG + chr1_4:41738299-41738318 None:intergenic 50.0%
!! TCGGCGGTTTGGTTCTTGTT+CGG - chr1_4:41738417-41738436 Msa0163500:CDS 50.0%
ATGCACAACACGCGCTTCTT+TGG - chr1_4:41738453-41738472 Msa0163500:intron 50.0%
TGCACAACACGCGCTTCTTT+GGG - chr1_4:41738454-41738473 Msa0163500:intron 50.0%
TTGGGAAGCTTCGTTGAACG+CGG - chr1_4:41738472-41738491 Msa0163500:intron 50.0%
TGTTCGATCGTGTGTTGCAG+AGG - chr1_4:41738516-41738535 Msa0163500:intron 50.0%
GTTCGATCGTGTGTTGCAGA+GGG - chr1_4:41738517-41738536 Msa0163500:intron 50.0%
TGTCACCCTGTTACATGGCA+TGG - chr1_4:41739150-41739169 Msa0163500:CDS 50.0%
!! CAGAGTCACTTGAGAGTGTC+AGG - chr1_4:41740009-41740028 Msa0163500:intron 50.0%
! GTTTAAGAGACTGGCCCTGA+TGG - chr1_4:41740031-41740050 Msa0163500:intron 50.0%
!! GGTTCGGTGGTGATTTCAAG+AGG - chr1_4:41740149-41740168 Msa0163500:CDS 50.0%
TTGAACCTTCACGTTAGGCC+TGG - chr1_4:41740914-41740933 Msa0163500:CDS 50.0%
! TTGCTATTGTTGGCCCGTCT+GGG - chr1_4:41740945-41740964 Msa0163500:CDS 50.0%
!! TTGTTTTTCCTCCCCCAGAC+GGG + chr1_4:41740961-41740980 None:intergenic 50.0%
!!! GTTGTTTTTCCTCCCCCAGA+CGG + chr1_4:41740962-41740981 None:intergenic 50.0%
TAAGTGGAGGCCAGAAGCAA+AGG - chr1_4:41741998-41742017 Msa0163500:intron 50.0%
! CTTACAGGCTGGCTATTGCA+AGG - chr1_4:41742240-41742259 Msa0163500:intron 50.0%
GCTTGTGATCTCTCATCGCT+TGG - chr1_4:41742645-41742664 Msa0163500:CDS 50.0%
!! TGGTTCGAAGGGAGGTGCTT+CGG + chr1_4:41738223-41738242 None:intergenic 55.0%
CGGCGGAGAATTTGGAGAGA+AGG + chr1_4:41738352-41738371 None:intergenic 55.0%
AAGCGCGTGTTGTGCATACG+TGG + chr1_4:41738450-41738469 None:intergenic 55.0%
! GTAACGACGCCGTTTCGAGT+GGG - chr1_4:41738558-41738577 Msa0163500:intron 55.0%
! TAACGACGCCGTTTCGAGTG+GGG - chr1_4:41738559-41738578 Msa0163500:intron 55.0%
ACTTTGTGGTGTGAGGGGCA+TGG - chr1_4:41739243-41739262 Msa0163500:CDS 55.0%
! CTTTGTGGTGTGAGGGGCAT+GGG - chr1_4:41739244-41739263 Msa0163500:CDS 55.0%
CACCGAACCTGCGCAAAGTA+TGG + chr1_4:41740138-41740157 None:intergenic 55.0%
CATACTTTGCGCAGGTTCGG+TGG - chr1_4:41740136-41740155 Msa0163500:CDS 55.0%
TCTCTCCAGGCCTAACGTGA+AGG + chr1_4:41740922-41740941 None:intergenic 55.0%
! GTTGCTATTGTTGGCCCGTC+TGG - chr1_4:41740944-41740963 Msa0163500:CDS 55.0%
TGCTATTGTTGGCCCGTCTG+GGG - chr1_4:41740946-41740965 Msa0163500:CDS 55.0%
!! GGTGGTGACGGCGGAGAATT+TGG + chr1_4:41738360-41738379 None:intergenic 60.0%
GGTTGTTGTGGCGGTGGTGA+CGG + chr1_4:41738372-41738391 None:intergenic 60.0%
GACGTCGACGGTTGTTGTGG+CGG + chr1_4:41738381-41738400 None:intergenic 60.0%
CGTGACGTCGACGGTTGTTG+TGG + chr1_4:41738384-41738403 None:intergenic 60.0%
AACAACCGTCGACGTCACGC+AGG - chr1_4:41738385-41738404 Msa0163500:CDS 60.0%
ACAACCGTCGACGTCACGCA+GGG - chr1_4:41738386-41738405 Msa0163500:CDS 60.0%
GAATCCCTGCGTGACGTCGA+CGG + chr1_4:41738393-41738412 None:intergenic 60.0%
GGTAACGACGCCGTTTCGAG+TGG - chr1_4:41738557-41738576 Msa0163500:intron 60.0%
GCTATTGTTGGCCCGTCTGG+GGG - chr1_4:41740947-41740966 Msa0163500:CDS 60.0%
GGACGAGGCAACTTCTGCGT+TGG - chr1_4:41742295-41742314 Msa0163500:intron 60.0%
!! TGTTGTGGCGGTGGTGACGG+CGG + chr1_4:41738369-41738388 None:intergenic 65.0%
GTCGACGGTTGTTGTGGCGG+TGG + chr1_4:41738378-41738397 None:intergenic 65.0%
GTCACGCAGGGATTCGCGCT+CGG - chr1_4:41738398-41738417 Msa0163500:CDS 65.0%
ATTGTTGGCCCGTCTGGGGG+AGG - chr1_4:41740950-41740969 Msa0163500:CDS 65.0%
ACGCAGGGATTCGCGCTCGG+CGG - chr1_4:41738401-41738420 Msa0163500:CDS 70.0%
GGGATTCGCGCTCGGCGGTT+TGG - chr1_4:41738406-41738425 Msa0163500:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41737978 41743132 41737978 ID=Msa0163500;Name=Msa0163500
chr1_4 mRNA 41737978 41743132 41737978 ID=Msa0163500-mRNA-1;Parent=Msa0163500;Name=Msa0163500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=123|1|1|1|1|1|10|343|619
chr1_4 exon 41737978 41738467 41737978 ID=Msa0163500-mRNA-1:exon:12072;Parent=Msa0163500-mRNA-1
chr1_4 exon 41738734 41738863 41738734 ID=Msa0163500-mRNA-1:exon:12071;Parent=Msa0163500-mRNA-1
chr1_4 exon 41739091 41739278 41739091 ID=Msa0163500-mRNA-1:exon:12070;Parent=Msa0163500-mRNA-1
chr1_4 exon 41739825 41739910 41739825 ID=Msa0163500-mRNA-1:exon:12069;Parent=Msa0163500-mRNA-1
chr1_4 exon 41740088 41740304 41740088 ID=Msa0163500-mRNA-1:exon:12068;Parent=Msa0163500-mRNA-1
chr1_4 exon 41740717 41740800 41740717 ID=Msa0163500-mRNA-1:exon:12067;Parent=Msa0163500-mRNA-1
chr1_4 exon 41740872 41741138 41740872 ID=Msa0163500-mRNA-1:exon:12066;Parent=Msa0163500-mRNA-1
chr1_4 exon 41741259 41741366 41741259 ID=Msa0163500-mRNA-1:exon:12065;Parent=Msa0163500-mRNA-1
chr1_4 exon 41741459 41741545 41741459 ID=Msa0163500-mRNA-1:exon:12064;Parent=Msa0163500-mRNA-1
chr1_4 exon 41742464 41743132 41742464 ID=Msa0163500-mRNA-1:exon:12063;Parent=Msa0163500-mRNA-1
chr1_4 five_prime_UTR 41743010 41743132 41743010 ID=Msa0163500-mRNA-1:five_prime_utr;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41742464 41743009 41742464 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41741459 41741545 41741459 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41741259 41741366 41741259 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41740872 41741138 41740872 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41740717 41740800 41740717 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41740088 41740304 41740088 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41739825 41739910 41739825 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41739091 41739278 41739091 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41738734 41738863 41738734 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 CDS 41738321 41738467 41738321 ID=Msa0163500-mRNA-1:cds;Parent=Msa0163500-mRNA-1
chr1_4 three_prime_UTR 41737978 41738320 41737978 ID=Msa0163500-mRNA-1:three_prime_utr;Parent=Msa0163500-mRNA-1
Gene Sequence

>Msa0163500

ATGCCAATCTCATGTTCACTCTCATCATCATTCATTCTTCCAAACCCAAACCTCCATCCTATCCAATTCCAAACCAAATTCCGAACCAAAAACAACCACCACTTCCCGAACCTAAAAATCCGAAGCACCTCCCTTCGAACCAACAACAACAACACAATCCAATTCCTAAAACCATACCTAACCTCCCAACAAAAACCAATCATCTACGGTTGGCTCTGCAGCGCAATCTCCGTCTACTCCCTTTCCAACCTTCTCTCCAAATTCTCCGCCGTCACCACCGCCACAACAACCGTCGACGTCACGCAGGGATTCGCGCTCGGCGGTTTGGTTCTTGTTCGGTTGATTGCCACGTATGCACAACACGCGCTTCTTTGGGAAGCTTCGTTGAACGCGGTTTATGAGGTTCGTGTTCATGTGTTCGATCGTGTGTTGCAGAGGGAACTTGCGTTTTTTGAAGGTAACGACGCCGTTTCGAGTGGGGATATTGCTTATCGTATTACTGCTGAAGCTTCTGATCTTGCCGCTACCTTATACGCTCTTCTTAACACCATAGTACCAAGTTCTCTGCAATTTTCTGCAATGATAATGCATATGTTGGCTATAAGTCCTGAACTTTCTTTGATATCAGCTATGGTTATTCCTTGTATGGTTCTAGTTGTTACCTTTCTTGGTCAAGAACTTCGCAAAATATCTAAGAAGGCACATATTAGCATTGCTGCTCTCTCAGCTTATCTGAATGAGATGCTGCCCGCGTATCTCTTTGTGAAAGCGAACAACGCAGAGTCACTTGAGAGTGTCAGGTTTAAGAGACTGGCCCTGATGGACTTTTCTGCAATGCTGAACAAAAAAAGGATGAAAGCAGTAATTCCCCAGGTTATTCAGGCTATTTATTTTGGAGTTCTTTCCATACTTTGCGCAGGTTCGGTGGTGATTTCAAGAGGTTCATTTGATCGCTGTAGCTTGGTTTCATTTGTGACGTCATTGCTTTTCTTAATTGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGAGAAGGAGAGCCAGCTATTGAACGCTTGTTTGCTATGACAAAGTTCAAAAATAAGGTGGTTGAGAAACCAGATGCTGTTGATTTGGACTATGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTAAGTACAGTGATGGCCTACCTCATATCTTAAATGGTTTGAACCTTCACGTTAGGCCTGGAGAGATAGTTGCTATTGTTGGCCCGTCTGGGGGAGGAAAAACAACACTTGCAAAACTGTTGCTTCGGCTTTATGACCCTATATCTGGTTCTATACTGATTGATAACGAAAACATCCAGAACATTCGTTTGCAGAGTTTAAGAAGACATGTTGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAAAGTGAAGCATGTAGCTCAAACTGCTTATGCAGACGAGTTTATTAGAAAACTTCCAGAAGGATACAATACCAATATTGGACCAAGAGGCTCAACTTTAAGTGGAGGCCAGAAGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTGATTCTGGACGAGGCAACTTCTGCGTTGGATAGTAAATCTGAGTTGTTAGTGAGACAAGCTGTGGAGCGTTTAATGGAAAATCGCACGGTGCTTGTGATCTCTCATCGCTTGGAAACCGTTATGATGGCTAAAAGAATATTCCTCTTGGATAATGGAAAGCTTGAAGAGCTGCCTCGTTCTACTATGTTGAATGGTCACATGGATTCATTGCTATCTTCTGGTCATATTGTTTGA

Protein sequence

>Msa0163500

MPISCSLSSSFILPNPNLHPIQFQTKFRTKNNHHFPNLKIRSTSLRTNNNNTIQFLKPYLTSQQKPIIYGWLCSAISVYSLSNLLSKFSAVTTATTTVDVTQGFALGGLVLVRLIATYAQHALLWEASLNAVYEVRVHVFDRVLQRELAFFEGNDAVSSGDIAYRITAEASDLAATLYALLNTIVPSSLQFSAMIMHMLAISPELSLISAMVIPCMVLVVTFLGQELRKISKKAHISIAALSAYLNEMLPAYLFVKANNAESLESVRFKRLALMDFSAMLNKKRMKAVIPQVIQAIYFGVLSILCAGSVVISRGSFDRCSLVSFVTSLLFLIEPIQDVGKAYNEWREGEPAIERLFAMTKFKNKVVEKPDAVDLDYVTGDLKFCDVSFKYSDGLPHILNGLNLHVRPGEIVAIVGPSGGGKTTLAKLLLRLYDPISGSILIDNENIQNIRLQSLRRHVGVVSQDITLFSGTVAENIGYRDLTTKIDMEKVKHVAQTAYADEFIRKLPEGYNTNIGPRGSTLSGGQKQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNGKLEELPRSTMLNGHMDSLLSSGHIV*